BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032392
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 103/146 (70%), Gaps = 10/146 (6%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRK----PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 56
M+E V + K+A DK S+ RK LKV+VQ+NTSGEESK G+ PS + IVEH+
Sbjct: 113 MLETVDSVKLA---DKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHIN 169
Query: 57 LRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 113
+CPNLEF GLMTIG D + P +F+ LL+ R E+CK L + DQ ELSMGMS DF
Sbjct: 170 AKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADF 229
Query: 114 EQAIEMGSTSVRIGSTIFGPREYAKK 139
+ A+E+GST+VRIGSTIFG R+Y+KK
Sbjct: 230 QHAVEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 104/143 (72%), Gaps = 4/143 (2%)
Query: 1 MVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
M+E V + K+A+ ++ + G +PLKV+VQ+NTSGE+SK G+ PS + +VEH++ C
Sbjct: 113 MLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASC 172
Query: 60 PNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA 116
P+LEF GLMTIG D + P +F+ LL R E+C+ LG+ +Q ELSMGMS DF+ A
Sbjct: 173 PSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHA 232
Query: 117 IEMGSTSVRIGSTIFGPREYAKK 139
IE+GST+VRIGSTIFG R+Y+KK
Sbjct: 233 IEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 4/143 (2%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
++E V + K+A ++ + G + LKV+VQ+NTSGEESK G+ PS + IVEH+ +C
Sbjct: 113 VLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKC 172
Query: 60 PNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA 116
PNLEF GLMTIG D + P +F+ LL+ R E+CK L + DQ ELSMGMS DF+ A
Sbjct: 173 PNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHA 232
Query: 117 IEMGSTSVRIGSTIFGPREYAKK 139
IE+GST+VRIGS IFG R+Y+KK
Sbjct: 233 IEVGSTNVRIGSMIFGERDYSKK 255
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 101/143 (70%), Gaps = 4/143 (2%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
M+E V + K+A+ ++ A G + LKV+VQ+NTSGE SK G+ P+ +VEH+ +C
Sbjct: 113 MLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKC 172
Query: 60 PNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA 116
P+LEF GLMTIG D + P +F+ LL+ R E+C+ LG +Q ELSMGMS DF+ A
Sbjct: 173 PSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHA 232
Query: 117 IEMGSTSVRIGSTIFGPREYAKK 139
IE+GST+VRIGSTIFG R+Y+KK
Sbjct: 233 IEVGSTNVRIGSTIFGERDYSKK 255
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 13/153 (8%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLK----------VLVQVNTSGEESKSGIDPSSCLG 50
+VE V N+KI + L K++ N +++QVNTSGEESKSG P CL
Sbjct: 103 VVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLD 162
Query: 51 IVEHV--RLRCPN-LEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM 107
+V+H C N L F GLMTIG P+ T +F+ L++C+ + K L + D ELSM
Sbjct: 163 LVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSM 222
Query: 108 GMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 140
GMS DFE AIE GSTSVR+GS IFG R+Y+ K+
Sbjct: 223 GMSHDFEPAIEFGSTSVRVGSAIFGERDYSNKK 255
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 2 VEGVGNEKIANHLDKAVSNLGRK--PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
VE V EK A DK S G PL+VLVQVNTSGE++K GI+ + E +R C
Sbjct: 102 VETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKEC 161
Query: 60 PNLEFSGLMTIGMPDYT-STPEN--FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA 116
NL+F G MTIG D + ++ EN F L R + G + D ELSMGMS DF QA
Sbjct: 162 QNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQA 221
Query: 117 IEMGSTSVRIGSTIFGPREYAKK 139
I G+TSVR+GS +FG REY K
Sbjct: 222 IHQGATSVRVGSKLFGAREYKNK 244
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 9/141 (6%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
V + EKIA L + + PL+VL+QVNTSGE SKSGI+P + E + R P
Sbjct: 100 WVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELIS-RLP 157
