Query 032389
Match_columns 142
No_of_seqs 169 out of 373
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 13:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00967 Barwin: Barwin family 100.0 1E-63 2.2E-68 374.5 3.9 119 22-140 1-119 (119)
2 COG0797 RlpA Lipoproteins [Cel 99.7 1.7E-17 3.7E-22 137.2 8.3 88 47-141 84-178 (233)
3 PLN03024 Putative EG45-like do 99.7 9.1E-17 2E-21 121.8 10.5 57 76-136 56-124 (125)
4 PRK10672 rare lipoprotein A; P 99.6 3.9E-15 8.4E-20 129.6 11.4 85 47-138 80-171 (361)
5 TIGR00413 rlpA rare lipoprotei 99.6 1.7E-15 3.8E-20 123.5 8.7 79 55-140 12-93 (208)
6 PF03330 DPBB_1: Rare lipoprot 99.4 1.6E-13 3.5E-18 94.1 4.9 53 79-135 13-78 (78)
7 PLN00050 expansin A; Provision 99.3 6.9E-12 1.5E-16 104.5 10.3 127 1-141 1-151 (247)
8 PLN00193 expansin-A; Provision 99.3 3.7E-11 8E-16 100.7 12.4 63 75-141 73-159 (256)
9 PLN03023 Expansin-like B1; Pro 99.3 8.1E-11 1.8E-15 98.2 12.2 109 23-141 25-142 (247)
10 smart00837 DPBB_1 Rare lipopro 99.2 1.5E-11 3.3E-16 87.8 5.9 56 76-135 10-87 (87)
11 PF07249 Cerato-platanin: Cera 98.5 4.7E-07 1E-11 68.7 6.2 60 76-139 54-113 (119)
12 COG4305 Endoglucanase C-termin 98.4 5.2E-07 1.1E-11 73.6 5.5 58 77-140 72-132 (232)
13 TIGR03170 flgA_cterm flagella 77.2 4.1 9E-05 29.4 3.9 29 75-103 89-117 (122)
14 PF04202 Mfp-3: Foot protein 3 73.6 3.8 8.3E-05 28.7 2.8 25 1-25 1-25 (71)
15 PRK12618 flgA flagellar basal 68.9 8.5 0.00018 29.6 4.0 30 75-104 105-134 (141)
16 PF13144 SAF_2: SAF-like 68.6 8.4 0.00018 29.9 4.1 29 75-103 163-191 (196)
17 PRK06005 flgA flagellar basal 63.7 12 0.00026 29.3 4.0 30 75-104 124-153 (160)
18 PRK07018 flgA flagellar basal 62.2 13 0.00027 30.4 4.1 29 75-103 200-228 (235)
19 PRK06804 flgA flagellar basal 59.0 13 0.00028 31.4 3.7 25 79-103 230-254 (261)
20 PF10731 Anophelin: Thrombin i 55.9 16 0.00035 25.2 3.1 27 5-38 4-30 (65)
21 PF07172 GRP: Glycine rich pro 55.5 12 0.00027 27.1 2.6 15 1-15 1-16 (95)
22 PRK12617 flgA flagellar basal 52.9 23 0.00049 29.1 4.1 29 75-103 179-207 (214)
23 PRK08515 flgA flagellar basal 51.8 23 0.00049 29.0 3.9 28 75-103 189-216 (222)
24 PRK12786 flgA flagellar basal 48.4 24 0.00052 30.8 3.7 30 75-104 282-311 (338)
25 PF15240 Pro-rich: Proline-ric 48.2 13 0.00028 30.3 1.9 17 8-24 4-20 (179)
26 PF07610 DUF1573: Protein of u 46.7 58 0.0013 20.0 4.4 44 85-135 2-45 (45)
27 KOG4742 Predicted chitinase [G 44.6 8.9 0.00019 33.3 0.5 80 55-137 171-253 (286)
28 PRK15396 murein lipoprotein; P 40.2 23 0.0005 25.1 2.0 21 1-21 1-24 (78)
29 PF15284 PAGK: Phage-encoded v 38.4 68 0.0015 22.0 4.0 11 48-58 42-52 (61)
30 COG5661 Predicted secreted Zn- 37.8 15 0.00033 30.6 0.8 26 20-45 24-50 (210)
31 PRK10959 outer membrane protei 37.5 43 0.00093 26.5 3.4 12 26-37 29-40 (212)
32 PRK11372 lysozyme inhibitor; P 31.4 2.1E+02 0.0046 21.0 6.5 16 6-21 6-21 (109)
33 PF12276 DUF3617: Protein of u 31.4 51 0.0011 24.6 2.8 12 1-12 1-12 (162)
34 PF08194 DIM: DIM protein; In 31.3 46 0.00099 20.6 2.0 21 1-23 1-21 (36)
35 PRK00178 tolB translocation pr 31.2 73 0.0016 27.2 4.0 32 1-36 1-32 (430)
36 TIGR03698 clan_AA_DTGF clan AA 29.8 85 0.0018 22.5 3.6 38 84-121 3-41 (107)
37 PRK00153 hypothetical protein; 29.1 27 0.00058 25.2 0.9 32 86-117 30-61 (104)
38 KOG2362 Uncharacterized Fe-S p 28.6 78 0.0017 28.2 3.8 55 87-142 83-152 (336)
39 TIGR03042 PS_II_psbQ_bact phot 28.5 20 0.00043 28.1 0.1 30 5-38 6-35 (142)
40 PF08139 LPAM_1: Prokaryotic m 27.8 31 0.00066 19.7 0.8 12 8-19 13-24 (25)
41 COG5510 Predicted small secret 27.4 70 0.0015 20.7 2.5 7 1-7 2-8 (44)
42 PRK03002 prsA peptidylprolyl i 27.4 67 0.0014 26.8 3.1 30 1-30 1-33 (285)
43 PRK13680 hypothetical protein; 25.4 73 0.0016 24.4 2.7 22 1-22 1-23 (117)
44 PF02015 Glyco_hydro_45: Glyco 24.6 33 0.00071 28.5 0.7 50 62-112 66-121 (201)
45 PF01568 Molydop_binding: Moly 24.5 64 0.0014 22.1 2.1 34 78-111 43-76 (110)
46 COG1261 FlgA Flagellar basal b 24.4 99 0.0021 25.7 3.5 30 74-103 184-213 (220)
47 PF11839 DUF3359: Protein of u 23.3 59 0.0013 24.0 1.8 22 1-22 1-23 (96)
48 cd02787 MopB_CT_ydeP The MopB_ 23.3 1.4E+02 0.003 20.9 3.7 28 82-109 48-80 (112)
49 PRK06911 rpsN 30S ribosomal pr 23.0 40 0.00087 24.7 0.8 39 95-135 54-100 (100)
50 PRK08061 rpsN 30S ribosomal pr 22.5 50 0.0011 22.4 1.2 36 98-135 18-61 (61)
51 PF08956 DUF1869: Domain of un 21.7 87 0.0019 21.4 2.2 14 84-97 7-20 (60)
52 COG0718 Uncharacterized protei 21.2 77 0.0017 23.6 2.1 32 86-117 32-63 (105)
53 TIGR02645 ARCH_P_rylase putati 20.9 1.5E+02 0.0033 27.6 4.3 38 82-121 30-70 (493)
54 PLN02202 carbonate dehydratase 20.9 1.4E+02 0.003 25.4 3.8 16 85-102 86-101 (284)
No 1
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=100.00 E-value=1e-63 Score=374.53 Aligned_cols=119 Identities=76% Similarity=1.403 Sum_probs=97.0
Q ss_pred hcCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEe
