Query 032392
Match_columns 142
No_of_seqs 127 out of 1123
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 6.2E-36 1.3E-40 227.2 13.8 131 1-136 96-228 (228)
2 cd06822 PLPDE_III_YBL036c_euk 100.0 4.5E-34 9.8E-39 219.5 16.5 130 1-132 92-227 (227)
3 KOG3157 Proline synthetase co- 100.0 2.8E-32 6.2E-37 203.7 12.6 139 1-140 100-243 (244)
4 TIGR00044 pyridoxal phosphate 100.0 1.7E-31 3.7E-36 205.4 15.2 131 1-134 97-229 (229)
5 cd06824 PLPDE_III_Yggs_like Py 100.0 2.2E-29 4.8E-34 192.9 14.7 128 1-133 95-224 (224)
6 PF01168 Ala_racemase_N: Alani 100.0 3.4E-29 7.5E-34 189.7 12.7 128 1-135 87-218 (218)
7 cd00635 PLPDE_III_YBL036c_like 100.0 1.1E-28 2.3E-33 188.7 15.2 127 2-132 94-222 (222)
8 cd06821 PLPDE_III_D-TA Type II 99.9 2.8E-25 6.2E-30 180.1 11.5 128 2-136 106-242 (361)
9 TIGR00492 alr alanine racemase 99.9 2.3E-24 5E-29 175.4 13.3 130 1-137 96-230 (367)
10 cd06815 PLPDE_III_AR_like_1 Ty 99.9 1.9E-23 4.2E-28 169.5 14.9 129 2-136 94-229 (353)
11 cd06820 PLPDE_III_LS_D-TA_like 99.9 1E-23 2.2E-28 170.5 12.5 129 2-137 99-235 (353)
12 cd00430 PLPDE_III_AR Type III 99.9 3E-23 6.5E-28 168.6 13.9 129 2-137 96-228 (367)
13 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 2.4E-23 5.2E-28 167.9 12.1 128 2-137 89-228 (345)
14 PRK00053 alr alanine racemase; 99.9 8.2E-23 1.8E-27 166.1 13.2 126 1-137 98-227 (363)
15 cd06814 PLPDE_III_DSD_D-TA_lik 99.9 3.8E-23 8.2E-28 169.4 10.7 128 2-136 111-252 (379)
16 PRK13340 alanine racemase; Rev 99.9 1.5E-22 3.3E-27 167.0 13.9 127 2-134 135-267 (406)
17 cd06826 PLPDE_III_AR2 Type III 99.9 2.3E-22 4.9E-27 163.9 13.6 131 2-136 96-230 (365)
18 cd06817 PLPDE_III_DSD Type III 99.9 2.7E-22 5.9E-27 164.9 13.4 129 2-137 108-259 (389)
19 cd06825 PLPDE_III_VanT Type II 99.9 1.3E-21 2.9E-26 159.7 12.9 125 1-137 95-226 (368)
20 cd06811 PLPDE_III_yhfX_like Ty 99.9 3.1E-21 6.8E-26 158.2 14.3 129 2-137 123-266 (382)
21 cd06819 PLPDE_III_LS_D-TA Type 99.9 4.6E-21 9.9E-26 155.2 13.3 128 2-136 103-241 (358)
22 PRK03646 dadX alanine racemase 99.9 6.1E-21 1.3E-25 155.2 12.5 122 1-137 95-218 (355)
23 cd06808 PLPDE_III Type III Pyr 99.8 1.1E-20 2.4E-25 141.7 11.7 122 2-128 84-211 (211)
24 cd06827 PLPDE_III_AR_proteobac 99.8 4.7E-20 1E-24 150.0 12.9 121 2-137 94-218 (354)
25 cd06818 PLPDE_III_cryptic_DSD 99.8 5.1E-20 1.1E-24 150.9 12.9 130 2-136 102-250 (382)
26 cd06812 PLPDE_III_DSD_D-TA_lik 99.8 7.1E-20 1.5E-24 149.2 13.1 128 2-137 102-241 (374)
27 PRK11930 putative bifunctional 99.8 7.4E-20 1.6E-24 162.1 13.9 129 2-136 553-686 (822)
28 COG0787 Alr Alanine racemase [ 99.8 9.3E-20 2E-24 148.0 12.3 124 2-138 100-227 (360)
29 cd06813 PLPDE_III_DSD_D-TA_lik 99.8 1.2E-18 2.5E-23 143.2 12.6 128 2-136 107-266 (388)
30 COG3616 Predicted amino acid a 99.6 2.7E-15 5.8E-20 122.2 11.4 128 2-137 115-246 (368)
31 cd06839 PLPDE_III_Btrk_like Ty 99.5 5.9E-14 1.3E-18 114.4 9.0 107 2-112 100-220 (382)
32 cd06810 PLPDE_III_ODC_DapDC_li 99.5 2.8E-13 6.1E-18 109.9 11.9 102 2-109 94-209 (368)
33 cd06828 PLPDE_III_DapDC Type I 99.5 1E-12 2.2E-17 106.8 12.5 104 2-110 97-215 (373)
34 cd06842 PLPDE_III_Y4yA_like Ty 99.4 2E-12 4.4E-17 107.4 12.9 105 2-111 105-214 (423)
35 PLN02537 diaminopimelate decar 99.4 2.7E-12 5.8E-17 106.1 12.4 103 2-109 111-229 (410)
36 TIGR01048 lysA diaminopimelate 99.4 3.5E-12 7.5E-17 105.4 12.3 103 3-110 120-237 (417)
37 COG3457 Predicted amino acid r 99.4 5.6E-12 1.2E-16 100.2 11.8 127 2-134 96-230 (353)
38 cd06843 PLPDE_III_PvsE_like Ty 99.4 7.7E-12 1.7E-16 102.2 12.6 103 3-109 95-212 (377)
39 cd06841 PLPDE_III_MccE_like Ty 99.3 1.8E-11 3.9E-16 100.1 11.7 102 2-109 102-211 (379)
40 TIGR03099 dCO2ase_PEP1 pyridox 99.3 6.4E-12 1.4E-16 103.3 8.7 104 2-111 117-235 (398)
41 cd06830 PLPDE_III_ADC Type III 99.1 1.1E-09 2.4E-14 90.7 12.4 103 2-109 115-232 (409)
42 COG0019 LysA Diaminopimelate d 99.1 1.5E-09 3.3E-14 89.7 11.5 102 3-110 122-238 (394)
43 cd00622 PLPDE_III_ODC Type III 99.1 1.7E-09 3.6E-14 87.8 10.7 97 3-109 95-200 (362)
44 PF02784 Orn_Arg_deC_N: Pyrido 99.0 5.7E-09 1.2E-13 80.9 10.2 100 2-109 89-204 (251)
45 PRK05354 arginine decarboxylas 98.8 5.4E-08 1.2E-12 84.7 12.4 102 2-108 174-290 (634)
46 PLN02439 arginine decarboxylas 98.8 6.1E-08 1.3E-12 83.4 12.4 102 2-108 111-227 (559)
47 TIGR01273 speA arginine decarb 98.8 8.2E-08 1.8E-12 83.5 12.5 102 2-108 167-283 (624)
48 PRK11165 diaminopimelate decar 98.7 3E-07 6.5E-12 76.6 13.1 100 2-112 118-229 (420)
49 cd06836 PLPDE_III_ODC_DapDC_li 98.7 4.2E-07 9.1E-12 74.6 12.0 101 3-109 96-215 (379)
50 cd06831 PLPDE_III_ODC_like_AZI 98.5 7E-07 1.5E-11 73.9 9.6 98 2-109 105-211 (394)
51 TIGR01047 nspC carboxynorsperm 98.4 4.7E-06 1E-10 68.6 12.0 95 2-109 94-200 (380)
52 cd06840 PLPDE_III_Bif_AspK_Dap 98.4 6.1E-06 1.3E-10 67.6 12.6 95 3-108 106-212 (368)
53 PRK08961 bifunctional aspartat 98.1 5.5E-05 1.2E-09 68.3 13.0 95 3-108 597-703 (861)
54 KOG0622 Ornithine decarboxylas 97.9 0.00017 3.8E-09 59.7 10.4 98 2-109 148-254 (448)
55 cd06829 PLPDE_III_CANSDC Type 97.8 0.00032 6.8E-09 57.0 10.5 61 2-73 92-164 (346)
56 COG1166 SpeA Arginine decarbox 94.7 0.16 3.5E-06 44.0 7.6 103 2-109 190-307 (652)
57 PRK08091 ribulose-phosphate 3- 92.8 3.7 8E-05 31.8 12.4 69 64-135 143-215 (228)
58 COG0167 PyrD Dihydroorotate de 92.0 3.5 7.7E-05 33.4 10.8 112 7-136 145-279 (310)
59 COG0036 Rpe Pentose-5-phosphat 89.2 6.7 0.00015 30.3 9.6 73 62-137 132-207 (220)
60 cd06533 Glyco_transf_WecG_TagA 87.7 5 0.00011 29.3 7.9 52 4-68 28-79 (171)
61 cd02803 OYE_like_FMN_family Ol 87.0 9 0.00019 30.5 9.7 117 12-138 196-322 (327)
62 PF07476 MAAL_C: Methylasparta 86.2 7.7 0.00017 30.2 8.4 113 9-129 51-170 (248)
63 PRK08745 ribulose-phosphate 3- 85.3 15 0.00033 28.2 11.4 71 62-135 133-207 (223)
64 TIGR00696 wecB_tagA_cpsF bacte 85.2 6.6 0.00014 29.1 7.5 79 6-109 32-110 (177)
65 PRK14057 epimerase; Provisiona 84.4 18 0.0004 28.5 11.6 69 64-135 157-229 (254)
66 KOG3111 D-ribulose-5-phosphate 83.6 18 0.00038 27.7 10.5 72 61-137 134-207 (224)
67 cd02932 OYE_YqiM_FMN Old yello 83.3 13 0.00027 30.1 9.0 118 12-139 209-332 (336)
68 cd04733 OYE_like_2_FMN Old yel 83.1 22 0.00047 28.8 10.3 119 12-140 204-335 (338)
69 cd02930 DCR_FMN 2,4-dienoyl-Co 82.1 10 0.00022 30.9 8.1 117 12-138 192-317 (353)
70 cd04734 OYE_like_3_FMN Old yel 81.6 25 0.00054 28.6 10.1 117 13-138 197-326 (343)
71 PRK08883 ribulose-phosphate 3- 81.1 22 0.00049 27.1 10.9 66 67-135 134-203 (220)
72 COG0386 BtuE Glutathione perox 80.2 11 0.00025 27.6 6.8 64 27-101 26-92 (162)
73 cd02929 TMADH_HD_FMN Trimethyl 80.0 16 0.00035 30.1 8.6 118 12-138 205-330 (370)
74 PLN02495 oxidoreductase, actin 79.5 21 0.00044 29.9 9.1 54 80-135 251-307 (385)
75 PF00834 Ribul_P_3_epim: Ribul 78.8 14 0.00031 27.9 7.3 71 60-133 126-200 (201)
76 PRK08005 epimerase; Validated 76.8 31 0.00067 26.3 9.8 67 64-136 131-200 (210)
77 COG1902 NemA NADH:flavin oxido 76.4 43 0.00092 27.7 10.7 116 14-137 206-328 (363)
78 PRK05286 dihydroorotate dehydr 75.1 35 0.00076 27.8 9.2 98 26-133 212-324 (344)
79 PF03808 Glyco_tran_WecB: Glyc 74.2 30 0.00064 25.2 7.8 52 5-69 31-82 (172)
80 COG3454 Metal-dependent hydrol 74.0 7.8 0.00017 31.9 5.0 33 40-73 136-168 (377)
81 COG4573 GatZ Predicted tagatos 72.0 22 0.00047 29.5 7.1 105 2-111 19-134 (426)
82 cd02931 ER_like_FMN Enoate red 71.6 52 0.0011 27.2 9.5 121 12-138 206-346 (382)
83 cd04741 DHOD_1A_like Dihydroor 70.2 53 0.0011 26.1 9.3 32 102-133 244-278 (294)
84 COG2100 Predicted Fe-S oxidore 69.5 65 0.0014 26.8 10.0 86 4-110 140-225 (414)
85 cd04738 DHOD_2_like Dihydrooro 68.8 60 0.0013 26.1 10.8 47 87-135 268-317 (327)
86 cd04747 OYE_like_5_FMN Old yel 67.5 70 0.0015 26.4 9.4 113 13-138 200-339 (361)
87 cd04735 OYE_like_4_FMN Old yel 65.4 40 0.00088 27.4 7.6 105 25-137 215-323 (353)
88 PRK09722 allulose-6-phosphate 61.9 72 0.0016 24.6 11.6 67 64-133 133-204 (229)
89 KOG1552 Predicted alpha/beta h 61.8 48 0.001 26.3 7.0 74 44-119 72-151 (258)
90 cd01304 FMDH_A Formylmethanofu 60.4 88 0.0019 27.5 9.0 49 4-60 204-254 (541)
91 PF03460 NIR_SIR_ferr: Nitrite 60.2 13 0.00029 22.5 3.1 46 7-56 22-67 (69)
92 KOG1436 Dihydroorotate dehydro 59.4 37 0.0008 28.0 6.1 99 24-135 251-368 (398)
93 PLN02489 homocysteine S-methyl 53.8 81 0.0018 25.7 7.4 63 2-69 186-249 (335)
94 PRK13523 NADPH dehydrogenase N 53.0 1.1E+02 0.0023 25.0 8.0 102 26-137 208-315 (337)
95 PF06415 iPGM_N: BPG-independe 52.8 1.1E+02 0.0023 23.7 8.9 79 7-93 44-125 (223)
96 PRK03692 putative UDP-N-acetyl 52.7 89 0.0019 24.3 7.2 27 41-68 111-137 (243)
97 COG3589 Uncharacterized conser 51.9 29 0.00062 28.7 4.4 77 50-129 17-100 (360)
98 COG4090 Uncharacterized protei 50.9 12 0.00025 26.9 1.8 31 34-68 93-123 (154)
99 COG3412 Uncharacterized protei 48.9 65 0.0014 22.8 5.3 61 6-72 10-70 (129)
100 cd02810 DHOD_DHPD_FMN Dihydroo 48.3 1.3E+02 0.0028 23.4 11.9 47 87-135 231-280 (289)
101 COG2040 MHT1 Homocysteine/sele 48.2 64 0.0014 26.1 5.8 64 2-71 153-217 (300)
102 COG1922 WecG Teichoic acid bio 48.2 80 0.0017 24.9 6.3 54 5-71 91-145 (253)
103 TIGR03821 AblA_like_1 lysine-2 47.4 45 0.00097 26.9 5.0 22 44-67 249-270 (321)
104 PRK10605 N-ethylmaleimide redu 47.1 1.6E+02 0.0035 24.2 10.3 109 13-138 215-332 (362)
105 PF05913 DUF871: Bacterial pro 45.4 26 0.00056 28.9 3.3 41 9-53 47-87 (357)
106 PRK05096 guanosine 5'-monophos 44.7 1.8E+02 0.0039 24.1 8.5 41 85-129 138-181 (346)
107 cd03174 DRE_TIM_metallolyase D 43.5 1.2E+02 0.0026 22.9 6.7 46 8-60 114-159 (265)
108 TIGR02066 dsrB sulfite reducta 42.4 1.9E+02 0.0041 23.7 8.8 50 5-59 40-89 (341)
109 PRK07534 methionine synthase I 42.2 1.6E+02 0.0035 24.0 7.5 50 2-53 150-199 (336)
110 cd02429 PTH2_like Peptidyl-tRN 42.1 91 0.002 21.6 5.2 42 2-45 59-100 (116)
111 COG4981 Enoyl reductase domain 41.4 92 0.002 27.7 6.0 51 7-64 160-216 (717)
112 PLN02334 ribulose-phosphate 3- 41.0 75 0.0016 24.1 5.1 66 62-134 140-209 (229)
113 PF03932 CutC: CutC family; I 40.5 1.5E+02 0.0034 22.4 6.6 24 43-67 66-89 (201)
114 PRK13776 formimidoylglutamase; 39.7 2E+02 0.0043 23.1 10.4 38 34-73 259-296 (318)
115 PF04748 Polysacc_deac_2: Dive 39.7 1.7E+02 0.0036 22.2 7.8 113 10-130 33-151 (213)
116 TIGR03822 AblA_like_2 lysine-2 38.8 1.3E+02 0.0029 24.1 6.5 23 43-67 242-264 (321)
117 PRK07738 flagellar protein Fla 38.7 1.1E+02 0.0023 21.3 5.1 51 10-64 51-113 (117)
118 PRK07188 nicotinate phosphorib 38.6 1.6E+02 0.0034 24.4 6.9 47 85-133 266-316 (352)
119 cd07939 DRE_TIM_NifV Streptomy 38.1 1.4E+02 0.003 23.1 6.3 42 9-59 110-151 (259)
120 PRK09485 mmuM homocysteine met 37.6 1.8E+02 0.0039 23.2 7.0 63 2-69 159-222 (304)
121 COG1029 FwdB Formylmethanofura 37.6 1.5E+02 0.0033 25.0 6.5 32 35-67 218-254 (429)
122 cd02933 OYE_like_FMN Old yello 37.6 2.2E+02 0.0048 23.1 10.2 110 14-138 209-325 (338)
123 COG2008 GLY1 Threonine aldolas 37.0 38 0.00083 27.9 3.0 25 4-33 145-169 (342)
124 cd07945 DRE_TIM_CMS Leptospira 36.8 1.7E+02 0.0036 23.2 6.6 45 9-59 115-159 (280)
125 PF00724 Oxidored_FMN: NADH:fl 36.5 1.5E+02 0.0032 24.0 6.4 118 14-138 206-332 (341)
126 TIGR01163 rpe ribulose-phospha 35.7 1.7E+02 0.0037 21.2 8.0 53 80-135 147-201 (210)
127 PF08013 Tagatose_6_P_K: Tagat 35.3 2.8E+02 0.0062 23.6 10.0 107 2-112 19-135 (424)
128 PRK05692 hydroxymethylglutaryl 35.2 1.6E+02 0.0036 23.3 6.4 48 8-59 119-167 (287)
129 PRK08255 salicylyl-CoA 5-hydro 35.2 3.5E+02 0.0075 24.6 10.1 112 15-136 609-726 (765)
130 PF09897 DUF2124: Uncharacteri 34.5 20 0.00044 25.9 1.0 31 34-68 88-118 (147)
131 PTZ00170 D-ribulose-5-phosphat 34.0 2.1E+02 0.0046 21.7 7.2 30 106-135 179-209 (228)
132 KOG0258 Alanine aminotransfera 33.6 1.6E+02 0.0034 25.2 6.1 47 4-56 197-245 (475)
133 cd07940 DRE_TIM_IPMS 2-isoprop 32.6 2.1E+02 0.0045 22.1 6.5 16 43-59 140-155 (268)
134 PF04308 DUF458: Protein of un 32.6 1.9E+02 0.0041 20.8 5.8 47 6-56 74-120 (144)
135 PRK13361 molybdenum cofactor b 32.5 2.6E+02 0.0056 22.3 8.0 54 7-70 46-99 (329)
136 PRK11170 nagA N-acetylglucosam 32.4 2.9E+02 0.0062 22.8 10.6 82 24-124 124-214 (382)
137 cd02940 DHPD_FMN Dihydropyrimi 31.8 2.6E+02 0.0056 22.1 10.1 34 102-135 253-289 (299)
138 cd07944 DRE_TIM_HOA_like 4-hyd 31.7 2.4E+02 0.0053 22.0 6.8 45 6-59 106-150 (266)
139 PRK08195 4-hyroxy-2-oxovalerat 31.5 2.4E+02 0.0053 22.9 6.9 13 44-56 142-154 (337)
140 TIGR01229 rocF_arginase argina 31.2 2.7E+02 0.0058 22.1 10.5 38 34-73 237-274 (300)
141 PRK11377 dihydroxyacetone kina 31.0 2.2E+02 0.0047 24.6 6.7 55 6-62 9-65 (473)
142 COG2159 Predicted metal-depend 30.8 1.7E+02 0.0037 23.2 5.8 57 9-73 144-202 (293)
143 cd08070 MPN_like Mpr1p, Pad1p 29.7 81 0.0017 21.5 3.4 33 39-73 49-82 (128)
144 PRK02048 4-hydroxy-3-methylbut 29.5 3.1E+02 0.0068 24.5 7.5 83 10-100 142-230 (611)
145 cd08068 MPN_BRCC36 Mov34/MPN/P 29.3 84 0.0018 24.6 3.7 39 34-73 57-101 (244)
146 PRK13307 bifunctional formalde 29.0 3.5E+02 0.0075 22.7 9.1 67 61-136 299-367 (391)
147 PRK10415 tRNA-dihydrouridine s 28.9 3.1E+02 0.0067 22.0 11.4 108 6-133 116-230 (321)
148 PRK08452 flagellar protein Fla 28.7 1.7E+02 0.0036 20.5 4.8 20 43-63 100-119 (124)
149 TIGR01502 B_methylAsp_ase meth 28.3 3.6E+02 0.0079 22.7 11.2 79 40-126 242-326 (408)
150 PF01212 Beta_elim_lyase: Beta 27.9 71 0.0015 25.4 3.2 24 4-30 140-163 (290)
151 PTZ00372 endonuclease 4-like p 27.7 3.1E+02 0.0068 23.2 7.0 86 6-94 173-264 (413)
152 PF11340 DUF3142: Protein of u 27.6 2.7E+02 0.0058 20.9 6.3 64 4-73 18-88 (181)
153 PF00682 HMGL-like: HMGL-like 27.5 2.6E+02 0.0057 20.8 7.1 107 8-132 107-218 (237)
154 TIGR03234 OH-pyruv-isom hydrox 27.5 2.7E+02 0.0058 20.9 6.9 49 11-64 125-174 (254)
155 PLN02591 tryptophan synthase 27.4 2.3E+02 0.0049 22.2 5.9 32 40-73 58-89 (250)
156 COG1242 Predicted Fe-S oxidore 27.3 1.3E+02 0.0027 24.5 4.4 73 30-108 116-191 (312)
157 TIGR03121 one_C_dehyd_A formyl 26.8 4.5E+02 0.0097 23.3 8.3 46 4-56 208-255 (556)
158 cd07941 DRE_TIM_LeuA3 Desulfob 26.6 3.1E+02 0.0068 21.4 7.2 14 43-56 148-161 (273)
159 PRK15052 D-tagatose-1,6-bispho 26.5 4.1E+02 0.0088 22.7 9.4 98 2-108 16-128 (421)
160 COG0836 {ManC} Mannose-1-phosp 26.4 3.7E+02 0.008 22.2 10.1 25 103-130 139-163 (333)
161 PRK00507 deoxyribose-phosphate 26.1 3E+02 0.0064 21.0 6.2 42 8-55 135-176 (221)
162 COG2108 Uncharacterized conser 25.7 1.7E+02 0.0036 24.3 4.9 48 80-128 91-142 (353)
163 KOG0256 1-aminocyclopropane-1- 25.7 3.7E+02 0.008 23.1 7.0 93 17-129 219-315 (471)
164 TIGR00238 KamA family protein. 25.6 1.9E+02 0.0041 23.4 5.3 13 44-56 266-278 (331)
165 PF04131 NanE: Putative N-acet 25.3 1.2E+02 0.0027 22.9 3.8 47 83-138 79-128 (192)
166 PRK13772 formimidoylglutamase; 25.2 3.6E+02 0.0078 21.6 8.7 38 34-73 258-295 (314)
167 PRK12581 oxaloacetate decarbox 25.1 3.4E+02 0.0074 23.4 6.9 27 43-71 189-215 (468)
168 PF00491 Arginase: Arginase fa 25.0 1.6E+02 0.0035 22.7 4.7 35 38-73 222-256 (277)
169 TIGR03581 EF_0839 conserved hy 25.0 3E+02 0.0064 21.5 5.9 42 3-56 158-199 (236)
170 TIGR01361 DAHP_synth_Bsub phos 24.8 1.2E+02 0.0027 23.7 4.0 13 43-55 245-257 (260)
171 PRK00694 4-hydroxy-3-methylbut 24.7 3.6E+02 0.0078 24.1 7.0 76 9-88 145-226 (606)
172 PF07443 HARP: HepA-related pr 23.8 91 0.002 18.7 2.4 25 42-67 31-55 (55)
173 PRK12330 oxaloacetate decarbox 23.7 3.5E+02 0.0076 23.5 6.8 13 44-56 182-194 (499)
174 PRK05409 hypothetical protein; 23.7 3.3E+02 0.0071 21.8 6.2 59 28-92 29-88 (281)
175 PRK13125 trpA tryptophan synth 23.6 3.4E+02 0.0073 20.7 11.0 104 6-132 113-219 (244)
176 cd02685 MIT_C MIT_C; domain fo 23.6 2.7E+02 0.006 20.1 5.2 53 44-99 34-86 (148)
177 COG0106 HisA Phosphoribosylfor 23.2 3.7E+02 0.0081 21.1 7.3 33 102-134 192-228 (241)
178 PTZ00124 adenosine deaminase; 23.1 4.1E+02 0.0088 21.9 6.9 48 82-133 205-259 (362)
179 COG5564 Predicted TIM-barrel e 22.9 2.4E+02 0.0053 22.2 5.1 67 3-73 161-229 (276)
180 cd08210 RLP_RrRLP Ribulose bis 22.8 2.6E+02 0.0055 23.2 5.6 86 42-132 137-230 (364)
181 PRK02308 uvsE putative UV dama 22.8 2.5E+02 0.0054 22.5 5.4 82 7-95 89-178 (303)
182 PRK05588 histidinol-phosphatas 22.6 3.5E+02 0.0076 20.6 8.9 76 9-99 166-242 (255)
183 PF00478 IMPDH: IMP dehydrogen 22.5 2.2E+02 0.0048 23.5 5.2 39 87-129 138-179 (352)
184 COG4992 ArgD Ornithine/acetylo 22.4 1.2E+02 0.0026 25.7 3.6 35 5-43 201-235 (404)
185 PF00255 GSHPx: Glutathione pe 22.4 2.6E+02 0.0056 18.9 5.2 38 27-69 22-61 (108)
186 CHL00200 trpA tryptophan synth 22.3 2.5E+02 0.0054 22.1 5.3 31 40-72 71-101 (263)
187 PF03646 FlaG: FlaG protein; 22.1 51 0.0011 21.9 1.2 16 43-59 84-99 (107)
188 cd02654 nuc_hydro_CjNH nuc_hyd 21.8 2.5E+02 0.0055 22.5 5.3 28 44-73 13-40 (318)
189 PRK06740 histidinol-phosphatas 21.7 4.4E+02 0.0095 21.3 8.0 76 9-99 239-316 (331)
190 PF01261 AP_endonuc_2: Xylose 21.2 3E+02 0.0066 19.3 6.4 47 10-62 113-159 (213)
191 PRK01242 rpl39e 50S ribosomal 21.1 1.6E+02 0.0035 17.4 3.0 22 13-36 11-32 (50)
192 PF11823 DUF3343: Protein of u 21.0 2.1E+02 0.0046 17.4 7.0 63 2-70 5-72 (73)
193 PRK08444 hypothetical protein; 21.0 4.7E+02 0.01 21.4 7.0 53 7-66 81-133 (353)
194 PRK09997 hydroxypyruvate isome 20.8 3.8E+02 0.0082 20.3 6.9 48 11-63 126-174 (258)
195 PF13718 GNAT_acetyltr_2: GNAT 20.8 2.1E+02 0.0045 21.6 4.3 28 102-129 151-179 (196)
196 cd01306 PhnM PhnM is believed 20.7 3.7E+02 0.0081 21.8 6.1 39 25-73 83-121 (325)
197 PF07745 Glyco_hydro_53: Glyco 20.7 4.8E+02 0.01 21.4 8.8 84 16-109 31-133 (332)
198 PRK08318 dihydropyrimidine deh 20.6 5E+02 0.011 21.5 10.9 34 102-135 254-290 (420)
199 COG2167 RPL39 Ribosomal protei 20.6 1.7E+02 0.0037 17.3 3.0 22 12-35 11-32 (51)
200 cd07948 DRE_TIM_HCS Saccharomy 20.6 4.2E+02 0.009 20.7 10.1 41 10-59 113-153 (262)
201 TIGR03820 lys_2_3_AblA lysine- 20.4 3.9E+02 0.0085 22.6 6.3 18 39-56 292-309 (417)
202 PF12554 MOZART1: Mitotic-spin 20.3 88 0.0019 18.2 1.7 16 40-55 32-47 (48)
203 PLN02615 arginase 20.2 4.8E+02 0.01 21.2 7.4 34 34-73 278-313 (338)
204 TIGR00737 nifR3_yhdG putative 20.2 4.5E+02 0.0097 20.9 11.6 108 7-134 115-229 (319)
205 PF12244 DUF3606: Protein of u 20.1 78 0.0017 18.9 1.6 17 39-55 28-44 (57)
206 KOG2964 Arginase family protei 20.0 3.2E+02 0.007 22.5 5.4 47 16-67 270-325 (361)
207 PLN02411 12-oxophytodienoate r 20.0 5.1E+02 0.011 21.5 8.5 47 88-138 304-353 (391)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=6.2e-36 Score=227.23 Aligned_cols=131 Identities=44% Similarity=0.595 Sum_probs=121.3
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~ 78 (142)
|+||||+++.|++|++.+.+.+ ++++|+||||++.+.+|.|++|+++.+++..+. .+|+|+++||||+++.+.++ .
T Consensus 96 ~ihSlDr~klA~~l~kra~~~~-~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~l~GLM~ipp~~~d~~~~ 173 (228)
T COG0325 96 WIHSLDRLKLAKELNKRALELP-KPLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLELRGLMTIPPLTDDPEEI 173 (228)
T ss_pred eeeecCHHHHHHHHHHHHHhCC-CCceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCeEeEEEeeCCCCCCHHHH
Confidence 7999999999999999888876 799999999999999999999999999999999 99999999999999984333 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
..+|+.+..+++.+++. +.+ +.+||||||+||++|+++|+|+||+||.|||.|+|
T Consensus 174 ~~~F~~l~~l~~~l~~~-~~~--~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 174 FAVFRKLRKLFDELKAK-YPP--IDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred HHHHHHHHHHHHHHHHh-cCC--CCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence 58999999999999988 433 89999999999999999999999999999999987
No 2
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=4.5e-34 Score=219.52 Aligned_cols=130 Identities=60% Similarity=0.989 Sum_probs=117.6
Q ss_pred CeEecCCHHHHHHHHHHHHhc--CCCCceEEEEEeCCCCCCccCCChhhHHHHHHHH-HccCCCeeEeeEeeecCCCCC-
Q 032392 1 MVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV-RLRCPNLEFSGLMTIGMPDYT- 76 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~--~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i-~~~~~~l~l~Gl~th~~~~~~- 76 (142)
|||||||++.|++|++.+.+. + ++++|+|+||+|.+.+|+|++|+++.++++.+ . ++|||+++|||||++++++
T Consensus 92 ~ihsvDs~~la~~L~~~a~~~~~~-~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~l~GLMt~~~~~~~~ 169 (227)
T cd06822 92 MVETVDSEKLADKLNKAWEKLGER-EPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLKFSGLMTIGSFGYSL 169 (227)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCceEEEEEeeCCCCCCc
Confidence 699999999999999999988 8 89999999999988899999999999999999 6 8999999999999998444
Q ss_pred --CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccC
Q 032392 77 --STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 77 --~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg 132 (142)
.....|+.+.++++.|++.+|+..++++||||||+||+.|+++|+|||||||+|||
T Consensus 170 ~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 170 SSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHhHHHHHHcCCCEEeCCchhcC
Confidence 24579999999999998864543225799999999999999999999999999997
No 3
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=203.67 Aligned_cols=139 Identities=60% Similarity=0.884 Sum_probs=125.7
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCC--CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC-
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRK--PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~--~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~- 77 (142)
+++|||+.+.|+.+++...+.| . |++|+|||||+++.+|.|+.|.++.++++.++.+|+||++.||||+++.++..
