BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032389
MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAW
RRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLD
TDGKGNAQGHLMVNYQFVNCGD

High Scoring Gene Products

Symbol, full name Information P value
PR4
pathogenesis-related 4
protein from Arabidopsis thaliana 1.5e-49
P83343
Pathogenesis-related protein PR-4
protein from Prunus persica 1.2e-44

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032389
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084918 - symbol:PR4 "pathogenesis-related 4" ...   516  1.5e-49   1
UNIPROTKB|P83343 - symbol:P83343 "Pathogenesis-related pr...   470  1.2e-44   1


>TAIR|locus:2084918 [details] [associations]
            symbol:PR4 "pathogenesis-related 4" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0016998 "cell wall macromolecule catabolic
            process" evidence=IEA] [GO:0042742 "defense response to bacterium"
            evidence=IEA;RCA] [GO:0050832 "defense response to fungus"
            evidence=IEA] [GO:0009627 "systemic acquired resistance"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
            [GO:0080027 "response to herbivore" evidence=IEP] [GO:0009817
            "defense response to fungus, incompatible interaction"
            evidence=IDA] [GO:0010167 "response to nitrate" evidence=RCA]
            [GO:0015706 "nitrate transport" evidence=RCA] [GO:0000325
            "plant-type vacuole" evidence=IDA] [GO:0004540 "ribonuclease
            activity" evidence=IDA] [GO:0004568 "chitinase activity"
            evidence=IDA] [GO:0008061 "chitin binding" evidence=ISS]
            [GO:0009615 "response to virus" evidence=IEP] [GO:0009723 "response
            to ethylene stimulus" evidence=IEP] InterPro:IPR001002
            InterPro:IPR001153 InterPro:IPR018226 InterPro:IPR018371
            Pfam:PF00187 Pfam:PF00967 PRINTS:PR00451 PRINTS:PR00602
            ProDom:PD000609 ProDom:PD004535 PROSITE:PS00026 PROSITE:PS00771
            PROSITE:PS00772 PROSITE:PS50941 PROSITE:PS51174 SMART:SM00270
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009723 GO:GO:0009651
            GO:GO:0042742 GO:GO:0009817 GO:GO:0009627 GO:GO:0009615 CAZy:CBM18
            GO:GO:0008061 Gene3D:3.30.60.10 SUPFAM:SSF57016 EMBL:AC011437
            GO:GO:0080027 Gene3D:2.40.40.10 InterPro:IPR014733
            InterPro:IPR009009 SUPFAM:SSF50685 EMBL:U01880 EMBL:AF370536
            EMBL:BT000046 EMBL:AY088644 IPI:IPI00529373 RefSeq:NP_187123.1
            UniGene:At.252 ProteinModelPortal:P43082 SMR:P43082 IntAct:P43082
            STRING:P43082 PaxDb:P43082 PRIDE:P43082 EnsemblPlants:AT3G04720.1
            GeneID:819632 KEGG:ath:AT3G04720 TAIR:At3g04720 eggNOG:NOG306084
            HOGENOM:HOG000090989 InParanoid:P43082 OMA:GYQQGHL PhylomeDB:P43082
            ProtClustDB:CLSN2914702 Genevestigator:P43082 GermOnline:AT3G04720
            Uniprot:P43082
        Length = 212

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/122 (73%), Positives = 101/122 (82%)

Query:    21 QSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
             +SASNVRATYH YNP +  WDL A  AYCSTWDA+KP AWR KYGWTAFCGP GPRGQA+
Sbjct:    72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query:    81 CGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140
             CGKCLRV N  T A  TVRIVDQCSNGGLDLDV +F ++DTDG G  QGHL+V+YQFV+C
Sbjct:   132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

Query:   141 GD 142
             G+
Sbjct:   192 GN 193


>UNIPROTKB|P83343 [details] [associations]
            symbol:P83343 "Pathogenesis-related protein PR-4"
            species:3760 "Prunus persica" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006952 "defense response" evidence=IEP]
            InterPro:IPR001153 InterPro:IPR018226 Pfam:PF00967 PRINTS:PR00602
            ProDom:PD004535 PROSITE:PS00771 PROSITE:PS00772 PROSITE:PS51174
            GO:GO:0005618 GO:GO:0005576 GO:GO:0006952 GO:GO:0050832
            GO:GO:0042742 Gene3D:2.40.40.10 InterPro:IPR014733
            InterPro:IPR009009 SUPFAM:SSF50685 EMBL:AF362989
            ProteinModelPortal:P83343 SMR:P83343 Uniprot:P83343
        Length = 107

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 79/107 (73%), Positives = 92/107 (85%)

Query:    36 ERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQ 95
             + I WDL  A  +C+TWDA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+
Sbjct:     1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAK 60

Query:    96 ATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 142
              TVRIVDQCSNGGLDLDV VF ++DT+G+GNAQGHL+VNY FV+CGD
Sbjct:    61 VTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       130   0.00091  102 3  11 22  0.39    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  154 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.52u 0.12s 11.64t   Elapsed:  00:00:00
  Total cpu time:  11.52u 0.12s 11.64t   Elapsed:  00:00:00
  Start:  Sat May 11 03:33:25 2013   End:  Sat May 11 03:33:25 2013

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