Q 032389 22 SASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIV 101 (142)
Q Consensus 22 s~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIv 101 (142)
||+|||||||||+|++|||||+++|+||||||++||++||+||||||||||.||+++.+||||+||||++||++++||||
T Consensus 1 sa~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIV 80 (119)
T PF00967_consen 1 SASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIV 80 (119)
T ss_dssp EEEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEE
T ss_pred CccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEec
Q 032389 102 DQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140 (142)
Q Consensus 102 DrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C 140 (142)
|+|++|+|||++.+|++|+++|+|+++|||.|+|+||+|
T Consensus 81 DqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 81 DQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp EE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred EcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 999999999999999999999999999999999999999
No 2
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.7e-17 Score=137.18 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=78.5
Q ss_pred cccccccC----CCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhh
Q 032389 47 AYCSTWDA----NKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKL 119 (142)
Q Consensus 47 ~ycatwd~----~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I 119 (142)
..-|+|++ +++++.++.|+..++++ +|.+.+.|+.|+|||.+||+||+|||+||+| .+.||||.+||++|
T Consensus 84 ~G~ASwYg~~fhgr~TA~Ge~~n~~~~tA---AH~TLP~~t~v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l 160 (233)
T COG0797 84 VGYASWYGEKFHGRKTANGERYDMNALTA---AHKTLPLPTYVRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKL 160 (233)
T ss_pred cceeeeeccccCCccccCccccccccccc---ccccCCCCCEEEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHh
Confidence 34578988 67999999999999998 8999999999999999999999999999987 47899999999999
Q ss_pred cCCCCCccceeEEEEEEEEecC
Q 032389 120 DTDGKGNAQGHLMVNYQFVNCG 141 (142)
Q Consensus 120 ~~~g~G~~~G~l~V~w~fv~C~ 141 (142)
+..+ .|+.+|..+++.++
T Consensus 161 ~~~~----~G~a~V~i~~l~~~ 178 (233)
T COG0797 161 GMIR----SGVAKVRIEVLGVA 178 (233)
T ss_pred CCcc----CceEEEEEEEeccc
Confidence 9855 66778888888753
No 3
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.71 E-value=9.1e-17 Score=121.82 Aligned_cols=57 Identities=32% Similarity=0.566 Sum_probs=49.3
Q ss_pred CCCCCCCcEEEEee---------CCCCCEEEEEEeecCCC---CCCCCCHHHHHhhcCCCCCccceeEEEEEE
Q 032389 76 RGQAACGKCLRVTN---------RGTGAQATVRIVDQCSN---GGLDLDVGVFRKLDTDGKGNAQGHLMVNYQ 136 (142)
Q Consensus 76 ~~~~~CGk~vrVTN---------~~tGksv~VrIvDrC~~---g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~ 136 (142)
++...||+|++|+. ..+|++|+|+|+|+||. ++||||++||++|++++ .|+++|+|+
T Consensus 56 ~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~----aG~v~V~y~ 124 (125)
T PLN03024 56 NNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANPV----AGIINIDYI 124 (125)
T ss_pred CCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCcc----CCEEEEEEe
Confidence 35678999999983 45799999999999983 59999999999999864 689999996
No 4
>PRK10672 rare lipoprotein A; Provisional
Probab=99.62 E-value=3.9e-15 Score=129.57 Aligned_cols=85 Identities=20% Similarity=0.187 Sum_probs=71.4
Q ss_pred cccccccCC----CCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhh
Q 032389 47 AYCSTWDAN----KPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKL 119 (142)
Q Consensus 47 ~ycatwd~~----~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I 119 (142)
..-|+|++. ++++.++.|...++.+ +|...+.|..|||||..|||+|+|||+||++ .+.||||++||++|
T Consensus 80 ~G~ASwYg~~f~G~~TA~Ge~~~~~~~tA---AH~tLPlps~vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~L 156 (361)
T PRK10672 80 AGLAAIYDAEAGSNLTASGERFDPNALTA---AHPTLPIPSYVRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRL 156 (361)
T ss_pred EEEEEEeCCccCCCcCcCceeecCCcCee---eccCCCCCCEEEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHh
Confidence 345678774 5889999999999987 8999999999999999999999999999997 47999999999999
Q ss_pred cCCCCCccceeEEEEEEEE
Q 032389 120 DTDGKGNAQGHLMVNYQFV 138 (142)
Q Consensus 120 ~~~g~G~~~G~l~V~w~fv 138 (142)
+..+ .+++.|+.--|
T Consensus 157 g~~~----~~~V~ve~i~v 171 (361)
T PRK10672 157 NTSN----NTKVRIDPIIV 171 (361)
T ss_pred CCCC----CceEEEEEEee
Confidence 9754 34555554433
No 5
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.62 E-value=1.7e-15 Score=123.53 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeE
Q 032389 55 NKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHL 131 (142)
Q Consensus 55 ~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l 131 (142)
+++++.++.|...++.+ +|.+.++|+.|+|||..||++|+|||+|||| .+.||||++|+++|+..+ .|..