T Consensus 100 ~vetVDseK~A~~ld~a~~k~g-~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~s 178 (244)
T KOG3157|consen 100 SVETVDSEKKARKLDSAWSKLG-PDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHS 178 (244)
T ss_pred EEEecchHHHHHHHHHHHHhcC-CCCCeEEEEEeecCCccccCCCChhhhHHHHHHHHHhCCcceeeeeEEecccccccc
Confidence 4789999999999999999998 5 99999999999999999999999999999997469999999999999985542
Q ss_pred --cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccccc
Q 032392 78 --TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 140 (142)
Q Consensus 78 --~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~~~ 140 (142)
...-|+.+..+.+.+.+++|+......||||||+||..|++.|+|.||+|+.|||.|+|.++.
T Consensus 179 s~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~AIe~Gst~VRvGStIFG~R~y~kk~ 243 (244)
T KOG3157|consen 179 SGENPDFQVLVKLRESICKKLGIPADQVELSMGMSADFLLAIEQGSTNVRVGSTIFGAREYKKKA 243 (244)
T ss_pred CCCCccHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHHHHhCCceEEeccccccCCCCCCCC
Confidence 234599999999999988898654578899999999999999999999999999999999864
No 4
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.98 E-value=1.7e-31 Score=205.41 Aligned_cols=131 Identities=42% Similarity=0.593 Sum_probs=116.5
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCC--CCc
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--TST 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~--~~~ 78 (142)
++++|||.+.++.|++.+.+.+ ++++|||+||||.+|+|.|+.++++.++++.+. .+|+|++.|||||+++.. +..
T Consensus 97 l~~~vds~~~~~~l~~~a~~~~-~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~~l~l~Gl~th~~~~~~~~~~ 174 (229)
T TIGR00044 97 WVHTIDSLKIAKKLNEQREKLQ-PPLNVLLQINISDEESKSGIQPEELLELAIQIE-ELKHLKLRGLMTIGAPTDSHEDQ 174 (229)
T ss_pred EEEEECCHHHHHHHHHHHHhcC-CCceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCHHHH
Confidence 3689999999999999998887 899999999998779999999988999999999 999999999999999833 223
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCC
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~ 134 (142)
.+.|+.+..+++.|++. +...++..+|||||+||+.|++.|+|+||||++|||||
T Consensus 175 ~~~~~~~~~~~~~l~~~-~~~~~~~~lS~G~t~~~~~a~~~g~tevR~G~~if~dr 229 (229)
T TIGR00044 175 EENFRFMKLLFWQIKQD-SPFGTIDTLSMGMSDDFEEAIAAGATMVRIGTAIFGAR 229 (229)
T ss_pred HHHHHHHHHHHHHHHhh-cCCCCCCEEeeeCcHhHHHHHHCCCCEEECChHHcCCC
Confidence 47889999999999887 53113789999999999999999999999999999986
No 5
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.97 E-value=2.2e-29 Score=192.92 Aligned_cols=128 Identities=41% Similarity=0.565 Sum_probs=110.4
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~ 78 (142)
++++|||.+.++.|++.+.+.+ ++++|||+||+|++|+|+|++++++.++++.+. .+++|+++|||||+++..+. .
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g-~~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~-~~~~l~l~Gl~tH~a~~~~~~~q 172 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGL-PPLNVCIQVNISGEDSKSGVAPEDAAELAEAIS-QLPNLRLRGLMAIPAPTDDEAAQ 172 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcC-CCCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHh-cCCCCcEEEEEEeCCCCCChHHH
Confidence 3689999999999999998877 889999999998889999999988999999999 99999999999999983322 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCC
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~ 133 (142)
.+.|+.+.++.+.+++. ++. +..+|+|||+++..+++.++||||||++|||+
T Consensus 173 ~~~f~~~~~~~~~l~~~-~~~--~~~is~gnS~~~~~~~~~~~~~vRpG~~lyG~ 224 (224)
T cd06824 173 RAAFKRLRQLFDQLKKQ-YPD--LDTLSMGMSGDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred HHHHHHHHHHHHHHHhh-CCC--CCEEeCcCcHhHHHHHHcCCCEEEcChHhcCC
Confidence 24555555556778765 665 57899999999999999999999999999995
No 6
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.96 E-value=3.4e-29 Score=189.74 Aligned_cols=128 Identities=32% Similarity=0.426 Sum_probs=113.9
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCC-C-c
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-S-T 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~-~-~ 78 (142)
++++|||.+.++.|++.+.+.+ ++++|||+|||| |+|.|+.++++.++++.+. .+|+|++.|||||+++.++ + .
T Consensus 87 ~~~~v~s~~~~~~l~~~~~~~~-~~~~v~l~vdtG--~~R~G~~~~~~~~l~~~i~-~~~~l~l~Gl~th~~~~d~~~~~ 162 (218)
T PF01168_consen 87 IIPTVDSLEQLEALSKAAKKQG-KPLKVHLKVDTG--MGRLGVRPEELEELAEAIK-ALPNLRLEGLMTHFAHADDPDYT 162 (218)
T ss_dssp EEEEE-SHHHHHHHHHHHHHHT-STEEEEEEBESS--SSSSSBECHHHHHHHHHHH-HTTTEEEEEEEEBGSSTTSSCHH
T ss_pred EEEEEchhhHHHHHHHHHHHcC-CceEEEEeeccc--ccccCCCHHHHHHHHHHHh-cCCCceEeeEeccccccCCHHHH
Confidence 3689999999999999999887 899999999999 8999999999999999999 9999999999999998332 2 3
Q ss_pred H-HHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHH-HcCCcEEecCccccCCCc
Q 032392 79 P-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 79 ~-~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~-~~g~t~VR~G~~ifg~~~ 135 (142)
. +|+++|.++++.+++. |++ ++.+|+|+|+++..++ ..+.|+||||++|||++|
T Consensus 163 ~~~q~~~~~~~~~~l~~~-~~~--~~~~s~g~S~~~~~~~~~~~~~~vR~G~~lyG~~P 218 (218)
T PF01168_consen 163 NQEQFERFRELAEALEKA-GIP--PPIVSMGNSAAFLLAPAHEGITMVRPGIALYGYRP 218 (218)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTT--CSEEEEEBHHHHHHHGGTTTTSEEEESGGGGT-HS
T ss_pred HHHHHHHHHHHHHHHHhc-cCC--CceecCCCCcchhhcccccCCcEEEechhhhCCCC
Confidence 3 4999999999999887 665 6899999999999998 778999999999999986
No 7
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.96 E-value=1.1e-28 Score=188.65 Aligned_cols=127 Identities=46% Similarity=0.646 Sum_probs=115.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCC--CCCcH
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPD--YTSTP 79 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~--~~~~~ 79 (142)
+++|+|++.++.|++.+.+.+ ++++|+|+||||+.|+|+|++++++.++++.+. .+++|++.|+|||+++. .+...
T Consensus 94 ~~~v~s~~~l~~l~~~a~~~~-~~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~-~~~~l~~~Gi~sh~s~~~~~~~~~ 171 (222)
T cd00635 94 IHSVDSLKLAEELNKRAEKEG-RVLDVLVQVNIGGEESKSGVAPEELEELLEEIA-ALPNLRIRGLMTIAPLTEDPEEVR 171 (222)
T ss_pred EEEcCCHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHH-cCCCCcEEEEEEECCCCCChHHHH
Confidence 679999999999999998887 899999999999667999999999999999999 99999999999999983 23356
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccC
Q 032392 80 ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg 132 (142)
++++.+.++.+.+++.+|+. ++++|+|||++++.+...|+|++|||+++||
T Consensus 172 ~~~~~~~~~~~~l~~~~g~~--~~~is~G~t~~~~~~~~~~~~~~r~G~~if~ 222 (222)
T cd00635 172 PYFRELRELRDELGAKGGVN--LKELSMGMSGDFEIAIEEGATLVRIGTAIFG 222 (222)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCEEECcccHhHHHHHHcCCCEEEeChhhcC
Confidence 88999999999999885576 7899999999999999999999999999997
No 8
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.93 E-value=2.8e-25 Score=180.08 Aligned_cols=128 Identities=22% Similarity=0.308 Sum_probs=113.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh-hHHHHHHHHHccCCCeeEeeEeeecCCCC--C--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVRLRCPNLEFSGLMTIGMPDY--T-- 76 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~-~~~~l~~~i~~~~~~l~l~Gl~th~~~~~--~-- 76 (142)
+.+|||.+.++.|++.+.+.+ ++++|+|+||+| |+|+|+.++ ++.++++.+. ++++|++.|||+|.++.+ +
T Consensus 106 ~~~Vds~~~l~~l~~~a~~~~-~~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gl~~~~gh~~~~~~~ 181 (361)
T cd06821 106 SALVDDLEAAEALSAAAGSAG-LTLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA-TLPGLVLAGLHAYDGHHRNTDLA 181 (361)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CeEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-hCCCceEeeEEeecCcccCCCHH
Confidence 578999999999999998887 899999999999 899999886 7999999999 999999999999888722 1
Q ss_pred ----CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032392 77 ----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 77 ----~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
...+++++|.++++.+++. |+. +..+|+|+|+++..+.+.+.||||||+++|||.+|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~v~~GgS~~~~~~~~~~~~~vr~G~~l~gd~~~ 242 (361)
T cd06821 182 EREAAADAAYKPVLALREALEAA-GLP--VPELVAGGTPSFPFHAAYTDVECSPGTFVLWDAGY 242 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCC--CCEEEECCCcchhhhccCCCcEECCceEEEecHHH
Confidence 1247889999999999886 765 68899999999998888889999999999999987
No 9
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.92 E-value=2.3e-24 Score=175.39 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=115.4
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCee-EeeEeeecCC-CC-C-
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMP-DY-T- 76 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~-l~Gl~th~~~-~~-~- 76 (142)
++++|||+++++.|++.+.+.+ ++++|||+|||| |+|+|++++++.++++.+. ++++|+ +.|||||+++ +. +
T Consensus 96 l~~~v~s~~~l~~l~~~a~~~~-~~~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i~-~~~~l~~l~Gi~tH~~~~~~~~~ 171 (367)
T TIGR00492 96 LTTTVHSVEQLQALEEALLKEP-KRLKVHLKIDTG--MNRLGVKPDEAALFVQKLR-QLKKFLELEGIFSHFATADEPKT 171 (367)
T ss_pred CEEEECCHHHHHHHHHHHHHcC-CceEEEEEeeCC--CCCCCCChHHHHHHHHHHH-hCCCCCCceEEEcCCCCCCCCCC
Confidence 3689999999999999998887 889999999999 8999999998999999898 899999 9999999997 32 2
Q ss_pred -CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 77 -STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 77 -~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
...+|+++|.++++.+++. |++ ++.+|+|+|+++..+++.++||||||+.+||..+..
T Consensus 172 ~~~~~q~~~f~~~~~~l~~~-g~~--~~~~~~~nS~~~~~~~~~~~d~vR~G~~lyG~~~~~ 230 (367)
T TIGR00492 172 GTTQKQIERFNSFLEGLKQQ-NIE--PPFRHIANSAAILNWPESHFDMVRPGIILYGLYPSA 230 (367)
T ss_pred hHHHHHHHHHHHHHHHHhhc-CCC--CCcEEccCCHHHhCCccccCCeEccCeEEECCCcCc
Confidence 2458999999999999876 765 678999999999888888999999999999998754
No 10
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.91 E-value=1.9e-23 Score=169.50 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=107.0
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCC--CcH
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STP 79 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~--~~~ 79 (142)
+.+|+|.+.++.+++.+.+.+ ++++|||+|||| |+|+|+.++++.++++.+. ++++|+++|||||+++.+. ...
T Consensus 94 ~~~i~s~~~~~~l~~~a~~~~-~~~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~tH~~~~~~~~~~~ 169 (353)
T cd06815 94 ISLNSELETIKALSEEAKKQG-KIHKIILMVDLG--DLREGVLPEDLLDFVEEIL-KLPGIELVGIGTNLGCYGGVLPTE 169 (353)
T ss_pred eeccChHHHHHHHHHHHHHcC-CccceEEEEecC--CCccccCHHHHHHHHHHHh-CCCCcEEEecccCccccCCCCCCH
Confidence 356889999999999998887 889999999999 8999999988999999999 9999999999999997222 334
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHc----CCcEEecCcccc-CCCcc
Q 032392 80 ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEM----GSTSVRIGSTIF-GPREY 136 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~----g~t~VR~G~~if-g~~~~ 136 (142)
.+++.+..+.+.+++..|+. ++++|+|||+++..+++. ++||||||++|| |..|.
T Consensus 170 ~~~~~~~~~~~~l~~~~g~~--~~~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~yG~~p~ 229 (353)
T cd06815 170 ENMGKLVELKEEIEKEFGIK--LPIISGGNSASLPLLLKGELPGGINQLRIGEAILLGRETT 229 (353)
T ss_pred HHHHHHHHHHHHHHHhhCCC--CCEEeccchHHHHHHHhcCCcCCCceeEeehhhhcccccc
Confidence 66777777777777622654 568999999999887543 789999999995 76664
No 11
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.91 E-value=1e-23 Score=170.50 Aligned_cols=129 Identities=23% Similarity=0.412 Sum_probs=114.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCCCCCC---
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--- 77 (142)
+.+|||++.++.|++.+.+.+ ++++|+|+||+| ++|+|+.+ +++.++++.+. ++|+|++.|||+|+++.+..
T Consensus 99 ~~~vds~~~l~~L~~~a~~~~-~~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gi~~h~g~~~~~~~~ 174 (353)
T cd06820 99 SVGVDSAEVARGLAEVAEGAG-RPLEVLVEVDSG--MNRCGVQTPEDAVALARAIA-SAPGLRFRGIFTYPGHSYAPGAL 174 (353)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CeeEEEEEECCC--CCcCCCCChHHHHHHHHHHH-hCCCcEEEEEEecCCccCChHHH
Confidence 578999999999999999888 899999999999 89999988 89999999999 99999999999999983322
Q ss_pred ---cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHH-HcCCcEEecCccccCCCccc
Q 032392 78 ---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~-~~g~t~VR~G~~ifg~~~~~ 137 (142)
..++++++.++++.+++. |+. +..+|+|+|+++..+. ..+.|+||||+++|+|+.|.
T Consensus 175 ~~~~~~~~~~~~~~~~~l~~~-g~~--~~~vs~Ggs~t~~~~~~~~~~~elR~G~~i~~d~~~~ 235 (353)
T cd06820 175 EEAAADEAEALLAAAGILEEA-GLE--PPVVSGGSTPTLWRSHEVPGITEIRPGTYIFNDASQV 235 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCcChhhhhhhccCCceEEccccEEeecHHHH
Confidence 347888899999999885 775 7899999999998875 57899999999999998774
No 12
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.90 E-value=3e-23 Score=168.57 Aligned_cols=129 Identities=25% Similarity=0.317 Sum_probs=115.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCC---C
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT---S 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~---~ 77 (142)
+++|||+++++.|++.+.+.+ ++++|+|+|||| |+|+|++++++.++++.+. ++++|++.|||+|+++ +.. .
T Consensus 96 ~~~vds~~~l~~l~~~a~~~~-~~~~v~l~vdtG--~~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~~H~~~~~~~~~~~ 171 (367)
T cd00430 96 TPTVSSLEQAEALSAAAARLG-KTLKVHLKIDTG--MGRLGFRPEEAEELLEALK-ALPGLELEGVFTHFATADEPDKAY 171 (367)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEEcCC--CCCCCCCHHHHHHHHHHHH-hCCCceEEEEEEECCCCCCCCcHH
Confidence 678999999999999998877 789999999999 8999999999999999999 9999999999999997 322 2
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 78 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.|++. |+. ++.+|+|+|+++...++.+.|+||||++|||+.++.
T Consensus 172 ~~~q~~~~~~~~~~l~~~-g~~--~~~v~~g~s~~~~~~~~~~~d~vR~G~~lyG~~~~~ 228 (367)
T cd00430 172 TRRQLERFLEALAELEEA-GIP--PPLKHLANSAAILRFPEAHFDMVRPGIALYGLYPSP 228 (367)
T ss_pred HHHHHHHHHHHHHHHHhc-CCC--CCcEEccCCHHHhCCccccCCeEeeCeEEECcCCCc
Confidence 358999999999999875 765 678999999998887788999999999999998864
No 13
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.90 E-value=2.4e-23 Score=167.92 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=104.2
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHH--HHHccCCCeeEeeEeeecCCCCCC--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE--HVRLRCPNLEFSGLMTIGMPDYTS-- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~--~i~~~~~~l~l~Gl~th~~~~~~~-- 77 (142)
+.+|||.+.++.|++.+.+.+ ++++|+|+||+| |+|+|+++++...+.. .+. ++++|++.|||||+++.++.
T Consensus 89 ~~~Vds~~~l~~l~~~a~~~~-~~~~V~l~ID~G--~~R~Gv~~~~~~~l~~~~~i~-~~~~l~l~Gl~~h~g~~~~~~~ 164 (345)
T cd07376 89 HVLVDSPEALAALAAFAAAHG-VRLRVMLEVDVG--GHRSGVRPEEAAALALADAVQ-ASPGLRLAGVMAYEGHIYGAGG 164 (345)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CeeEEEEEeCCC--CCcCCCCCcHHHHHHHHHHhc-cCCCeEEeEEEeecchhccCCC
Confidence 467999999999999998887 899999999999 8999998754433333 345 68999999999999973221
Q ss_pred -------cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHH-HcCCcEEecCccccCCCccc
Q 032392 78 -------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -------~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~-~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+++++|.++.+.++ . |+. ++.+|+|+|+++..+. +.+.||||||+++||+++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~-~-g~~--~~~vs~G~S~~~~~~~~~~~~~~vR~G~~lyg~~~~~ 228 (345)
T cd07376 165 AREGAQARDQAVAAVRAAAAAAE-R-GLA--CPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTGFD 228 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-c-CCC--CCEEEeCCCcChhhcccCCCCEEEcCceEEecchHHh
Confidence 2367777777777765 3 765 6789999999999885 67999999999999999884
No 14
>PRK00053 alr alanine racemase; Reviewed
Probab=99.89 E-value=8.2e-23 Score=166.15 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=109.5
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCC--CC-
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--TS- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~--~~- 77 (142)
++++|||.++++.|++. +.+ ++++|+|+|||| |+|+|++++++.++++.+. .+++|++.|||||+++.. +.
T Consensus 98 i~~~v~s~~~l~~l~~~--~~~-~~~~V~l~vdtG--~~R~Gi~~~e~~~~~~~i~-~~~~l~l~Gi~tH~~~~~~~~~~ 171 (363)
T PRK00053 98 LTTAVHSLEQLEALEKA--ELG-KPLKVHLKIDTG--MHRLGVRPEEAEAALERLL-ACPNVRLEGIFSHFATADEPDNS 171 (363)
T ss_pred CEEEECCHHHHHHHHHh--ccC-CCeEEEEEecCC--CCcCCCCHHHHHHHHHHHH-hCCCCceEEEEecCCCCCCCCCh
Confidence 36899999999999996 556 789999999999 8999999999999999999 999999999999999722 22
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.+++. |+ +.+|+|+|+.+..+++.+.|+||||+++||+.|+.
T Consensus 172 ~~~~q~~~f~~~~~~l~~~-g~----~~~h~~nS~~~~~~~~~~~d~vRpG~~lyG~~p~~ 227 (363)
T PRK00053 172 YTEQQLNRFEAALAGLPGK-GK----PLRHLANSAAILRWPDLHFDWVRPGIALYGLSPSG 227 (363)
T ss_pred HHHHHHHHHHHHHHHHhhc-CC----ceEeccCCHHHhCCCcccCceEccCeeeeCCCCCc
Confidence 358999999999988764 54 46899999998877788899999999999998864
No 15
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.89 E-value=3.8e-23 Score=169.43 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=106.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh-hHHHHHHHHHccCCCeeEeeEeeecCC---CCCC
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTS 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~-~~~~l~~~i~~~~~~l~l~Gl~th~~~---~~~~ 77 (142)
..+|||.++++.|++.+.+.+ ++++|||+|||| |+|+|+.++ ++.++++.+. ++++|++.|||+|.+| ....
T Consensus 111 ~~~Vds~e~l~~l~~~a~~~g-~~l~V~lkVDtG--m~R~Gv~~~~~~~~l~~~i~-~~~~l~~~Gi~ty~gh~~~~~~~ 186 (379)
T cd06814 111 QWLIDTPERLAQYRALARSLG-LTLRINLELDVG--LHRGGFADPQTLPKALTAID-APPRLRFSGLMGYEPHVAKLPGL 186 (379)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEeCCC--CCCCCCCCHHHHHHHHHHHH-hCCCceEEEEEEEccccccCCCc
Confidence 468999999999999998887 899999999999 999999875 6899999999 9999999999999998 1111
Q ss_pred -----c----HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHH-cCCcEEecCccccCCCcc
Q 032392 78 -----T----PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 78 -----~----~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~-~g~t~VR~G~~ifg~~~~ 136 (142)
. .+.++.+..+.+.+++. |+. ++.+|.|+||++..+.. .+.||||||+|+|+|+.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~--~~~vs~GgTpT~~~~~~~~~~tE~~pGsy~f~D~~~ 252 (379)
T cd06814 187 ISPAKARAAAMARYQAFVALARAHLGA-HTQ--KLTLNTGGSPTYRLYEGDGPVNEVSAGSALVKPTDF 252 (379)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcc-CCC--ccEEecCCCcceEEEcCCCcceEeccccEEEccccc
Confidence 1 13455566666666554 776 88999999999887654 668999999999999999
No 16
>PRK13340 alanine racemase; Reviewed
Probab=99.89 E-value=1.5e-22 Score=167.01 Aligned_cols=127 Identities=21% Similarity=0.324 Sum_probs=102.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCccCCChhhHHH--HHHHHHccCCCeeEeeEeeecCC-CCCC
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCLG--IVEHVRLRCPNLEFSGLMTIGMP-DYTS 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-g~~~~R~G~~~~~~~~--l~~~i~~~~~~l~l~Gl~th~~~-~~~~ 77 (142)
+.+|+|.++++.|++.+.+.+ ++++|||+||| | |+|+|+.+++..+ .+..+. ++++|++.|||||+++ |...
T Consensus 135 ~~~v~s~~~l~~l~~~a~~~~-~~~~V~LkVDt~G--m~R~G~~~~e~~~~~~~~~l~-~~~~l~l~Gi~tH~a~ad~~~ 210 (406)
T PRK13340 135 EELIGDDEQAKLLAAIAKKNG-KPIDIHLALNSGG--MSRNGLDMSTARGKWEALRIA-TLPSLGIVGIMTHFPNEDEDE 210 (406)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEECCCC--CCCcCCChhhhhHHHHHHHHH-hCCCccEEEEEEECCCCCcHH
Confidence 578999999999999998877 88999999999 7 9999998865433 333677 8899999999999998 4444
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHH--HHcCCcEEecCccccCCC
Q 032392 78 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA--IEMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a--~~~g~t~VR~G~~ifg~~ 134 (142)
..+|+++|.++++.+.+..|+. ++.+++|+++++.+. ++.++|+||||++|||++
T Consensus 211 ~~~q~~~f~~~~~~l~~~~g~~--~~~~~~h~anSa~~~~~~~~~~d~vR~G~~lyG~~ 267 (406)
T PRK13340 211 VRWKLAQFKEQTAWLIGEAGLK--REKITLHVANSYATLNVPEAHLDMVRPGGILYGDR 267 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--CCcCeEEecCCHHHHcCchhcCCeEeeCeeeeCCC
Confidence 4589999999888876544654 455566677776653 678999999999999994
No 17
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.89 E-value=2.3e-22 Score=163.94 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=108.2
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCccCCChhh--HHHHHHHHHccCCCeeEeeEeeecCC-CCCC
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSS--CLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-g~~~~R~G~~~~~--~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~ 77 (142)
.++|+|+++++.|++.+.+.+ ++++|||+||| | |+|+|+.+++ +.++++.+. ++++|++.|+|||+++ |..+
T Consensus 96 ~~~v~s~~~l~~l~~~a~~~~-~~~~v~LkvDt~G--m~R~Gi~~~~~~~~~~~~~~~-~~~~l~l~Gi~tH~a~ad~~~ 171 (365)
T cd06826 96 EELIGSLDQAEQIDSLAKRHG-KTLPVHLALNSGG--MSRNGLELSTAQGKEDAVAIA-TLPNLKIVGIMTHFPVEDEDD 171 (365)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEECCCC--CCCCCCCcchhhHHHHHHHHH-HCCCCcEEEEEEeCCCCCchH
Confidence 578999999999999998887 89999999999 8 9999998743 567778888 8999999999999998 4433
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032392 78 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
...|+++|.++.+.+.+..|+..+...+|+++|......++.+.|+||||+++||+.|+
T Consensus 172 ~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~lyG~~p~ 230 (365)
T cd06826 172 VRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGILYGDTPP 230 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCccccCCcCccCeeeeCCCCC
Confidence 46899999998887733346543234678888888766677889999999999999875
No 18
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.89 E-value=2.7e-22 Score=164.85 Aligned_cols=129 Identities=18% Similarity=0.272 Sum_probs=108.1
Q ss_pred eEecCCHHHHHHHHHH-HHhcCCCCceEEEEEeCCCCCCccCCCh--hhHHHHHHHHHcc-CCCeeEeeEeeecCCCCCC
Q 032392 2 VEGVGNEKIANHLDKA-VSNLGRKPLKVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLR-CPNLEFSGLMTIGMPDYTS 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~-a~~~~~~~~~v~I~v~tg~~~~R~G~~~--~~~~~l~~~i~~~-~~~l~l~Gl~th~~~~~~~ 77 (142)
..+|||.+.++.|++. +.+.+ ++++|||+|||| |+|+|+.+ +++.++++.+. . +++|++.|+|||+++.+..
T Consensus 108 ~~~Vds~~~l~~l~~~~a~~~g-~~~~V~lkvDtG--m~R~Gv~~~~~~~~~l~~~i~-~~~~~L~l~Gi~tH~g~~~~~ 183 (389)
T cd06817 108 RVMVDNPEQLDFLEQFQPLKSG-KKWSVFIKVDCG--THRAGVPPESEDAKELIQKLE-KASEAVELFGFYSHAGHSYSS 183 (389)
T ss_pred EEEECCHHHHHHHHHHHhhccC-CceEEEEEEcCC--CCcCCCCCChHHHHHHHHHHH-hhCCCcEEEEEEEeCCcccCC
Confidence 5789999999999998 87777 899999999999 99999976 35889999998 8 9999999999999984432
Q ss_pred c---------HHHHHHHHHHHHHHHH-HhCCCCCCCeEEecCchhHHHHH---------HcCCcEEecCccccCCCccc
Q 032392 78 T---------PENFRTLLNCRAEVCK-ALGMAEDQCELSMGMSGDFEQAI---------EMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ~---------~~~~~~~~~~~~~l~~-~~g~~~~~~~lS~G~s~~~~~a~---------~~g~t~VR~G~~ifg~~~~~ 137 (142)
. .+.++.+..+.+.|++ . |++ ++.+|.|+||++..+. ..+.|++|||+|+|+|..|.
T Consensus 184 ~~~~e~~~~~~~~~~~~~~~~~~l~~~~-g~~--~~~vs~GgTpt~~~~~~~~~~~~~~~~~~tel~pG~Yvf~D~~~~ 259 (389)
T cd06817 184 RSAEDAKEVLREEIEAVLTAAKKLKSIQ-GDR--KLTLSVGATPTAHAAEALVLIPAPSLSGLLELHAGNYPFYDLQQV 259 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCCCcchhhhccccccccccCCcceEEccCccccccHHHH
Confidence 1 1456777778888776 5 876 7899999999988743 24679999999999999884
No 19
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.87 E-value=1.3e-21 Score=159.71 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=104.9
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC-CC-
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY-TS- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~-~~- 77 (142)
.+++|+|.++++.|++.+ ++++|||+|||| |+|+|+.++++ +++..+. ++++|++.|+|||+++ |. .+
T Consensus 95 l~~~i~~~~~l~~l~~~~-----~~~~vhlkvDtG--m~R~G~~~~~~-~~~~~~~-~~~~l~~~Gi~tH~a~ad~~~~~ 165 (368)
T cd06825 95 LTQTLISEAYAEELSKYA-----VNIKVHLKVDTG--MHRLGESPEDI-DSILAIY-RLKNLKVSGIFSHLCVSDSLDED 165 (368)
T ss_pred CEEEECCHHHHHHHHhcC-----CCceEEEEeeCC--CCCCCCCHHHH-HHHHHHH-hCCCCcEEEEECCCCCCCCCCCc
Confidence 367899999999998865 468999999999 99999998554 6777787 8999999999999997 32 21
Q ss_pred ----cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 78 ----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.+++. |+. ++.+|+|+|+.....++.+.|+||||+++||..|..
T Consensus 166 ~~~~~~~Q~~~f~~~~~~l~~~-g~~--~~~~h~~nSa~~l~~~~~~~d~vR~G~~lYG~~p~~ 226 (368)
T cd06825 166 DIAFTKHQIACFDQVLADLKAR-GIE--VGKIHIQSSYGILNYPDLKYDYVRPGILLYGVLSDP 226 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhc-CCC--CCcEEeeCCHHHhCCccccCCeEccCeEEECCCCCC
Confidence 347899999999999876 775 567899999887777777899999999999987643
No 20
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.87 E-value=3.1e-21 Score=158.24 Aligned_cols=129 Identities=21% Similarity=0.258 Sum_probs=108.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcc------CCChhhHHHHHHHHHccCCCeeEeeEeeecCC--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKS------GIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-- 73 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~------G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-- 73 (142)
+.+|+|++.+++|++++.+.| ++++|+|+||+| |+|+ |++++++.++++.+. ++++|++.||++|+++
T Consensus 123 ~i~V~s~~~l~~L~~~A~~~g-~~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~~~~i~-~l~~l~l~Githf~~~~~ 198 (382)
T cd06811 123 VITVYSLEKAREISDAAVELG-RVQDVLLRVYGD--EDTLYPGQEGGFPLEELPAVLAAIK-ALPGIRIAGLTSFPCFLY 198 (382)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEEECC--CCccccCccceecHHHHHHHHHHHH-cCCCcEEEeEcccchhhc
Confidence 579999999999999998888 899999999998 7776 999999999999999 9999999999555544
Q ss_pred CCCC----cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhH---HHHHHcCCcEEecCccccCCCccc
Q 032392 74 DYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF---EQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 74 ~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~---~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
|... ...+++.|.++.+.+++. |+. +.++|+|++++. +.+.+.|.||||||++|||+.|+.
T Consensus 199 d~~~~~~~~~~~~~~l~~~~~~l~~~-g~~--~~~is~Gga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~~ 266 (382)
T cd06811 199 DEEQGDIAPTPNLFTLLKAKELLEKR-GIE--ILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGTTPLH 266 (382)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHC-CCC--CeEEccCCCcchhhHHHHHhCCCcEEeccEEEecCcchh
Confidence 3332 245788899999988876 765 788998765543 567789999999999999999884
No 21
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.86 E-value=4.6e-21 Score=155.24 Aligned_cols=128 Identities=22% Similarity=0.308 Sum_probs=110.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHccCCCeeEeeEeeecCCCC--C--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--T-- 76 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~-~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~--~-- 76 (142)
..+|||++.++.|++.+.+.+ ++++|+|+||+| |+|+|+. ++++.++++.+. ++++|++.|||+|.++.. .
T Consensus 103 ~~~vDs~~~l~~l~~~a~~~~-~~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~~~~l~l~Gi~~y~G~~~h~~~~ 178 (358)
T cd06819 103 IVCVDHPDNVRALAAAAVEAG-VRLDVLVEIDVG--QGRCGVPPGEAALALARTIA-ALPGLRFAGLQAYHGHLQHIRDY 178 (358)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CceEEEEEECCC--CCcCCCCChHHHHHHHHHHH-hCCCceEeEEEeeCchhccCCCH
Confidence 468999999999999998887 899999999999 8999998 578999999999 999999999999887611 1
Q ss_pred -C----cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHH-cCCcEEecCccccCCCcc
Q 032392 77 -S----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 77 -~----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~-~g~t~VR~G~~ifg~~~~ 136 (142)
. ..++++++.++++.+++. |+. +..+|+|+|+++..+.. .+.|++|+|+++|+++.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~vsgGgs~~~~~~~~~~~~~elr~G~~i~~d~~~ 241 (358)
T cd06819 179 EERRAAIAEAAEALQATRDALEAA-GLP--CEIVTGGGTGTYEFEAASGVYTELQAGSYVFMDADY 241 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCC--CCEEecCCCcChhhhccCCcceEEccCceEEecHHH
Confidence 1 246888888999988875 876 78899999999887765 458999999999999876
No 22
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.86 E-value=6.1e-21 Score=155.23 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=102.3
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCC--Cc
Q 032392 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--ST 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~--~~ 78 (142)
++++|+|.++++.|++.+ .+ ++++|||+|||| |+|.|+.++++.++++.+. .+++|++.|+|||+++.++ ..
