BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032389
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
Protein From Barley Seed
pdb|1BW4|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
Protein From Barley Seed
Length = 125
Score = 178 bits (451), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 3/125 (2%)
Query: 21 QSASNVRATYHLYNPERIGWDLNA--ARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQ 78
+ A++VRATYH Y P + WDL A AYC+TWDA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60
Query: 79 AACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVG-VFRKLDTDGKGNAQGHLMVNYQF 137
AACGKCLRVTN TGAQ T RIVDQC+NGGLDLD VF K+DT+G G QGHL VNYQF
Sbjct: 61 AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120
Query: 138 VNCGD 142
V+C D
Sbjct: 121 VDCRD 125
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 50 STWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS 105
++WD WR +G F PV R QA+CG C + G +A +RI+ S
Sbjct: 209 TSWD------WRNVHG-INFVSPV--RNQASCGSCYSFASMGM-LEARIRILTNNS 254
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 50 STWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIV 101
++WD WR +G F PV R QA+CG C + G +A +RI+
Sbjct: 3 TSWD------WRNVHG-INFVSPV--RNQASCGSCYSFASMGM-LEARIRIL 44
>pdb|2REX|A Chain A, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|C Chain C, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 121
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 73 VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
VGP A G ++V + T +QA +++DQ G R LD + + GHL+
Sbjct: 16 VGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI 75
Query: 133 VNYQFVN 139
++ + V
Sbjct: 76 LSDEDVT 82
>pdb|3E38|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
pdb|3E38|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Predicted Php- Like Metal-Dependent Phosphoesterase
(Bvu_3505) From Bacteroides Vulgatus Atcc 8482 At 2.20 A
Resolution
Length = 343
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 31 HLYNPERIGWDLNAARAYCSTWDANKPL 58
HLY PE I W L+ T D ++P+
Sbjct: 172 HLYXPEAIQWCLDKNLTXIGTSDIHQPI 199
>pdb|3SU8|X Chain X, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 611
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 73 VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
VGP A G ++V + T +QA +++DQ G R LD + + GHL+
Sbjct: 233 VGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI 292
Query: 133 VN 134
++
Sbjct: 293 LS 294
>pdb|3SUA|D Chain D, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|E Chain E, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|F Chain F, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
Length = 633
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 73 VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
VGP A G ++V + T +QA +++DQ G R LD + + GHL+
Sbjct: 255 VGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI 314
Query: 133 VN 134
++
Sbjct: 315 LS 316
>pdb|3HM6|X Chain X, Crystal Structure Of The Cytoplasmic Domain Of Human
Plexin B1
Length = 644
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 73 VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
VGP A G ++V + T +QA +++DQ G R LD + + GHL+
Sbjct: 266 VGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI 325
Query: 133 VN 134
++
Sbjct: 326 LS 327
>pdb|3SUL|A Chain A, Crystal Structure Of Cerato-Platanin 3 From M. Perniciosa
(Mpcp3)
Length = 122
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 80 ACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLD--TDGKGNAQGHLMVNYQF 137
+CG C ++T GTG V VD NG +VG R +D T+G+ A G++ V
Sbjct: 59 SCGTCYQITWSGTGKTIHVVGVDVAGNG---FNVGQ-RAMDDLTNGQAVALGNIDVTATL 114
Query: 138 VN 139
V+
Sbjct: 115 VD 116
>pdb|2JPH|A Chain A, Nmr Solution Structure Of The Rho Gtpase Binding Domain Of
Human Plexin-B1
Length = 123
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 73 VGPRGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLM 132
VGP A G ++V + T +QA +++DQ G R LD + + GHL+
Sbjct: 18 VGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI 77
Query: 133 VNYQFVN 139
++ + V
Sbjct: 78 LSDEDVT 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,202,824
Number of Sequences: 62578
Number of extensions: 169774
Number of successful extensions: 340
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)