T Consensus 12 G~~TAnGe~y~~~~~tA---AHktLPlgT~V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~~~----~G~a 84 (208)
T TIGR00413 12 GRKTANGEVYNMKALTA---AHKTLPFNTYVKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREIGLIS----RGVG 84 (208)
T ss_pred CCcCCCCeecCCCcccc---ccccCCCCCEEEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHcCCCc----CceE
Confidence 57899999999999987 8999999999999999999999999999997 478999999999999865 5677
Q ss_pred EEEEEEEec
Q 032389 132 MVNYQFVNC 140 (142)
Q Consensus 132 ~V~w~fv~C 140 (142)
+|..+.+..
T Consensus 85 ~V~vevl~~ 93 (208)
T TIGR00413 85 QVRIEVLHV 93 (208)
T ss_pred EEEEEEEec
Confidence 788777764
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.43 E-value=1.6e-13 Score=94.10 Aligned_cols=53 Identities=34% Similarity=0.634 Sum_probs=43.1
Q ss_pred CCCCcEEEEeeC---CC-----C--CEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeEEEEE
Q 032389 79 AACGKCLRVTNR---GT-----G--AQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHLMVNY 135 (142)
Q Consensus 79 ~~CGk~vrVTN~---~t-----G--ksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w 135 (142)
..||+|++++.. .. . |+|+|+|+|+|| .++||||+++|++|+++ ..|+++|+|
T Consensus 13 ~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~----~~G~i~V~w 78 (78)
T PF03330_consen 13 TACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADP----DAGVIPVEW 78 (78)
T ss_dssp TTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBST----TCSSEEEEE
T ss_pred CcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCC----CceEEEEEC
Confidence 779999998871 11 1 999999999987 58999999999999986 478999998
No 7
>PLN00050 expansin A; Provisional
Probab=99.34 E-value=6.9e-12 Score=104.55 Aligned_cols=127 Identities=20% Similarity=0.338 Sum_probs=81.8
Q ss_pred CcchhhHHHHHHHHHHHHH--hhhcCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeec-cCCCCC
Q 032389 1 MGKLSLCLLLFLCSLAIAA--AQSASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCG-PVGPRG 77 (142)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~--a~s~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~-~~~p~~ 77 (142)
||-+...++++|++|-..+ +..=..-+||| |--... ..+.+..|.= ..+. ...|+...-+. +.--++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~--Yg~~dg---~gt~gGACGY----g~l~-~~~~g~~~AAls~~lf~~ 70 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATF--YGGGDA---SGTMGGACGY----GNLY-SQGYGTNTAALSTALFNN 70 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEE--cCCCCC---CCCCCcccCC----CCcc-ccCCCceeeeccHhHccC
Confidence 6666666777888773332 22333567887 432211 1222344521 1111 12455432221 222467
Q ss_pred CCCCCcEEEEeeCCC-----CCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCccceeEEEEEE
Q 032389 78 QAACGKCLRVTNRGT-----GAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGHLMVNYQ 136 (142)
Q Consensus 78 ~~~CGk~vrVTN~~t-----Gksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~ 136 (142)
...||.|.+|+.... +.+|+|+|+|+||. .++|||+.||.+|+. ...|+|+|+|+
T Consensus 71 G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~----~~aGii~V~yR 146 (247)
T PLN00050 71 GLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ----YKAGIVPVQYR 146 (247)
T ss_pred CccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh----hcCCeeeeEEE
Confidence 789999999997532 24899999999973 689999999999997 45789999999
Q ss_pred EEecC
Q 032389 137 FVNCG 141 (142)
Q Consensus 137 fv~C~ 141 (142)
-|+|.
T Consensus 147 RVpC~ 151 (247)
T PLN00050 147 RVACR 151 (247)
T ss_pred EecCc
Confidence 99995
No 8
>PLN00193 expansin-A; Provisional
Probab=99.30 E-value=3.7e-11 Score=100.71 Aligned_cols=63 Identities=25% Similarity=0.466 Sum_probs=54.0
Q ss_pred CCCCCCCCcEEEEeeCC--------CCCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCcccee
Q 032389 75 PRGQAACGKCLRVTNRG--------TGAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGH 130 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~--------tGksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~ 130 (142)
-++...||.|.+|+... .|++|+|+|+|+||. .++|||+.||.+|+. ...|+
T Consensus 73 f~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~----~~~Gi 148 (256)
T PLN00193 73 FNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI----YRGGI 148 (256)
T ss_pred ccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh----hcCCe
Confidence 45678999999998731 467999999999973 479999999999996 45789
Q ss_pred EEEEEEEEecC
Q 032389 131 LMVNYQFVNCG 141 (142)
Q Consensus 131 l~V~w~fv~C~ 141 (142)
|+|+|+-|+|.
T Consensus 149 v~V~yrRVpC~ 159 (256)
T PLN00193 149 VPVLFQRVPCK 159 (256)
T ss_pred EeEEEEEeccc
Confidence 99999999995
No 9
>PLN03023 Expansin-like B1; Provisional
Probab=99.26 E-value=8.1e-11 Score=98.22 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=74.3
Q ss_pred cCCceeEEeeecCCCCCccccccccccccccCCCCcccccccCceeeeccCCCCCCCCCCcEEEEeeCC----CCCEEEE
Q 032389 23 ASNVRATYHLYNPERIGWDLNAARAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRG----TGAQATV 98 (142)
Q Consensus 23 ~~~v~aty~~y~p~~~~w~~~~~s~ycatwd~~~~~a~~~~y~wta~c~~~~p~~~~~CGk~vrVTN~~----tGksv~V 98 (142)
=..-+||| |-+... .++.+..|.==+-.. +-||...-..+.--++...||.|.+|+... .+++|+|
T Consensus 25 W~~a~AT~--Yg~~~g---~gt~gGACGYg~~~~-----~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V 94 (247)
T PLN03023 25 FTYSRATY--YGSPDC---LGTPTGACGFGEYGR-----TVNGGNVAGVSRLYRNGTGCGACYQVRCKAPNLCSDDGVNV 94 (247)
T ss_pred cccceEEE--eCCCCC---CCCCCccccCCcccc-----CCCcceeeeehhhhcCCchhcccEEeecCCCCccCCCCeEE
Confidence 34566777 665522 223344553222111 224544333333346778999999999754 5678999
Q ss_pred EEeecCC--CCCCCCCHHHHHhhcCCCCC---ccceeEEEEEEEEecC
Q 032389 99 RIVDQCS--NGGLDLDVGVFRKLDTDGKG---NAQGHLMVNYQFVNCG 141 (142)
Q Consensus 99 rIvDrC~--~g~LDLS~~aF~~I~~~g~G---~~~G~l~V~w~fv~C~ 141 (142)
+|+|.|+ ..++|||..||.+|+.+|+. +..|+|+|+|+=|+|.