T Consensus 95 l~~~i~s~~~l~~l~~~~--~~-~~~~vhLkvDTG--M~R~G~~~~e~~~~~~~i~-~~~~l~~~Gi~sH~a~ad~~~~~ 168 (355)
T PRK03646 95 LTTCVHSNWQLKALQNAR--LK-APLDIYLKVNSG--MNRLGFQPERVQTVWQQLR-AMGNVGEMTLMSHFARADHPDGI 168 (355)
T ss_pred CEEEECCHHHHHHHHHhc--cC-CCeEEEEEeeCC--CCCCCCCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCCCCCCHH
Confidence 368999999999999876 35 789999999999 9999999999999999998 9999999999999998322 24
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
.+|+++|.++.+ ++. ..+|+++|+.....++.+.++||||+.+||..|+.
T Consensus 169 ~~Q~~~F~~~~~------~~~---~~~h~~nSa~~~~~~~~~~d~vR~Gi~lYG~~p~~ 218 (355)
T PRK03646 169 SEAMARIEQAAE------GLE---CERSLSNSAATLWHPQAHFDWVRPGIILYGASPSG 218 (355)
T ss_pred HHHHHHHHHHHh------ccC---CCeeeeCCHHHHCCccccCCeeccceeeeCCCCCc
Confidence 578888877652 333 24788999998777888899999999999998754
No 23
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.85 E-value=1.1e-20 Score=141.73 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=106.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCC---Cc
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---ST 78 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~---~~ 78 (142)
+.+|||.++++.|++.+++.+ ++++|+|+||+|..++|+|++++++.++++.+. +.+++++.|||+|.+.... ..
T Consensus 84 ~~~ids~~~l~~l~~~~~~~~-~~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~-~~~~l~l~Gl~~H~~~~~~~~~~~ 161 (211)
T cd06808 84 VVTVDSLEELEKLEEAALKAG-PPARVLLRIDTGDENGKFGVRPEELKALLERAK-ELPHLRLVGLHTHFGSADEDYSPF 161 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHhC-CCceEEEEEcCCCCCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHH
Confidence 568999999999999998887 789999999998668999999999999999999 9999999999999997322 23
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHH---HHcCCcEEecCc
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGS 128 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a---~~~g~t~VR~G~ 128 (142)
..+++++.++++.+++. |+. +..+|+|+|.++... ++.+.|+||||+
T Consensus 162 ~~~~~~~~~~~~~l~~~-~~~--~~~i~~Ggg~~~~~~~~~~~~~~~~vR~G~ 211 (211)
T cd06808 162 VEALSRFVAALDQLGEL-GID--LEQLSIGGSFAILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred HHHHHHHHHHHHHHHhc-CCC--CCEEEECCCCCcCcCCCCCCCceEEeCCCC
Confidence 57889999999998875 765 678999999998877 677899999996
No 24
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.83 E-value=4.7e-20 Score=149.97 Aligned_cols=121 Identities=22% Similarity=0.276 Sum_probs=100.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC---
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~--- 77 (142)
+.+|+|.++++.+++.+ .+ ++++|||+|||| |+|+|+.++++.++++.+. .+++|++.|+|||++. |...
T Consensus 94 ~~~v~s~~~l~~l~~~~--~~-~~~~v~l~vDtG--m~R~Gi~~~e~~~~~~~i~-~~~~l~l~Gi~tH~a~ad~~~~~~ 167 (354)
T cd06827 94 WTVVHSEEQLEWLEQAA--LS-KPLNVWLKLDSG--MHRLGFSPEEYAAAYQRLK-ASPNVASIVLMTHFACADEPDSPG 167 (354)
T ss_pred EEEECCHHHHHHHHHhc--CC-CCeEEEEEeeCC--cCCCCCCHHHHHHHHHHHH-hCCCceEEEEEeeccCCCCCCcHH
Confidence 57899999999999987 35 789999999999 9999999988999999998 8999999999999997 3222
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032392 78 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
...|+++|.++.+. +. ...|+++|......++.+.+|||||+.+||..|..
T Consensus 168 ~~~Q~~~F~~~~~~------~~---~~~h~~nS~~~~~~~~~~~d~vR~G~~lyG~~p~~ 218 (354)
T cd06827 168 TAKQLAIFEQATAG------LP---GPRSLANSAAILAWPEAHGDWVRPGIMLYGASPFA 218 (354)
T ss_pred HHHHHHHHHHHHhc------cC---CCeeecCCHHHHCCccccCceEccCceeeCCCCCc
Confidence 24677787776553 11 13588999988777888999999999999987753
No 25
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.83 E-value=5.1e-20 Score=150.89 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=107.6
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHccCCCeeEeeEeeecCCCCC----
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---- 76 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~-~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~---- 76 (142)
...|||.+.++.|++.+.+.+ ++++|+|+||+| |+|.|+. ++++.++++.+. ++|+|++.|||+|.++.+.
T Consensus 102 ~~~vds~~~l~~L~~~a~~~g-~~~~v~i~vn~g--~~R~G~~~~~~~~~l~~~i~-~~~~l~l~Gi~~~~G~~~~~~~~ 177 (382)
T cd06818 102 FCLVDSVDNVRALAAFFAALE-RPLNVLIELGVP--GGRTGVRTEAEALALADAIA-ASPALRLAGVEGYEGVAAHDDSE 177 (382)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CceEEEEEECCC--CCCCCCCCHHHHHHHHHHHH-cCCCceEeEEEeeccccccCCCh
Confidence 368999999999999998888 889999999997 9999996 577899999999 9999999999999876311
Q ss_pred C----cHHHHHHHHHHHHHHHHHhCC-CCCCCeEEecCchhHHHHHHc--C-------CcEEecCccccCCCcc
Q 032392 77 S----TPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSGDFEQAIEM--G-------STSVRIGSTIFGPREY 136 (142)
Q Consensus 77 ~----~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~~~~~a~~~--g-------~t~VR~G~~ifg~~~~ 136 (142)
. ..+.|+++.++++.|+++ +. ..+++++|+|||+++..+.+. + .+++|||+|+|+|..|
T Consensus 178 ~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~ilSgGgT~~~~~~~~~~~~~~~~~~~~~el~pG~y~~~D~g~ 250 (382)
T cd06818 178 ETLAAVRAFLARAVDLARRLAER-GLFPDRELILTAGGSAWFDLVAEALAALALDGPVTLVLRSGCYVTHDHGI 250 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCCHhHHHHHHhhcccccCCceeEEEecCeeEEecHHH
Confidence 1 125688899999999877 43 223678999999999986432 2 5899999999999754
No 26
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.83 E-value=7.1e-20 Score=149.15 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=105.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh-h-HHHHHHHHHccCCCeeEeeEeeecCCCCC--C
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-S-CLGIVEHVRLRCPNLEFSGLMTIGMPDYT--S 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~-~-~~~l~~~i~~~~~~l~l~Gl~th~~~~~~--~ 77 (142)
+..|||.+.++.|++.+.+.+ ++++|+|+||+| |+|+|+.++ + +.++++.+. . ++|++.|+|+|.++.+. +
T Consensus 102 ~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~-~-~~l~l~Gi~~H~G~~~~~~d 176 (374)
T cd06812 102 TILLDSVEQAQAVAAFSRQHG-VRFPVLIEIDCD--GHRGGIAPDSDALLEIARILH-D-GGAELRGVLTHAGESYACRT 176 (374)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-c-CCceEEEEEccCCcccCCCC
Confidence 468999999999999998888 899999999999 899999874 3 567777776 4 78999999999976321 1
Q ss_pred ---c----HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHH-cCCcEEecCccccCCCccc
Q 032392 78 ---T----PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ---~----~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~-~g~t~VR~G~~ifg~~~~~ 137 (142)
. .++++.+.++.+.+++. |++ +..+|+|+|+++..+.. .+.|++|||+|+|+|..|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~v~~Ggt~~~~~~~~~~~~~el~~G~y~~~D~~~~ 241 (374)
T cd06812 177 PEALAAAAEQERAAAVRAAERLRAA-GLP--CPVVSVGSTPTAHFAEDLTGVTEVRAGVYVFFDLVMA 241 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCC--CCEEeecCChhhhhhcccCCceEeccCceeeccHHHH
Confidence 1 14556688888888876 876 78999999999887644 5779999999999998774
No 27
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.83 E-value=7.4e-20 Score=162.12 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=109.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC---
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~--- 77 (142)
+++|+|.++++.+++.+.+.+.++++|||+|||| |+|.|+.++++.++++.+. .+++|++.|+|||+++ |...
T Consensus 553 ~~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDtG--m~R~G~~~~~~~~~~~~i~-~~~~l~~~Gi~tH~~~ad~~~~~~ 629 (822)
T PRK11930 553 EPEIYSFRLLDAFIKAAQKKGITGYPIHIKIDTG--MHRLGFEPEDIPELARRLK-KQPALKVRSVFSHLAGSDDPDHDD 629 (822)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCceEEEEEeeCC--CCCCCCChHHHHHHHHHHH-hCCCCcEEEEECCCCCCCCCCchH
Confidence 5789999999999999876531579999999999 9999999988999999998 9999999999999998 3322
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032392 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
..+|+++|.++.+.+++..+.. +.+|+++|......++.+.|+||||+.|||..|.
T Consensus 630 ~~~~q~~~f~~~~~~l~~~~~~~---~~~h~~nS~~~~~~~~~~~d~vR~G~~lyG~~p~ 686 (822)
T PRK11930 630 FTRQQIELFDEGSEELQEALGYK---PIRHILNSAGIERFPDYQYDMVRLGIGLYGVSAS 686 (822)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC---CcEEccCCHHHhCCccccCCeEeeCceeECCCCC
Confidence 3579999999999998763332 3679999999877788889999999999998774
No 28
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=9.3e-20 Score=148.00 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=104.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC---
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~--- 77 (142)
.++|.|.++++.+.+.+.+. ++++|||+|||| |||+|+.+++...++..+. .++++.+.|+||||+. |+.+
T Consensus 100 ~~~v~s~~ql~~l~~~~~~~--~~l~vhLkiDTG--M~RlG~~~~e~~~~~~~~~-~~~~~~~~gi~SHfa~ADe~~~~~ 174 (360)
T COG0787 100 TPVVNSLEQLEALKNAALKN--KPLKVHLKIDTG--MNRLGLRPEEAVALAIDLI-ALKNLDLEGIFSHFACADEPEDPY 174 (360)
T ss_pred eEEECCHHHHHHHHHhhhhc--CceEEEEEECCC--CCcCCCChHHHHHHHHHHh-hccCCceEEEEcccCCCCCCCChH
Confidence 57899999999999998764 589999999999 9999999999888888888 8888889999999998 4432
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccc
Q 032392 78 TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~ 138 (142)
...|+++|. +... +++ +..+|+++|......++.++|+||||+.+||..|...
T Consensus 175 ~~~Q~~~F~-----~~~~-~~~--~~~~h~aNSa~~~~~~~~~~d~vRpGi~lYG~~P~~~ 227 (360)
T COG0787 175 TLKQLERFN-----LAKQ-GLP--GELSHLANSAGLLLGPDYHFDMVRPGIALYGLSPSGG 227 (360)
T ss_pred HHHHHHHHH-----HHhc-cCC--CceEEEeccHHHhcCcccccceeecceeeecCCcccc
Confidence 347888887 2333 555 5778889998877777899999999999999998763
No 29
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.79 E-value=1.2e-18 Score=143.25 Aligned_cols=128 Identities=19% Similarity=0.279 Sum_probs=100.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCC----------ChhhHHHHHHHHHccCCCeeEeeEeeec
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI----------DPSSCLGIVEHVRLRCPNLEFSGLMTIG 71 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~----------~~~~~~~l~~~i~~~~~~l~l~Gl~th~ 71 (142)
...|||.++++.|++.+.+.+ ++++|+|+||+| |+|.|+ +++++.++++.+. ++++|++.|||+|+
T Consensus 107 ~~~Vds~~~l~~l~~~a~~~~-~~~~V~l~IDtG--m~R~G~~~G~~Rs~~~~~~~~~~l~~~i~-~~~~l~l~Gi~th~ 182 (388)
T cd06813 107 TLMVDSVEHLDLLDAVAAPMR-VEVRVCIDIDAS--LRFGGLHFGVRRSPLHTPAQALALAKAIA-ARPGLRLVGLMGYE 182 (388)
T ss_pred EEEEcCHHHHHHHHHHHHhcC-CceEEEEEECCC--ccccccccCcCCCCCCCHHHHHHHHHHHh-cCCCcEEEEEEEEc
Confidence 467999999999999998777 899999999998 788776 3688999999999 99999999999997
Q ss_pred CC-----CCCCc---------------HHHH-HHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHH-HcCCcEEecCcc
Q 032392 72 MP-----DYTST---------------PENF-RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGST 129 (142)
Q Consensus 72 ~~-----~~~~~---------------~~~~-~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~-~~g~t~VR~G~~ 129 (142)
++ |..+. ..++ ++..++++.|++. |++ +..++.|+|++++... +.+.||||||++
T Consensus 183 g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~-g~~--~~~vNsgGt~s~~~~~~~~~~tevrpGs~ 259 (388)
T cd06813 183 AQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAE-GED--LEFVNGGGTGSLESTAADAVVTEVTAGSG 259 (388)
T ss_pred hhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CCEEeCCCchhheeecCCCCceEeccceE
Confidence 76 11111 0223 2233666777765 765 6788999999987543 467799999999
Q ss_pred ccCCCcc
Q 032392 130 IFGPREY 136 (142)
Q Consensus 130 ifg~~~~ 136 (142)
+||+.++
T Consensus 260 lyg~~~~ 266 (388)
T cd06813 260 LYAPALF 266 (388)
T ss_pred Eecchhh
Confidence 9998776
No 30
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.63 E-value=2.7e-15 Score=122.22 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=101.6
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T 78 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~ 78 (142)
+..|||.+.++.+++.+.+.+ ++++|+|++|+| ++|+|+.. +....+.+.+. ..++|++.|+|+|.+|.+.. .
T Consensus 115 ~~~iDs~~~~~~l~~~~~~~~-~pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~~~l~~~Gv~~y~gh~~~~~~~ 190 (368)
T COG3616 115 SVLIDSVEQLDALAALARDAG-KPLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AAPGLRLAGVMTYPGHSYGPGSE 190 (368)
T ss_pred EEEeCCHHHHHHHHHHHHhcC-CCeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hccceEEeeeecccccccCCcch
Confidence 356999999999999999998 999999999999 89999855 56677777888 89999999999999884333 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHH-cCCcEEecCccccCCCccc
Q 032392 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~-~g~t~VR~G~~ifg~~~~~ 137 (142)
.+...+ ..+...+... |.. ++.+|.|+|+++..+.. .+.+++|+|+|+|.|..+.
T Consensus 191 ~~~~~~-~~a~~~~~~~-g~~--~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~~D~~~~ 246 (368)
T COG3616 191 VAAAER-VHAAALLGAV-GRA--APVLTSGGTPTAELVAGLSSTTELRAGNYVFNDLVQV 246 (368)
T ss_pred hhhhhh-hhHHHHhccc-CCc--cceeecCCCCchhhhccCCcceeeccCceeehhhhhh
Confidence 233333 3344444444 665 88999999999998764 3569999999999997653
No 31
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.51 E-value=5.9e-14 Score=114.45 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=88.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC-----------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-----------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg-----------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.+|||.++++.|.+.+.+.+ ++++|+|+||++ ...+|||++++++.++++.++ +++++++.|||+|
T Consensus 100 ~i~vds~~el~~l~~~a~~~~-~~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~~~~~~~~~~~-~~~~l~l~Glh~h 177 (382)
T cd06839 100 TINVESLEELERIDALAEEHG-VVARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLARIA-ALPNLRFVGLHIY 177 (382)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCCCCCccccCCCCCCcCCCHHHHHHHHHHHH-hCCCCcEEEEEEe
Confidence 568999999999999998877 789999999962 123899999999999999998 8899999999999
Q ss_pred cCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh
Q 032392 71 GMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 112 (142)
Q Consensus 71 ~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~ 112 (142)
.+. +.+...++++++.++++++.+++|.+ +..+++|++..
T Consensus 178 ~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~idiGGG~~ 220 (382)
T cd06839 178 PGTQILDADALIEAFRQTLALALRLAEELGLP--LEFLDLGGGFG 220 (382)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCC--CCEEEecCccc
Confidence 664 32334578889999998888766766 78899987653
No 32
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.50 E-value=2.8e-13 Score=109.88 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=87.0
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-----------CCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-----------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-----------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.+|||+++++.|++.+++.+ ++++|+|+||+|. ..+|+|++++++.++++.+. +++ +++.|||+|
T Consensus 94 ~~~vds~~el~~l~~~~~~~~-~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~-~~~-l~l~Gl~~H 170 (368)
T cd06810 94 HIVVDSLDELERLNELAKKLG-PKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAK-ELD-LRLVGLHFH 170 (368)
T ss_pred EEEeCCHHHHHHHHHHHHHhC-CCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHH-hCC-CcEEEEEEc
Confidence 578999999999999998877 7899999999983 23899999999999999998 888 999999999
Q ss_pred cCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 71 GMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 71 ~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.+. +.+...+.++++.++++.+++. |.+ +..+++|+
T Consensus 171 ~gs~~~d~~~~~~~~~~~~~~~~~l~~~-g~~--~~~id~GG 209 (368)
T cd06810 171 VGSQILDLETIVQALSDARELIEELVEM-GFP--LEMLDLGG 209 (368)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCC
Confidence 986 3334557888899999999884 765 78999953
No 33
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.46 E-value=1e-12 Score=106.76 Aligned_cols=104 Identities=26% Similarity=0.272 Sum_probs=87.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~------------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||.+++++|++.+.+.+ ++++|+|+|+ +|...+|+|++++++.++++.+. +++++++.|||+
T Consensus 97 ~~~ids~~el~~l~~~a~~~~-~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~~~~~~-~~~~l~l~Gi~~ 174 (373)
T cd06828 97 RINVDSLSELERLGEIAPELG-KGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAK-ELPGLKLVGLHC 174 (373)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEE
Confidence 568999999999999998887 7899999886 45445999999999999999999 899999999999
Q ss_pred ecCC-C--CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032392 70 IGMP-D--YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 70 h~~~-~--~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
|.+. . .+...++++++.++.+.+++. |.. +..+++|+.
T Consensus 175 H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~idiGGG 215 (373)
T cd06828 175 HIGSQILDLEPFVEAAEKLLDLAAELREL-GID--LEFLDLGGG 215 (373)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCCC
Confidence 9885 2 233458899999999999864 765 788998764
No 34
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.44 E-value=2e-12 Score=107.41 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=88.5
Q ss_pred eEecCCHHHHHHHHHHHHh-cCCCCceEEEEEeCCC--CCCccCCChhhHHHHHHHHHccC-CCeeEeeEeeecCC-CCC
Q 032392 2 VEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTSG--EESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMTIGMP-DYT 76 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~-~~~~~~~v~I~v~tg~--~~~R~G~~~~~~~~l~~~i~~~~-~~l~l~Gl~th~~~-~~~ 76 (142)
+..|||.++++.|.+.+++ .+ ++++|+|+||++. .++|||++++++.++++.++ ++ +++++.|||+|.++ +.+
T Consensus 105 ~i~vDs~~el~~l~~~a~~~~~-~~~~v~lRIn~~~~~~~sRfGi~~~e~~~~~~~i~-~~~~~l~l~Glh~H~gs~~~~ 182 (423)
T cd06842 105 TIAVDSLDELDRLLALARGYTT-GPARVLLRLSPFPASLPSRFGMPAAEVRTALERLA-QLRERVRLVGFHFHLDGYSAA 182 (423)
T ss_pred EEEECCHHHHHHHHHHHHhcCC-CCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCeEEEEEEEcCCCCHH
Confidence 4689999999999999987 66 7899999999974 57999999999999999998 88 89999999999987 333
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCch
Q 032392 77 STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~ 111 (142)
...+.++++.++++.+++. |++ +..|++|+.-
T Consensus 183 ~~~~~~~~~~~~~~~l~~~-g~~--~~~idiGGG~ 214 (423)
T cd06842 183 QRVAALQECLPLIDRARAL-GLA--PRFIDIGGGF 214 (423)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCCCc
Confidence 3457788888888888775 766 7899987663
No 35
>PLN02537 diaminopimelate decarboxylase
Probab=99.42 E-value=2.7e-12 Score=106.08 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=85.2
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC----------CCC--CccCCChhhHHHHHHHHHccCC-CeeEeeEe
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS----------GEE--SKSGIDPSSCLGIVEHVRLRCP-NLEFSGLM 68 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg----------~~~--~R~G~~~~~~~~l~~~i~~~~~-~l~l~Gl~ 68 (142)
..+|||.+++++|.+.+.+.+ ++++|+|+||.+ ++| +|||++++++.++++.++ +++ +|++.|||
T Consensus 111 ~i~ids~~el~~l~~~a~~~~-~~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~~~~~~~~~~-~~~~~l~l~Glh 188 (410)
T PLN02537 111 FVNVDSEFDLENIVEAARIAG-KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK-AHPNELKLVGAH 188 (410)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCcEEEEE
Confidence 468999999999999998887 789999999943 224 999999999999999998 888 89999999
Q ss_pred eecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 69 TIGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 69 th~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
+|.++ +.+...+.++++.++++.+++. |++ +..+++|+
T Consensus 189 ~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~-g~~--~~~idiGG 229 (410)
T PLN02537 189 CHLGSTITKVDIFRDAAVLMVNYVDEIRAQ-GFE--LSYLNIGG 229 (410)
T ss_pred eccCCCCCchHHHHHHHHHHHHHHHHHHHc-CCC--ccEEEcCC
Confidence 99986 2233456777788888888876 876 77887764
No 36
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.41 E-value=3.5e-12 Score=105.36 Aligned_cols=103 Identities=25% Similarity=0.273 Sum_probs=86.8
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeC------------CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t------------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.+|||.++++.|.+.+.+.+ ++++|+|+||. |...+|||++++++.++++.+. +++++++.|||+|
T Consensus 120 i~iDs~~el~~l~~~a~~~~-~~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~~~~~~~~~~~~~-~~~~l~l~Glh~H 197 (417)
T TIGR01048 120 INVDSESELELLNEIAPELG-KKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYLYAL-QLPHLELVGIHCH 197 (417)
T ss_pred EEeCCHHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEEe
Confidence 68999999999999998877 78999999985 3344999999999999999998 9999999999998
Q ss_pred cCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032392 71 GMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 71 ~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
.+. +.+...++++++.++++.+++. |.+ +..+++|+.
T Consensus 198 ~gs~~~d~~~~~~~~~~~~~~~~~l~~~-g~~--l~~idiGGG 237 (417)
T TIGR01048 198 IGSQITDLSPFVEAAEKVVDLVEELKAE-GID--LEFLDLGGG 237 (417)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhc-CCC--ccEEEeCCc
Confidence 876 2233457888899999998865 765 789999874
No 37
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.39 E-value=5.6e-12 Score=100.23 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=110.8
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh---hhHHHHHHHHHccCCCeeEeeEeeecCC--CCC
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYT 76 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~---~~~~~l~~~i~~~~~~l~l~Gl~th~~~--~~~ 76 (142)
+-++.+++.+++++++|.+.| +..+|++.||.| .-|-|+-+ +++.+.++++. .+|++++.||-|+|+. +..
T Consensus 96 vs~~sel~~arqlse~A~~~G-k~h~VlLmVd~~--DlreG~~~~~~~~l~~~V~eI~-~lkGi~~vGlgTnF~Cfg~v~ 171 (353)
T COG3457 96 VSTVSELDTARQLSEAAVRMG-KVHDVLLMVDYG--DLREGQWGFLIEDLEETVEEIQ-QLKGIHLVGLGTNFPCFGDVL 171 (353)
T ss_pred eEEEecHHHHHHHHHHHHHhC-cceeEEEEEEcc--cccCcchhhHHHHHHHHHHHHh-cCCCceEEeeecccccccCcC
Confidence 357889999999999999999 999999999999 58999754 88999999999 9999999999998887 777
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHH---HcCCcEEecCccccCCC
Q 032392 77 STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI---EMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~---~~g~t~VR~G~~ifg~~ 134 (142)
+..+-+..+.+..+.|++..|+. ++.+|+|++.++..-+ ..+.|..|||-++++-.
T Consensus 172 PTp~n~~~ll~~~~~lE~~~Gi~--l~~vsagnats~~~L~~~~~~~inhlriG~al~~g~ 230 (353)
T COG3457 172 PTPENLESLLQGKKKLEASSGIQ--LKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGGV 230 (353)
T ss_pred CCcccHHHHHHHHHHHHHhcCce--eEEecCCCccchhhhhcccccccccccccceeeccc
Confidence 77777888888888888877887 8899999998877653 55789999999999986
No 38
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.38 E-value=7.7e-12 Score=102.23 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=82.6
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC--------C----CccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE--------E----SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~--------~----~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.+|||.+++++|++.+.+.+ ++++|+|+||++.+ | +|||++++++.++++.+. ++++|++.|||+|
T Consensus 95 i~vds~~el~~l~~~a~~~~-~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~-~~~~l~~~Glh~H 172 (377)
T cd06843 95 IHVESELELRRLNAVARRAG-RTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR-DLPNIRLRGFHFH 172 (377)
T ss_pred EEeCCHHHHHHHHHHHHHcC-CCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHH-hCCCccEEEEEEE
Confidence 46999999999999998887 78999999998622 2 499999999999999998 8999999999999
Q ss_pred cCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 71 GMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 71 ~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.+. +.+...+.++.+..+..++.++.|++ +..+.+|+
T Consensus 173 ~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~idiGG 212 (377)
T cd06843 173 LMSHNLDAAAHLALVKAYLETARQWAAEHGLD--LDVVNVGG 212 (377)
T ss_pred cCcCcCChHHHHHHHHHHHHHHHHHHHHhCCC--CcEEEecC
Confidence 985 33334456666666666666666776 67887764
No 39
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.33 E-value=1.8e-11 Score=100.09 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=79.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC---CCccCCChhhHHHHHHHHH--ccCCCeeEeeEeeecCCC--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE---ESKSGIDPSSCLGIVEHVR--LRCPNLEFSGLMTIGMPD-- 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~---~~R~G~~~~~~~~l~~~i~--~~~~~l~l~Gl~th~~~~-- 74 (142)
+.+|||+++++.|.+.+.+.+ ++++|+|+||++.+ |+|||++++++.++++.+. .+.+++++.|||+|.+..
T Consensus 102 ~i~ids~~el~~l~~~~~~~~-~~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~ 180 (379)
T cd06841 102 LINIDSFDELERILEIAKELG-RVAKVGIRLNMNYGNNVWSRFGFDIEENGEALAALKKIQESKNLSLVGLHCHVGSNIL 180 (379)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CcceEEEEECCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCCCeeEEEEEecCCCccC
Confidence 568999999999999998877 78999999999766 8999999988766666554 045899999999999862
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 75 -YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 75 -~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.+...++.+++..+++.+ . |.+ +..+.+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~--~-g~~--~~~idiGG 211 (379)
T cd06841 181 NPEAYSAAAKKLIELLDRL--F-GLE--LEYLDLGG 211 (379)
T ss_pred ChHHHHHHHHHHHHHHHHh--c-CCC--CCEEEeCC
Confidence 223446777777777776 2 655 66776643
No 40
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.32 E-value=6.4e-12 Score=103.29 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=77.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-----CC------CccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-----EE------SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-----~~------~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.+|||.++++.|.+.+.+.+ ++++|+|+||++. ++ +|||++++++.++++.++ +. +|++.|+++|
T Consensus 117 ~i~vDs~~el~~l~~~a~~~~-~~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~~~~~~~~-~~-~l~l~Glh~h 193 (398)
T TIGR03099 117 LINVESLRELNRLAALSEALG-LRARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVPAALAFIK-AA-DLDFQGFHIF 193 (398)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHHHHHHHHHH-hC-CCeEEEEEec
Confidence 568999999999999998877 7899999999731 23 999999999999999998 77 8999999888
Q ss_pred cCCCC-C--CcHHHHHHHH-HHHHHHHHHhCCCCCCCeEEecCch
Q 032392 71 GMPDY-T--STPENFRTLL-NCRAEVCKALGMAEDQCELSMGMSG 111 (142)
Q Consensus 71 ~~~~~-~--~~~~~~~~~~-~~~~~l~~~~g~~~~~~~lS~G~s~ 111 (142)
.+.+. + ...+..++.. .+.+.+++ .|.+ +..+++|++.
T Consensus 194 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~idiGGG~ 235 (398)
T TIGR03099 194 AGSQNLNAEAIIEAQAKTLALALRLAES-APAP--VRVINIGGGF 235 (398)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHH-hCCC--CCEEEeCCcc
Confidence 87532 2 1223333333 34444444 4776 6788888764
No 41
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=99.12 E-value=1.1e-09 Score=90.74 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=84.0
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC-----------CCCCccCCChhhHHHHHHHHHccC-CCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-----------GEESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg-----------~~~~R~G~~~~~~~~l~~~i~~~~-~~l~l~Gl~t 69 (142)
+.+|||+++++.|.+.+.+.+ ++++|.|+||.+ ...+|||++++++.++++.++ +. +++++.||+.
T Consensus 115 ~i~vDs~~EL~~l~~~a~~~~-~~~~v~lRinp~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~-~~~~~l~l~GlH~ 192 (409)
T cd06830 115 IIVIEKLSELDLILELAKKLG-VKPLLGVRIKLASKGSGKWQESGGDRSKFGLTASEILEVVEKLK-EAGMLDRLKLLHF 192 (409)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCceEEEEEccCCCCCcceeccCCCCCCCCCCHHHHHHHHHHHH-hcCcCCeEEEEEE
Confidence 358999999999999998887 789999999964 234899999999999999998 76 5899999988
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+. +.+...+.++++.++++.+++. |++ +..|.+|+
T Consensus 193 H~GSq~~~~~~~~~~~~~~~~~~~~~~~~-g~~--l~~iDiGG 232 (409)
T cd06830 193 HIGSQITDIRRIKSALREAARIYAELRKL-GAN--LRYLDIGG 232 (409)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC--CcEEEcCC
Confidence 8764 4444567888888888888875 765 67776653
No 42
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=99.08 E-value=1.5e-09 Score=89.68 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=85.2
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeC------------CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t------------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
..|||.+++++|++.+.+. +.+|.++||+ |...+|||+.++++.+.++.+. +.+++++.||+.|
T Consensus 122 i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~~~-~~~~l~~~Glh~H 197 (394)
T COG0019 122 INVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLERAA-KLLGLELVGLHFH 197 (394)
T ss_pred EEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCccccccCCCHHHHHHHHHHHH-hcCCCceEEEEEe
Confidence 5799999999999998753 5789999994 5667999999999889999998 8999999999776
Q ss_pred cC-C--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032392 71 GM-P--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 71 ~~-~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
-+ + |.+...+.++++.+++.++.+.+|+. +..+++|+-
T Consensus 198 iGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~--l~~inlGGG 238 (394)
T COG0019 198 IGSQITDLDPFEEALAKVEELFGRLAEELGIQ--LEWLNLGGG 238 (394)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCC
Confidence 65 4 55556789999999999996555877 788988754
No 43
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.06 E-value=1.7e-09 Score=87.84 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=75.1
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCC------ccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES------KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY 75 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~------R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~ 75 (142)
..+||+++++.+.+.+.. .++.++|.++++ |+ |+|++++++.++++.+. . .++++.|||+|.+. +.