Query: 61 NLEFSGLMTI--GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCE-LSMGMSGDFEQAI 117
NL GLM+I +PDY + F L AE+ + L Q + LSMGMSGD + AI
Sbjct: 158 NLTLRGLMSIPENVPDYPAQLAAFTQL----AELQQQLAQKYPQIDTLSMGMSGDMQAAI 213
Query: 118 EMGSTSVRIGSTIFGPREYAK 138
E GST VRIG+ IFG R+Y++
Sbjct: 214 EAGSTIVRIGTAIFGERDYSR 234
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 1 MVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
V + KIA L D+ S L KPL+VL+QVNTSGE SKSG+ + + E + R
Sbjct: 100 WVHTIDRTKIAQRLNDQRPSEL--KPLQVLIQVNTSGEASKSGVTEAEVFELAELIS-RL 156
Query: 60 PNLEFSGLMTI--GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI 117
PNL GLM+I + DY S F+ L + + + LSMGMSGD AI
Sbjct: 157 PNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTLEAQFPEIDT---LSMGMSGDMTAAI 213
Query: 118 EMGSTSVRIGSTIFGPREYA 137
E GST VRIG+ IFG R+Y+
Sbjct: 214 EAGSTMVRIGTAIFGARDYS 233
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
++ + +KIA+ L++ + +KPL VL+Q+N S E+SKSGI P+ L + + ++ P
Sbjct: 97 WMQTLDRKKIADRLNEQRPHY-KKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQ-NLP 154
Query: 61 NLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
+L GLM I P D + + F + + ++ +AL A+ LSMGM+ D AI+
Sbjct: 155 HLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQALPDAQIDT-LSMGMTDDMASAIQ 213
Query: 119 MGSTSVRIGSTIFGPREYAK 138
GST VRIG+ IFG R+Y+K
Sbjct: 214 CGSTMVRIGTAIFGARDYSK 233
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 68
KIA+ L++ + PL VL+Q+N S EESKSGI P L + +H+ P+L GLM
Sbjct: 105 KIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHIE-NLPHLCLRGLM 162
Query: 69 TIGMP-DYTSTPEN-FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRI 126
I P D + EN FR +L ++ + L + LSMGM+ D AI+ GST VRI
Sbjct: 163 AIPAPTDNIAEQENAFRKMLELFEQLKQVLPNQQIDT-LSMGMTDDMPSAIKCGSTMVRI 221
Query: 127 GSTIFGPREYAKKQ 140
G+ IFG R Y+ Q
Sbjct: 222 GTAIFGARNYSTSQ 235
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 9/113 (7%)
Query: 28 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN----FR 83
VL++VN GEE+K G++P + + E+ L PN++ GLMTI P Y PE+ FR
Sbjct: 121 VLIEVNVGGEETKGGVEPENLKELFEYT-LELPNVKVLGLMTI--PPYLENPEDVRPYFR 177
Query: 84 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136
L R E+ + +A LSMGMS DFE AIE G+T VRIG+ +FG R+Y
Sbjct: 178 KLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 61
+E + EK A ++ A L + PL V +QVNTSGEE+K G+ PS L + + V+
Sbjct: 93 IETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQVQ-DMKY 150
Query: 62 LEFSGLMTIGMPDYTSTPE---NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
L GLMTIG + + +F+ L + R + LG+ +LSMGMS D+ AI+
Sbjct: 151 LRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIP---LQLSMGMSSDYLLAIK 207
Query: 119 MGSTSVRIGSTIFGPR 134
GS SVR+GS+IFG R
Sbjct: 208 YGSDSVRVGSSIFGSR 223
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 84
PL VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 85 LLNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 139
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 84
PL VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 85 LLNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 139
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 84
PL VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 85 LLNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 139
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
V V KIA L + G PL V +QVN SGE SKSG P + E V+ + P
Sbjct: 96 WVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVK-QLP 153
Query: 61 NLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMG 120
NL GLM I P T E L + LSMGMS D E AI G
Sbjct: 154 NLRLRGLMAIPEP----TAERAAQHAAFARLRELLLDLNLGLDTLSMGMSDDLEAAIGEG 209
Query: 121 STSVRIGSTIFGPREY 136
+T VRIG+ +FG R+Y
Sbjct: 210 ATWVRIGTALFGARDY 225
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPE 80
P+ VQ+NTS E+ KSG++ + + V L C ++ +GLMTIG + + + E
Sbjct: 136 PILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKE 195