T Consensus 95 ~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~ 142 (247)
T PLN03023 95 VVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR 142 (247)
T ss_pred EEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence 9999985 47999999999999987542 3469999999999994
No 10
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.24 E-value=1.5e-11 Score=87.81 Aligned_cols=56 Identities=27% Similarity=0.499 Sum_probs=46.7
Q ss_pred CCCCCCCcEEEEeeC------CCCCEEEEEEeecCCC----------------CCCCCCHHHHHhhcCCCCCccceeEEE
Q 032389 76 RGQAACGKCLRVTNR------GTGAQATVRIVDQCSN----------------GGLDLDVGVFRKLDTDGKGNAQGHLMV 133 (142)
Q Consensus 76 ~~~~~CGk~vrVTN~------~tGksv~VrIvDrC~~----------------g~LDLS~~aF~~I~~~g~G~~~G~l~V 133 (142)
++...||.|++|+.. .+|++|+|+|+|+|+. ++||||+.||.+|+.. ..|+|+|
T Consensus 10 ~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~----~~Gvi~v 85 (87)
T smart00837 10 NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY----KAGIVPV 85 (87)
T ss_pred cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh----cCCEEee
Confidence 466889999999853 2456999999999863 5899999999999984 5789999
Q ss_pred EE
Q 032389 134 NY 135 (142)
Q Consensus 134 ~w 135 (142)
+|
T Consensus 86 ~y 87 (87)
T smart00837 86 KY 87 (87)
T ss_pred EC
Confidence 86
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.45 E-value=4.7e-07 Score=68.66 Aligned_cols=60 Identities=23% Similarity=0.567 Sum_probs=46.9
Q ss_pred CCCCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEe
Q 032389 76 RGQAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVN 139 (142)
Q Consensus 76 ~~~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~ 139 (142)
.+.+.||+|.++|. +|+++.+..+|. +.++++++++||++|. .|+....|+|.++|+.|+
T Consensus 54 WnS~~CGtC~~lty--~g~si~vlaID~-a~~gfnis~~A~n~LT-~g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 54 WNSPNCGTCWKLTY--NGRSIYVLAIDH-AGGGFNISLDAMNDLT-NGQAVELGRVDATYTQVD 113 (119)
T ss_dssp TT-TTTT-EEEEEE--TTEEEEEEEEEE--SSSEEE-HHHHHHHH-TS-CCCC-EEE-EEEEE-
T ss_pred CCCCCCCCeEEEEE--CCeEEEEEEEec-CCCcccchHHHHHHhc-CCcccceeEEEEEEEEcC
Confidence 45689999999997 799999999999 4467999999999997 467788999999999986
No 12
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=98.39 E-value=5.2e-07 Score=73.63 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=48.8
Q ss_pred CCCCCCcEEEEeeCCCCCEEEEEEeecCC---CCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEec
Q 032389 77 GQAACGKCLRVTNRGTGAQATVRIVDQCS---NGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNC 140 (142)
Q Consensus 77 ~~~~CGk~vrVTN~~tGksv~VrIvDrC~---~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C 140 (142)
.-+.-|..+||..++. +.+|-|.|+-| .|.|||||.||.+|++ +.+|+|+|.|..|+-
T Consensus 72 pAAmAGaYLrVqGPKG--~TTVYVTDlYPegasGaLDLSpNAFakIGn----m~qGrIpvqWrvv~a 132 (232)
T COG4305 72 PAAMAGAYLRVQGPKG--KTTVYVTDLYPEGASGALDLSPNAFAKIGN----MKQGRIPVQWRVVKA 132 (232)
T ss_pred hhhhccceEEEECCCC--ceEEEEecccccccccccccChHHHhhhcc----hhcCccceeEEEecc
Confidence 3466789999987643 67889999965 5899999999999997 678999999999874
No 13
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=77.20 E-value=4.1 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+...+.=|..|+|.|+.+||.+.++|.+.
T Consensus 89 Al~~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 89 ALEDGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred EccccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 56778889999999999999999999875
No 14
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=73.63 E-value=3.8 Score=28.75 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred CcchhhHHHHHHHHHHHHHhhhcCC
Q 032389 1 MGKLSLCLLLFLCSLAIAAAQSASN 25 (142)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~s~~~ 25 (142)
|+.+++.+++.|.++.+.|-||..+
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCc
Confidence 8888988777777778888887664
No 15
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=68.93 E-value=8.5 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeecC
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQC 104 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDrC 104 (142)
+...+.=|..|+|.|..+||.|.++|.+..
T Consensus 105 AL~~G~~Gd~IrV~N~~S~riV~g~V~~~g 134 (141)
T PRK12618 105 ALSRGGVGDEIRVMNLSSRTTVSGRIAADG 134 (141)
T ss_pred EcccCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 566688899999999999999999998763
No 16
>PF13144 SAF_2: SAF-like
Probab=68.63 E-value=8.4 Score=29.93 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+...+.=|..|+|.|..+||.+.++|++.
T Consensus 163 Al~~G~~G~~I~V~N~~S~k~v~g~V~~~ 191 (196)
T PF13144_consen 163 ALEDGALGDTIRVKNLSSGKIVQGRVIGP 191 (196)
T ss_pred EccCCCCCCEEEEEECCCCCEEEEEEecC
Confidence 56778889999999999999999999875
No 17
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=63.74 E-value=12 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.3
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeecC
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQC 104 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDrC 104 (142)
+..++.=|..|+|.|..+||.|.++|.+..
T Consensus 124 Al~~G~~Gd~IrVrN~~Sgkiv~g~V~~~g 153 (160)
T PRK06005 124 PLQSGAAGDLIRVRNVDSGVIVSGTVLADG 153 (160)
T ss_pred EcccCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 466688899999999999999999998763
No 18
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=62.16 E-value=13 Score=30.45 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=24.9
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+..++.=|..|+|.|..+||.+.++|++.
T Consensus 200 Al~~G~~Gd~IrVrN~~Sgk~i~g~V~~~ 228 (235)
T PRK07018 200 ALNDGAVGQQIRVRNMASGQVVSGIVTGD 228 (235)
T ss_pred EcCCCCCCCeEEEEECCCCCEEEEEEeCC
Confidence 34557789999999999999999999875
No 19
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=58.96 E-value=13 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 79 AACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 79 ~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+.=|..|+|.|..+||.|.++|.+.