T Consensus 95 ~~~ds~~el~~l~~~~~~---~~v~vri~~~~~--~~~~~~~sRfGi~~~~~~~~~~~~~-~-~~~~~~Glh~H~gs~~~ 167 (362)
T cd00622 95 FTFDSEDELEKIAKHAPG---AKLLLRIATDDS--GALCPLSRKFGADPEEARELLRRAK-E-LGLNVVGVSFHVGSQCT 167 (362)
T ss_pred EEECCHHHHHHHHHHCCC---CEEEEEEeeCCC--CCCCcccCCCCCCHHHHHHHHHHHH-H-cCCEEEEEEEeCCCCCC
Confidence 347999999999998742 346666666666 55 89999999999999988 7 58999999999986 32
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 76 --TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 76 --~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
+...++.+++.++++.+++. |.. +..+.+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~id~GG 200 (362)
T cd00622 168 DPSAYVDAIADAREVFDEAAEL-GFK--LKLLDIGG 200 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCC--cCEEEeCC
Confidence 22457888899999988874 765 67786654
No 44
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=98.97 E-value=5.7e-09 Score=80.90 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=77.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhh-HHHHHHHHHccCCCeeEeeEe
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSS-CLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~-~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
+..|||+++++.|.+.+.+. +|.|+||.+ +..+|||+++++ +.++++.++ ..+ +++.||+
T Consensus 89 ~i~vDs~~el~~l~~~~~~~-----~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~~~~-~~~-l~l~GlH 161 (251)
T PF02784_consen 89 TINVDSLEELERLAELAPEA-----RVGLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALERAK-ELG-LRLVGLH 161 (251)
T ss_dssp EEEESSHHHHHHHHHHHCTH-----EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHHHHH-HTT-EEEEEEE
T ss_pred EEEeCCHHHHHHHhccCCCc-----eeeEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHHhhc-cce-EEEEEee
Confidence 45799999999999998542 788899854 234799999998 999999998 888 9999999
Q ss_pred eecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 69 TIGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 69 th~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.|.+. +.+...+..+.+.++++.+.+++|++ ++..|.+|+
T Consensus 162 ~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~idiGG 204 (251)
T PF02784_consen 162 FHVGSQILDAEAFRQAIERLLDLAEELKEELGFE-DLEFIDIGG 204 (251)
T ss_dssp E-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTT-T-SEEEEES
T ss_pred eeeccCCcchHHHHHHHHHHHHHHhhhccccccc-cccEEEeeC
Confidence 99764 33334578888888999998666754 156787764
No 45
>PRK05354 arginine decarboxylase; Provisional
Probab=98.84 E-value=5.4e-08 Score=84.74 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=82.2
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-----------CCCCCccCCChhhHHHHHHHHHccCCCe-eEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-----------SGEESKSGIDPSSCLGIVEHVRLRCPNL-EFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-----------g~~~~R~G~~~~~~~~l~~~i~~~~~~l-~l~Gl~t 69 (142)
+..|||+++++.|.+.+.+.+ ++..|.|+|+. |+..+|||++.+++.++++.++ +.+.+ ++.||+.
T Consensus 174 ~ivIDs~~EL~~I~~~a~~~~-~~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~~ei~~~i~~lk-~~~~l~~L~GLHf 251 (634)
T PRK05354 174 FIVIEKLSELELILEEAKELG-VKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATEVLEAVERLR-EAGLLDCLQLLHF 251 (634)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH-hCCCCCceEEEEE
Confidence 468999999999999999887 77889899873 4557899999999999999999 88877 6999988
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEec
Q 032392 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 108 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 108 (142)
|.+. +.....+.++.+..++..|++. |.+ +..|.+|
T Consensus 252 HiGSQi~d~~~~~~al~e~~~~~~eL~~~-G~~--l~~LDIG 290 (634)
T PRK05354 252 HLGSQIANIRDIKTAVREAARFYVELRKL-GAP--IQYLDVG 290 (634)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEeC
Confidence 8764 3333457778888888888775 765 6777664
No 46
>PLN02439 arginine decarboxylase
Probab=98.83 E-value=6.1e-08 Score=83.37 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=82.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHccCCCee-EeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~-----------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~-l~Gl~t 69 (142)
+..|||+++++.|.+.+++.+ ++..|.|+|+ +|++.+|||++.+++.++++.++ +.+.+. +.||+.
T Consensus 111 ~IviDs~~EL~~I~~~a~~l~-~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~~ei~~~i~~lk-~~~~l~~L~GLHf 188 (559)
T PLN02439 111 VIVLEQEEELDLVIEASQRLG-VRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTATEIVRVVRKLR-KEGMLDCLQLLHF 188 (559)
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCceEEEEEecCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCceEEEEE
Confidence 468999999999999999887 6678888886 45567999999999999999999 888886 999988
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEec
Q 032392 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 108 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 108 (142)
|.+. +.......++.+..++..+++. |.+ +..+-+|
T Consensus 189 HiGSQi~d~~~~~~ai~e~~~l~~eL~~~-G~~--l~~lDIG 227 (559)
T PLN02439 189 HIGSQIPSTSLLKDGVSEAAQIYCELVRL-GAP--MRVIDIG 227 (559)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CcEEEec
Confidence 7764 4444567888888888888875 765 6777554
No 47
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=98.81 E-value=8.2e-08 Score=83.51 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=82.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHccCCCe-eEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCPNL-EFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~-----------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l-~l~Gl~t 69 (142)
+..|||+++++.|.+.+++.+ ++..|.|+|+ ||++.+|||++.+++.++++.++ +.+.+ ++.||+.
T Consensus 167 ~IvIDs~~EL~~I~~~a~~~~-~~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~~ei~~~i~~lk-~~~~l~~L~GLHf 244 (624)
T TIGR01273 167 FIVIEKLSELDLVIEEAKKLG-VKPKLGLRARLASKGSGKWASSGGEKSKFGLSATQILEVVRLLE-QNGLLDCLKLLHF 244 (624)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCceEEEEEecCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH-hcCCCCceEEEEE
Confidence 468999999999999999887 7888999997 34456899999999999999998 88766 4999988
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEec
Q 032392 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 108 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 108 (142)
|.+. +.......++.+..++..+++. |.+ +..+-+|
T Consensus 245 HiGSQi~d~~~~~~ai~~~~~i~~eL~~~-G~~--l~~LDIG 283 (624)
T TIGR01273 245 HIGSQISNIDDVKKGVREAARFYCELRKL-GAK--ITYVDVG 283 (624)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEeC
Confidence 7764 4344557888888888888875 765 6777664
No 48
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=98.73 E-value=3e-07 Score=76.56 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=70.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~------------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
...|||.++++.|++.+. ..+|+|+||.+. ..+|||++++++.++++.++ . ++|++.|||+
T Consensus 118 ~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~-~-~~l~l~GlH~ 190 (420)
T PRK11165 118 PVNAGSIDMLDQLGQVSP-----GHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAVIQ-R-YGLKLVGIHM 190 (420)
T ss_pred EEEECCHHHHHHHHHhcC-----CCcEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHHH-h-CCCcEEEEEE
Confidence 357999999999999974 257999999752 24779999888888887776 5 4799999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh
Q 032392 70 IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 112 (142)
Q Consensus 70 h~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~ 112 (142)
|.++.. ......+....+.+.+++. |.+ +..|++|+...
T Consensus 191 H~GS~~-~~~~~~~~~~~l~~~~~~~-g~~--~~~IdiGGGf~ 229 (420)
T PRK11165 191 HIGSGV-DYGHLEQVCGAMVRQVIEL-GQD--IEAISAGGGLS 229 (420)
T ss_pred eccCCC-ChHHHHHHHHHHHHHHHHh-CCC--CcEEEeCCCcc
Confidence 998632 2122222223334444443 765 78898887753
No 49
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=98.67 E-value=4.2e-07 Score=74.65 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=74.7
Q ss_pred EecCCHHHHHHHHHHHHh-cCCCCceEEEEEeCC------------CCCCccCCChh--hHHHHHHHHHccCCCeeEeeE
Q 032392 3 EGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTS------------GEESKSGIDPS--SCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~-~~~~~~~v~I~v~tg------------~~~~R~G~~~~--~~~~l~~~i~~~~~~l~l~Gl 67 (142)
..+||++++++|.+.+.+ .+ +..+|.|+||.+ ...+|||++++ ++.++++.+. ..++ +.||
T Consensus 96 i~iDS~~El~~i~~~a~~~~~-~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~~~~~~~~~~~~~~-~~~~--l~Gl 171 (379)
T cd06836 96 INIDNFQELERIDALVAEFKE-ASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEIIDAFA-RRPW--LNGL 171 (379)
T ss_pred EEECCHHHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCccccccCCCCCCCCcCcchhHHHHHHHHHh-cCCC--eEEE
Confidence 479999999999999977 55 678999999953 34699999987 5666776665 5554 5799
Q ss_pred eeecCC---CCCCcHHHHHHHHHHHHHHHHHhC-CCCCCCeEEecC
Q 032392 68 MTIGMP---DYTSTPENFRTLLNCRAEVCKALG-MAEDQCELSMGM 109 (142)
Q Consensus 68 ~th~~~---~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~lS~G~ 109 (142)
+.|.+. +.+...+.++++..+.+.+++.+| .+ +..|.+|+
T Consensus 172 H~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~--~~~IDiGG 215 (379)
T cd06836 172 HVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQ--ITRIDIGG 215 (379)
T ss_pred EEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CcEEEeCC
Confidence 998874 333345677778888888877655 34 67787754
No 50
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=98.52 E-value=7e-07 Score=73.88 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=70.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC----C--CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG----E--ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-- 73 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~----~--~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-- 73 (142)
+.++||++++++|.+.+ +..+|+|+|+.+. . .+|||++++++.++++.++ +. ++++.||+.|.+.
T Consensus 105 ~i~vDS~~El~~i~~~~-----~~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~-~~-~l~~~Gih~HiGS~~ 177 (394)
T cd06831 105 IMTCDNEIELKKIARNH-----PNAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAK-EL-DVQIVGVKFHVSSSC 177 (394)
T ss_pred EEEECCHHHHHHHHHhC-----CCCcEEEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHH-HC-CCeEEEEEEECCCCC
Confidence 35899999999999865 2357888888532 1 2799999999999999998 75 7999999998775
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 74 -DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
+.+...+..+....+++.+++ .|.+ +..|.+|+
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~-~g~~--l~~ldiGG 211 (394)
T cd06831 178 KEYQTYVHALSDARCVFDMAEE-FGFK--MNMLDIGG 211 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCC--CCEEEeCC
Confidence 222233445444555555554 4776 67887764
No 51
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=98.42 E-value=4.7e-06 Score=68.61 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=66.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||+++++.|.+.+++.+ +..+|.|+||.+ ...+|||++++++.+.+ .+++.||+.
T Consensus 94 ~i~idS~~el~~l~~~a~~~~-~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~--------~~~i~GlH~ 164 (380)
T TIGR01047 94 HIIFNSLAQWARYRHLVEGKN-SAVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHFEESL--------LDGINGLHF 164 (380)
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHHhHhH--------hhcCcEEEE
Confidence 458999999999999998766 678999999964 23699999998765431 246779988
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 70 IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|-+.. ...+.|.++.+....+.+.++.+ +..+.+|+
T Consensus 165 HiGS~--~~~~~~~~~i~~~~~~~~~~~~~--~~~iDiGG 200 (380)
T TIGR01047 165 HTLCE--KDADALERTLEVIEERFGEYLPQ--MDWVNFGG 200 (380)
T ss_pred ecCCC--CCHHHHHHHHHHHHHHHHHhhCC--CCEEEeCC
Confidence 88753 22455666655555555443333 67787764
No 52
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=98.42 E-value=6.1e-06 Score=67.58 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=67.0
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.++||+++++++.+.+. ..+|.|+||.+ ...+|||++++++.++++.++ .. ++++.|++.|
T Consensus 106 i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~~~-~~-~l~l~GlhfH 178 (368)
T cd06840 106 VTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAK-KA-GIIVIGLHAH 178 (368)
T ss_pred EEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHHH-hC-CCcEEEEEEE
Confidence 47999999999988863 35788899864 235999999999999999887 66 7999999888
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEec
Q 032392 71 GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 108 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 108 (142)
-+..... .+.|.+..+....+.+. +.+ +..+.+|
T Consensus 179 ~GS~~~~-~~~~~~~~~~~~~l~~~-~~~--~~~idiG 212 (368)
T cd06840 179 SGSGVED-TDHWARHGDYLASLARH-FPA--VRILNVG 212 (368)
T ss_pred CCCCCCC-HHHHHHHHHHHHHHHHh-cCC--CCEEEec
Confidence 8752211 23344444444455544 323 5677665
No 53
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.13 E-value=5.5e-05 Score=68.27 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=67.0
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.++||+++++.|.+.+.+ .+|.|+||.+ ...+|||++++++.++++.+. . .++++.||+.|
T Consensus 597 i~vDS~~EL~~i~~~~~~-----~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~-~-~~l~l~GlH~H 669 (861)
T PRK08961 597 VTLDNVEPLRNWPELFRG-----REVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEFVDLAK-T-LGITVVGLHAH 669 (861)
T ss_pred EEECCHHHHHHHHHhCCC-----CcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH-h-CCCCEEEEEEe
Confidence 479999999999998743 4677888864 235899999999999999887 6 47999999998
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEec
Q 032392 71 GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 108 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G 108 (142)
.+..... .+.|.+..+.+..+.+. ..+ +..+.+|
T Consensus 670 ~GS~~~~-~~~~~~~~~~~~~l~~~-~~~--~~~iDiG 703 (861)
T PRK08961 670 LGSGIET-GEHWRRMADELASFARR-FPD--VRTIDLG 703 (861)
T ss_pred cCCCCCC-HHHHHHHHHHHHHHHHh-ccC--CcEEEec
Confidence 8752111 23444444444445444 323 5677765
No 54
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00017 Score=59.71 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=73.8
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC--
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-- 73 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~------~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-- 73 (142)
+-|+||.+++.++.+.- +..+++++|.|... ..|||++.+++..|++.++ .+ +|++.|+..|-+.
T Consensus 148 ~~tfDne~el~kv~~~h-----P~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lLd~ak-~l-~lnvvGvsfHvGSgc 220 (448)
T KOG0622|consen 148 VMTFDNEEELEKVAKSH-----PNANLLLRIATDDSTATCRLNLKFGCSLDNCRHLLDMAK-EL-ELNVVGVSFHVGSGC 220 (448)
T ss_pred EEeecCHHHHHHHHHhC-----CCceEEEEEccCCCcccccccCccCCCHHHHHHHHHHHH-Hc-CceEEEEEEEecCCC
Confidence 45789998887777663 56788889986432 5699999999999999998 88 7999999777764
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 74 -DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
+.+....+....+.+++...+ +|++ ...+-+|+
T Consensus 221 ~d~~~y~~Ai~dAr~vfd~g~e-~Gf~--m~~LdiGG 254 (448)
T KOG0622|consen 221 TDLQAYRDAISDARNVFDMGAE-LGFE--MDILDIGG 254 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-cCce--EEEeecCC
Confidence 444456777778888887664 5876 55565543
No 55
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=97.78 E-value=0.00032 Score=57.00 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=46.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~------------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
..++||++++++|.+.+.+ ++.+|.|+||.+. ..+|||++++++.+ . . ++++.||+.
T Consensus 92 ~~~~Ds~~EL~~l~~~~~~---~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~~~---~-~----~~~v~Glh~ 160 (346)
T cd06829 92 HIIFNSLSQLERFKDRAKA---AGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEE---E-D----LDGIEGLHF 160 (346)
T ss_pred EEEECCHHHHHHHHHHHhc---cCCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHhhh---h-h----hcCceEEEE
Confidence 3589999999999999864 3578999999642 36899999876432 1 1 467889988
Q ss_pred ecCC
Q 032392 70 IGMP 73 (142)
Q Consensus 70 h~~~ 73 (142)
|-+.
T Consensus 161 HvGS 164 (346)
T cd06829 161 HTLC 164 (346)
T ss_pred ccCc
Confidence 8764
No 56
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=94.70 E-value=0.16 Score=44.04 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=65.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCC--ceEEEEEe---------CCCCCCccCCChhhHHHHHHHHHccCCCeeEee-Eee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKP--LKVLVQVN---------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG-LMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~--~~v~I~v~---------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~G-l~t 69 (142)
+.+|+-+.+++.+-+.|++.| .+ +.|-+++. +|++-+|||++..++.++++.++ ...-|.--- |+.
T Consensus 190 ~ivIEklsEl~~VleeA~~lg-vkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lr-e~~~Ld~l~llHF 267 (652)
T COG1166 190 YIVIEKLSELDLVLEEAKQLG-VKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATQVLQVVERLR-EANLLDSLQLLHF 267 (652)
T ss_pred EEEEechHHHHHHHHHHHHcC-CCCcceeEEEEecccccccccccCchhccCCCHHHHHHHHHHHH-hcchHHhhHHHhh
Confidence 346777778888888888877 44 44444444 57889999999999999999987 544333222 344
Q ss_pred ecC-C--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 70 IGM-P--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~-~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+ + +-.+....++.-..++-.|.+. |.+ +..+-.|+
T Consensus 268 HlGSQisnI~~ik~~~rEA~r~YvEL~kl-Ga~--i~~~dVGG 307 (652)
T COG1166 268 HLGSQISNIRDIKTGVREAARFYVELRKL-GAN--IKYFDVGG 307 (652)
T ss_pred hhcchhhhhHHHHHHHHHHHHHHHHHHHc-CCC--ceEEeccC
Confidence 444 3 2222334555555555667765 876 67775543
No 57
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.77 E-value=3.7 Score=31.82 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=45.1
Q ss_pred EeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCe-EEecCchh-HHHHHHcCCcEEecCccccCCCc
Q 032392 64 FSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCE-LSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 64 l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~-lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
..=+||.-+- .-+. ....++++.++.+.+++. |.+ +.. +=.|.+.. +....+.|.|.+=.|+++|+...
T Consensus 143 ~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~-~~~--~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 143 LIQILTLDPRTGTKAPSDLILDRVIQVENRLGNR-RVE--KLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc-CCC--ceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 3347887653 2223 357899999988887765 654 222 33344433 33457899999999999998543
No 58
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=91.99 E-value=3.5 Score=33.39 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeE-eeecCCCCCC------
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGL-MTIGMPDYTS------ 77 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl-~th~~~~~~~------ 77 (142)
+.+.+..|-+.+++. .++||++++-. +.+++.++++.+. +. .+|.+..- ..-..-+...
T Consensus 145 ~~e~l~~l~~~vk~~--~~~Pv~vKl~P---------~~~di~~iA~~~~-~~g~Dgl~~~NT~~~~~~id~~~~~~~~~ 212 (310)
T COG0167 145 DPELLEKLLEAVKAA--TKVPVFVKLAP---------NITDIDEIAKAAE-EAGADGLIAINTTKSGMKIDLETKKPVLA 212 (310)
T ss_pred CHHHHHHHHHHHHhc--ccCceEEEeCC---------CHHHHHHHHHHHH-HcCCcEEEEEeeccccccccccccccccC
Confidence 556666666666664 45888777644 4577888888776 43 45655542 2111011111
Q ss_pred -----------cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHH---HHcCCcEEecCccccCCCcc
Q 032392 78 -----------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 78 -----------~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a---~~~g~t~VR~G~~ifg~~~~ 136 (142)
.....+.+.++++ +.+.+ ++.+.+|+-.++..| +.+|.++|++||++|..-|.
T Consensus 213 ~~~GGLSG~~ikp~al~~v~~l~~----~~~~~--ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~ 279 (310)
T COG0167 213 NETGGLSGPPLKPIALRVVAELYK----RLGGD--IPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPG 279 (310)
T ss_pred cCCCCcCcccchHHHHHHHHHHHH----hcCCC--CcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCch
Confidence 1234444444433 33434 788888877777754 57899999999999987654
No 59
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=89.17 E-value=6.7 Score=30.27 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=48.8
Q ss_pred eeEeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh-HHHHHHcCCcEEecCccccCCCccc
Q 032392 62 LEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 62 l~l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
+.+.=+||.-+- .-+. ....+++++++.+.+.++ + +. .-++=.|.+.. .....+.|.|.+=.|+++|+...|.
T Consensus 132 vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~-~-~~-~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~ 207 (220)
T COG0036 132 VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER-L-DI-LIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYK 207 (220)
T ss_pred CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc-C-Ce-EEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHH
Confidence 445558997653 3333 358899999998888764 4 31 23345455533 3345678999999999999987654
No 60
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=87.70 E-value=5 Score=29.31 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=34.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEe
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
.++..+.+..+=+.+.+.+ .+|.+ +|-.++.+..+.+.++..+|++++.|.+
T Consensus 28 r~~g~dl~~~ll~~~~~~~---~~v~l----------lG~~~~~~~~~~~~l~~~yp~l~i~g~~ 79 (171)
T cd06533 28 RVTGSDLMPALLELAAQKG---LRVFL----------LGAKPEVLEKAAERLRARYPGLKIVGYH 79 (171)
T ss_pred ccCcHHHHHHHHHHHHHcC---CeEEE----------ECCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 4556666666666665543 44544 3446677788888885489999999953
No 61
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.03 E-value=9 Score=30.51 Aligned_cols=117 Identities=14% Similarity=0.190 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcH------HHHHHH
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP------ENFRTL 85 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~------~~~~~~ 85 (142)
+.+.++.+..| ..++|.++++.... ...|.++++..++++.+. +.. +. .|..+......... ......
T Consensus 196 eii~avr~~~g-~d~~i~vris~~~~-~~~g~~~~e~~~la~~l~-~~G-~d--~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 196 EIVAAVREAVG-PDFPVGVRLSADDF-VPGGLTLEEAIEIAKALE-EAG-VD--ALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHcC-CCceEEEEechhcc-CCCCCCHHHHHHHHHHHH-HcC-CC--EEEeCCCCCcccccccCCCCCCcchh
Confidence 34445554455 56788888887632 235688889999999887 543 32 23222221111000 000112
Q ss_pred HHHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHc-CCcEEecCccccCCCcccc
Q 032392 86 LNCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEM-GSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 86 ~~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~-g~t~VR~G~~ifg~~~~~~ 138 (142)
......+++..+ ++.+..|+-.+ +..+++. +.+.|-+|+.++.+-...+
T Consensus 270 ~~~~~~ir~~~~----iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 270 LELAEKIKKAVK----IPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred HHHHHHHHHHCC----CCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 234444555432 45565555433 3334666 7899999999988755443
No 62
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=86.25 E-value=7.7 Score=30.24 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCccCCChhhHHHHHHHHHc-cCC-CeeEeeEeeecCCCCCCcHHHHHHH
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCLGIVEHVRL-RCP-NLEFSGLMTIGMPDYTSTPENFRTL 85 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~t-g~~~~R~G~~~~~~~~l~~~i~~-~~~-~l~l~Gl~th~~~~~~~~~~~~~~~ 85 (142)
+.++.|.+...+.+.....=-++||. |+-.--|+-+++.+.+.+..+.+ ..| .|+++|=| |......|.+.+
T Consensus 51 eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~L~iEgP~-----d~g~r~~QI~~l 125 (248)
T PF07476_consen 51 EYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFKLRIEGPM-----DAGSREAQIEAL 125 (248)
T ss_dssp HHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS-EEEE-SB-------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCeeeeeCCc-----CCCChHHHHHHH
Confidence 44556666555544222333345553 21113455567777777766631 233 48888866 444567999999
Q ss_pred HHHHHHHHHHhCCCCCCCeE---EecCchhHHHHHHcCC-cEEecCcc
Q 032392 86 LNCRAEVCKALGMAEDQCEL---SMGMSGDFEQAIEMGS-TSVRIGST 129 (142)
Q Consensus 86 ~~~~~~l~~~~g~~~~~~~l---S~G~s~~~~~a~~~g~-t~VR~G~~ 129 (142)
.++.+.|+++ |++ ...+ =+-...|.....+.+. +||++=|-
T Consensus 126 ~~Lr~~L~~~-g~~--v~iVADEWCNT~eDI~~F~da~A~dmVQIKtP 170 (248)
T PF07476_consen 126 AELREELDRR-GIN--VEIVADEWCNTLEDIREFADAKAADMVQIKTP 170 (248)
T ss_dssp HHHHHHHHHC-T----EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GG
T ss_pred HHHHHHHHhc-CCC--CeEEeehhcCCHHHHHHHHhcCCcCEEEecCC
Confidence 9999999987 876 3444 1223355555555554 89987553
No 63
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.26 E-value=15 Score=28.24 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=45.3
Q ss_pred eeEeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCC-eEEecCchh-HHHHHHcCCcEEecCccccCCCc
Q 032392 62 LEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 62 l~l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~-~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
+...=+||.-+- .-+. ....++++.++.+.+.+. +.+ +. .+-.|.+.+ .....+.|.+.+=.|++||+...
T Consensus 133 vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~-~~~--~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 133 LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDAL-GKP--IRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc-CCC--eeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 334447887653 2223 357888888888877664 543 22 234455533 33456889999999999998544
No 64
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.23 E-value=6.6 Score=29.08 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHH
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~ 85 (142)
...+.+..+-+.+.+.+ .+|.+ +|-.++.+..+.+.++..+|++++.|. |+..+. . + -
T Consensus 32 ~G~dl~~~l~~~~~~~~---~~vfl----------lG~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~--~--~---~ 89 (177)
T TIGR00696 32 AGPDLMEELCQRAGKEK---LPIFL----------YGGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEP--E--E---R 89 (177)
T ss_pred ChHHHHHHHHHHHHHcC---CeEEE----------ECCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCh--H--H---H
Confidence 34556666666665544 45544 344667778888888548899999996 443221 1 1 1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEecC
Q 032392 86 LNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 86 ~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.++++.+++. +.+ +..+.||+
T Consensus 90 ~~i~~~I~~s-~~d--il~VglG~ 110 (177)
T TIGR00696 90 KAALAKIARS-GAG--IVFVGLGC 110 (177)
T ss_pred HHHHHHHHHc-CCC--EEEEEcCC
Confidence 2356666665 644 44445543
No 65
>PRK14057 epimerase; Provisional
Probab=84.38 E-value=18 Score=28.48 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=45.8
Q ss_pred EeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCC-eEEecCchh-HHHHHHcCCcEEecCccccCCCc
Q 032392 64 FSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 64 l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~-~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
..=+||.-+- .-+. ....++++.++.+.+.+. |.+ +. .+=.|.+.. .....+.|.|.+=.|+++|+...
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~-~~~--~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDK-REG--KIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhc-CCC--ceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 3337887653 2233 458899999988887765 654 22 234455533 33457899999999999998544
No 66
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=83.63 E-value=18 Score=27.73 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=44.5
Q ss_pred CeeEeeEeeecCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh-HHHHHHcCCcEEecCccccCCCccc
Q 032392 61 NLEFSGLMTIGMP-DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 61 ~l~l~Gl~th~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
.+.+.=+||.-+- .-+.+ .+.+..-+++|+++|+ +. .-.+-.|-++. ...+.++|.+++=.||++|+-..+.
T Consensus 134 ~~D~vLvMtVePGFGGQkF---me~mm~KV~~lR~kyp-~l-~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~ 207 (224)
T KOG3111|consen 134 HVDMVLVMTVEPGFGGQKF---MEDMMPKVEWLREKYP-NL-DIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPS 207 (224)
T ss_pred cccEEEEEEecCCCchhhh---HHHHHHHHHHHHHhCC-Cc-eEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHH
Confidence 4556668997653 22222 2334455566777753 21 12355565544 3346788999999999999987664
No 67
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=83.34 E-value=13 Score=30.07 Aligned_cols=118 Identities=10% Similarity=0.185 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCC--CCcHHHHHHHHHHH
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDY--TSTPENFRTLLNCR 89 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~--~~~~~~~~~~~~~~ 89 (142)
+.+..+.+..| ...+|.|+++... ....|.+++++.++++.+. +.. +.+.-+........ .+....+ ...+.
T Consensus 209 eiv~aIR~~vG-~d~~v~vri~~~~-~~~~g~~~~e~~~ia~~Le-~~g-vd~iev~~g~~~~~~~~~~~~~~--~~~~~ 282 (336)
T cd02932 209 EVVDAVRAVWP-EDKPLFVRISATD-WVEGGWDLEDSVELAKALK-ELG-VDLIDVSSGGNSPAQKIPVGPGY--QVPFA 282 (336)
T ss_pred HHHHHHHHHcC-CCceEEEEEcccc-cCCCCCCHHHHHHHHHHHH-HcC-CCEEEECCCCCCcccccCCCccc--cHHHH
Confidence 34444444555 5678888888643 2345788888899998887 542 33322211100000 0110000 12344
Q ss_pred HHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCccccc
Q 032392 90 AEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAKK 139 (142)
Q Consensus 90 ~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~~ 139 (142)
..+++.. + ++.+..|.-.+ +..+++.| .|.|..|+.++.+-...++
T Consensus 283 ~~ir~~~--~--iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 283 ERIRQEA--G--IPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHHHhhC--C--CCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 4556542 3 46666665433 33456777 7999999999988655443
No 68
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.06 E-value=22 Score=28.75 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC---CC-----C-CcHHHH
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DY-----T-STPENF 82 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~---~~-----~-~~~~~~ 82 (142)
+.+.++.+..| ..++|.++++.. +..+.|+++++..++++.+. +.. +.+ |..|... .. . .....-
T Consensus 204 EiI~aIR~avG-~d~~v~vris~~-~~~~~g~~~eea~~ia~~Le-~~G-vd~--iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 204 EIYDAIRAAVG-PGFPVGIKLNSA-DFQRGGFTEEDALEVVEALE-EAG-VDL--VELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHcC-CCCeEEEEEcHH-HcCCCCCCHHHHHHHHHHHH-HcC-CCE--EEecCCCCCCccccccccCCccccc
Confidence 34444544456 568898899863 24577899999999999887 542 322 1112221 00 0 000000
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcccccc
Q 032392 83 RTLLNCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAKKQ 140 (142)
Q Consensus 83 ~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~~~ 140 (142)
-.+..+...+++..+ ++.+..|.-.+ ...+++.| .|+|-.|..+..+-...++.
T Consensus 278 ~~~~~~~~~ik~~v~----iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~ 335 (338)
T cd04733 278 AYFLEFAEKIRKVTK----TPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKL 335 (338)
T ss_pred hhhHHHHHHHHHHcC----CCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHH
Confidence 012345556666533 45555454433 33456666 69999999999887766544
No 69
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=82.06 E-value=10 Score=30.88 Aligned_cols=117 Identities=8% Similarity=0.104 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeEeeecC-C-CCCC-cHHHHHHHH
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGM-P-DYTS-TPENFRTLL 86 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~-~-~~~~-~~~~~~~~~ 86 (142)
+.+..+.+..| ..+.|.|+++... ...-|.++++..++++.+. +. ..|.+.+-+ |.. . .... ... ..+.
T Consensus 192 eiv~aIR~~vG-~d~~v~iRi~~~D-~~~~g~~~~e~~~i~~~Le-~~G~d~i~vs~g~-~e~~~~~~~~~~~~--~~~~ 265 (353)
T cd02930 192 EIVRAVRAAVG-EDFIIIYRLSMLD-LVEGGSTWEEVVALAKALE-AAGADILNTGIGW-HEARVPTIATSVPR--GAFA 265 (353)
T ss_pred HHHHHHHHHcC-CCceEEEEecccc-cCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCc-CCCCCccccccCCc--hhhH
Confidence 34555555566 6788888888532 3456788899999999886 53 344442111 211 1 0000 001 0123
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcccc
Q 032392 87 NCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
.+...+++.. + .+.+..|.-.+ +..+++.| .|+|..|..+..+-...+
T Consensus 266 ~~~~~ik~~v--~--iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 266 WATAKLKRAV--D--IPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVA 317 (353)
T ss_pred HHHHHHHHhC--C--CCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHH
Confidence 3455566653 2 46666665433 33456665 799999999988765543
No 70
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=81.61 E-value=25 Score=28.64 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCC---CeeEeeEeeecC----CCCCC--cHHHHH
Q 032392 13 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP---NLEFSGLMTIGM----PDYTS--TPENFR 83 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~---~l~l~Gl~th~~----~~~~~--~~~~~~ 83 (142)
.+..+.+..| ..+.|.++++.... ..-|.++++..++++.+. +.. .|.+.+=..... +.... ....+
T Consensus 197 iv~~ir~~vg-~~~~v~iRl~~~~~-~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~- 272 (343)
T cd04734 197 VLAAVRAAVG-PDFIVGIRISGDED-TEGGLSPDEALEIAARLA-AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGP- 272 (343)
T ss_pred HHHHHHHHcC-CCCeEEEEeehhhc-cCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCCCCCcccccccccCCCCCCcch-
Confidence 3444445556 67888888886532 356889999999999987 553 344321111100 00000 01111
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcccc
Q 032392 84 TLLNCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
+.++...+++..+ ++.+..|.-.+ ...+++.+ .++|-+|..+..+-...+
T Consensus 273 -~~~~~~~ik~~~~----ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 273 -FLPLAARIKQAVD----LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred -hHHHHHHHHHHcC----CCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHH
Confidence 2344455555432 45565564333 33345655 799999999988765543
No 71
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=81.08 E-value=22 Score=27.14 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=42.2
Q ss_pred EeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeE-EecCchh-HHHHHHcCCcEEecCccccCCCc
Q 032392 67 LMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 67 l~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
+||.-+- .-+. ....++++.++.+.+.+. |.+ ++.. -.|.+.. .....+.|.+.+=+|++||+...
