BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032390
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 116/141 (82%), Gaps = 1/141 (0%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
ITAID +RE YEIGLP I+KAGV+HKINFIES+A+ LD LL+ E+EGS+D+ FVDADK
Sbjct: 98 ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK 157
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
NY YHERLMKL+KVGGI YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA D
Sbjct: 158 PNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAAD 216
Query: 122 PRVQLSHVALGDGITICRRIF 142
PR+++ H+ LGDGIT CRR++
Sbjct: 217 PRIEIVHLPLGDGITFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 107/140 (76%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
I A+D+N+E YE+GLP+IKKAGVDHKI+F E AL VLD+++K +N GS+D+ FVDADK
Sbjct: 107 ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK 166
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
DNY NYH+RL+ L+KVGG+ YDNTLW G+V P + + R +L+LN++LA D
Sbjct: 167 DNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVD 226
Query: 122 PRVQLSHVALGDGITICRRI 141
PR+++ + +GDGITICRRI
Sbjct: 227 PRIEICMLPVGDGITICRRI 246
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
+ +V+ + E+G P+ ++A +HKI+ AL LD+LL E G+FD A VDADK
Sbjct: 97 VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADK 155
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
+N Y+ER ++LL+ GGI LW G V P + + + + +LN + D
Sbjct: 156 ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRD 209
Query: 122 PRVQLSHVALGDGITICRRI 141
RV +S + LGDG+T+ +I
Sbjct: 210 VRVYISLLPLGDGLTLAFKI 229
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
I A D + I +KAGV KI+ AL+ L+QL + + FD F+DADK
Sbjct: 100 IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADK 158
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLA 119
NY Y+E + LL+ GG+ V DN LW G V P+E + Q + NR LA
Sbjct: 159 RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLA 210
Query: 120 DDPRVQLSHVALGDGITIC 138
D RV++S + LGDG+T+
Sbjct: 211 QDERVRISVIPLGDGMTLA 229
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVD 58
+ D+N + P ++A +HKI AL L LL NEG FD+ F+D
Sbjct: 88 VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFID 143
Query: 59 ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 118
ADK NY NY+E +KL+ G+ DN W G V P + G +R+ I LN+ +
Sbjct: 144 ADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVI 197
Query: 119 ADDPRVQLSHVALGDGITICRRI 141
+D RV +S +A+ DG+ + + I
Sbjct: 198 KNDSRVFVSLLAIADGMFLVQPI 220
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 6 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 65
DV+ ++ + +KAG+ KI S A L +L+ ++ +D ++DADK N
Sbjct: 96 DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTD 154
Query: 66 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 125
Y+E +KLL+ GG+ DN L G VA E Q ++ Q I N+ + D RV
Sbjct: 155 LYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVD 208
Query: 126 LSHVALGDGITICRR 140
+ +GDG+T+ R+
Sbjct: 209 XILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEGS 51
I DV+ E + K+ G+++KI AL L L+ ++ S
Sbjct: 88 ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSS 147
Query: 52 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 111
D F+DADK+NY NY+ ++KLLK GG+ + DN LW G+VA Q P S I
Sbjct: 148 IDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGI 201
Query: 112 LDLNRSLADDPRVQLSHVALGDGITICRR 140
N + +D V +S V + DG+++ R+
Sbjct: 202 RKFNELVYNDSLVDVSLVPIADGVSLVRK 230
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
I +I+ + YE +K G++ +I + +AL + ++L Y FD F+DA K
Sbjct: 81 IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP----LFDVLFIDAAK 136
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL-NRSLAD 120
Y + + ++ GG+ + DN L+ G VA E +H R +D N+ L +
Sbjct: 137 GQYRRFFDXYSPXVRPGGLILSDNVLFRGLVA---ETDIEHKRHKQLATKIDTYNQWLLE 193
Query: 121 DPRVQLSHVALGDGITIC 138
P+ +GDGI I
Sbjct: 194 HPQYDTRIFPVGDGIAIS 211
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDA 59
+ ++ + + +I I++A ++ ++ AL L Q+ ENE FD+ F+DA
Sbjct: 86 VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDA 141
Query: 60 DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSL 118
DK N Y E +KL + G + + DN V E +V D+ R Q I +
Sbjct: 142 DKQNNPAYFEWALKLSRPGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELI 194
Query: 119 ADDPRV 124
A +PRV
Sbjct: 195 AAEPRV 200
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 19 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 78
++ AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 79 GIAVYDNTLWGGTVAVPE 96
+ + DN + G V P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
+T I+ N + + ++++ IE AL + + N+ +D F+DA K
Sbjct: 98 VTTIERNETXIQYAKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAK 152
Query: 62 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
+ E LLK G+ + DN L+ G V+ + R ++ + D N L
Sbjct: 153 AQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQ 211
Query: 122 PRVQLSHVALGDGITIC 138
P + + + DG+ I
Sbjct: 212 PGYTTNFLNIDDGLAIS 228
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
+ I++N + I ++ AGV K+ + + ++ QL K + + + D F+D K
Sbjct: 85 LITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWK 143
Query: 62 DNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 107
D Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 144 DRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
+ I++N + I ++ AGV K+ + + ++ QL K + + + D F+D K
Sbjct: 88 LITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWK 146
Query: 62 DNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 107
D Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 147 DRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 61
+ I++N + I ++ AG+ K+ + + ++ QL K + + + D F+D K
Sbjct: 85 LITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWK 143
Query: 62 DNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 107
D Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 144 DRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 108 RQAILDLNRSLADDPRVQLSHV 129
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|3FTT|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
From Staphylococcus Aureus
Length = 199
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 66 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 94
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|3V4E|A Chain A, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|B Chain B, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
pdb|3V4E|C Chain C, Crystal Structure Of The Galactoside O-Acetyltransferase
In Complex With Coa
Length = 202
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 66 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 94
N+H R K G I + NT +GG VAV
Sbjct: 120 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 148
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 81 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 121
A YD V PEE P+ F G +A+ + SL D+
Sbjct: 221 AAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDE 261
>pdb|4DCL|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T308, Crystallized In Space Group F23
Length = 207
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 66 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 94
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|4EGG|A Chain A, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|B Chain B, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|C Chain C, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|D Chain D, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|E Chain E, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
pdb|4EGG|F Chain F, Computationally Designed Self-Assembling Tetrahedron
Protein, T310
Length = 207
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 66 NYHERLMKLLKVGGIAVYDNTLWGGTVAV 94
N+H R K G I + NT +GG VAV
Sbjct: 117 NFHHRNEGFEKAGPIHIGSNTWFGGHVAV 145
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 69 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 124
E+ ++ K+ ++D L GG+ +P+ Q + D+F G DLN+S+ D V
Sbjct: 342 EKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGR------DLNKSINPDEAV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,519
Number of Sequences: 62578
Number of extensions: 182460
Number of successful extensions: 515
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 37
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)