T Consensus 230 G~~Gd~IrVrN~~SgkvV~a~V~~~ 254 (261)
T PRK06804 230 GRKGELIKVKNLSSGRVVTATVDGS 254 (261)
T ss_pred CCCCCEEEEEECCCCCEEEEEEecC
Confidence 6778899999999999999999875
No 20
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=55.95 E-value=16 Score=25.23 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHhhhcCCceeEEeeecCCCC
Q 032389 5 SLCLLLFLCSLAIAAAQSASNVRATYHLYNPERI 38 (142)
Q Consensus 5 ~~~~~~~~~~~~~~~a~s~~~v~aty~~y~p~~~ 38 (142)
+|+++.+||+...+-.|+|.. |.|+..
T Consensus 4 Kl~vialLC~aLva~vQ~APQ-------Ya~Gee 30 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQ-------YAPGEE 30 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcc-------cCCCCC
Confidence 466888888775557788875 677754
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.47 E-value=12 Score=27.12 Aligned_cols=15 Identities=33% Similarity=0.436 Sum_probs=7.4
Q ss_pred CcchhhH-HHHHHHHH
Q 032389 1 MGKLSLC-LLLFLCSL 15 (142)
Q Consensus 1 m~~~~~~-~~~~~~~~ 15 (142)
|.+..++ |.|+|++|
T Consensus 1 MaSK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAL 16 (95)
T ss_pred CchhHHHHHHHHHHHH
Confidence 6655544 44444343
No 22
>PRK12617 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=52.94 E-value=23 Score=29.12 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=25.5
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+..++.=|..|+|.|..+|+.|.++|.+.
T Consensus 179 AL~~G~~Ge~IrVrN~~SgrvV~g~V~~~ 207 (214)
T PRK12617 179 ALSDAGENERVSVENSSSRRVVQGIVEAS 207 (214)
T ss_pred EccCCCCCCEEEEEECCCCCEEEEEEeCC
Confidence 45667889999999999999999999875
No 23
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=51.75 E-value=23 Score=28.97 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
+...+.=|..|||.| .+||.+.++|++.
T Consensus 189 Al~~G~~Gd~IrVrN-~Sgkii~g~V~~~ 216 (222)
T PRK08515 189 ALQDGNLGDIIQAKN-KSNKILKAKVLSK 216 (222)
T ss_pred EcccCCCCCEEEEEe-CCCCEEEEEEecC
Confidence 566788899999999 9999999999885
No 24
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=48.40 E-value=24 Score=30.83 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCCCCCCCcEEEEeeCCCCCEEEEEEeecC
Q 032389 75 PRGQAACGKCLRVTNRGTGAQATVRIVDQC 104 (142)
Q Consensus 75 p~~~~~CGk~vrVTN~~tGksv~VrIvDrC 104 (142)
+..++.=|..|+|.|..+||.|.++|.+.-
T Consensus 282 ALe~G~~Gd~IrV~N~~S~kiv~g~V~g~g 311 (338)
T PRK12786 282 ALEDGAEGDVVRVLNLQSKRTVTGTVTGRG 311 (338)
T ss_pred EccccCCCCEEEEEECCCCCEEEEEEecCC
Confidence 345577899999999999999999999874
No 25
>PF15240 Pro-rich: Proline-rich
Probab=48.21 E-value=13 Score=30.29 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhcC
Q 032389 8 LLLFLCSLAIAAAQSAS 24 (142)
Q Consensus 8 ~~~~~~~~~~~~a~s~~ 24 (142)
|+|.++|||+.|||+..
T Consensus 4 VLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 4 VLLSVALLALSSAQSTD 20 (179)
T ss_pred HHHHHHHHHhhhccccc
Confidence 44456677999999765
No 26
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=46.67 E-value=58 Score=19.97 Aligned_cols=44 Identities=18% Similarity=0.420 Sum_probs=30.7
Q ss_pred EEEeeCCCCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeEEEEE
Q 032389 85 LRVTNRGTGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHLMVNY 135 (142)
Q Consensus 85 vrVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w 135 (142)
++++|+.+.--++-+|.-.|..-..+++. +.|.+ | ..|.|.|+|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~---~~i~P-G---es~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSK---KPIAP-G---ESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCc---ceECC-C---CEEEEEEEC
Confidence 56889877767777777779876667765 33664 2 367888875
No 27
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=44.56 E-value=8.9 Score=33.30 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=62.3
Q ss_pred CCCcccccccC--ceeeeccCCCCCCCCCCcEEEEeeCC-CCCEEEEEEeecCCCCCCCCCHHHHHhhcCCCCCccceeE
Q 032389 55 NKPLAWRRKYG--WTAFCGPVGPRGQAACGKCLRVTNRG-TGAQATVRIVDQCSNGGLDLDVGVFRKLDTDGKGNAQGHL 131 (142)
Q Consensus 55 ~~~~a~~~~y~--wta~c~~~~p~~~~~CGk~vrVTN~~-tGksv~VrIvDrC~~g~LDLS~~aF~~I~~~g~G~~~G~l 131 (142)
+|.+.+|-.+. |+.++|+. ++..+...++.-|.- +...+.+++..-+-....+.+.+.|.+.+.+|=|....+|
T Consensus 171 gk~Y~GRG~iQlsWNyNYG~a---g~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~~~p~~~~~a~~~~~gFGaTt~~I 247 (286)
T KOG4742|consen 171 GKSYYGRGPIQLSWNYNYGAA---GKALGLDLLRNPELVAMNPVLAFKAALWFWMTPVRPVLNDFAAYDTPGFGATTRAI 247 (286)
T ss_pred CCcccccCcccccccccccHh---HhhcCchhhcCcchhccCchhhhheeeeeeccCCchhhhhhhcccCCCcchhhhhh
Confidence 78999998888 99999855 677777777644332 3566778888888766788888888888888889888888
Q ss_pred EEEEEE
Q 032389 132 MVNYQF 137 (142)
Q Consensus 132 ~V~w~f 137 (142)
...+|.