T Consensus 134 vMtV~PGfgGq~fi~~~lekI~~l~~~~~~~-~~~--~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 134 LMSVNPGFGGQSFIPHTLDKLRAVRKMIDES-GRD--IRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred EEEecCCCCCceecHhHHHHHHHHHHHHHhc-CCC--eeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 5776553 2222 346777888887776654 654 3443 3345533 33446889999999999998544
No 72
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=80.17 E-value=11 Score=27.61 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=41.2
Q ss_pred eEEEEEeCCCCCCccCCCh--hhHHHHHHHHHccCCCeeEeeEee-ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCC
Q 032392 27 KVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTSTPENFRTLLNCRAEVCKALGMAED 101 (142)
Q Consensus 27 ~v~I~v~tg~~~~R~G~~~--~~~~~l~~~i~~~~~~l~l~Gl~t-h~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 101 (142)
+|++-|||. +|+|+.| +.+..|.+..+ ..++.+.|+=+ -|...+....++...|.+ ..||.++|
T Consensus 26 kVlLIVNtA---SkCGfTpQYegLe~Ly~ky~--~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~------~~YgVtFp 92 (162)
T COG0386 26 KVLLIVNTA---SKCGFTPQYEGLEALYKKYK--DKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ------LNYGVTFP 92 (162)
T ss_pred cEEEEEEcc---cccCCcHhHHHHHHHHHHHh--hCCcEEEeccccccccCCCCCHHHHHHHHH------hccCceee
Confidence 678889999 8999988 67788888775 45799888743 333212222344444433 34788754
No 73
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=80.04 E-value=16 Score=30.06 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCcc-CCChhhHHHHHHHHHccC-CCeeEeeEeeecCCCCCC--cHHHHHHHHH
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKS-GIDPSSCLGIVEHVRLRC-PNLEFSGLMTIGMPDYTS--TPENFRTLLN 87 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~-G~~~~~~~~l~~~i~~~~-~~l~l~Gl~th~~~~~~~--~~~~~~~~~~ 87 (142)
+.+..+.+..| ..+.|.|+++........ |.++++..++++.+. +. .-+.+.+=+ +....... ....+ ...
T Consensus 205 eii~aIr~~vg-~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~-~~~D~i~vs~g~-~~~~~~~~~~~~~~~--~~~ 279 (370)
T cd02929 205 ETLEDTKDAVG-DDCAVATRFSVDELIGPGGIESEGEGVEFVEMLD-ELPDLWDVNVGD-WANDGEDSRFYPEGH--QEP 279 (370)
T ss_pred HHHHHHHHHcC-CCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHH-hhCCEEEecCCC-ccccccccccCCccc--cHH
Confidence 33455555556 678888898864323333 357788888888886 43 112221100 10000000 01111 234
Q ss_pred HHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcccc
Q 032392 88 CRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
+.+.+++..+ .+.+..|.-.+ ...+++.| .|.|-.|..+..+-...+
T Consensus 280 ~~~~ik~~~~----~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 330 (370)
T cd02929 280 YIKFVKQVTS----KPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPK 330 (370)
T ss_pred HHHHHHHHCC----CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHH
Confidence 5555666533 45665565433 33346666 799999999998865544
No 74
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=79.54 E-value=21 Score=29.87 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHH---HHHcCCcEEecCccccCCCc
Q 032392 80 ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ---AIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~---a~~~g~t~VR~G~~ifg~~~ 135 (142)
.+.+.+.++++.+...++.+ ++.+.+|+=.++.- .+..|.+.|+++|++|.+.+
T Consensus 251 iAl~~v~~i~~~~~~~~~~~--ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp 307 (385)
T PLN02495 251 IALAKVMAIAKMMKSEFPED--RSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGY 307 (385)
T ss_pred HHHHHHHHHHHHHhhhccCC--CcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCc
Confidence 45555666667665433322 56777775555554 36789999999999987633
No 75
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=78.77 E-value=14 Score=27.89 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=44.7
Q ss_pred CCeeEeeEeeecCC-CCCCc-HHHHHHHHHHHHHHHHHhCCCCCCCeE-EecCch-hHHHHHHcCCcEEecCccccCC
Q 032392 60 PNLEFSGLMTIGMP-DYTST-PENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSG-DFEQAIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 60 ~~l~l~Gl~th~~~-~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~-~~~~a~~~g~t~VR~G~~ifg~ 133 (142)
+.+...=+||..+- .-+.+ ...++++.++.+.+.+. |.. +... =.|.+. ......+.|.+.+=.|+++|+.
T Consensus 126 ~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~-~~~--~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 126 DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPEN-GLD--FEIEVDGGINEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHH-TCG--SEEEEESSESTTTHHHHHHHT--EEEESHHHHTS
T ss_pred hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhc-CCc--eEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 45667778887653 22233 47899999999888776 654 3322 334443 3444578899999999999974
No 76
>PRK08005 epimerase; Validated
Probab=76.77 E-value=31 Score=26.32 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred EeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh-HHHHHHcCCcEEecCccccCCCcc
Q 032392 64 FSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 64 l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
..=+||.-+- .-+. ....++++.++.+.+.+. . -.+=.|.+.. .....+.|.|.+=.|++||+...+
T Consensus 131 ~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~---~---I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~ 200 (210)
T PRK08005 131 ALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA---E---CWADGGITLRAARLLAAAGAQHLVIGRALFTTANY 200 (210)
T ss_pred EEEEEEecCCCccceecHHHHHHHHHHHHhcccC---C---EEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCH
Confidence 3337887653 2233 347788887766544321 1 2344455533 334578999999999999985443
No 77
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=76.44 E-value=43 Score=27.75 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC---CCeeEeeEeeecCCCCCCcHHHHHHHHHHHH
Q 032392 14 LDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC---PNLEFSGLMTIGMPDYTSTPENFRTLLNCRA 90 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~---~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~ 90 (142)
+....+.-+ ...+|.++++...-....|.++++..++++.+. +. ..|.+.+-..+..... .... ...+..+..
T Consensus 206 v~aVr~~vg-~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~-~~G~~d~i~vs~~~~~~~~~~-~~~~-~~~~~~~a~ 281 (363)
T COG1902 206 VDAVREAVG-ADFPVGVRLSPDDFFDGGGLTIEEAVELAKALE-EAGLVDYIHVSEGGYERGGTI-TVSG-PGYQVEFAA 281 (363)
T ss_pred HHHHHHHhC-CCceEEEEECccccCCCCCCCHHHHHHHHHHHH-hcCCccEEEeecccccCCCCc-cccc-cchhHHHHH
Confidence 333444445 566788999976433556899999999999997 54 3333333222211100 0000 222334444
Q ss_pred HHHHHhCCCCCCCeEEecC--chhHHH-HHHcC-CcEEecCccccCCCccc
Q 032392 91 EVCKALGMAEDQCELSMGM--SGDFEQ-AIEMG-STSVRIGSTIFGPREYA 137 (142)
Q Consensus 91 ~l~~~~g~~~~~~~lS~G~--s~~~~~-a~~~g-~t~VR~G~~ifg~~~~~ 137 (142)
.++...+ .+.+..|+ +++... .++.| .|+|-.|..+.-+-...
T Consensus 282 ~i~~~~~----~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~ 328 (363)
T COG1902 282 RIKKAVR----IPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLV 328 (363)
T ss_pred HHHHhcC----CCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHH
Confidence 4554423 35666664 444433 35666 89999999887665443
No 78
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=75.08 E-value=35 Score=27.75 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=52.3
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeEee-ecCC--C-----CCCc--HHHHHHHHHHHHHHH
Q 032392 26 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMT-IGMP--D-----YTST--PENFRTLLNCRAEVC 93 (142)
Q Consensus 26 ~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~t-h~~~--~-----~~~~--~~~~~~~~~~~~~l~ 93 (142)
++|.+++..+ ++.+++.++++.+. +. .+|.+.+=.. .... . .... ...+..-.+.+..++
T Consensus 212 ~PV~vKlsp~-------~~~~~~~~ia~~l~-~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~ 283 (344)
T PRK05286 212 VPLLVKIAPD-------LSDEELDDIADLAL-EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY 283 (344)
T ss_pred CceEEEeCCC-------CCHHHHHHHHHHHH-HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 7888887644 44566778888775 43 3444433110 0000 0 0000 122222333455555
Q ss_pred HHhCCCCCCCeEEecCchhHHH---HHHcCCcEEecCccccCC
Q 032392 94 KALGMAEDQCELSMGMSGDFEQ---AIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 94 ~~~g~~~~~~~lS~G~s~~~~~---a~~~g~t~VR~G~~ifg~ 133 (142)
+..+.+ ++.+..|+-.+... ....|.+.|.+|+.++..
T Consensus 284 ~~~~~~--ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~ 324 (344)
T PRK05286 284 KELGGR--LPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE 324 (344)
T ss_pred HHhCCC--CCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 543222 56776665555443 357899999999998754
No 79
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.20 E-value=30 Score=25.18 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 5 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 5 vds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
|+..+.+..+-+.+.+.+ .+|++ +|-+++.+.++.+.++..+|++++.|.++
T Consensus 31 v~g~dl~~~l~~~~~~~~---~~ifl----------lG~~~~~~~~~~~~l~~~yP~l~ivg~~~ 82 (172)
T PF03808_consen 31 VTGSDLFPDLLRRAEQRG---KRIFL----------LGGSEEVLEKAAANLRRRYPGLRIVGYHH 82 (172)
T ss_pred cCHHHHHHHHHHHHHHcC---CeEEE----------EeCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 444555555555555543 34433 34466777888888865899999999865
No 80
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=74.01 E-value=7.8 Score=31.91 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.5
Q ss_pred ccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 40 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 40 R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
|+=++..+..++++... ..|.+++..||-|.+-
T Consensus 136 RcEvs~~~~l~~~e~~~-~~p~v~LiSlMDH~PG 168 (377)
T COG3454 136 RCEVSHPATLPLFEDLM-DHPRVKLISLMDHTPG 168 (377)
T ss_pred eeecCChhHHHHHHHHh-cCCCeeEEEecCCCCC
Confidence 34455567788888888 9999999999999863
No 81
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=71.97 E-value=22 Score=29.52 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=57.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC---CCCCccCCChhhHHHHHHHHHccCCCeeEeeEee---ecCC-C
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS---GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT---IGMP-D 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg---~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t---h~~~-~ 74 (142)
|.||+|..-+-.=+.+...+. ..-+|+|+-.+. ...+=+|+.|.++..++..+.+++ ++-.+-|+- |.+. -
T Consensus 19 I~SVCSAHPlViEAAl~~a~~-~~~~vLIEAT~NQVnq~GGYTGMTP~DFr~fV~aiA~~~-gfp~e~liLGGDHLGPN~ 96 (426)
T COG4573 19 IYSVCSAHPLVIEAALRFARA-SQTPVLIEATSNQVNQFGGYTGMTPADFRGFVFAIADKL-GFPRERLILGGDHLGPNP 96 (426)
T ss_pred ceeeccccHHHHHHHHHHHhc-cCCceEeecccccccccCCcCCCChHHHHHHHHHHHHHh-CCcHHHHhccCCcCCCCc
Confidence 456666544322222222222 346788875432 112456799999999998885232 232222321 3332 2
Q ss_pred C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeE--EecCch
Q 032392 75 Y--TSTPENFRTLLNCRAEVCKALGMAEDQCEL--SMGMSG 111 (142)
Q Consensus 75 ~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l--S~G~s~ 111 (142)
+ .+..+...+-.++++..-+. |++ .-|| |||-.+
T Consensus 97 Wq~~pA~eAM~ka~~mv~AYv~A-GF~--KIHLDaSM~CA~ 134 (426)
T COG4573 97 WQHLPAAEAMAKADDLVKAYVAA-GFT--KIHLDASMSCAG 134 (426)
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-Cce--eeecccccccCC
Confidence 2 23346777777777777666 887 4566 665443
No 82
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=71.58 E-value=52 Score=27.20 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCC-------------CCCCccCCChhhHHHHHHHHHccC--CCeeEeeEe-eecCCCC
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTS-------------GEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLM-TIGMPDY 75 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg-------------~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~-th~~~~~ 75 (142)
+.+.++.+..+ ..++|.++++.. .+....|.++++..++++.+. +. ..|.+.|=. .......
T Consensus 206 eii~~vr~~~g-~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~-~~gvD~l~vs~g~~~~~~~~~ 283 (382)
T cd02931 206 EIVEEIKARCG-EDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE-EAGYDALDVDAGSYDAWYWNH 283 (382)
T ss_pred HHHHHHHHhcC-CCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH-HhCCCEEEeCCCCCccccccc
Confidence 33444555555 567888888841 112245888999999999886 44 344443211 0000000
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcccc
Q 032392 76 TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
......-..+..+.+.+++..+ ++.+-.|.-.+ ...+++.| .|+|-.|..+..+-...+
T Consensus 284 ~~~~~~~~~~~~~~~~ik~~~~----~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 346 (382)
T cd02931 284 PPMYQKKGMYLPYCKALKEVVD----VPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred CCccCCcchhHHHHHHHHHHCC----CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHH
Confidence 0000000012334455665433 34554454433 33346665 699999999988866544
No 83
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.21 E-value=53 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCeEEecCchhHHH---HHHcCCcEEecCccccCC
Q 032392 102 QCELSMGMSGDFEQ---AIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 102 ~~~lS~G~s~~~~~---a~~~g~t~VR~G~~ifg~ 133 (142)
++.+..|+-.++.- ....|.+.|.+||.++..
T Consensus 244 ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~ 278 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKE 278 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhc
Confidence 57787775555443 457899999999998863
No 84
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=69.53 E-value=65 Score=26.80 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=59.6
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHH
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR 83 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~ 83 (142)
.||=..+++.+++.+.-.| +-+..|| |- ++--+. ..-+.++++.++ ..+++.+..+.|++..-
T Consensus 140 ~Vd~eyLl~w~~kVa~~Kg-kglEaHl--DG---qGEP~l-YP~l~~lVqalk-~~~~v~vVSmQTng~~L--------- 202 (414)
T COG2100 140 VVDPEYLLEWFEKVARFKG-KGLEAHL--DG---QGEPLL-YPHLVDLVQALK-EHKGVEVVSMQTNGVLL--------- 202 (414)
T ss_pred EecHHHHHHHHHHHHhhhC-CCeEEEe--cC---CCCCcc-chhHHHHHHHHh-cCCCceEEEEeeCceec---------
Confidence 4666778889999998777 6677754 32 222333 246788999999 99999999999998641
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032392 84 TLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
-.+++++|+++ |++ --.||.-+.
T Consensus 203 -~~~lv~eLeeA-GLd--RiNlSv~aL 225 (414)
T COG2100 203 -SKKLVDELEEA-GLD--RINLSVDAL 225 (414)
T ss_pred -cHHHHHHHHHh-CCc--eEEeecccC
Confidence 13466677765 876 445676433
No 85
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=68.77 E-value=60 Score=26.14 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchhHHH---HHHcCCcEEecCccccCCCc
Q 032392 87 NCRAEVCKALGMAEDQCELSMGMSGDFEQ---AIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~~~~---a~~~g~t~VR~G~~ifg~~~ 135 (142)
+.+..+++..+.+ ++.+..|+-.+... ....|.+.|.+|+.++...|
T Consensus 268 ~~v~~l~~~~~~~--ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP 317 (327)
T cd04738 268 EVLRELYKLTGGK--IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGP 317 (327)
T ss_pred HHHHHHHHHhCCC--CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCc
Confidence 3444455543323 56777776555443 35789999999999875533
No 86
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.46 E-value=70 Score=26.39 Aligned_cols=113 Identities=13% Similarity=0.185 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCCceEEEEEeCC--CC-CCccCCChhhHHHHHHHHHccC--CCeeEeeEeeecCCCCCCcHHHHHHHHH
Q 032392 13 HLDKAVSNLGRKPLKVLVQVNTS--GE-ESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFRTLLN 87 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg--~~-~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~ 87 (142)
.+..+.+..| ...+|.|+++.. .+ ..+.|.++++...+++.+. +. ..|++.+=..+ ...+... ...
T Consensus 200 ii~air~~vG-~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~-~~gvd~i~vs~g~~~-~~~~~~~------~~~ 270 (361)
T cd04747 200 VVKAIRAAVG-PDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV-DAGVDIFHCSTRRFW-EPEFEGS------ELN 270 (361)
T ss_pred HHHHHHHHcC-CCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCcc-CCCcCcc------chh
Confidence 3444444456 678898899842 11 1245788888888888886 43 22322211000 1111111 122
Q ss_pred HHHHHHHHhCCCCCCCeEEecC--------------------chhHH-HHHHcC-CcEEecCccccCCCcccc
Q 032392 88 CRAEVCKALGMAEDQCELSMGM--------------------SGDFE-QAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~lS~G~--------------------s~~~~-~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
+.+.+++..+ ++.+..|+ |+... .+++.| .|+|-.|..+..+-...+
T Consensus 271 ~~~~~k~~~~----~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~ 339 (361)
T cd04747 271 LAGWTKKLTG----LPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVA 339 (361)
T ss_pred HHHHHHHHcC----CCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHH
Confidence 3344555422 45565554 33322 345655 799999999988765544
No 87
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.40 E-value=40 Score=27.44 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=55.6
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCCCC
Q 032392 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS-TPENFRTLLNCRAEVCKALGMAEDQC 103 (142)
Q Consensus 25 ~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~ 103 (142)
.+.|-++++.... -.-|.++++..++++.+. +.. +.+..+.......... .... .....+.+++....+ ++
T Consensus 215 ~~~v~~R~s~~~~-~~~g~~~ee~~~i~~~L~-~~G-vD~I~Vs~g~~~~~~~~~~~~---~~~~~~~ik~~~~~~--iP 286 (353)
T cd04735 215 DFILGYRFSPEEP-EEPGIRMEDTLALVDKLA-DKG-LDYLHISLWDFDRKSRRGRDD---NQTIMELVKERIAGR--LP 286 (353)
T ss_pred CceEEEEECcccc-cCCCCCHHHHHHHHHHHH-HcC-CCEEEeccCccccccccCCcc---hHHHHHHHHHHhCCC--CC
Confidence 5678888886532 245888899999999887 542 3333332111101000 0000 122233344332212 45
Q ss_pred eEEecC--chh-HHHHHHcCCcEEecCccccCCCccc
Q 032392 104 ELSMGM--SGD-FEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 104 ~lS~G~--s~~-~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
.+..|. |+. ...+++.|.+.|-.|..+..+-...
T Consensus 287 Vi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~ 323 (353)
T cd04735 287 LIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWV 323 (353)
T ss_pred EEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHH
Confidence 565554 333 2234566899999999998874433
No 88
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=61.92 E-value=72 Score=24.64 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=43.2
Q ss_pred EeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCC-eEEecCchh-HHHHHHcCCcEEecCcc-ccCC
Q 032392 64 FSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGD-FEQAIEMGSTSVRIGST-IFGP 133 (142)
Q Consensus 64 l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~-~lS~G~s~~-~~~a~~~g~t~VR~G~~-ifg~ 133 (142)
..=+||.-+- .-+. ....++++.++.+.+.+. |.+ +. .+=.|.+.. .....+.|.|.+=.|++ ||+.
T Consensus 133 ~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~-~~~--~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 133 KITVMTVDPGFAGQPFIPEMLDKIAELKALRERN-GLE--YLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred EEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhc-CCC--eEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCC
Confidence 3337887653 2233 358899999988877664 654 22 234455533 33456889999999965 9984
No 89
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=61.83 E-value=48 Score=26.28 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHccCCCeeEeeE-ee-ecCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeE---EecCchhHHHHH
Q 032392 44 DPSSCLGIVEHVRLRCPNLEFSGL-MT-IGMP-DYTSTPENFRTLLNCRAEVCKALGMAEDQCEL---SMGMSGDFEQAI 117 (142)
Q Consensus 44 ~~~~~~~l~~~i~~~~~~l~l~Gl-~t-h~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l---S~G~s~~~~~a~ 117 (142)
+..+..+++..+. ..-|.++.++ ++ ++.. ....+...++.+..+.+.|++.+| +.....| |+|..++...|.
T Consensus 72 Dlgq~~~~~~~l~-~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Las 149 (258)
T KOG1552|consen 72 DLGQMVELFKELS-IFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLAS 149 (258)
T ss_pred chHHHHHHHHHHh-hcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhh
Confidence 3346677777776 5557776666 44 2222 212234677778889999999987 3222333 999988776665
Q ss_pred Hc
Q 032392 118 EM 119 (142)
Q Consensus 118 ~~ 119 (142)
+.
T Consensus 150 r~ 151 (258)
T KOG1552|consen 150 RY 151 (258)
T ss_pred cC
Confidence 43
No 90
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=60.39 E-value=88 Score=27.46 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=32.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC--hhhHHHHHHHHHccCC
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID--PSSCLGIVEHVRLRCP 60 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~--~~~~~~l~~~i~~~~~ 60 (142)
.|...+.+..|.++.++.| .+.+|||+-| .+|.+ .+...+.++.++ ..+
T Consensus 204 ~vtp~~ii~~l~~~~~~lg-~ph~iH~h~n------nlg~pgn~~~t~~t~~~~~-~~~ 254 (541)
T cd01304 204 DITPREILKGLAEANEELG-LPHSIHVHCN------NLGVPGNYETTLETMKAAE-GVK 254 (541)
T ss_pred CCCHHHHHHHHHHHHHhcC-CceEEEEccc------cCCCCCcHHHHHHHHHHhh-cCC
Confidence 3667788999999999998 7888887744 34432 344455555554 443
No 91
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=60.25 E-value=13 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~ 56 (142)
+.+++..|++++.+.+ . -.|++-+....-=.|++.+++.++++.+.
T Consensus 22 ~~~~l~~la~ia~~yg-~---~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYG-D---GEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHS-T---SEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-C---CeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 4566667777776654 1 23355444333334456666666666654
No 92
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=59.41 E-value=37 Score=28.05 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCceEEEEEeCCCCCCccCCChhhHHHHHHHHHc-cCCCeeEeeEee-ecCC---C--CCC---------cHHHHHHHHH
Q 032392 24 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL-RCPNLEFSGLMT-IGMP---D--YTS---------TPENFRTLLN 87 (142)
Q Consensus 24 ~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~-~~~~l~l~Gl~t-h~~~---~--~~~---------~~~~~~~~~~ 87 (142)
++.+|++++..+ . ..+++.++..-+++ ...++.+.+... -+.. . .++ .....+.+++
T Consensus 251 ~~~pvl~kiapD--L-----~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~ 323 (398)
T KOG1436|consen 251 KKPPVLVKIAPD--L-----SEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRA 323 (398)
T ss_pred CCCceEEEeccc--h-----hHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHH
Confidence 466899888877 2 33566666665540 344666666533 2111 0 011 1234444444
Q ss_pred HHHHHHHHhCCCCCCCeEEecC-chhHHH--HHHcCCcEEecCccccCCCc
Q 032392 88 CRAEVCKALGMAEDQCELSMGM-SGDFEQ--AIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~lS~G~-s~~~~~--a~~~g~t~VR~G~~ifg~~~ 135 (142)
++..++ | + ++++-+|+ +....+ .+.+|.+||+++|.+-...+
T Consensus 324 mY~lt~---g-~--IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp 368 (398)
T KOG1436|consen 324 MYTLTR---G-K--IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGP 368 (398)
T ss_pred HHHhcc---C-C--CceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCc
Confidence 444332 2 2 67785553 333333 47899999999998765544
No 93
>PLN02489 homocysteine S-methyltransferase
Probab=53.76 E-value=81 Score=25.67 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=41.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.|+.|+++++.+-+++++.+ ..++++|-+..-. +.-+.|.++++ .++.+. ....+-..|+=|
T Consensus 186 ~ET~~~l~E~~a~~~~~~~~~-~~~p~~iS~t~~~~~~l~~G~~~~~---~~~~~~-~~~~~~~iGiNC 249 (335)
T PLN02489 186 FETIPNKLEAQAYVELLEEEN-IKIPAWISFNSKDGVNVVSGDSLLE---CASIAD-SCKKVVAVGINC 249 (335)
T ss_pred EeccCChHHHHHHHHHHHHcC-CCCeEEEEEEeCCCCccCCCCcHHH---HHHHHH-hcCCceEEEecC
Confidence 568999999999999988765 5678888887521 12356665544 444444 444566677744
No 94
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=53.00 E-value=1.1e+02 Score=24.98 Aligned_cols=102 Identities=9% Similarity=0.159 Sum_probs=57.1
Q ss_pred ceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCC
Q 032392 26 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQC 103 (142)
Q Consensus 26 ~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 103 (142)
.+|.|+++... .-.-|.++++..++++.+. +. ..|.+.+=....+ .. .....+ ...+.+.+++... ++
T Consensus 208 ~~v~vRis~~d-~~~~G~~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~~-~~-~~~~~~--~~~~~~~ik~~~~----ip 277 (337)
T PRK13523 208 GPLFVRISASD-YHPGGLTVQDYVQYAKWMK-EQGVDLIDVSSGAVVPA-RI-DVYPGY--QVPFAEHIREHAN----IA 277 (337)
T ss_pred CCeEEEecccc-cCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCCCCCC-CC-CCCccc--cHHHHHHHHhhcC----Cc
Confidence 56778888643 2345889999999999886 43 3333322110000 00 000111 2344556666522 45
Q ss_pred eEEecCc--hh-HHHHHHcC-CcEEecCccccCCCccc
Q 032392 104 ELSMGMS--GD-FEQAIEMG-STSVRIGSTIFGPREYA 137 (142)
Q Consensus 104 ~lS~G~s--~~-~~~a~~~g-~t~VR~G~~ifg~~~~~ 137 (142)
.+..|.- +. ...+++.| .|+|-.|..+..+-...
T Consensus 278 Vi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 315 (337)
T PRK13523 278 TGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFP 315 (337)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHH
Confidence 6655643 33 33356666 79999999998876554
No 95
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=52.79 E-value=1.1e+02 Score=23.74 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC--CccCCChhhHHHHHHHHHccCCCeeEeeEee-ecCCCCCCcHHHHH
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--SKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTSTPENFR 83 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~--~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t-h~~~~~~~~~~~~~ 83 (142)
+.+.+.+|-++|++.|. -+|.|+.=+++-. -++|. .-+.++.+.+. +.+.-++.-+.. +.+.|.+.. ++
T Consensus 44 h~~Hl~al~~~a~~~gv--~~V~vH~f~DGRDt~P~S~~--~yl~~l~~~l~-~~~~g~IAsv~GRyyaMDRD~r---We 115 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGV--KKVYVHAFTDGRDTPPKSAL--KYLEELEEKLA-EIGIGRIASVSGRYYAMDRDKR---WE 115 (223)
T ss_dssp -HHHHHHHHHHHHHTT---SEEEEEEEE-SSSS-TTTHH--HHHHHHHHHHH-HHTCTEEEEEEECCCCT--TS----HH
T ss_pred cHHHHHHHHHHHHHcCC--CEEEEEEecCCCCCCcchHH--HHHHHHHHHHH-hhCCceEEEEeceeeeeccccC---HH
Confidence 56788899999998872 2355565554211 12222 22334444444 444457777766 555555443 55
Q ss_pred HHHHHHHHHH
Q 032392 84 TLLNCRAEVC 93 (142)
Q Consensus 84 ~~~~~~~~l~ 93 (142)
|.+...+.+.
T Consensus 116 Rv~~Ay~alv 125 (223)
T PF06415_consen 116 RVEKAYDALV 125 (223)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 5556666554
No 96
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=52.69 E-value=89 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=19.6
Q ss_pred cCCChhhHHHHHHHHHccCCCeeEeeEe
Q 032392 41 SGIDPSSCLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 41 ~G~~~~~~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
+|-.++.+..+.+.++..+ ++++.|.+
T Consensus 111 lG~~~~v~~~a~~~l~~~y-~l~i~g~~ 137 (243)
T PRK03692 111 VGGKPEVLAQTEAKLRTQW-NVNIVGSQ 137 (243)
T ss_pred ECCCHHHHHHHHHHHHHHh-CCEEEEEe
Confidence 3446667778888885366 89999885
No 97
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=51.86 E-value=29 Score=28.70 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeE------EecCchhHH-HHHHcCCc
Q 032392 50 GIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCEL------SMGMSGDFE-QAIEMGST 122 (142)
Q Consensus 50 ~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l------S~G~s~~~~-~a~~~g~t 122 (142)
+-.+.+. .+.+.-+..|||=.....++....|.+|.++....++. |+.. +.-+ .+|.|.+.. ..-+.|.+
T Consensus 17 ~~~~Yi~-~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl-g~~v-ivDvnPsil~~l~~S~~~l~~f~e~G~~ 93 (360)
T COG3589 17 KDIAYID-RMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL-GLRV-IVDVNPSILKELNISLDNLSRFQELGVD 93 (360)
T ss_pred hHHHHHH-HHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc-CcEE-EEEcCHHHHhhcCCChHHHHHHHHhhhh
Confidence 4455555 55577788887733332233346788888888887765 7541 1111 456676633 34577999
Q ss_pred EEecCcc
Q 032392 123 SVRIGST 129 (142)
Q Consensus 123 ~VR~G~~ 129 (142)
+||.--.
T Consensus 94 glRlD~g 100 (360)
T COG3589 94 GLRLDYG 100 (360)
T ss_pred heeeccc
Confidence 9997543
No 98
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.88 E-value=12 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEe
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
-|.-|-++|++++++.+++++.. +=++.|+.