Query: 81 N--FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 134
N F TL+ + ++ G + +LSMGMS DF +AI G+ VRIG+ IFG R
Sbjct: 196 NRDFATLVEWKKKIDAKFGTS---LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
++ + + K+A ++K LG L L+QVN++ EESKSG+ P L + C
Sbjct: 96 LLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCK 154
Query: 61 NLEFSGLMTIG--MPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
L+ GLM IG D T ++F T K ++ LSMGMS DFE AI
Sbjct: 155 RLKLKGLMCIGAHTDDETKIEKSFTT-------TKKLFDQIKNASVLSMGMSDDFELAIA 207
Query: 119 MGSTSVRIGSTIF 131
G+ +RIGS +F
Sbjct: 208 CGANLLRIGSFLF 220
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
++ + + K+A ++K LG L L+QVN++ EESKSG+ P L I + C
Sbjct: 96 LLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCK 154
Query: 61 NLEFSGLMTIG--MPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
+L+ GLM IG D ++F T K ++ LSMGMS DFE AI
Sbjct: 155 HLKLKGLMCIGAHTDDEKEIEKSFIT-------TKKLFDQIKNASVLSMGMSDDFELAIA 207
Query: 119 MGSTSVRIGSTIF 131
G+ +RIGS +F
Sbjct: 208 CGANLLRIGSFLF 220
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 14 LDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG-- 71
L K + ++ VQVNTS E SK G+ + ++ + ++ +GLMT+
Sbjct: 103 LAKEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPL 161
Query: 72 MPDYTSTPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTI 130
D FR+L R +V K L C ELSMGMS DFE AIE G+T +RIGS++
Sbjct: 162 TDDQDQIRSCFRSLRELRDQVQK-LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSL 220
Query: 131 FG 132
G
Sbjct: 221 VG 222
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 24 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC---PNLEFSGLMTIGMPDYTSTPE 80
+PL+V VQ++ G+ S+ G++ ++ G V+ V + +LE GLM G+P P+
Sbjct: 144 QPLQVYVQISLDGDISRGGVNVTAP-GAVDRVCAQVEESKSLELVGLM--GIPPLGWNPD 200
Query: 81 NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 133
+ R E + L D LS GMS DFE A++ GST VR+G+ + GP
Sbjct: 201 --QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 5 VGNEKIANHLDKAV------SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR 58
V + ++ LD+AV G + L+V VQV+ G+ S+ G+D S+ G V+ +
Sbjct: 121 VDSSRLVTALDRAVVAALAEHRRGER-LRVYVQVSLDGDGSRGGVD-STTPGAVDRI--- 175
Query: 59 CPN------LEFSGLMTIGMPDYTSTP-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111
C LE GLM G+P P E F L ++E + M LS GMS
Sbjct: 176 CAQVQESEGLELVGLM--GIPPLDWDPDEAFDRL---QSEHNRVRAMFPHAIGLSAGMSN 230
Query: 112 DFEQAIEMGSTSVRIGSTIFGPR 134
D E A++ GST VR+G+ + GPR
Sbjct: 231 DLEVAVKHGSTCVRVGTALLGPR 253
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 5 VGNEKIANHLDKAV------SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR 58
V + ++ LD+AV G + L+V VQV+ G+ S+ G+D S+ G V+ +
Sbjct: 121 VDSSRLVTALDRAVVAALAEHRRGER-LRVYVQVSLDGDGSRGGVD-STTPGAVDRI--- 175
Query: 59 CPN------LEFSGLMTIGMPDYTSTP-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111
C LE GLM G+P P E F L ++E + M LS GMS
Sbjct: 176 CAQVQESEGLELVGLM--GIPPLDWDPDEAFDRL---QSEHNRVRAMFPHAIGLSAGMSN 230
Query: 112 DFEQAIEMGSTSVRIGSTIFGPR 134
D E A++ GST VR+G+ + GPR
Sbjct: 231 DLEVAVKHGSTCVRVGTALLGPR 253
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 20/142 (14%)
Query: 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP- 60
+ V N IA LD+ L + P + L+Q+ +E+KSG E ++L P
Sbjct: 87 IHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSG-------WTREELKLDLPQ 138
Query: 61 -----NLEFSGLMTIGMPDYTSTPE---NFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 112
NL+ GLMTI +P S + F L N + + ++ ELSMGMSGD
Sbjct: 139 LELLKNLKICGLMTI-LPLGLSPGDRQLTFGELKNLATAINQQSSLS--LTELSMGMSGD 195
Query: 113 FEQAIEMGSTSVRIGSTIFGPR 134
+ +AI G+T +R+G+ +FG R
Sbjct: 196 YPEAIAAGATMIRLGTILFGDR 217
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 21 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE 80
G+ P +L + N GE K G+ P ++ VR LE GLM M Y