T Consensus 248 ng~~EC 253 (286)
T KOG4742|consen 248 NGDLEC 253 (286)
T ss_pred ccceec
Confidence 887664
No 28
>PRK15396 murein lipoprotein; Provisional
Probab=40.22 E-value=23 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=12.4
Q ss_pred CcchhhH---HHHHHHHHHHHHhh
Q 032389 1 MGKLSLC---LLLFLCSLAIAAAQ 21 (142)
Q Consensus 1 m~~~~~~---~~~~~~~~~~~~a~ 21 (142)
|++++++ +++.+.+|++|+..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 8877665 33334455777754
No 29
>PF15284 PAGK: Phage-encoded virulence factor
Probab=38.45 E-value=68 Score=22.02 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=7.0
Q ss_pred ccccccCCCCc
Q 032389 48 YCSTWDANKPL 58 (142)
Q Consensus 48 ycatwd~~~~~ 58 (142)
.|.-|-++-++
T Consensus 42 wC~lwP~g~~i 52 (61)
T PF15284_consen 42 WCDLWPAGIPI 52 (61)
T ss_pred HHhcCCCCCCC
Confidence 77777666543
No 30
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=15 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=18.1
Q ss_pred hhhcCCceeEEeeecCCCC-Ccccccc
Q 032389 20 AQSASNVRATYHLYNPERI-GWDLNAA 45 (142)
Q Consensus 20 a~s~~~v~aty~~y~p~~~-~w~~~~~ 45 (142)
|.++.=|+.+|.||+=... .|||+..
T Consensus 24 a~Ae~ivkk~ysYfSI~gkTaaDLdk~ 50 (210)
T COG5661 24 AEAETIVKKEYSYFSIGGKTAADLDKA 50 (210)
T ss_pred cccchhheeeeEEEEEcCccHHHHHHH
Confidence 4455678999999985543 5777653
No 31
>PRK10959 outer membrane protein W; Provisional
Probab=37.53 E-value=43 Score=26.53 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=8.7
Q ss_pred ceeEEeeecCCC
Q 032389 26 VRATYHLYNPER 37 (142)
Q Consensus 26 v~aty~~y~p~~ 37 (142)
||.-..+..|..
T Consensus 29 v~~g~~~v~p~~ 40 (212)
T PRK10959 29 VRAGTATVRPNE 40 (212)
T ss_pred EEEeEEEEccCC
Confidence 677777788874
No 32
>PRK11372 lysozyme inhibitor; Provisional
Probab=31.41 E-value=2.1e+02 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHhh
Q 032389 6 LCLLLFLCSLAIAAAQ 21 (142)
Q Consensus 6 ~~~~~~~~~~~~~~a~ 21 (142)
+++++++.+|++|+.-
T Consensus 6 ll~~~~~~lL~gCs~~ 21 (109)
T PRK11372 6 LLIICLPVLLTGCSAY 21 (109)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4444444446777753
No 33
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=31.35 E-value=51 Score=24.63 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=6.3
Q ss_pred CcchhhHHHHHH
Q 032389 1 MGKLSLCLLLFL 12 (142)
Q Consensus 1 m~~~~~~~~~~~ 12 (142)
|+|..+++++++
T Consensus 1 M~~~~~~~~~~~ 12 (162)
T PF12276_consen 1 MKRRLLLALALA 12 (162)
T ss_pred CchHHHHHHHHH
Confidence 666665544333
No 34
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=31.33 E-value=46 Score=20.59 Aligned_cols=21 Identities=52% Similarity=0.460 Sum_probs=10.2
Q ss_pred CcchhhHHHHHHHHHHHHHhhhc
Q 032389 1 MGKLSLCLLLFLCSLAIAAAQSA 23 (142)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~s~ 23 (142)
|+-+++. +++.+|++++|+.+
T Consensus 1 Mk~l~~a--~~l~lLal~~a~~~ 21 (36)
T PF08194_consen 1 MKCLSLA--FALLLLALAAAVPA 21 (36)
T ss_pred CceeHHH--HHHHHHHHHhcccC
Confidence 6666652 33333455555533
No 35
>PRK00178 tolB translocation protein TolB; Provisional
Probab=31.24 E-value=73 Score=27.18 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=21.7
Q ss_pred CcchhhHHHHHHHHHHHHHhhhcCCceeEEeeecCC
Q 032389 1 MGKLSLCLLLFLCSLAIAAAQSASNVRATYHLYNPE 36 (142)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~s~~~v~aty~~y~p~ 36 (142)
|.++.+++++++|++..+++++. .+..+..|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~~~~ 32 (430)
T PRK00178 1 MITLKRIALFVLCLLAGGAAAAE----LNIEITSGS 32 (430)
T ss_pred CcchhHHHHHHHHHHhhHhhcce----EEEEEecCC
Confidence 78889998888888866666543 344445544
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.84 E-value=85 Score=22.50 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=29.6
Q ss_pred EEEEeeCCCCCEEEEEE-eecCCCCCCCCCHHHHHhhcC
Q 032389 84 CLRVTNRGTGAQATVRI-VDQCSNGGLDLDVGVFRKLDT 121 (142)
Q Consensus 84 ~vrVTN~~tGksv~VrI-vDrC~~g~LDLS~~aF~~I~~ 121 (142)
.+++.|+++.+++.|+. ||....+.+=|+++.+++|+-
T Consensus 3 ~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~~lgl 41 (107)
T TIGR03698 3 DVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVNKLGL 41 (107)
T ss_pred EEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHHHcCC
Confidence 46788887777766664 899888776789999999864
No 37
>PRK00153 hypothetical protein; Validated
Probab=29.11 E-value=27 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=19.6
Q ss_pred EEeeCCCCCEEEEEEeecCCCCCCCCCHHHHH
Q 032389 86 RVTNRGTGAQATVRIVDQCSNGGLDLDVGVFR 117 (142)
Q Consensus 86 rVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~ 117 (142)
+||..+.|..|+|+|+-.+.--+|+++|++++
T Consensus 30 ~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~ 61 (104)
T PRK00153 30 EVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVD 61 (104)
T ss_pred EEEEEECCCeEEEEEecCceEEEEEECHHHcC
Confidence 45555556677777765555456666666664
No 38
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=28.59 E-value=78 Score=28.19 Aligned_cols=55 Identities=27% Similarity=0.228 Sum_probs=40.2