T Consensus 93 GGLaMP~~gv~~d~~kel~ee~~----~kkliGvC 123 (154)
T COG4090 93 GGLAMPKIGVTPDDAKELLEELG----NKKLIGVC 123 (154)
T ss_pred cccccCcCCCCHHHHHHHHHhcC----CCceEEee
Confidence 36669999999999999998553 33788883
No 99
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.87 E-value=65 Score=22.79 Aligned_cols=61 Identities=8% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecC
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM 72 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~ 72 (142)
-|.+.++.+.++.++-. + .|.|..--|++.+++|-+++.+.+.++..+ ...++-+ +|=.++
T Consensus 10 HS~~lAeGv~~li~em~-~--dv~i~~~gGtddg~iGTs~~~I~~aI~~~~-~ad~~li--f~DlGS 70 (129)
T COG3412 10 HSKELAEGVAELIREMA-G--DVPITYAGGTDDGQIGTSFEKIMEAIEKAN-EADHVLV--FYDLGS 70 (129)
T ss_pred CCHHHHHHHHHHHHHHh-C--CCceEEecCCCCCCcCcCHHHHHHHHHhcc-ccCceEE--EEecch
Confidence 47788888999888864 3 676677788889999999888888777665 4444432 344554
No 100
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=48.33 E-value=1.3e+02 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcCCcEEecCccccCCCc
Q 032392 87 NCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
+.+..+++..+.+ ++.+..|+-.+ ...+...|.+.|.+|+.++.+.|
T Consensus 231 ~~v~~i~~~~~~~--ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP 280 (289)
T cd02810 231 RWVARLAARLQLD--IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGP 280 (289)
T ss_pred HHHHHHHHhcCCC--CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCc
Confidence 3444555543212 56676665444 33456889999999999998733
No 101
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=48.23 E-value=64 Score=26.10 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=47.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE-eeec
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIG 71 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl-~th~ 71 (142)
+.|+.|..+++++-+..++.+ +++-+-.-++.++ .-|.|-+.. +.+..+. .+|++-..|| .+|+
T Consensus 153 ~ETip~i~Ea~Aiv~l~~~~s-~p~wISfT~~d~~-~lr~Gt~l~---eaa~~~~-~~~~iaa~gvNC~~p 217 (300)
T COG2040 153 CETLPNITEAEAIVQLVQEFS-KPAWISFTLNDDT-RLRDGTPLS---EAAAILA-GLPNIAALGVNCCHP 217 (300)
T ss_pred ecccCChHHHHHHHHHHHHhC-CceEEEEEeCCCC-ccCCCccHH---HHHHHHh-cCcchhheeeccCCh
Confidence 357889999999999998886 7777777777654 457775544 4555566 7788888888 5565
No 102
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=48.22 E-value=80 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee-ec
Q 032392 5 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT-IG 71 (142)
Q Consensus 5 vds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t-h~ 71 (142)
|.-.+....|-+.+.+.+ .+|++ .| -.++-+.+..+.++...|+++++|.++ ++
T Consensus 91 v~G~Dl~~~Ll~~a~~~~---~~vfl---lG-------gkp~V~~~a~~~l~~~~p~l~ivg~h~GYf 145 (253)
T COG1922 91 VAGTDLVEALLKRAAEEG---KRVFL---LG-------GKPGVAEQAAAKLRAKYPGLKIVGSHDGYF 145 (253)
T ss_pred CChHHHHHHHHHHhCccC---ceEEE---ec-------CCHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 344555666666665543 44544 23 344445555555643899999999874 55
No 103
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=47.42 E-value=45 Score=26.94 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHccCCCeeEeeE
Q 032392 44 DPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 44 ~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
+.+++.++++.+. .+ ++.---+
T Consensus 249 n~~~l~~L~~~l~-~~-gv~pyyl 270 (321)
T TIGR03821 249 NADTLAALSERLF-DA-GVLPYYL 270 (321)
T ss_pred CHHHHHHHHHHHH-Hc-CCeeCcc
Confidence 4677888888776 54 3443334
No 104
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=47.12 E-value=1.6e+02 Score=24.17 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCC--CCccCCChhh-HHHHHHHHHccC--CCeeEeeEeeecCC-CCCCcHHHHHHHH
Q 032392 13 HLDKAVSNLGRKPLKVLVQVNTSGE--ESKSGIDPSS-CLGIVEHVRLRC--PNLEFSGLMTIGMP-DYTSTPENFRTLL 86 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~~--~~R~G~~~~~-~~~l~~~i~~~~--~~l~l~Gl~th~~~-~~~~~~~~~~~~~ 86 (142)
.+..+.+..| ... |.++++.... ....|.++++ ..++++.+. +. ..|.+.+ +.. ..... ..
T Consensus 215 iv~aVr~~vg-~~~-igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~-~~giD~i~vs~----~~~~~~~~~------~~ 281 (362)
T PRK10605 215 VVDAGIAEWG-ADR-IGIRISPLGTFNNVDNGPNEEADALYLIEQLG-KRGIAYLHMSE----PDWAGGEPY------SD 281 (362)
T ss_pred HHHHHHHHcC-CCe-EEEEECCccccccCCCCCCHHHHHHHHHHHHH-HcCCCEEEecc----ccccCCccc------cH
Confidence 3444444445 343 8888875421 1235788877 788998886 43 3344332 111 11111 12
Q ss_pred HHHHHHHHHhCCCCCCCeEE-ecCchhHHH-HHHcC-CcEEecCccccCCCcccc
Q 032392 87 NCRAEVCKALGMAEDQCELS-MGMSGDFEQ-AIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS-~G~s~~~~~-a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
.+.+.+++..+ .+.+. .+.|+.... +++.| .|+|-.|..+.-|-...+
T Consensus 282 ~~~~~ik~~~~----~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~ 332 (362)
T PRK10605 282 AFREKVRARFH----GVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVA 332 (362)
T ss_pred HHHHHHHHHCC----CCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHH
Confidence 33455666533 23443 344444332 46777 699999999988765544
No 105
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=45.42 E-value=26 Score=28.94 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHH
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE 53 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~ 53 (142)
+.++.|-+.|.+.| +.|.+.|+... +.++|++++++..+.+
T Consensus 47 ~~~~~l~~~a~~~~---~~v~~Disp~~-l~~lg~~~~dl~~~~~ 87 (357)
T PF05913_consen 47 ERLKELLKLAKELG---MEVIADISPKV-LKKLGISYDDLSFFKE 87 (357)
T ss_dssp HHHHHHHHHHHHCT----EEEEEE-CCH-HHTTT-BTTBTHHHHH
T ss_pred HHHHHHHHHHHHCC---CEEEEECCHHH-HHHcCCCHHHHHHHHH
Confidence 45566677777765 88988999876 7899988776655544
No 106
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.74 E-value=1.8e+02 Score=24.08 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEecCchhHHHH---HHcCCcEEecCcc
Q 032392 85 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGST 129 (142)
Q Consensus 85 ~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a---~~~g~t~VR~G~~ 129 (142)
+.+.++.+++.+ + -..+-+|+-.+.+.+ ++.|.|-||+|+.
T Consensus 138 ~i~~ik~ik~~~-P---~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIG 181 (346)
T PRK05096 138 FVQFVAKAREAW-P---DKTICAGNVVTGEMVEELILSGADIVKVGIG 181 (346)
T ss_pred HHHHHHHHHHhC-C---CCcEEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 445566677763 2 245788988877754 6889999997764
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.55 E-value=1.2e+02 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCC
Q 032392 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60 (142)
Q Consensus 8 ~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~ 60 (142)
.+.+...-+.+++.| +.+ .+++.. ..|+..+++++.++++.+. ++.
T Consensus 114 ~~~~~~~i~~a~~~G---~~v--~~~~~~-~~~~~~~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 114 LENAEEAIEAAKEAG---LEV--EGSLED-AFGCKTDPEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHHHCC---CeE--EEEEEe-ecCCCCCHHHHHHHHHHHH-HcC
Confidence 344444445555555 333 333311 1333467788888888877 553
No 108
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=42.36 E-value=1.9e+02 Score=23.66 Aligned_cols=50 Identities=6% Similarity=-0.013 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC
Q 032392 5 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 5 vds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
.-+.++++.|++++.+.+ . - .+++.|.....=.|++.+++.++.+.+. +.
T Consensus 40 ~lt~eqLr~LAdiaekyg-~-g--~i~lTtrQnI~l~~I~~edl~~i~~~L~-~~ 89 (341)
T TIGR02066 40 LLSVDTLRKLCDIADKYS-D-G--YLRWTIRNNVEFLVSDESKIQPLIDELE-EV 89 (341)
T ss_pred ccCHHHHHHHHHHHHHhC-C-C--eEEEeccCCEEEecCCHHHHHHHHHHHH-hc
Confidence 457899999999999987 2 2 3456566445455889999999999887 54
No 109
>PRK07534 methionine synthase I; Validated
Probab=42.19 E-value=1.6e+02 Score=23.95 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=31.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHH
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE 53 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~ 53 (142)
+.|+.|+++++.+-+++++.+ .++-|.+-++.++ --+.|-+.+++.+.++
T Consensus 150 ~ET~p~l~E~~a~~~~~~~~~-~Pv~vSft~~~~g-~l~~G~~~~~~~~~~~ 199 (336)
T PRK07534 150 VETISAPEEIRAAAEAAKLAG-MPWCGTMSFDTAG-RTMMGLTPADLADLVE 199 (336)
T ss_pred EeccCCHHHHHHHHHHHHHcC-CeEEEEEEECCCC-eeCCCCcHHHHHHHHH
Confidence 568999999999999998765 4444444444332 2356666555444443
No 110
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=42.13 E-value=91 Score=21.55 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=30.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP 45 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~ 45 (142)
+.-|+|.+++..|.+.+.+.| .+..+..|+-.|+ ..=+|+-|
T Consensus 59 VLkv~~e~eL~~L~~~a~~~g-i~~~l~te~p~gt-~T~LaigP 100 (116)
T cd02429 59 VLEVPDEAALKNLSSKLTENS-IKHKLWIEQPENI-PTCIALKP 100 (116)
T ss_pred EEEeCCHHHHHHHHHHHHHcC-CCeEEEEEcCCCC-ceEEEeCC
Confidence 346889999999999998887 6777777776664 34456544
No 111
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=41.35 E-value=92 Score=27.71 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccC--CChhhHHHH----HHHHHccCCCeeE
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG--IDPSSCLGI----VEHVRLRCPNLEF 64 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G--~~~~~~~~l----~~~i~~~~~~l~l 64 (142)
+.+++...-++|+.. ...+|.||+.-| |-| -+++++.++ +.+++ .++|+.+
T Consensus 160 tIeqI~svi~IAka~--P~~pIilq~egG----raGGHHSweDld~llL~tYs~lR-~~~NIvl 216 (717)
T COG4981 160 TIEQIRSVIRIAKAN--PTFPIILQWEGG----RAGGHHSWEDLDDLLLATYSELR-SRDNIVL 216 (717)
T ss_pred cHHHHHHHHHHHhcC--CCCceEEEEecC----ccCCccchhhcccHHHHHHHHHh-cCCCEEE
Confidence 455555656666664 678999998766 555 466666544 45678 8999875
No 112
>PLN02334 ribulose-phosphate 3-epimerase
Probab=41.05 E-value=75 Score=24.06 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=37.8
Q ss_pred eeEeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeE-EecCchhH-HHHHHcCCcEEecCccccCCC
Q 032392 62 LEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSGDF-EQAIEMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 62 l~l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~~~-~~a~~~g~t~VR~G~~ifg~~ 134 (142)
+...++|++.+. +-+. ....++++.++.+ . ... .+.. -.|.+..- ....+.|.+.|=+|++||+..
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~----~-~~~--~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~ 209 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRK----K-YPE--LDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAP 209 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHH----h-CCC--CcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 566777776653 2222 2345555554332 2 111 3333 33666443 335688999999999999854
No 113
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=40.47 E-value=1.5e+02 Score=22.38 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=14.0
Q ss_pred CChhhHHHHHHHHHccCCCeeEeeE
Q 032392 43 IDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
.+.+|+....+.+. .+..+-..|+
T Consensus 66 Ys~~E~~~M~~dI~-~~~~~GadG~ 89 (201)
T PF03932_consen 66 YSDEEIEIMKEDIR-MLRELGADGF 89 (201)
T ss_dssp --HHHHHHHHHHHH-HHHHTT-SEE
T ss_pred CCHHHHHHHHHHHH-HHHHcCCCee
Confidence 46677777777766 5555566676
No 114
>PRK13776 formimidoylglutamase; Provisional
Probab=39.70 E-value=2e+02 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
||+ ..-.|+++.++.++++.+. ..+++.-..|+-+-+.
T Consensus 259 tgt-P~pgGLt~~e~~~il~~l~-~~~~vvg~DvvEv~P~ 296 (318)
T PRK13776 259 VSA-PAARGVSLWVIEPLVKRII-ASGKLRLADIAELNPP 296 (318)
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-ccCCEEEEEEEEECCC
Confidence 455 6778999999999999986 5554554444555554
No 115
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=39.67 E-value=1.7e+02 Score=22.23 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCC------CCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHH
Q 032392 10 IANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR 83 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~ 83 (142)
....+.+.+.+.| ..+-+|+-...-. +.=..|.+.+++...++...+..| ...|+..|.+.-. ...-.
T Consensus 33 ~~~~~a~~a~~~G-~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp--~a~GvnNhmGS~~---T~~~~ 106 (213)
T PF04748_consen 33 YSREWAERARAAG-HEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVP--GAVGVNNHMGSRF---TSDRE 106 (213)
T ss_dssp THHHHHHHHHHCT--EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCST--T-SEEEEEE-CCH---HC-HH
T ss_pred ChHHHHHHHHHcC-CEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCC--CcEEEecCCCccc---cCCHH
Confidence 4566777777777 5554544433322 122334567777766665532788 5679988876422 22334
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccc
Q 032392 84 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTI 130 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~i 130 (142)
.+..+.+.|++. |+-+ ++-.+.+.|-.+..|.+.|.-..+.-.+|
T Consensus 107 ~m~~vl~~l~~~-gl~F-vDS~T~~~s~a~~~A~~~gvp~~~rdvfL 151 (213)
T PF04748_consen 107 AMRWVLEVLKER-GLFF-VDSRTTPRSVAPQVAKELGVPAARRDVFL 151 (213)
T ss_dssp HHHHHHHHHHHT-T-EE-EE-S--TT-SHHHHHHHCT--EEE-SEET
T ss_pred HHHHHHHHHHHc-CCEE-EeCCCCcccHHHHHHHHcCCCEEeeceec
Confidence 456666777776 6421 11224456666778888898777754433
No 116
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.83 E-value=1.3e+02 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=14.2
Q ss_pred CChhhHHHHHHHHHccCCCeeEeeE
Q 032392 43 IDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
-+.+++.++++.+. ++ ++.---+
T Consensus 242 d~~~~l~~l~~~l~-~~-gv~pyyl 264 (321)
T TIGR03822 242 DDPETLAALMRAFV-EC-RIKPYYL 264 (321)
T ss_pred CCHHHHHHHHHHHH-hc-CCeeEEE
Confidence 45677888888776 54 3443334
No 117
>PRK07738 flagellar protein FlaG; Provisional
Probab=38.67 E-value=1.1e+02 Score=21.28 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCC-------CCccC-----CChhhHHHHHHHHHccCCCeeE
Q 032392 10 IANHLDKAVSNLGRKPLKVLVQVNTSGE-------ESKSG-----IDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~-------~~R~G-----~~~~~~~~l~~~i~~~~~~l~l 64 (142)
.++.+++.....+ +.+.. .++-..+ ..++| ++++++.++++.+. .+-||-+
T Consensus 51 aveklN~~l~~~~-~~L~F--~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~-e~~GlLv 113 (117)
T PRK07738 51 VVDGMNELLEPSQ-TSLKF--ELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAMM-EFVGLLV 113 (117)
T ss_pred HHHHHHHHHHhcC-CceEE--EEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHH-HHhccee
Confidence 3456677766554 44444 3332100 12355 58899999999998 6655543
No 118
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=38.63 E-value=1.6e+02 Score=24.37 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEecCchhHHHH--HHcC--CcEEecCccccCC
Q 032392 85 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQA--IEMG--STSVRIGSTIFGP 133 (142)
Q Consensus 85 ~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a--~~~g--~t~VR~G~~ifg~ 133 (142)
++++++.|.+. |++ .+.++-.|+-+-..++ .+.| .|..=+||.|..-
T Consensus 266 ~~~vr~~Ld~~-g~~-~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 266 IKALRKALDEN-GGK-HVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred HHHHHHHHhhC-CCC-CcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 34444455555 532 2566644444333332 3445 5888888887764
No 119
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.13 E-value=1.4e+02 Score=23.06 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
+.+...-+.+++.| . .| .++.-. .+| .+++.+.++++.+. +.
T Consensus 110 ~~~~~~i~~a~~~G-~--~v--~~~~~~-~~~--~~~~~~~~~~~~~~-~~ 151 (259)
T cd07939 110 DQLRRLVGRAKDRG-L--FV--SVGAED-ASR--ADPDFLIEFAEVAQ-EA 151 (259)
T ss_pred HHHHHHHHHHHHCC-C--eE--EEeecc-CCC--CCHHHHHHHHHHHH-HC
Confidence 33445555666666 3 33 333321 223 56788888888776 54
No 120
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=37.63 E-value=1.8e+02 Score=23.16 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=38.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.|+.++++++.+-+.+++.. ..++|++.+.... +.-+.|-++ .+.++.+. ..+.+-..|+=|
T Consensus 159 ~ET~~~~~E~~~~~~~~~~~~-~~~pv~is~~~~~~g~l~~G~~~---~~~~~~l~-~~~~~~~iGiNC 222 (304)
T PRK09485 159 CETIPNLDEAEALVELLKEEF-PGVPAWLSFTLRDGTHISDGTPL---AEAAALLA-ASPQVVAVGVNC 222 (304)
T ss_pred EeccCCHHHHHHHHHHHHHhc-CCCcEEEEEEeCCCCcCCCCCCH---HHHHHHHh-cCCCceEEEecC
Confidence 468899999999888887541 2355665555421 134556544 44555555 555667777744
No 121
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=37.62 E-value=1.5e+02 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCCCCc----cCCChhhHHHHHHHHHccCC-CeeEeeE
Q 032392 35 SGEESK----SGIDPSSCLGIVEHVRLRCP-NLEFSGL 67 (142)
Q Consensus 35 g~~~~R----~G~~~~~~~~l~~~i~~~~~-~l~l~Gl 67 (142)
|.+.++ .|++.+++.+++..++ ++. +..+.||
T Consensus 218 G~~~~~~eev~gvp~~~i~e~a~~mK-na~Fg~if~Gl 254 (429)
T COG1029 218 GKEPHRSEEVAGVPIEEIEELADMMK-NAKFGAIFVGL 254 (429)
T ss_pred CCCCCCchhhcCCCHHHHHHHHHHHh-cCCcceEEEee
Confidence 555666 8999999999999998 665 6667776
No 122
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=37.62 E-value=2.2e+02 Score=23.07 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCCc--cCCChhhHHHHHHHHHccC--CCeeEeeEeeecCCCCCCcHHHHHHHHHHH
Q 032392 14 LDKAVSNLGRKPLKVLVQVNTSGEESK--SGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFRTLLNCR 89 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~R--~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~ 89 (142)
+..+.+..| .. .|.++++....... .|.++++..++++.+. +. ..|.+ +++...... . ..+..+.
T Consensus 209 i~air~~vg-~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~-~~g~d~i~v----s~g~~~~~~-~---~~~~~~~ 277 (338)
T cd02933 209 VDAVAEAIG-AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELN-KRGLAYLHL----VEPRVAGNP-E---DQPPDFL 277 (338)
T ss_pred HHHHHHHhC-CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHH-HcCCcEEEE----ecCCCCCcc-c---ccchHHH
Confidence 333434445 33 47778876532222 3567788889998886 43 34443 222211111 1 1123444
Q ss_pred HHHHHHhCCCCCCCeE-EecCchhHH-HHHHcC-CcEEecCccccCCCcccc
Q 032392 90 AEVCKALGMAEDQCEL-SMGMSGDFE-QAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 90 ~~l~~~~g~~~~~~~l-S~G~s~~~~-~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
+.+++..+ ++.+ +.|.++... .+++.| .|+|-.|..+..+-...+
T Consensus 278 ~~ik~~~~----ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~ 325 (338)
T cd02933 278 DFLRKAFK----GPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVE 325 (338)
T ss_pred HHHHHHcC----CCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHH
Confidence 55555433 3445 444543322 245665 799999999988765443
No 123
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=37.02 E-value=38 Score=27.92 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.2
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEe
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVN 33 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~ 33 (142)
+|.++++++.+.+.|+++| +++ ++|
T Consensus 145 tVy~l~el~~i~~~~k~~~---l~L--HmD 169 (342)
T COG2008 145 TVYPLDELEAISAVCKEHG---LPL--HMD 169 (342)
T ss_pred eecCHHHHHHHHHHHHHhC---Cce--eec
Confidence 6899999999999999976 666 455
No 124
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=36.83 E-value=1.7e+02 Score=23.18 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
+.+..+-+.+++.| ..+.+.+. +.+ .-+-.+++.+.++++.+. +.
T Consensus 115 ~~~~~~i~~a~~~G-~~v~~~~~-d~~---~~~r~~~~~~~~~~~~~~-~~ 159 (280)
T cd07945 115 ADIREVIEYAIKNG-IEVNIYLE-DWS---NGMRDSPDYVFQLVDFLS-DL 159 (280)
T ss_pred HHHHHHHHHHHhCC-CEEEEEEE-eCC---CCCcCCHHHHHHHHHHHH-Hc
Confidence 33444555566666 33333332 122 111246777778887776 54
No 125
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=36.55 E-value=1.5e+02 Score=23.99 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeE-eeecC--CCCCCcHHHHHHHHHH
Q 032392 14 LDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGL-MTIGM--PDYTSTPENFRTLLNC 88 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl-~th~~--~~~~~~~~~~~~~~~~ 88 (142)
+..+.+..| ...+|.++++... ...-|...++..++++.+. .+ .-+.+.+. +.+.. ....+..........+
T Consensus 206 i~aIr~~vg-~d~~v~~Rls~~~-~~~~g~~~~e~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (341)
T PF00724_consen 206 IEAIREAVG-PDFPVGVRLSPDD-FVEGGITLEETIEIAKLLE-ELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDL 282 (341)
T ss_dssp HHHHHHHHT-GGGEEEEEEETTC-SSTTSHHSHHHHHHHHHHH-HHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHH
T ss_pred HHHHHHHhc-CCceEEEEEeeec-ccCCCCchHHHHHHHHHHH-HHhhhhccccccccccccccccccccccccchhhhh
Confidence 444444446 6678999999864 3456666666655555543 21 23433322 22222 1111111000011233
Q ss_pred HHHHHHHhCCCCCCCeEEecCchhHH---HHHHcC-CcEEecCccccCCCcccc
Q 032392 89 RAEVCKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 89 ~~~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
.+.+++... .+.+..|.-.+-. .+++.| .|+|-.|..+.-|-..++
T Consensus 283 a~~ik~~~~----~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~ 332 (341)
T PF00724_consen 283 AEAIKKAVK----IPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPN 332 (341)
T ss_dssp HHHHHHHHS----SEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHH
T ss_pred hhhhhhhcC----ceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHH
Confidence 344555433 3456556554544 235555 699999998877655443
No 126
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.72 E-value=1.7e+02 Score=21.23 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCe-EEecCchhHHH-HHHcCCcEEecCccccCCCc
Q 032392 80 ENFRTLLNCRAEVCKALGMAEDQCE-LSMGMSGDFEQ-AIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~~~g~~~~~~~-lS~G~s~~~~~-a~~~g~t~VR~G~~ifg~~~ 135 (142)
..++.+.++.+.+.+. +.. ++. +..|.+++-.. ..+.|.+.|=+|+++|+...
T Consensus 147 ~~~~~i~~i~~~~~~~-~~~--~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d 201 (210)
T TIGR01163 147 DTLEKIREVRKMIDEN-GLS--ILIEVDGGVNDDNARELAEAGADILVAGSAIFGADD 201 (210)
T ss_pred HHHHHHHHHHHHHHhc-CCC--ceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 4455555555444332 222 334 45567654332 36789999999999998553
No 127
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=35.32 E-value=2.8e+02 Score=23.62 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC---CCCccCCChhhHHHHHHHHHc--cCCC-eeEeeEeeecCCCC
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG---EESKSGIDPSSCLGIVEHVRL--RCPN-LEFSGLMTIGMPDY 75 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~---~~~R~G~~~~~~~~l~~~i~~--~~~~-l~l~Gl~th~~~~~ 75 (142)
|.||+|..-+-.-+.+..... ...+|+|+=...- ..+=+|+.|.++.+++..+.+ .+|. .-+-|-=+-+++..
T Consensus 19 I~SVCsahp~VieAAl~~a~~-~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~~w 97 (424)
T PF08013_consen 19 IYSVCSAHPLVIEAALERAKE-DDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPNPW 97 (424)
T ss_dssp EEEE----HHHHHHHHHHCCC-S-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSCCC
T ss_pred eEEecCCCHHHHHHHHHHHHh-cCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcccc
Confidence 456666554432222222122 4578888644211 124457899999999988852 3454 22333333344422
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhCCCCCCCeE--EecCchh
Q 032392 76 --TSTPENFRTLLNCRAEVCKALGMAEDQCEL--SMGMSGD 112 (142)
Q Consensus 76 --~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l--S~G~s~~ 112 (142)
.+..++.++-.+++...-++ |++ .-|| ||+-.++
T Consensus 98 ~~lpaeeAM~~A~~li~ayv~A-GF~--KIHLD~Sm~ca~d 135 (424)
T PF08013_consen 98 QHLPAEEAMAKAKELIRAYVEA-GFT--KIHLDCSMDCAGD 135 (424)
T ss_dssp TTSBHHHHHHHHHHHHHHHHCT-T----EEEE---C--CTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc-CCc--eEeecCCCCCCCC
Confidence 33456666666666666555 877 5677 6654433
No 128
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.21 E-value=1.6e+02 Score=23.28 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHHccC
Q 032392 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 8 ~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
++.+...-+.++++| ..+.+.|..-.+. ..+| .+++.+.++++.+. ++
T Consensus 119 l~~~~~~v~~ak~~g-~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~-~~ 167 (287)
T PRK05692 119 LERFEPVAEAAKQAG-VRVRGYVSCVLGCPYEGE--VPPEAVADVAERLF-AL 167 (287)
T ss_pred HHHHHHHHHHHHHcC-CEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHH-Hc
Confidence 445555666666666 4444433332221 1122 35677778888776 55
No 129
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.21 E-value=3.5e+02 Score=24.57 Aligned_cols=112 Identities=8% Similarity=0.116 Sum_probs=60.8
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC--CCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHH
Q 032392 15 DKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 92 (142)
Q Consensus 15 ~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l 92 (142)
+.+.+..+ ..++|.++|+... ...-|.++++..++++.+. +. ..|.+.+=.+.. .........+ ...+.+.+
T Consensus 609 ~~ir~~~~-~~~~v~~ri~~~~-~~~~g~~~~~~~~~~~~l~-~~g~d~i~vs~g~~~~-~~~~~~~~~~--~~~~~~~i 682 (765)
T PRK08255 609 RAVRAVWP-AEKPMSVRISAHD-WVEGGNTPDDAVEIARAFK-AAGADLIDVSSGQVSK-DEKPVYGRMY--QTPFADRI 682 (765)
T ss_pred HHHHHhcC-CCCeeEEEEcccc-ccCCCCCHHHHHHHHHHHH-hcCCcEEEeCCCCCCc-CCCCCcCccc--cHHHHHHH
Confidence 33333345 5678888998643 3345888899899999886 54 233332111110 0000000111 12344566
Q ss_pred HHHhCCCCCCCeEEecCchhHH---HHHHcC-CcEEecCccccCCCcc
Q 032392 93 CKALGMAEDQCELSMGMSGDFE---QAIEMG-STSVRIGSTIFGPREY 136 (142)
Q Consensus 93 ~~~~g~~~~~~~lS~G~s~~~~---~a~~~g-~t~VR~G~~ifg~~~~ 136 (142)
++..+ ++.+..|.-.+.. .+++.| .|+|-+|..+..+-..
T Consensus 683 k~~~~----~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 683 RNEAG----IATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred HHHcC----CEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 66533 4566666543333 345554 7999999999887644
No 130
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=34.55 E-value=20 Score=25.94 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEe
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
=|.-|-++|++++++.++++.+. . =.+.|+.
T Consensus 88 GGLAMP~~~v~~e~v~~li~ki~-~---~~iiGiC 118 (147)
T PF09897_consen 88 GGLAMPKSGVTPEDVNELIKKIS-P---KKIIGIC 118 (147)
T ss_dssp GGGGSTTTS--HHHHHHHHHHHE-E---EEEEEEE
T ss_pred cccccCCCCCCHHHHHHHHHHhC-c---CCEEEEe
Confidence 35558999999999999999886 2 2288883
No 131
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=33.98 E-value=2.1e+02 Score=21.75 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=21.6
Q ss_pred EecCchh-HHHHHHcCCcEEecCccccCCCc
Q 032392 106 SMGMSGD-FEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 106 S~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
-.|.+.. ...+.+.|.+.+=+|++||+...
T Consensus 179 dGGI~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 179 DGGINLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 4455544 33457889999999999998543
No 132
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=33.62 E-value=1.6e+02 Score=25.22 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=34.4
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccC--CChhhHHHHHHHHH
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG--IDPSSCLGIVEHVR 56 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G--~~~~~~~~l~~~i~ 56 (142)
++|..+.-+.++++. + + ...++++-||.| |-+| .+.+.+.++++...
T Consensus 197 ~ld~~el~~~~~eA~-k-~-i~~r~lvvINPG---NPTGqvls~e~ie~i~~fa~ 245 (475)
T KOG0258|consen 197 SLDVAELERSVDEAR-K-G-INPRALVVINPG---NPTGQVLSEENIEGIICFAA 245 (475)
T ss_pred CCCHHHHHHHHHHHh-c-c-CCceEEEEECCC---CccchhhcHHHHHHHHHHHH
Confidence 345556666677776 3 4 578999999999 7788 46677788888776
No 133
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.62 E-value=2.1e+02 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=9.9
Q ss_pred CChhhHHHHHHHHHccC
Q 032392 43 IDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~ 59 (142)
.+++.+.++++.+. ++
T Consensus 140 ~~~~~~~~~~~~~~-~~ 155 (268)
T cd07940 140 TDLDFLIEVVEAAI-EA 155 (268)
T ss_pred CCHHHHHHHHHHHH-Hc
Confidence 45666666776665 44
No 134
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=32.61 E-value=1.9e+02 Score=20.82 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~ 56 (142)
-|++.|..|.+.....+...+++-|++|+|. -|-+-+-+.+.+-.+.
T Consensus 74 ~S~e~A~~l~~~l~~~~~~~~~~EiHiDIg~----~g~T~~~i~E~vG~v~ 120 (144)
T PF04308_consen 74 LSLEVAEKLCDLLLPYGYADVDLEIHIDIGT----NGKTRELIKEVVGYVE 120 (144)
T ss_pred HHHHHHHHHHHHHHhcccCCccEEEEEEcCC----CCchHHHHHHHHHHHH
Confidence 3778888888888654312344545666662 4444344455555555
No 135
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=32.52 E-value=2.6e+02 Score=22.35 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.+++..+.+.+.+.| . -.| .+ ||+|+- ...++.++++.++ +.+++.-.++-|-
T Consensus 46 s~eei~~li~~~~~~G-v-~~I--~~-tGGEPl----lr~dl~~li~~i~-~~~~l~~i~itTN 99 (329)
T PRK13361 46 SLEELAWLAQAFTELG-V-RKI--RL-TGGEPL----VRRGCDQLVARLG-KLPGLEELSLTTN 99 (329)
T ss_pred CHHHHHHHHHHHHHCC-C-CEE--EE-ECcCCC----ccccHHHHHHHHH-hCCCCceEEEEeC
Confidence 4556666666555555 2 123 33 554442 2246777887777 6655543444443
No 136
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=32.38 E-value=2.9e+02 Score=22.81 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCceEEEEEeCCCCCCccCCChhhH-----HHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCC
Q 032392 24 KPLKVLVQVNTSGEESKSGIDPSSC-----LGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGM 98 (142)
Q Consensus 24 ~~~~v~I~v~tg~~~~R~G~~~~~~-----~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 98 (142)
..+.+|++.---. ..|-|..++++ .+.++.+. +..+ .++ ++|..+-. +. .++++.|.+. |+
T Consensus 124 ~~~G~HlEGPfi~-~~~~Gah~~~~~~~p~~~~~~~~~-~~~~-~i~-~iTlAPE~--~~-------~~~i~~l~~~-gi 189 (382)
T PRK11170 124 QALGLHLEGPYLN-LVKKGTHNPEFIRKPDAEMVDFLC-ENAD-VIT-KVTLAPEM--VD-------AEVIRKLVEA-GI 189 (382)
T ss_pred eEEEEEeecCCCC-cccCCCCCHHHhcCcCHHHHHHHH-hccC-CEE-EEEECCCC--Cc-------HHHHHHHHHC-Cc
Confidence 3566766654221 45778644333 34455554 3322 122 78888741 11 1455666665 65
Q ss_pred CCCCCeEEecCchh-HH---HHHHcCCcEE
Q 032392 99 AEDQCELSMGMSGD-FE---QAIEMGSTSV 124 (142)
Q Consensus 99 ~~~~~~lS~G~s~~-~~---~a~~~g~t~V 124 (142)
.+|+|-|+. |+ .|.+.|.+.+
T Consensus 190 -----~vs~GHs~A~~~~~~~a~~~Ga~~~ 214 (382)
T PRK11170 190 -----VVSAGHSNATYEEAKAGFRAGITFA 214 (382)
T ss_pred -----EEEeeCCcCCHHHHHHHHHcCCCEE
Confidence 489997754 33 4567787654
No 137
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=31.81 E-value=2.6e+02 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCeEEecCchhHH---HHHHcCCcEEecCccccCCCc
Q 032392 102 QCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 102 ~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg~~~ 135 (142)
++.+-.|+-.+.+ .+...|.+.|.+|+++|...+
T Consensus 253 ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~ 289 (299)
T cd02940 253 LPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGF 289 (299)
T ss_pred CcEEEECCCCCHHHHHHHHHcCCChheEceeecccCC
Confidence 5677666554444 346789999999999887443
No 138
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.72 E-value=2.4e+02 Score=21.97 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
.+.+.+...-+.++++| . .|.+.+-.. ++.+++.+.++++.+. +.