Sbjct: 109 WGQAPAVLLQRHN--GEGQKHGVLPDDLPAVLREVR--ATGLEVRGLMA--MAPYDDEAR 162
Query: 81 NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 131
+ + A + LG+ ELSMGMSGD+ A+ G+T VR+G ++F
Sbjct: 163 AAQVFADT-ARQAQDLGL----VELSMGMSGDYPLAVAAGATLVRVGRSLF 208
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 2 VEGVGNEKIANHLDKAVS-NLGR-----KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 55
V V +EKIA L + V+ L R L +Q++ G+ S+ G S + + +
Sbjct: 85 VHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCI 144
Query: 56 RLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGDFE 114
+L F GLM + P PE + R +V L D+ E S GMSGD
Sbjct: 145 S-DTTHLRFEGLMCV--PPLGWGPE--KAFSQAR-DVLSGLEEHFDRSLEFSAGMSGDLV 198
Query: 115 QAIEMGSTSVRIGSTIFGPREYA 137
AI+ GST VR+G+ I G R A
Sbjct: 199 AAIKHGSTIVRVGTEILGNRPLA 221
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 62
+ + EKIA L+K P+ VL+Q+N S E +K+GI + + + + L PNL
Sbjct: 99 QTIDREKIAILLNKYREKKSF-PMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNL 156
Query: 63 EFSGLMTIGMPDY----TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
F G+M MP+ +N++ E+ K + LS+G S D E A+
Sbjct: 157 NFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDT---LSLGTSFDIENALL 211
Query: 119 MGSTSVRIGSTIF 131
S +RIG IF
Sbjct: 212 FHSNMIRIGRFIF 224
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 3 EGVGNEKIANHLDKAV-SNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCP 60
+ V EKIA L+K NL P+ VL+Q+N E ++ ID L + L P
Sbjct: 74 QTVDREKIAVLLNKFRPKNLP--PINVLIQINNLKELQNNRYIDQYQELA---QLILSMP 128
Query: 61 NLEFSGLMTIGMPDY-TSTPENFRTLLNCRAEVCKAL-GMAEDQCE----LSMGMSGDFE 114
NL G+M +P T+ EN N + E K + + Q LS+G S D +
Sbjct: 129 NLNLRGIM--AVPSIKTNVIEN-----NLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIK 181
Query: 115 QAIEMGSTSVRIGSTIFG 132
+++ S VRIG IF
Sbjct: 182 ESLLATSNMVRIGRNIFN 199
>sp|B3EPX5|RIMO_CHLPB Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
phaeobacteroides (strain BS1) GN=rimO PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67
E I ++LD V ++ + L + K GID +G++E +R R PN+
Sbjct: 249 ENICDYLDMPVQHICDRILASM----------KRGIDKQGTIGLLESIRKRNPNIRLRTT 298
Query: 68 MTIGMP 73
M +G P
Sbjct: 299 MIVGYP 304
>sp|B4S8Z6|RIMO_PROA2 Ribosomal protein S12 methylthiotransferase RimO
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=rimO PE=3 SV=1
Length = 433
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69
I N+LD V ++ + LK + + GID +G++E +R + P++ M
Sbjct: 244 ICNYLDMPVQHISDRILKSM----------QRGIDKKGTIGLLESIRKKNPDIRLRTTMI 293
Query: 70 IGMPDYTSTPENFRTLLNCRAEV 92
+G P T F LL A++
Sbjct: 294 VGYP--GETDREFDELLEFVAQL 314
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 26 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP----EN 81
L L+Q+N D + + + + NL G+M MP + +T ++
Sbjct: 118 LNTLIQINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNTYLEQIQS 174
Query: 82 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 131
++ ++ ++ K D +S+G S D + A+ GST +RIGS+IF
Sbjct: 175 YK-YIHLYFDILKKKYTYID--TVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>sp|B3EDL2|RIMO_CHLL2 Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=rimO PE=3
SV=1
Length = 429
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67
E + N+LD + ++ + L+ + GID + + ++E +R R P++
Sbjct: 238 ENVCNYLDMPLQHISDRILRSM----------NRGIDSTGTVRLIESIRQRNPDIRLRTT 287
Query: 68 MTIGMPDYTSTPENFRTLLNCRAE 91
M G P T E F LL AE
Sbjct: 288 MIAGYP--GETGEEFEELLQFVAE 309
>sp|P35759|VA5_POLEX Venom allergen 5 OS=Polistes exclamans PE=1 SV=2
Length = 226
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 52 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111
V++ ++RCP SG+ T+ ++ P NC +V K++G E++ +L +
Sbjct: 22 VDYCKIRCP----SGIHTVCQYGESTKPSK-----NCAGKVIKSVGPTEEEKKLIVSEHN 72
Query: 112 DFEQAIEMG 120
F Q + G
Sbjct: 73 RFRQKVAQG 81
>sp|Q8RB70|HRCA_THETN Heat-inducible transcription repressor HrcA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=hrcA PE=3 SV=1