Q ss_pred EeeCCCCCEEEEEEeecC---------------CCCCCCCCHHHHHhhcCCCCCccceeEEEEEEEEecCC
Q 032389 87 VTNRGTGAQATVRIVDQC---------------SNGGLDLDVGVFRKLDTDGKGNAQGHLMVNYQFVNCGD 142 (142)
Q Consensus 87 VTN~~tGksv~VrIvDrC---------------~~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w~fv~C~~ 142 (142)
|.|. +|+-+|+|+--+= .+|..+.|.-.|++++.++.-...-+....=++++|+|
T Consensus 83 vVn~-kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~~~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd 152 (336)
T KOG2362|consen 83 VVNE-KGKFITARVKPKLVLIESEMPDGAFLVDWPGPEKDSVLVFRVLGNKRLKVATLFPDLSADGYDCGD 152 (336)
T ss_pred EEec-cceEEEeeccceEEEeecccccceeEEecCCCcchhhhhhhhccCCccccccccccceeeccccHh
Confidence 5554 8999988875441 25789999999999998765555555666777888875
No 39
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=28.54 E-value=20 Score=28.11 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCceeEEeeecCCCC
Q 032389 5 SLCLLLFLCSLAIAAAQSASNVRATYHLYNPERI 38 (142)
Q Consensus 5 ~~~~~~~~~~~~~~~a~s~~~v~aty~~y~p~~~ 38 (142)
+++|++++++|.+|+..+++- -.|| +|+++
T Consensus 6 s~~Lv~~~~~Lvsc~~p~~~~-p~ty---sp~~l 35 (142)
T TIGR03042 6 SLLLVLLLTFLVSCSGPAAAV-PPTY---SPAQL 35 (142)
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCC---CHHHH
Confidence 344666777777776654442 4466 77743
No 40
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=27.78 E-value=31 Score=19.72 Aligned_cols=12 Identities=42% Similarity=0.243 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 032389 8 LLLFLCSLAIAA 19 (142)
Q Consensus 8 ~~~~~~~~~~~~ 19 (142)
+++.+.+|++|+
T Consensus 13 ~l~a~~~LagCs 24 (25)
T PF08139_consen 13 PLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHhhcc
Confidence 333333456665
No 41
>COG5510 Predicted small secreted protein [Function unknown]
Probab=27.45 E-value=70 Score=20.65 Aligned_cols=7 Identities=43% Similarity=0.278 Sum_probs=4.9
Q ss_pred CcchhhH
Q 032389 1 MGKLSLC 7 (142)
Q Consensus 1 m~~~~~~ 7 (142)
|+|+.++
T Consensus 2 mk~t~l~ 8 (44)
T COG5510 2 MKKTILL 8 (44)
T ss_pred chHHHHH
Confidence 6777766
No 42
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=27.43 E-value=67 Score=26.83 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=16.7
Q ss_pred CcchhhH-HHHHHHHH--HHHHhhhcCCceeEE
Q 032389 1 MGKLSLC-LLLFLCSL--AIAAAQSASNVRATY 30 (142)
Q Consensus 1 m~~~~~~-~~~~~~~~--~~~~a~s~~~v~aty 30 (142)
|++..++ ++++++++ ++|++...+.+-|++
T Consensus 1 ~k~~~~~~~~~~~~~~~~~~c~~~~~~~~va~v 33 (285)
T PRK03002 1 MRGKHIFIITALISILMLSACGQKNSSATVATA 33 (285)
T ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 7755555 33334333 555555556677877
No 43
>PRK13680 hypothetical protein; Provisional
Probab=25.36 E-value=73 Score=24.41 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=11.9
Q ss_pred CcchhhHHHHHHHHH-HHHHhhh
Q 032389 1 MGKLSLCLLLFLCSL-AIAAAQS 22 (142)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~a~s 22 (142)
|++..+++++++.++ .+.+|++
T Consensus 1 ~~~~~l~~~~~l~~~~~~~sa~~ 23 (117)
T PRK13680 1 KKRGALLGLLLLSACGSVFAANA 23 (117)
T ss_pred CchhhhHHHHHHHHHHhHhhhcc
Confidence 788888844444333 3334443
No 44
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=24.64 E-value=33 Score=28.47 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=30.5
Q ss_pred cccCceeeeccCCCCCCCCCCcEEEEeeCC---CCCEEEEEEeecCC---CCCCCCC
Q 032389 62 RKYGWTAFCGPVGPRGQAACGKCLRVTNRG---TGAQATVRIVDQCS---NGGLDLD 112 (142)
Q Consensus 62 ~~y~wta~c~~~~p~~~~~CGk~vrVTN~~---tGksv~VrIvDrC~---~g~LDLS 112 (142)
..||+.|.-- .|......|++|+++|=+. .||+.+|++..... .+++||-
T Consensus 66 layGfaA~~~-~G~~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~dlg~n~FDl~ 121 (201)
T PF02015_consen 66 LAYGFAAASI-TGGSESSWCCACYELTFTSGPLKGKKMIVQVTNTGGDLGSNQFDLA 121 (201)
T ss_dssp EEEEEEEEE--TT--HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TTTTTTEEEEE
T ss_pred ceeeeeeeee-cCCCCCCcccceEEEEEcCCCcCCCEeEEEecccCCCCCCCeEEEE
Confidence 4589888762 1223457899999987653 68999999988752 3455554
No 45
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=24.46 E-value=64 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCCCcEEEEeeCCCCCEEEEEEeecCCCCCCCC
Q 032389 78 QAACGKCLRVTNRGTGAQATVRIVDQCSNGGLDL 111 (142)
Q Consensus 78 ~~~CGk~vrVTN~~tGksv~VrIvDrC~~g~LDL 111 (142)
+..-|..|+|+|....-.+.|+|.|+.+.|.+-+
T Consensus 43 Gi~~Gd~V~v~s~~G~v~~~v~~~~~v~~g~v~~ 76 (110)
T PF01568_consen 43 GIKDGDWVRVSSPRGSVEVRVKVTDGVPPGVVFM 76 (110)
T ss_dssp T--TTCEEEEEETTEEEEEEEEEETTS-TTEEEE
T ss_pred cCcCCCEEEEEeccceEeeeeEEecCCcCCEEEE
Confidence 4556899999998765666777777766554433
No 46
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.41 E-value=99 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCCCCCCCcEEEEeeCCCCCEEEEEEeec
Q 032389 74 GPRGQAACGKCLRVTNRGTGAQATVRIVDQ 103 (142)
Q Consensus 74 ~p~~~~~CGk~vrVTN~~tGksv~VrIvDr 103 (142)
-+..++.=|..|||.|...||-|.++|...