T Consensus 106 ~~~~~~~~~i~~ak~~G-~--~v~~~~~~a-----~~~~~~~~~~~~~~~~-~~ 150 (266)
T cd07944 106 HEFDEALPLIKAIKEKG-Y--EVFFNLMAI-----SGYSDEELLELLELVN-EI 150 (266)
T ss_pred ccHHHHHHHHHHHHHCC-C--eEEEEEEee-----cCCCHHHHHHHHHHHH-hC
Confidence 45666666777777766 3 343333222 2367777888888776 55
No 139
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.48 E-value=2.4e+02 Score=22.89 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=6.6
Q ss_pred ChhhHHHHHHHHH
Q 032392 44 DPSSCLGIVEHVR 56 (142)
Q Consensus 44 ~~~~~~~l~~~i~ 56 (142)
+++.+.++++.+.
T Consensus 142 ~~e~l~~~a~~~~ 154 (337)
T PRK08195 142 PPEKLAEQAKLME 154 (337)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555544
No 140
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=31.19 E-value=2.7e+02 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
||+ ....|+++.++..+++.+. ..+.+.-..|.-+.+.
T Consensus 237 v~t-p~pgGl~~~e~~~~l~~i~-~~~~v~g~DivE~~P~ 274 (300)
T TIGR01229 237 TGT-PVVGGLTFREGLLIMEMLY-ETGLLTALDVVEVNPT 274 (300)
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-hcCCEEEEEEEEECcc
Confidence 454 6778999999999999987 6555554444556654
No 141
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=30.96 E-value=2.2e+02 Score=24.55 Aligned_cols=55 Identities=7% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC--CccCCChhhHHHHHHHHHccCCCe
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--SKSGIDPSSCLGIVEHVRLRCPNL 62 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~--~R~G~~~~~~~~l~~~i~~~~~~l 62 (142)
-|.+.++.+.+++.+.. ..-+|.|..--|++. +++|-+++.+.+.++.+. ...++
T Consensus 9 Hs~~la~g~~~l~~qm~-~~~~v~i~~agG~~d~~~~~Gt~~~~i~~ai~~~~-~~~gv 65 (473)
T PRK11377 9 HSARLGEGVGELARQML-MSDGCKLAIAAGIDDPQNPIGTDAVKVMEAIESVA-DADHV 65 (473)
T ss_pred CcHHHHHHHHHHHHHhc-CCCCceEEEecCCCCCCCCCCCCHHHHHHHHHhcc-CCCCE
Confidence 47788888999998862 222566677677767 899999998888888876 54443
No 142
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.79 E-value=1.7e+02 Score=23.25 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChh-hHH-HHHHHHHccCCCeeEeeEeeecCC
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCL-GIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~-~~~-~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
+.+..+=+.|+++| ++| .|.||....-.+.... ... .+-..+. +.|+|++ |+.|.+.
T Consensus 144 ~~~~pi~~~a~~~g---vpv--~ihtG~~~~~~~~~~~~~~p~~~~~va~-~fP~l~I--Vl~H~G~ 202 (293)
T COG2159 144 PRLYPIYEAAEELG---VPV--VIHTGAGPGGAGLEKGHSDPLYLDDVAR-KFPELKI--VLGHMGE 202 (293)
T ss_pred hHHHHHHHHHHHcC---CCE--EEEeCCCCCCcccccCCCCchHHHHHHH-HCCCCcE--EEEecCC
Confidence 33556667777777 455 3467743333332210 111 2223335 8899998 7888874
No 143
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=29.70 E-value=81 Score=21.51 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred CccCCChhhHHHHHHHHHccCCCeeEeeE-eeecCC
Q 032392 39 SKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMP 73 (142)
Q Consensus 39 ~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl-~th~~~ 73 (142)
.+|=+++++.....+.+. .. ++++.|+ +||+..
T Consensus 49 ~~f~~d~~~~~~~~~~~~-~~-g~~~vG~~HSHP~~ 82 (128)
T cd08070 49 RRFEIDPAEQLAAQREAR-ER-GLEVVGIYHSHPDG 82 (128)
T ss_pred ceEEECHHHHHHHHHHHH-HC-CCeEEEEEeCCCCC
Confidence 455568888777777776 44 6999999 779965
No 144
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=29.51 E-value=3.1e+02 Score=24.54 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCC----CCccCCChhhH-HHHHHHHHccCCCeeEeeE-eeecCCCCCCcHHHHH
Q 032392 10 IANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPSSC-LGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENFR 83 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~----~~R~G~~~~~~-~~l~~~i~~~~~~l~l~Gl-~th~~~~~~~~~~~~~ 83 (142)
....+-+.|+++| . ++-|=+|.|-- ++|.|-.|+.+ ...++.++ -|..+.+.-+ +++-+.+.......++
T Consensus 142 ~~~~~v~~ak~~~-~--~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~-i~e~~~f~diviS~KsS~~~~~V~AyR 217 (611)
T PRK02048 142 RFVPFLNICKENH-T--AIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLR-ICVEEHFTDVVISIKASNTVVMVRTVR 217 (611)
T ss_pred HHHHHHHHHHHCC-C--CEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHH-HHHHCCCCcEEEEEEeCCcHHHHHHHH
Confidence 3445667777776 4 45448887632 35788766543 33344443 3334444444 6666554322234444
Q ss_pred HHHHHHHHHHHHhCCCC
Q 032392 84 TLLNCRAEVCKALGMAE 100 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~ 100 (142)
+ +++.+.++ |.+.
T Consensus 218 l---La~~l~~~-g~dy 230 (611)
T PRK02048 218 L---LVAVMEAE-GMHY 230 (611)
T ss_pred H---HHHHHHhc-CCCC
Confidence 4 45555555 6664
No 145
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=29.27 E-value=84 Score=24.64 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHcc-----CCCeeEeeE-eeecCC
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLR-----CPNLEFSGL-MTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~-----~~~l~l~Gl-~th~~~ 73 (142)
++....|+-++|++.....+.+. . -.++.+.|. +||+..
T Consensus 57 ~~~s~~r~eidPee~~~a~~ea~-~~~~~~~rgl~vVGwYHSHP~~ 101 (244)
T cd08068 57 SDKRKDRVEISPEQLSAASTEAE-RLTEETGRPMRVVGWYHSHPHI 101 (244)
T ss_pred cCCCCceEEeCHHHHHHHHHHHH-HHHhhccCCceEEEEEecCCCC
Confidence 33335678899988776666554 3 257999999 669976
No 146
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=29.05 E-value=3.5e+02 Score=22.72 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=37.5
Q ss_pred CeeEeeEee-ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh-HHHHHHcCCcEEecCccccCCCcc
Q 032392 61 NLEFSGLMT-IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 61 ~l~l~Gl~t-h~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
.+.+..+|+ +.+. .....++++.+ +++. +.+. .-.+..|.+.. ...+.+.|.+.+=+|++||+...+
T Consensus 299 ~vD~Vllht~vdp~---~~~~~~~kI~~----ikk~-~~~~-~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp 367 (391)
T PRK13307 299 KPDVVELHRGIDEE---GTEHAWGNIKE----IKKA-GGKI-LVAVAGGVRVENVEEALKAGADILVVGRAITKSKDV 367 (391)
T ss_pred CCCEEEEccccCCC---cccchHHHHHH----HHHh-CCCC-cEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 456667776 4433 11223344433 3332 3221 12446666644 334578899999999999986443
No 147
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.87 E-value=3.1e+02 Score=22.04 Aligned_cols=108 Identities=15% Similarity=0.257 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC---CCCCcHHHH
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTSTPENF 82 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~---~~~~~~~~~ 82 (142)
.+++.+.++-+...+. ..++|.+++..|-.. +.+++.++++.+. +.. +..|..|+-. .+... ..+
T Consensus 116 ~~p~~~~eiv~av~~a--~d~pv~vKiR~G~~~-----~~~~~~~~a~~le-~~G---~d~i~vh~rt~~~~~~G~-a~~ 183 (321)
T PRK10415 116 QYPDLVKSILTEVVNA--VDVPVTLKIRTGWAP-----EHRNCVEIAQLAE-DCG---IQALTIHGRTRACLFNGE-AEY 183 (321)
T ss_pred cCHHHHHHHHHHHHHh--cCCceEEEEEccccC-----CcchHHHHHHHHH-HhC---CCEEEEecCccccccCCC-cCh
Confidence 4567777766655442 345666677655211 2235667777765 432 2233334322 11110 111
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEecCchhH---HHHHH-cCCcEEecCccccCC
Q 032392 83 RTLLNCRAEVCKALGMAEDQCELSMGMSGDF---EQAIE-MGSTSVRIGSTIFGP 133 (142)
Q Consensus 83 ~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~---~~a~~-~g~t~VR~G~~ifg~ 133 (142)
+++..+++.. + ++.+..|.-.+. ..+.+ .|.+.|-+|+.++++
T Consensus 184 ----~~i~~ik~~~--~--iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~n 230 (321)
T PRK10415 184 ----DSIRAVKQKV--S--IPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 (321)
T ss_pred ----HHHHHHHHhc--C--CcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcC
Confidence 3444455442 2 466755644443 33454 589999999999986
No 148
>PRK08452 flagellar protein FlaG; Provisional
Probab=28.66 E-value=1.7e+02 Score=20.54 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=15.9
Q ss_pred CChhhHHHHHHHHHccCCCee
Q 032392 43 IDPSSCLGIVEHVRLRCPNLE 63 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~~~l~ 63 (142)
+|++++.++++.+. .+-+|-
T Consensus 100 IP~Ee~L~l~~~m~-e~~GlL 119 (124)
T PRK08452 100 IPSKEAIELMEYMR-DVIGII 119 (124)
T ss_pred CCCHHHHHHHHHHH-Hhhhhe
Confidence 68899999999998 665543
No 149
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=28.28 E-value=3.6e+02 Score=22.68 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=38.8
Q ss_pred ccCCChhhHHHHHHHHHccCCC--eeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeE---EecCchhHH
Q 032392 40 KSGIDPSSCLGIVEHVRLRCPN--LEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCEL---SMGMSGDFE 114 (142)
Q Consensus 40 R~G~~~~~~~~l~~~i~~~~~~--l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l---S~G~s~~~~ 114 (142)
.+|++++++.++++.+.+..+. +.++.=+ +..+...+++.+..+.+.++++ |.. .+.+ |+-+..++.
T Consensus 242 ~~~~~~~~ai~~l~~l~~~~~~~~~~iEqPv-----~~~d~~~~~e~la~Lr~~~~~~-~~~--vPI~aDEs~~t~~d~~ 313 (408)
T TIGR01502 242 AFGVDIKAMADYIQTLAEAAKPFHLRIEGPM-----DVGSRQAQIEAMADLRAELDGR-GVD--AEIVADEWCNTVEDVK 313 (408)
T ss_pred ccCCCHHHHHHHHHHHHHhCccCCeEEecCC-----CCCcchhhHHHHHHHHHHhhcC-CCC--ceEEecCCCCCHHHHH
Confidence 4678999989998888623332 3333322 1111123455555555555443 443 3333 333334444
Q ss_pred HHHHcCC-cEEec
Q 032392 115 QAIEMGS-TSVRI 126 (142)
Q Consensus 115 ~a~~~g~-t~VR~ 126 (142)
..++.+. ++|++
T Consensus 314 ~~i~~~a~d~v~i 326 (408)
T TIGR01502 314 FFTDAKAGHMVQI 326 (408)
T ss_pred HHHHhCCCCEEEe
Confidence 4444333 55554
No 150
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=27.92 E-value=71 Score=25.38 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=16.8
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEE
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLV 30 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I 30 (142)
++.+++++++|.+.|.++| +++|+
T Consensus 140 ~~~s~~el~ai~~~a~~~g---l~lhm 163 (290)
T PF01212_consen 140 TVYSLEELRAISELAREHG---LPLHM 163 (290)
T ss_dssp B---HHHHHHHHHHHHHHT----EEEE
T ss_pred eeCCHHHHHHHHHHHHhCc---eEEEE
Confidence 4788999999999999987 56644
No 151
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.74 E-value=3.1e+02 Score=23.23 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEE----EeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC--CCCCcH
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQ----VNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTP 79 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~----v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~--~~~~~~ 79 (142)
-+.+.++++.+.+++.+.....+.++ ||.+. ..-.+....+..+.+.+. .+..|-+..+-.|++. ......
T Consensus 173 ~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLAS--pd~e~rekSv~~~~~eL~-rA~~LGa~~VV~HPGs~~~~~~~e 249 (413)
T PTZ00372 173 LSDETIDKFKENCKKYNYDPKFILPHGSYLINLAN--PDKEKREKSYDAFLDDLQ-RCEQLGIKLYNFHPGSTVGQCSKE 249 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEeecCceecCCC--CCHHHHHHHHHHHHHHHH-HHHHcCCCEEEECCCcCCCCCCHH
Confidence 35678888999998876212233332 34331 001111122345556666 6667888888888886 222235
Q ss_pred HHHHHHHHHHHHHHH
Q 032392 80 ENFRTLLNCRAEVCK 94 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~ 94 (142)
+.++++.+.++.+.+
T Consensus 250 e~i~~i~e~L~~~la 264 (413)
T PTZ00372 250 EGIKNIADCINKAHE 264 (413)
T ss_pred HHHHHHHHHHHHHHh
Confidence 577777776665543
No 152
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=27.57 E-value=2.7e+02 Score=20.90 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=37.5
Q ss_pred ecC-CHHHHHHHHHHH---HhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCC---eeEeeEeeecCC
Q 032392 4 GVG-NEKIANHLDKAV---SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN---LEFSGLMTIGMP 73 (142)
Q Consensus 4 svd-s~~~~~~l~~~a---~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~---l~l~Gl~th~~~ 73 (142)
++| +.+....|.+.. ...|+....+ |||-+-..+|. ++..++++.++..+|. |.+.||++-..+
T Consensus 18 ~Ld~~~~~~~~i~~~l~~W~~~G~~v~gi--QIDfDa~t~~L----~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~ 88 (181)
T PF11340_consen 18 RLDWPEQVLARILQLLQRWQAAGNNVAGI--QIDFDAATSRL----PAYAQFLQQLRQRLPPDYRLSITALPDWLSS 88 (181)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCceEE--EEecCccccch----HHHHHHHHHHHHhCCCCceEeeEEehhhhcC
Confidence 445 566665555543 2334334455 66655223443 3567788888647775 999999875544
No 153
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.53 E-value=2.6e+02 Score=20.85 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHH
Q 032392 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLN 87 (142)
Q Consensus 8 ~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~ 87 (142)
.+.+...-+.+++.| ..| .++.- .-+..+++.+.++++.+. +. +.....|-=..+. -...+ +.+
T Consensus 107 ~~~~~~~v~~ak~~g---~~v--~~~~~---~~~~~~~~~~~~~~~~~~-~~-g~~~i~l~Dt~G~---~~P~~---v~~ 170 (237)
T PF00682_consen 107 LERIEEAVKYAKELG---YEV--AFGCE---DASRTDPEELLELAEALA-EA-GADIIYLADTVGI---MTPED---VAE 170 (237)
T ss_dssp HHHHHHHHHHHHHTT---SEE--EEEET---TTGGSSHHHHHHHHHHHH-HH-T-SEEEEEETTS----S-HHH---HHH
T ss_pred HHHHHHHHHHHHhcC---Cce--EeCcc---ccccccHHHHHHHHHHHH-Hc-CCeEEEeeCccCC---cCHHH---HHH
Confidence 344455555666655 344 34432 223457788899999887 55 3444444312221 11222 344
Q ss_pred HHHHHHHHhCCCCCCCeEEecCchh-----HHHHHHcCCcEEecCccccC
Q 032392 88 CRAEVCKALGMAEDQCELSMGMSGD-----FEQAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~lS~G~s~~-----~~~a~~~g~t~VR~G~~ifg 132 (142)
++..+++.++- . ...++..+... ...|.+.|.+.|-....=+|
T Consensus 171 lv~~~~~~~~~-~-~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG 218 (237)
T PF00682_consen 171 LVRALREALPD-I-PLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLG 218 (237)
T ss_dssp HHHHHHHHSTT-S-EEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGS
T ss_pred HHHHHHHhccC-C-eEEEEecCCccchhHHHHHHHHcCCCEEEccCccCC
Confidence 55556665441 1 23344433322 34567889998755444444
No 154
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.48 E-value=2.7e+02 Score=20.94 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccC-CChhhHHHHHHHHHccCCCeeE
Q 032392 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSG-IDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G-~~~~~~~~l~~~i~~~~~~l~l 64 (142)
++++.+.|++.| +.+.++--...+..+.. .+++++.++++.+ ..|++.+
T Consensus 125 l~~l~~~A~~~g---i~l~lE~~~~~~~~~~~l~t~~~~~~li~~v--~~~~~~i 174 (254)
T TIGR03234 125 LRYAADALDRIG---LTLLIEPINSFDMPGFFLTTTEQALAVIDDV--GRENLKL 174 (254)
T ss_pred HHHHHHHHHhcC---CEEEEEECCcccCCCChhcCHHHHHHHHHHh--CCCCEeE
Confidence 455666676655 56666632111122333 4667778888777 3566543
No 155
>PLN02591 tryptophan synthase
Probab=27.43 E-value=2.3e+02 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=23.8
Q ss_pred ccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 40 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 40 R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
+-|++.+++.++++.++ +...+-+. +|+|.-.
T Consensus 58 ~~G~~~~~~~~~~~~~r-~~~~~p~i-lm~Y~N~ 89 (250)
T PLN02591 58 EKGTTLDSVISMLKEVA-PQLSCPIV-LFTYYNP 89 (250)
T ss_pred HcCCCHHHHHHHHHHHh-cCCCCCEE-EEecccH
Confidence 46788888888888887 55556655 9998753
No 156
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=27.32 E-value=1.3e+02 Score=24.49 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.1
Q ss_pred EEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE-eeEee-ecCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q 032392 30 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF-SGLMT-IGMP-DYTSTPENFRTLLNCRAEVCKALGMAEDQCELS 106 (142)
Q Consensus 30 I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l-~Gl~t-h~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS 106 (142)
|-+.+| .|--.-|+++.++++...++. .+-+ -||.| |.-. ..-.+...|.-+.+.+..+++. |++. +.|+.
T Consensus 116 VGLsIg---TRPDClpd~VldlL~e~~~r~-~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkr-gIkv-c~HiI 189 (312)
T COG1242 116 VGLSIG---TRPDCLPDDVLDLLAEYNKRY-EVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKR-GIKV-CTHLI 189 (312)
T ss_pred eEEeec---CCCCCCcHHHHHHHHHHhhhe-EEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHc-CCeE-EEEEe
Confidence 466677 578888899999888875232 2222 26665 2211 0000124566678888888887 8764 56666
Q ss_pred ec
Q 032392 107 MG 108 (142)
Q Consensus 107 ~G 108 (142)
.|
T Consensus 190 ~G 191 (312)
T COG1242 190 NG 191 (312)
T ss_pred eC
Confidence 65
No 157
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=26.82 E-value=4.5e+02 Score=23.26 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=30.9
Q ss_pred ecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC--hhhHHHHHHHHH
Q 032392 4 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID--PSSCLGIVEHVR 56 (142)
Q Consensus 4 svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~--~~~~~~l~~~i~ 56 (142)
.|...+.++.|.++..+.| .|-+|||+-| .+|.+ .+...+-++.+.
T Consensus 208 ~vtp~~i~~~l~~~~e~l~-lph~~h~H~n------nlg~pgn~~~t~~t~~~~~ 255 (556)
T TIGR03121 208 GITPREIIKGLARANEELG-LPHSIHVHCN------NLGVPGNYETTLDTLDAAE 255 (556)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCceEEEecC------CCCCCCchHHHHHHHHHhc
Confidence 3667788899999999998 7888877743 45553 233344444443
No 158
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.58 E-value=3.1e+02 Score=21.36 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=9.2
Q ss_pred CChhhHHHHHHHHH
Q 032392 43 IDPSSCLGIVEHVR 56 (142)
Q Consensus 43 ~~~~~~~~l~~~i~ 56 (142)
.+++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (273)
T cd07941 148 ANPEYALATLKAAA 161 (273)
T ss_pred CCHHHHHHHHHHHH
Confidence 35666677777765
No 159
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=26.50 E-value=4.1e+02 Score=22.68 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=54.8
Q ss_pred eEecCCH--HHHHHHHHHHHhcCCCCceEEEE-----EeCCCCCCccCCChhhHHHHHHHHHc--cCCC-eeEeeEeeec
Q 032392 2 VEGVGNE--KIANHLDKAVSNLGRKPLKVLVQ-----VNTSGEESKSGIDPSSCLGIVEHVRL--RCPN-LEFSGLMTIG 71 (142)
Q Consensus 2 i~svds~--~~~~~l~~~a~~~~~~~~~v~I~-----v~tg~~~~R~G~~~~~~~~l~~~i~~--~~~~-l~l~Gl~th~ 71 (142)
|.||.|. -.+++-=+.+.+.+ .+|+|+ ||-.+ +=+|+.|.++.+++..+.+ .+|. .-+-|== |+
T Consensus 16 i~SVCsahp~VieAAl~~a~~~~---~pvLiEAT~NQVdq~G--GYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggD-Hl 89 (421)
T PRK15052 16 ICSVCSAHPLVIEAALAFDLNST---RKVLIEATSNQVNQFG--GYTGMTPADFREFVYGIADKVGFPRERIILGGD-HL 89 (421)
T ss_pred eeeECCCCHHHHHHHHHHHhhcC---CcEEEEeccccccccC--CcCCCCHHHHHHHHHHHHHHcCCChhcEEeecC-CC
Confidence 4455543 33444334444433 577775 44332 3488999999999988752 3442 2222222 44
Q ss_pred CC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeE--Eec
Q 032392 72 MP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCEL--SMG 108 (142)
Q Consensus 72 ~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~l--S~G 108 (142)
+. -..+..++.+.-.+++...-++ |++ .-|| ||+
T Consensus 90 GPn~Wq~~pa~eAM~~A~~li~ayV~A-GF~--kIHLD~Sm~ 128 (421)
T PRK15052 90 GPNCWQQEPADAAMEKSVELVKAYVRA-GFS--KIHLDASMS 128 (421)
T ss_pred CCccccCCCHHHHHHHHHHHHHHHHHc-CCc--eEEecCCCC
Confidence 32 2234456777767777666565 887 6677 554
No 160
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.42 E-value=3.7e+02 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.4
Q ss_pred CeEEecCchhHHHHHHcCCcEEecCccc
Q 032392 103 CELSMGMSGDFEQAIEMGSTSVRIGSTI 130 (142)
Q Consensus 103 ~~lS~G~s~~~~~a~~~g~t~VR~G~~i 130 (142)
..+++|.+|+. |+.|+-+|++|--+
T Consensus 139 ~lVTfGI~Pt~---PeTGYGYIe~G~~~ 163 (333)
T COG0836 139 GIVTFGIPPTR---PETGYGYIETGESI 163 (333)
T ss_pred CEEEEecCCCC---CccCcceeecCccc
Confidence 46899999996 88999999999853
No 161
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=26.09 E-value=3e+02 Score=21.03 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 032392 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 55 (142)
Q Consensus 8 ~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i 55 (142)
.+++..+.+++.+.| +. +|+.+|| ...-|.+++++..+.+.+
T Consensus 135 ~e~i~~a~~~~~~ag---ad-fIKTsTG--~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 135 DEEKVKACEIAKEAG---AD-FVKTSTG--FSTGGATVEDVKLMRETV 176 (221)
T ss_pred HHHHHHHHHHHHHhC---CC-EEEcCCC--CCCCCCCHHHHHHHHHHh
Confidence 345566677776666 33 5565566 555677766655555544
No 162
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=25.75 E-value=1.7e+02 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCeE-EecCchhHHH---HHHcCCcEEecCc
Q 032392 80 ENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSGDFEQ---AIEMGSTSVRIGS 128 (142)
Q Consensus 80 ~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~~~~~---a~~~g~t~VR~G~ 128 (142)
...+|..+.+..|++++|-+. .-|| +-|.+.+-.. ..++|.|+||.=-
T Consensus 91 ~~ieR~~~~ir~LK~efG~~f-HiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp 142 (353)
T COG2108 91 LEIERTVEYIRLLKDEFGEDF-HIHLYTTGILATEEALKALAEAGLDEIRFHP 142 (353)
T ss_pred HHHHHHHHHHHHHHHhhccce-eEEEeeccccCCHHHHHHHHhCCCCeEEecC
Confidence 457778888888888888652 1233 3366666444 3578999999643
No 163
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=25.67 E-value=3.7e+02 Score=23.14 Aligned_cols=93 Identities=20% Similarity=0.424 Sum_probs=52.7
Q ss_pred HHHhcCCCCceEEEEEeCCCCCCccC--CChhhHHHHHHHHHccCCCeeE--eeEeeecCCCCCCcHHHHHHHHHHHHHH
Q 032392 17 AVSNLGRKPLKVLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEF--SGLMTIGMPDYTSTPENFRTLLNCRAEV 92 (142)
Q Consensus 17 ~a~~~~~~~~~v~I~v~tg~~~~R~G--~~~~~~~~l~~~i~~~~~~l~l--~Gl~th~~~~~~~~~~~~~~~~~~~~~l 92 (142)
.|.+.| .+++=.|-+|.. |-.| .+++++..++..+. . .||++ .-|+. +.-++. ..|..+.++....
T Consensus 219 ~A~~~~-~kVkGvlitNPs---NPLG~~~~~e~L~~ll~Fa~-~-kniHvI~DEIya--~sVF~~--~~F~Sv~ev~~~~ 288 (471)
T KOG0256|consen 219 QARKLG-LKVKGVLITNPS---NPLGTTLSPEELISLLNFAS-R-KNIHVISDEIYA--GSVFDK--SEFRSVLEVRKDP 288 (471)
T ss_pred HHHHhC-CceeEEEEeCCC---CCCCCccCHHHHHHHHHHHh-h-cceEEEeehhhc--ccccCc--cCceEHHHHhhcc
Confidence 344456 678888888887 7788 47789999999886 3 45554 33322 111111 1344444443332
Q ss_pred HHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCcc
Q 032392 93 CKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 129 (142)
Q Consensus 93 ~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ 129 (142)
. .++...|+-.+-|-| .|.--.|+|+.
T Consensus 289 ~----~~~~rvHivyslSKD------~GlpGfRvGvi 315 (471)
T KOG0256|consen 289 H----LDPDRVHIVYSLSKD------FGLPGFRVGVI 315 (471)
T ss_pred c----cCCCcEEEEEEeccc------cCCCceEEEEE
Confidence 1 122234555566655 57777788763
No 164
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.56 E-value=1.9e+02 Score=23.39 Aligned_cols=13 Identities=0% Similarity=-0.215 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHHH
Q 032392 44 DPSSCLGIVEHVR 56 (142)
Q Consensus 44 ~~~~~~~l~~~i~ 56 (142)
+.+.+.++.+.+.
T Consensus 266 ~~~~l~~L~~~l~ 278 (331)
T TIGR00238 266 RAQILAKLSIALF 278 (331)
T ss_pred CHHHHHHHHHHHh
Confidence 3455677777665
No 165
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=25.27 E-value=1.2e+02 Score=22.89 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEec---CchhHHHHHHcCCcEEecCccccCCCcccc
Q 032392 83 RTLLNCRAEVCKALGMAEDQCELSMG---MSGDFEQAIEMGSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 83 ~~~~~~~~~l~~~~g~~~~~~~lS~G---~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~ 138 (142)
+.+.+++..++++| .+-|+ .-.+...|.+.|.|.| ||.|+|+.+|..
T Consensus 79 ~~l~~li~~i~~~~-------~l~MADist~ee~~~A~~~G~D~I--~TTLsGYT~~t~ 128 (192)
T PF04131_consen 79 ETLEELIREIKEKY-------QLVMADISTLEEAINAAELGFDII--GTTLSGYTPYTK 128 (192)
T ss_dssp S-HHHHHHHHHHCT-------SEEEEE-SSHHHHHHHHHTT-SEE--E-TTTTSSTTST
T ss_pred cCHHHHHHHHHHhC-------cEEeeecCCHHHHHHHHHcCCCEE--EcccccCCCCCC
Confidence 56778888888763 24443 3344445678899987 788999998864
No 166
>PRK13772 formimidoylglutamase; Provisional
Probab=25.17 E-value=3.6e+02 Score=21.58 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
||+ +.-.|+++.++.++++.+. ..+.+.-..|+-+-+.
T Consensus 258 vgt-P~pgGlt~~e~~~il~~l~-~~~~v~g~DvvEv~P~ 295 (314)
T PRK13772 258 VSA-PAAYGVPLPVVEEIVLHVR-ASGKLRVADLAEYNPQ 295 (314)
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-hcCCeeEEEEEEECCC
Confidence 455 6778999999999999986 5554444444555554
No 167
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.13 E-value=3.4e+02 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=18.3
Q ss_pred CChhhHHHHHHHHHccCCCeeEeeEeeec
Q 032392 43 IDPSSCLGIVEHVRLRCPNLEFSGLMTIG 71 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~~~l~l~Gl~th~ 71 (142)
..|+++.++++.++ +.+++.+ |+|+|.
T Consensus 189 l~P~~v~~Lv~alk-~~~~~pi-~~H~Hn 215 (468)
T PRK12581 189 LTPKAAKELVSGIK-AMTNLPL-IVHTHA 215 (468)
T ss_pred cCHHHHHHHHHHHH-hccCCeE-EEEeCC
Confidence 36677788888777 6555553 677775
No 168
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=25.04 E-value=1.6e+02 Score=22.71 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=19.6
Q ss_pred CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 38 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 38 ~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
..-.|++++++.++++.+. ...++.-..|.-+.+.
T Consensus 222 p~pgGl~~~e~~~~l~~l~-~~~~vvg~di~E~~P~ 256 (277)
T PF00491_consen 222 PEPGGLSPRELLQLLRALA-RSGKVVGLDIVEYNPD 256 (277)
T ss_dssp -BSS-B-HHHHHHHHHHHH-HHSEEEEEEEE-B-GG
T ss_pred CcCCCCCHHHHHHHHHHHc-ccCCeEEEEEEEECCC
Confidence 3456899999999999986 5443433333445554
No 169
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.96 E-value=3e+02 Score=21.50 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=31.8
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~ 56 (142)
....++++++.+.++|.++| +. + . ---|++.+.+.++++.+.