Length = 343
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 21/136 (15%)
Query: 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 66
N+KIA +KA+ N K LK +T G+ + + +++ + L L+ +
Sbjct: 181 NDKIAGKSEKAIFNFLEKELK-----DTLGDMAFMADE------LIKTILLSLKQLQETD 229
Query: 67 LMTIG------MPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
+ T G P+Y + +NF +LL+ ++ + + L +D ++ +G FE+ E
Sbjct: 230 VYTDGTLHILDFPEYKDLNKAKNFLSLLDNKSLLNEVLEPVDDFVDVKIGRENRFEEMRE 289
Query: 119 MG--STSVRIGSTIFG 132
+ T+ +I + G
Sbjct: 290 LSVIKTTYKINDRVVG 305
>sp|Q2PG53|HMOX2_MACFA Heme oxygenase 2 OS=Macaca fascicularis GN=HMOX2 PE=2 SV=1
Length = 316
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 7 NEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHV 55
N +I N LD+A S L R+ L+ V+ +GE+ K ++ SSC
Sbjct: 230 NMQIFNELDQAGSTLARETLEDGFPVHDGKGDMRKCPFYAGEQDKGALEGSSCPFRTAMA 289
Query: 56 RLRCPNLEF 64
LR P+L+F
Sbjct: 290 VLRKPSLQF 298
>sp|Q01605|PHOE_CITFR Outer membrane pore protein E OS=Citrobacter freundii GN=phoE PE=2
SV=1
Length = 351
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLV--QVNTSGEESKSGIDPSSCLGI 51
+EGVGNE + N++D + K + V ++N ++K GI+ + +
Sbjct: 294 IEGVGNEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLGINNDDIVAV 345
>sp|P17469|DNBI_HHV1F Major DNA-binding protein OS=Human herpesvirus 1 (strain F) GN=DBP
PE=3 SV=1
Length = 1196
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 71 GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 129
G DYT P + + A +C+ LG+ D+ L + ++ F++A+ + +T + +G +
Sbjct: 124 GFSDYTPRPGDLKHETTGEA-LCERLGLDPDRALLYLVVTEGFKEAVSINNTFLHLGGS 181
>sp|Q2SEP8|HUTI_HAHCH Imidazolonepropionase OS=Hahella chejuensis (strain KCTC 2396)
GN=hutI PE=3 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 59 CPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 113
CP +M +G + TPE TL KALGM + L+ GM+ DF
Sbjct: 319 CPLASMRLMMNMGCTFFGMTPEE--TLAGVTRHGAKALGMQDRIGHLAPGMAADF 371
>sp|A9KQ90|PUR7_CLOPH Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=purC PE=3 SV=1
Length = 235
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 3 EGVGNEKIANHLDK--AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
EGV I D+ AV + PL+V+++ ++G +K LGI E +L CP
Sbjct: 64 EGVPTHYIEELSDRETAVKKVQIVPLEVIIRNVSAGSFAKK-------LGIEEGRKLLCP 116
Query: 61 NLEFS 65
LEFS
Sbjct: 117 TLEFS 121
>sp|Q01606|PHOE_KLEOX Outer membrane pore protein E OS=Klebsiella oxytoca GN=phoE PE=2
SV=1
Length = 349
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLV--QVNTSGEESKSGIDPSSCLGI 51
+EGVG+E + N++D V+ K + V ++N ++K GI+ + +
Sbjct: 292 IEGVGSEDLVNYIDVGVTYYFNKNMNAFVDYKINQLKSDNKLGINDDDIVAV 343
>sp|Q05109|VA5_POLAN Venom allergen 5 (Fragment) OS=Polistes annularis PE=1 SV=1
Length = 209
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 52 VEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111
V++ +++CP SG+ T+ ++ P NC +V K++G E++ +L +
Sbjct: 5 VDYCKIKCP----SGIHTVCQYGESTKPSK-----NCAGKVIKSVGPTEEEKKLIVSEHN 55
Query: 112 DFEQAIEMG 120
F Q + G
Sbjct: 56 RFRQKVAQG 64
>sp|Q0ACK8|SPEA_ALHEH Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=speA PE=3 SV=1
Length = 628
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 33 NTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGM----PDYTSTPENFRTLLN 87
NT GE+SK G+ + L +V+ RLR L++ L+ + P+ R
Sbjct: 209 NTGGEKSKFGLTAAQALAVVD--RLRAAGCLDWLRLLHFHLGSQIPNIRDIRRGMREAAR 266
Query: 88 CRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137
AE+ +ALG + ++ G+ D+E GS S S + EYA
Sbjct: 267 YYAEL-RALGAPVETVDVGGGLGVDYE-----GSRSRSFCSMNYTVAEYA 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,066,147
Number of Sequences: 539616
Number of extensions: 1989997
Number of successful extensions: 4728
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4675
Number of HSP's gapped (non-prelim): 48
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)