T Consensus 184 ~aL~nga~Ge~IrVrn~~SgkIvsg~V~~~ 213 (220)
T COG1261 184 KALENGAVGEVIRVRNVSSGKIVSGTVDGD 213 (220)
T ss_pred eEccCccccceEEEecCCCCceEEEEEccC
Confidence 367888999999999999999999998753
No 47
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=23.34 E-value=59 Score=24.01 Aligned_cols=22 Identities=45% Similarity=0.307 Sum_probs=14.0
Q ss_pred CcchhhH-HHHHHHHHHHHHhhh
Q 032389 1 MGKLSLC-LLLFLCSLAIAAAQS 22 (142)
Q Consensus 1 m~~~~~~-~~~~~~~~~~~~a~s 22 (142)
|+++-+. +++.+.++++|+..|
T Consensus 1 M~k~l~sal~~~~~L~~GCAsts 23 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCASTS 23 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCCc
Confidence 7777755 555555567887543
No 48
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.30 E-value=1.4e+02 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=21.3
Q ss_pred CcEEEEeeCCCCCEEEEEEee-----cCCCCCC
Q 032389 82 GKCLRVTNRGTGAQATVRIVD-----QCSNGGL 109 (142)
Q Consensus 82 Gk~vrVTN~~tGksv~VrIvD-----rC~~g~L 109 (142)
|..|+|+|...--.++|+|.| +-+.|.+
T Consensus 48 Gd~V~v~s~~G~i~~~a~v~~~~~~~~i~~g~v 80 (112)
T cd02787 48 GDRVDLESAFGDGQGRIVRGFRVVEYDIPRGCL 80 (112)
T ss_pred CCEEEEEecCCCCeEEEEeccceeecCCCCCcE
Confidence 779999998766678899888 6555544
No 49
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=23.04 E-value=40 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=30.4
Q ss_pred EEEEEEeecCC--------CCCCCCCHHHHHhhcCCCCCccceeEEEEE
Q 032389 95 QATVRIVDQCS--------NGGLDLDVGVFRKLDTDGKGNAQGHLMVNY 135 (142)
Q Consensus 95 sv~VrIvDrC~--------~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w 135 (142)
|-.+||..||. .+.+-||.-.|.+++.. |..+|+..-+|
T Consensus 54 ss~~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~--G~lPGv~KaSW 100 (100)
T PRK06911 54 SNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMV--GNIPGGRKSSW 100 (100)
T ss_pred cCcchhhcccCCCCCCcccccccCchHHHHHHHHHc--CCCCCeecccC
Confidence 44566777772 36789999999999975 57899988777
No 50
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=22.53 E-value=50 Score=22.42 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=27.1
Q ss_pred EEEeecCC--------CCCCCCCHHHHHhhcCCCCCccceeEEEEE
Q 032389 98 VRIVDQCS--------NGGLDLDVGVFRKLDTDGKGNAQGHLMVNY 135 (142)
Q Consensus 98 VrIvDrC~--------~g~LDLS~~aF~~I~~~g~G~~~G~l~V~w 135 (142)
+||..+|. -+...||.-.|.+++.. |..+|...-+|
T Consensus 18 ~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~--G~ipGv~KasW 61 (61)
T PRK08061 18 VRAYTRCERCGRPHSVYRKFGLCRICFRELAYK--GQIPGVKKASW 61 (61)
T ss_pred cccceeeecCCCCcceeccCCccHHHHHHHHHc--CcCCCeeeccC
Confidence 56666762 25677999999999975 57899887776
No 51
>PF08956 DUF1869: Domain of unknown function (DUF1869); InterPro: IPR015051 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 1NEI_A.
Probab=21.68 E-value=87 Score=21.44 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=9.7
Q ss_pred EEEEeeCCCCCEEE
Q 032389 84 CLRVTNRGTGAQAT 97 (142)
Q Consensus 84 ~vrVTN~~tGksv~ 97 (142)
-+.|||..||-||.
T Consensus 7 ~LTvTNn~NGVSVD 20 (60)
T PF08956_consen 7 TLTVTNNNNGVSVD 20 (60)
T ss_dssp EEEEEETTT--EEE
T ss_pred EEEEEeCCCceEee
Confidence 46799999998874
No 52
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.19 E-value=77 Score=23.64 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEeeCCCCCEEEEEEeecCCCCCCCCCHHHHH
Q 032389 86 RVTNRGTGAQATVRIVDQCSNGGLDLDVGVFR 117 (142)
Q Consensus 86 rVTN~~tGksv~VrIvDrC~~g~LDLS~~aF~ 117 (142)
+|+..+.|.-|+|+|.-.+.-.+|+++|+++.
T Consensus 32 ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~d 63 (105)
T COG0718 32 EVTGKAGGGLVTVTINGKGEVKSVEIDPSLLD 63 (105)
T ss_pred EEeeecCCcEEEEEEeCCCcEEEEEeCHHHcC
Confidence 45666666677777777766666777777665
No 53
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=20.90 E-value=1.5e+02 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=31.3
Q ss_pred CcEEEEeeCCCCCEEEEEEeec---CCCCCCCCCHHHHHhhcC
Q 032389 82 GKCLRVTNRGTGAQATVRIVDQ---CSNGGLDLDVGVFRKLDT 121 (142)
Q Consensus 82 Gk~vrVTN~~tGksv~VrIvDr---C~~g~LDLS~~aF~~I~~ 121 (142)
+.+|+|+ .+++++++.|++. -..|.+=||..+|++|.-
T Consensus 30 ~~rv~v~--~~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~~ 70 (493)
T TIGR02645 30 QDRVEVR--IGGKSLIAILVGSDTLVEMGEIGLSVSAVETFMA 70 (493)
T ss_pred CCeEEEE--eCCEEEEEEEecccccccCCeeeccHHHHHHcCC
Confidence 5688887 4688999988863 367999999999999963
No 54
>PLN02202 carbonate dehydratase
Probab=20.85 E-value=1.4e+02 Score=25.42 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=10.6
Q ss_pred EEEeeCCCCCEEEEEEee
Q 032389 85 LRVTNRGTGAQATVRIVD 102 (142)
Q Consensus 85 vrVTN~~tGksv~VrIvD 102 (142)
..++| +|.++.+.+-|
T Consensus 86 ~~l~N--~Ghtv~v~~~~ 101 (284)
T PLN02202 86 ATLVN--HVCNVAMFFGE 101 (284)
T ss_pred eEEEE--CCccEEEEEcC
Confidence 35666 67778777753
Done!