T Consensus 158 ~Gl~~leE~~avA~aca~~g---~~--l--E-----PTGGIdl~Nf~~I~~i~l 199 (236)
T TIGR03581 158 GGLKHLEEYAAVAKACAKHG---FY--L--E-----PTGGIDLDNFEEIVQIAL 199 (236)
T ss_pred CCcccHHHHHHHHHHHHHcC---Cc--c--C-----CCCCccHHhHHHHHHHHH
Confidence 45788999999999999987 22 2 1 124789889988888775
No 170
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.80 E-value=1.2e+02 Score=23.68 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=5.4
Q ss_pred CChhhHHHHHHHH
Q 032392 43 IDPSSCLGIVEHV 55 (142)
Q Consensus 43 ~~~~~~~~l~~~i 55 (142)
++|+++.++++.+
T Consensus 245 l~p~~l~~lv~~i 257 (260)
T TIGR01361 245 LTPEEFKRLVKEL 257 (260)
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 171
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=24.70 E-value=3.6e+02 Score=24.11 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCC----CCccCCChhhH-HHHHHHHHccCCCeeEeeE-eeecCCCCCCcHHHH
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPSSC-LGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENF 82 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~----~~R~G~~~~~~-~~l~~~i~~~~~~l~l~Gl-~th~~~~~~~~~~~~ 82 (142)
+....+-+.|+++| .+ +-|=+|.|-- ++|+|-.++.+ ...++.++ -|..+.+.-+ +++-+.+.....+++
T Consensus 145 e~~~~vV~~ake~~-~~--IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~-i~e~~~f~diviS~KsSnv~~mi~Ay 220 (606)
T PRK00694 145 EKFSPLVEKCKRLG-KA--MRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIE-VCEKLDYRDVVFSMKSSNPKVMVAAY 220 (606)
T ss_pred HHHHHHHHHHHHCC-CC--EEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHH-HHHHCCCCcEEEEEEcCCHHHHHHHH
Confidence 34555667777776 44 5448887632 35788666543 23334443 3334444444 666654433334566
Q ss_pred HHHHHH
Q 032392 83 RTLLNC 88 (142)
Q Consensus 83 ~~~~~~ 88 (142)
+.+.+.
T Consensus 221 rlLa~~ 226 (606)
T PRK00694 221 RQLAKD 226 (606)
T ss_pred HHHHHH
Confidence 655443
No 172
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=23.84 E-value=91 Score=18.71 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=20.4
Q ss_pred CCChhhHHHHHHHHHccCCCeeEeeE
Q 032392 42 GIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 42 G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
-++.+|-..+.+.++ .+|++.+.+|
T Consensus 31 ~F~L~Dy~~L~~~~~-~l~~V~l~pl 55 (55)
T PF07443_consen 31 NFSLEDYSTLMKKVR-NLPQVQLEPL 55 (55)
T ss_pred eeeHHHHHHHHHHHh-cCCceEeeCC
Confidence 356788889999999 8999988764
No 173
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.73 E-value=3.5e+02 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=5.9
Q ss_pred ChhhHHHHHHHHH
Q 032392 44 DPSSCLGIVEHVR 56 (142)
Q Consensus 44 ~~~~~~~l~~~i~ 56 (142)
.|.++.++++.++
T Consensus 182 ~P~~~~~LV~~Lk 194 (499)
T PRK12330 182 KPQPAYDIVKGIK 194 (499)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444443
No 174
>PRK05409 hypothetical protein; Provisional
Probab=23.68 E-value=3.3e+02 Score=21.79 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE-eeecCCCCCCcHHHHHHHHHHHHHH
Q 032392 28 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENFRTLLNCRAEV 92 (142)
Q Consensus 28 v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl-~th~~~~~~~~~~~~~~~~~~~~~l 92 (142)
=+++|-+..=+...|...+. ++.++..+| +.+.|+ +++++.+. ....-.++++.+.+++
T Consensus 29 df~Ev~~EN~~~~gg~~~~~----L~~i~e~~P-v~~HGv~LslGs~~~-ld~~~L~~l~~l~~~~ 88 (281)
T PRK05409 29 DFFEVHPENYMGAGGPPLAQ----LDAIRERYP-LSLHGVSLSLGGAAP-LDKDHLKRLKALADRY 88 (281)
T ss_pred CEEEECcccccCcCCchHHH----HHHHHhcCC-EEEcccccccCCCCC-CCHHHHHHHHHHHHHH
Confidence 37888887666666655444 333332566 888999 88887531 2234555666655554
No 175
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.61 E-value=3.4e+02 Score=20.73 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHH
Q 032392 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~ 85 (142)
+..+....+-+.+.++| +++.+-|+..+ +++.+..++ . ..+++-+-|+.--+++ ..... +
T Consensus 113 e~~~~~~~~~~~~~~~G---l~~~~~v~p~T-------~~e~l~~~~---~-~~~~~l~msv~~~~g~---~~~~~---~ 172 (244)
T PRK13125 113 DYPDDLEKYVEIIKNKG---LKPVFFTSPKF-------PDLLIHRLS---K-LSPLFIYYGLRPATGV---PLPVS---V 172 (244)
T ss_pred CcHHHHHHHHHHHHHcC---CCEEEEECCCC-------CHHHHHHHH---H-hCCCEEEEEeCCCCCC---CchHH---H
Confidence 44566777777777777 45556677663 223333333 3 4556654344322222 12211 2
Q ss_pred HHHHHHHHHHhCCCCCCCeE-EecC-ch-hHHHHHHcCCcEEecCccccC
Q 032392 86 LNCRAEVCKALGMAEDQCEL-SMGM-SG-DFEQAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 86 ~~~~~~l~~~~g~~~~~~~l-S~G~-s~-~~~~a~~~g~t~VR~G~~ifg 132 (142)
.+.++++++. ..+ .+.+ =.|. ++ +.....+.|.|.+=+|+++|.
T Consensus 173 ~~~i~~lr~~-~~~--~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 173 ERNIKRVRNL-VGN--KYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHHh-cCC--CCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 2233344443 111 2333 3455 33 333345889999999999985
No 176
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=23.59 E-value=2.7e+02 Score=20.12 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 032392 44 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMA 99 (142)
Q Consensus 44 ~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 99 (142)
....+.++++.+-+.++.++..=|.|-. |.....+|-+.|.++.+.|.+. |+.
T Consensus 34 Qi~Nl~~F~El~vk~~~~~~~i~LvT~~--d~~~~~~Q~~~l~~i~~sl~~~-gI~ 86 (148)
T cd02685 34 QIRNFLRFCELVVKPPCELKYIHLVTGE--DEDNGKQQIEALEEIKQSLASH-GVE 86 (148)
T ss_pred HHHHHHHHHHHHhcCccceEEEEEEecC--CCCCHHHHHHHHHHHHHHHHhC-CcE
Confidence 3456778888764267777776676654 3334458888899999998875 764
No 177
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=23.18 E-value=3.7e+02 Score=21.08 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=22.3
Q ss_pred CCeE-EecCc--hhHHHHHHc-CCcEEecCccccCCC
Q 032392 102 QCEL-SMGMS--GDFEQAIEM-GSTSVRIGSTIFGPR 134 (142)
Q Consensus 102 ~~~l-S~G~s--~~~~~a~~~-g~t~VR~G~~ifg~~ 134 (142)
++.+ |.|.+ .|....... |..-+=+|.++|--+
T Consensus 192 ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~ 228 (241)
T COG0106 192 IPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGK 228 (241)
T ss_pred cCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCC
Confidence 4556 55543 455555566 899999999998654
No 178
>PTZ00124 adenosine deaminase; Provisional
Probab=23.14 E-value=4.1e+02 Score=21.91 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEecCc--hh----HHHHH-HcCCcEEecCccccCC
Q 032392 82 FRTLLNCRAEVCKALGMAEDQCELSMGMS--GD----FEQAI-EMGSTSVRIGSTIFGP 133 (142)
Q Consensus 82 ~~~~~~~~~~l~~~~g~~~~~~~lS~G~s--~~----~~~a~-~~g~t~VR~G~~ifg~ 133 (142)
+..|..+++..++. |+. ..+++|=+ +. ...++ ..|.+-|-=|+.+..+
T Consensus 205 ~~~f~~~f~~Ar~~-Gl~---~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~~d 259 (362)
T PTZ00124 205 LKPFKDIFDYVREA-GVN---LTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVAES 259 (362)
T ss_pred cHHHHHHHHHHHHC-CCC---EEEEeCCCCCCCcchhHHHHHHHhCCCccccccccCCC
Confidence 35567777777765 874 67888843 21 12233 4566655556555543
No 179
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=22.92 E-value=2.4e+02 Score=22.17 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=42.4
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCCChhhHHHHHHHHHccCCCeeEeeE-eeecCC
Q 032392 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMP 73 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~-~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl-~th~~~ 73 (142)
+-|+|.++|.+..++ |..-+..|+-++||+. -.|.|.+.+++.++++.+.+...+++=+=| .+|++.
T Consensus 161 ~yV~s~~eAqa~~~a----Gadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGP 229 (276)
T COG5564 161 PYVFSFEEAQAMTKA----GADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGP 229 (276)
T ss_pred ceecCHHHHHHHHHc----CcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCC
Confidence 457888888777666 4345777888888632 135666777888887766423334443334 667776
No 180
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=22.82 E-value=2.6e+02 Score=23.18 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCChhhHHHHHHHHHccCCCeeEeeEe-eecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHH-----
Q 032392 42 GIDPSSCLGIVEHVRLRCPNLEFSGLM-TIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ----- 115 (142)
Q Consensus 42 G~~~~~~~~l~~~i~~~~~~l~l~Gl~-th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~----- 115 (142)
|++++++.+++..+. . .++.+..-= ..+.+.+.+..+-.+.+.+.+++.+++.|-. ....++.|.+...
T Consensus 137 GL~~~~~a~~~~~~~-~-gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~---~~y~~Nita~~~em~~ra 211 (364)
T cd08210 137 GLSAAELAELAYAFA-L-GGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGR---TLYAPNVTGPPTQLLERA 211 (364)
T ss_pred cCCHHHHHHHHHHHH-h-cCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCc---ceEEEecCCCHHHHHHHH
Confidence 999999988888775 3 344443221 1222345556677777888888777665643 3345555544332
Q ss_pred --HHHcCCcEEecCccccC
Q 032392 116 --AIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 116 --a~~~g~t~VR~G~~ifg 132 (142)
+.+.|.+.+=+--..+|
T Consensus 212 ~~a~~~Ga~~vMv~~~~~G 230 (364)
T cd08210 212 RFAKEAGAGGVLIAPGLTG 230 (364)
T ss_pred HHHHHcCCCEEEeecccch
Confidence 34566654444344443
No 181
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=22.81 E-value=2.5e+02 Score=22.52 Aligned_cols=82 Identities=5% Similarity=0.018 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCC-Ch----hhHHHHHHHHHccCCCeeEe---eEeeecCCCCCCc
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI-DP----SSCLGIVEHVRLRCPNLEFS---GLMTIGMPDYTST 78 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~-~~----~~~~~l~~~i~~~~~~l~l~---Gl~th~~~~~~~~ 78 (142)
..+.++.+.+.+++.+ . ++.++ .+.-.+ ++- .+ ..+..+...+. .+..+-+. .+-.|++..+...
T Consensus 89 ~~~~~~~~g~~~~~~~-i--rls~H--p~y~in-L~S~~~ev~e~Si~~L~~~~~-~~~~lG~~~~~~vViHpG~~~~~k 161 (303)
T PRK02308 89 FKEELREIGEFIKEHN-I--RLSFH--PDQFVV-LNSPKPEVVENSIKDLEYHAK-LLDLMGIDDSSKINIHVGGAYGDK 161 (303)
T ss_pred CHHHHHHHHHHHHHcC-C--Ceecc--Chhhhc-CCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCEEEECCCccCCCH
Confidence 3567788888888876 3 44334 222111 222 22 22345555555 44555566 6767777644444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032392 79 PENFRTLLNCRAEVCKA 95 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~ 95 (142)
...+++|.+.++.+-+.
T Consensus 162 e~al~r~~~~l~~l~~~ 178 (303)
T PRK02308 162 EKALERFIENIKKLPES 178 (303)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 56788888877776554
No 182
>PRK05588 histidinol-phosphatase; Provisional
Probab=22.61 E-value=3.5e+02 Score=20.59 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHH-HHHH
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR-TLLN 87 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~-~~~~ 87 (142)
..++++-+++.+.| +.|+|||+. ..+ +........+++... ... .. ++|.++. +.....+. .+.+
T Consensus 166 ~~~~~il~~~~~~g-----~~lEINt~~-l~~-~~~~~~~~~~l~~~~-~~g-~~---~i~lgSD--AH~~~~vg~~~~~ 231 (255)
T PRK05588 166 EIIDEILKVLIEKE-----KVLEINTRR-LDD-KRSVENLVKIYKRFY-ELG-GK---YITLGSD--AHNIEDIGNNFKF 231 (255)
T ss_pred HHHHHHHHHHHHcC-----CEEEEECcc-cCC-CCCCCCHHHHHHHHH-HcC-Cc---EEEEECC--CCCHHHHHhhHHH
Confidence 34455556665554 677999974 333 322223355666665 443 11 2566642 22333332 4566
Q ss_pred HHHHHHHHhCCC
Q 032392 88 CRAEVCKALGMA 99 (142)
Q Consensus 88 ~~~~l~~~~g~~ 99 (142)
+.+.+++. |++
T Consensus 232 ~~~~l~~~-G~~ 242 (255)
T PRK05588 232 ALEIAEYC-NLK 242 (255)
T ss_pred HHHHHHHc-CCE
Confidence 66666664 763
No 183
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=22.47 E-value=2.2e+02 Score=23.54 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchhHHHH---HHcCCcEEecCcc
Q 032392 87 NCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGST 129 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a---~~~g~t~VR~G~~ 129 (142)
+.+..+++.++ + ..+-+|+-.+++.+ ++.|.+.||+|+.
T Consensus 138 ~~ik~ik~~~~-~---~~viaGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 138 DMIKKIKKKFP-D---VPVIAGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHST-T---SEEEEEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHhCC-C---ceEEecccCCHHHHHHHHHcCCCEEEEecc
Confidence 34556777743 2 34668888777765 6889999999964
No 184
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=22.43 E-value=1.2e+02 Score=25.66 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCC
Q 032392 5 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI 43 (142)
Q Consensus 5 vds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~ 43 (142)
+-+.+.++++.++|.++| .+=|+=+|-|| ++|+|-
T Consensus 201 ~~~~~fl~~lr~lCd~~g--~LLI~DEVQtG--~GRTGk 235 (404)
T COG4992 201 PAPPEFLKALRELCDEHG--ALLILDEVQTG--LGRTGK 235 (404)
T ss_pred CCCHHHHHHHHHHHHHhC--eEEEEeccccC--CCccch
Confidence 346788999999999986 46666677799 899993
No 185
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=22.38 E-value=2.6e+02 Score=18.92 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCCCccCCCh--hhHHHHHHHHHccCCCeeEeeEee
Q 032392 27 KVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 27 ~v~I~v~tg~~~~R~G~~~--~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+|+|=||+. +++|... +++.++.+... . .+|++.|+=|
T Consensus 22 kv~LIVNvA---s~Cg~t~qy~~L~~L~~ky~-~-~gl~ILaFPc 61 (108)
T PF00255_consen 22 KVLLIVNVA---SKCGYTKQYKQLNELYEKYK-D-KGLEILAFPC 61 (108)
T ss_dssp SEEEEEEEE---SSSTTHHHHHHHHHHHHHHG-G-GTEEEEEEEB
T ss_pred CEEEEEecc---cccCCccccHHHHHHHHHHh-c-CCeEEEeeeh
Confidence 577779999 8999876 33444444443 2 3788777744
No 186
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.30 E-value=2.5e+02 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=24.2
Q ss_pred ccCCChhhHHHHHHHHHccCCCeeEeeEeeecC
Q 032392 40 KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM 72 (142)
Q Consensus 40 R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~ 72 (142)
+.|+..+++.++++.++ +.+++-+. ||+|.-
T Consensus 71 ~~g~~~~~~~~~~~~~r-~~~~~p~v-lm~Y~N 101 (263)
T CHL00200 71 KQGINLNKILSILSEVN-GEIKAPIV-IFTYYN 101 (263)
T ss_pred HcCCCHHHHHHHHHHHh-cCCCCCEE-EEeccc
Confidence 56888888889999887 65666665 999884
No 187
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=22.10 E-value=51 Score=21.89 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.6
Q ss_pred CChhhHHHHHHHHHccC
Q 032392 43 IDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 43 ~~~~~~~~l~~~i~~~~ 59 (142)
|+++++.++++.+. .+
T Consensus 84 IP~Ee~l~l~~~l~-e~ 99 (107)
T PF03646_consen 84 IPPEELLDLAKRLR-EL 99 (107)
T ss_dssp E-HHHHHHHHHHHH-HH
T ss_pred CCcHHHHHHHHHHH-HH
Confidence 68899999999987 54
No 188
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=21.79 E-value=2.5e+02 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 44 DPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 44 ~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
+.+++..++-.+ ..|.+++.||-|..++
T Consensus 13 d~DDa~Al~lal--~~p~~el~gIt~v~GN 40 (318)
T cd02654 13 DTDDGLALALLL--WSPEVELLGLSAVSGN 40 (318)
T ss_pred CccHHHHHHHHh--hCCCceEEEEEEecCC
Confidence 446766666544 4688999999887775
No 189
>PRK06740 histidinol-phosphatase; Validated
Probab=21.73 E-value=4.4e+02 Score=21.34 Aligned_cols=76 Identities=8% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHH-HHH
Q 032392 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFR-TLL 86 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~-~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~-~~~ 86 (142)
+..+++.+++++.| +.|+|||+.+ -|-+.. +---..+++.+. +. ++. +++++ | +...+... .+.
T Consensus 239 ~~~~~I~~a~~~~g-----~~lEINt~~~-~r~~~~e~yP~~~il~~~~-e~-Gv~----~tlgS-D-AH~p~~VG~~~~ 304 (331)
T PRK06740 239 SYYKEIARALVETN-----TATEINAGLY-YRYPVREMCPSPLFLQVLA-KH-EVP----ITLSS-D-AHYPNDLGKYVE 304 (331)
T ss_pred HHHHHHHHHHHHcC-----CEEEEECccc-cCCCCCCCCcCHHHHHHHH-HC-CCe----EEEee-C-CCCHHHHHhHHH
Confidence 35566666666654 6779999742 243431 111135666666 55 233 34443 1 12222222 223
Q ss_pred HHHHHHHHHhCCC
Q 032392 87 NCRAEVCKALGMA 99 (142)
Q Consensus 87 ~~~~~l~~~~g~~ 99 (142)
++.+.+++. |++
T Consensus 305 ~a~~~l~~~-G~~ 316 (331)
T PRK06740 305 ENVKTLRNH-GVT 316 (331)
T ss_pred HHHHHHHHc-CCc
Confidence 455556654 864
No 190
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.24 E-value=3e+02 Score=19.34 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCe
Q 032392 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 62 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l 62 (142)
.++.+.+.+++.| +.+.++-..+. ........+++.++++.+. .|++
T Consensus 113 ~l~~l~~~a~~~g---v~i~lE~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~ 159 (213)
T PF01261_consen 113 NLRELAEIAEEYG---VRIALENHPGP-FSETPFSVEEIYRLLEEVD--SPNV 159 (213)
T ss_dssp HHHHHHHHHHHHT---SEEEEE-SSSS-SSSEESSHHHHHHHHHHHT--TTTE
T ss_pred HHHHHHhhhhhhc---ceEEEecccCc-cccchhhHHHHHHHHhhcC--CCcc
Confidence 4566667777766 66766744442 1112233477888888773 4553
No 191
>PRK01242 rpl39e 50S ribosomal protein L39e; Validated
Probab=21.15 E-value=1.6e+02 Score=17.35 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCC
Q 032392 13 HLDKAVSNLGRKPLKVLVQVNTSG 36 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~ 36 (142)
.|++...+ + .++|.+|.+.|+.
T Consensus 11 rLaK~~kQ-N-rpvP~Wv~~KT~~ 32 (50)
T PRK01242 11 RLAKALKQ-N-RRVPAWVIVKTNR 32 (50)
T ss_pred HHHHHHhc-c-CCCCeEEEEEcCC
Confidence 45555554 3 8999999999994
No 192
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.03 E-value=2.1e+02 Score=17.45 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=40.0
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCC----ChhhHHHHHHHHHccCCCeeEeeEeee
Q 032392 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGI----DPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~-~~R~G~----~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.+..|...+-+..+.+++.| .+.++ +-+-.+ ..-+|+ ++++...+.+.++ +. ++.+.|++..
T Consensus 5 ~i~F~st~~a~~~ek~lk~~g-i~~~l---iP~P~~i~~~CG~al~~~~~d~~~i~~~l~-~~-~i~~~~iy~~ 72 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNG-IPVRL---IPTPREISAGCGLALRFEPEDLEKIKEILE-EN-GIEYEGIYEI 72 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCC-CcEEE---eCCChhccCCCCEEEEEChhhHHHHHHHHH-HC-CCCeeEEEEe
Confidence 567889999999999999876 33332 221100 122664 4566666666665 44 6999998753
No 193
>PRK08444 hypothetical protein; Provisional
Probab=20.98 E-value=4.7e+02 Score=21.43 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEee
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 66 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~G 66 (142)
|.+++.+..+.+.+.| --.++|. +|.... .+.+...++++.+++.+|++.+.+
T Consensus 81 s~eeI~~~a~~a~~~G--~~ei~iv--~G~~p~---~~~e~y~e~ir~Ik~~~p~i~i~a 133 (353)
T PRK08444 81 SHEEILEIVKNSVKRG--IKEVHIV--SAHNPN---YGYEWYLEIFKKIKEAYPNLHVKA 133 (353)
T ss_pred CHHHHHHHHHHHHHCC--CCEEEEe--ccCCCC---CCHHHHHHHHHHHHHHCCCceEee
Confidence 4566666555665655 2456665 553222 255778899999974578888875
No 194
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.83 E-value=3.8e+02 Score=20.28 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCceEEEEE-eCCCCCCccCCChhhHHHHHHHHHccCCCee
Q 032392 11 ANHLDKAVSNLGRKPLKVLVQV-NTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 63 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v-~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~ 63 (142)
+..+.+.|++.| +++.++- |.-.-.+.+.-+++++.++++.+. .|++.
T Consensus 126 l~~l~~~a~~~G---v~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~--~~~v~ 174 (258)
T PRK09997 126 LRYAANMLMKED---ILLLIEPINHFDIPGFHLTGTRQALKLIDDVG--CCNLK 174 (258)
T ss_pred HHHHHHHHHHcC---CEEEEEeCCCcCCCCCccCCHHHHHHHHHHhC--CCCEE
Confidence 344555566655 5666663 321001223345667777777663 45544
No 195
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=20.77 E-value=2.1e+02 Score=21.64 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=17.5
Q ss_pred CCeEEecCchhHHHH-HHcCCcEEecCcc
Q 032392 102 QCELSMGMSGDFEQA-IEMGSTSVRIGST 129 (142)
Q Consensus 102 ~~~lS~G~s~~~~~a-~~~g~t~VR~G~~ 129 (142)
..-+|+|.|++.... .+.|+..||+|..
T Consensus 151 ylGtSFG~t~~Ll~FW~k~gf~pv~l~~~ 179 (196)
T PF13718_consen 151 YLGTSFGATPELLKFWQKNGFVPVYLGQT 179 (196)
T ss_dssp EEEEEEE--HHHHHHHHCTT-EEEEE-SS
T ss_pred EEEeccCCCHHHHHHHHHCCcEEEEEecC
Confidence 344599999987655 5779999999863
No 196
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=20.73 E-value=3.7e+02 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=27.1
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032392 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 25 ~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
.-.+|++..+.. .+..+.++.+. ..+.+.+.-||-|-+.
T Consensus 83 d~~~hlR~E~~~---------~~~~~~~~~~~-~~~~v~lvs~~dH~pg 121 (325)
T cd01306 83 DHRLHLRCELAD---------PAVLPELESLM-ADPRVHLVSLMDHTPG 121 (325)
T ss_pred hcceEEEEeecC---------ccHHHHHHHHh-cCCCcCEEEEeCCCCc
Confidence 456777777662 23445555556 7788999999999875
No 197
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.70 E-value=4.8e+02 Score=21.37 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHhcCCCCceEEEEEeCCCCCCccC-CChhhHHHHHHHHHccCCCeeEeeEeeecCC---CCCCc-------------
Q 032392 16 KAVSNLGRKPLKVLVQVNTSGEESKSG-IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTST------------- 78 (142)
Q Consensus 16 ~~a~~~~~~~~~v~I~v~tg~~~~R~G-~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~---~~~~~------------- 78 (142)
++.+++|...+++.|=+|.. ..| .+.+.+.+++++++ +. ++++- |=-|.|. |....
T Consensus 31 ~ilk~~G~N~vRlRvwv~P~----~~g~~~~~~~~~~akrak-~~-Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~ 103 (332)
T PF07745_consen 31 QILKDHGVNAVRLRVWVNPY----DGGYNDLEDVIALAKRAK-AA-GMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQ 103 (332)
T ss_dssp HHHHHTT--EEEEEE-SS-T----TTTTTSHHHHHHHHHHHH-HT-T-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHH
T ss_pred HHHHhcCCCeEEEEeccCCc----ccccCCHHHHHHHHHHHH-HC-CCeEE-EeecccCCCCCCCCCCCCccCCCCCHHH
Confidence 44455563356665555554 255 36788999999997 66 57764 4335554 21110
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032392 79 --PENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 79 --~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
...+....+..+.|++. |.. +..+..|+
T Consensus 104 l~~~v~~yT~~vl~~l~~~-G~~--pd~VQVGN 133 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAA-GVT--PDMVQVGN 133 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T----ESEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHC-CCC--ccEEEeCc
Confidence 14555566777788776 887 57777764
No 198
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=20.60 E-value=5e+02 Score=21.53 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.6
Q ss_pred CCeEEecCchhHH---HHHHcCCcEEecCccccCCCc
Q 032392 102 QCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 102 ~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg~~~ 135 (142)
++.+..|+-.++. ..+..|.+.|.+||++|...+
T Consensus 254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp 290 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGF 290 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCc
Confidence 6778666554444 346789999999999987444
No 199
>COG2167 RPL39 Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=1.7e+02 Score=17.27 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCC
Q 032392 12 NHLDKAVSNLGRKPLKVLVQVNTS 35 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg 35 (142)
..|+++..+ + .++|++|.+.|+
T Consensus 11 ~RLaKA~Kq-N-rrvP~Wv~~kT~ 32 (51)
T COG2167 11 LRLAKALKQ-N-RRVPVWVRVKTN 32 (51)
T ss_pred HHHHHHHHc-C-CCCCeEEEEecC
Confidence 346666655 4 799999999998
No 200
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.59 E-value=4.2e+02 Score=20.66 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccC
Q 032392 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~ 59 (142)
.+..+-+.+++.| +.|.+.+-. =++.+++.+.++++.+. ..
T Consensus 113 ~~~~~i~~a~~~G---~~v~~~~ed-----a~r~~~~~l~~~~~~~~-~~ 153 (262)
T cd07948 113 SAVEVIEFVKSKG---IEVRFSSED-----SFRSDLVDLLRVYRAVD-KL 153 (262)
T ss_pred HHHHHHHHHHHCC---CeEEEEEEe-----eCCCCHHHHHHHHHHHH-Hc
Confidence 3444445555555 344333322 25567888888888887 55
No 201
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.45 E-value=3.9e+02 Score=22.64 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=8.2
Q ss_pred CccCCChhhHHHHHHHHH
Q 032392 39 SKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 39 ~R~G~~~~~~~~l~~~i~ 56 (142)
+-|=++.++..++++.++
T Consensus 292 ~hFrv~~~~g~~I~~~lr 309 (417)
T TIGR03820 292 SHFRTPVGKGIEIIESLI 309 (417)
T ss_pred ccccCcHHHHHHHHHHHH
Confidence 334444444445554443
No 202
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=20.26 E-value=88 Score=18.23 Aligned_cols=16 Identities=13% Similarity=0.632 Sum_probs=12.0
Q ss_pred ccCCChhhHHHHHHHH
Q 032392 40 KSGIDPSSCLGIVEHV 55 (142)
Q Consensus 40 R~G~~~~~~~~l~~~i 55 (142)
-.|++|+.+...++.+
T Consensus 32 e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 32 ENGVNPEALAAVIKEL 47 (48)
T ss_pred HCCCCHHHHHHHHHHh
Confidence 4688888877777765
No 203
>PLN02615 arginase
Probab=20.22 E-value=4.8e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE--eeecCC
Q 032392 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL--MTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl--~th~~~ 73 (142)
||+ ..-.|+++.++.++++.+. . ++.|+ +-+.+.
T Consensus 278 tgt-pepgGLt~~e~l~il~~l~-~----~vvG~DvvEv~P~ 313 (338)
T PLN02615 278 VSH-IEPGGLSFRDVLNILHNLQ-G----DVVGADVVEFNPQ 313 (338)
T ss_pred CCC-CCCCCCCHHHHHHHHHHhh-C----CEEEEEEEEECCC
Confidence 454 5567899999999998776 3 56666 445554
No 204
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.16 E-value=4.5e+02 Score=20.86 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC---CCCCcHHHHH
Q 032392 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DYTSTPENFR 83 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~---~~~~~~~~~~ 83 (142)
+++.+..+-+...+. ..++|.+++..|. ...+ .+..++++.+. +.. +.+|..|+-. .+.. ..
T Consensus 115 ~~~~~~ei~~~vr~~--~~~pv~vKir~g~--~~~~---~~~~~~a~~l~-~~G---~d~i~vh~r~~~~~~~~-~~--- 179 (319)
T TIGR00737 115 DPDLIGKIVKAVVDA--VDIPVTVKIRIGW--DDAH---INAVEAARIAE-DAG---AQAVTLHGRTRAQGYSG-EA--- 179 (319)
T ss_pred CHHHHHHHHHHHHhh--cCCCEEEEEEccc--CCCc---chHHHHHHHHH-HhC---CCEEEEEcccccccCCC-ch---
Confidence 455555544444332 3466766776552 1111 23556777665 432 2223223321 1111 11
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEecCchhHHH---HH-HcCCcEEecCccccCCC
Q 032392 84 TLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ---AI-EMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~---a~-~~g~t~VR~G~~ifg~~ 134 (142)
..+.+..+++..+ ++.+..|.-.+... +. ..|.+.|-+|+.++.+.
T Consensus 180 -~~~~i~~i~~~~~----ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P 229 (319)
T TIGR00737 180 -NWDIIARVKQAVR----IPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNP 229 (319)
T ss_pred -hHHHHHHHHHcCC----CcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCC
Confidence 1334444555422 45665565544443 34 46899999999999863
No 205
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.05 E-value=78 Score=18.88 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.1
Q ss_pred CccCCChhhHHHHHHHH
Q 032392 39 SKSGIDPSSCLGIVEHV 55 (142)
Q Consensus 39 ~R~G~~~~~~~~l~~~i 55 (142)
.|||++++++.+.++.+
T Consensus 28 ~~~gvt~~~L~~AV~~v 44 (57)
T PF12244_consen 28 KRFGVTEEQLREAVRAV 44 (57)
T ss_pred HHHCcCHHHHHHHHHHH
Confidence 58999998888888765
No 206
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=20.01 E-value=3.2e+02 Score=22.47 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=27.7
Q ss_pred HHHHhcCCCCceEEEEEe---------CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032392 16 KAVSNLGRKPLKVLVQVN---------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 16 ~~a~~~~~~~~~v~I~v~---------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
++....|-+.+-+.|.|| ||+ .---|+++.++..++ + .|.+|++.|-
T Consensus 270 ~ir~~~G~k~vYiSiDID~LDPafAPgtgt-pE~gGlt~re~l~IL---r-glqGl~lVGa 325 (361)
T KOG2964|consen 270 RIRQRVGDKLVYISIDIDVLDPAFAPGTGT-PETGGLTTREMLNIL---R-GLQGLNLVGA 325 (361)
T ss_pred HHHHhcCCceEEEEEeecccCcccCCCCCC-CCCCCcCHHHHHHHH---h-hCcccccccc
Confidence 333333424566666776 454 333567776655554 4 6668999887
No 207
>PLN02411 12-oxophytodienoate reductase
Probab=20.00 E-value=5.1e+02 Score=21.48 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCCeE-EecCchhHH-HHHHcC-CcEEecCccccCCCcccc
Q 032392 88 CRAEVCKALGMAEDQCEL-SMGMSGDFE-QAIEMG-STSVRIGSTIFGPREYAK 138 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~l-S~G~s~~~~-~a~~~g-~t~VR~G~~ifg~~~~~~ 138 (142)
+.+.+++..+ .+.+ +.+.+++.. .+++.| .|+|-.|..+.-|-...+
T Consensus 304 ~a~~ik~~v~----~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~ 353 (391)
T PLN02411 304 LMRTLRRAYQ----GTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVL 353 (391)
T ss_pred HHHHHHHHcC----CCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHH
Confidence 4455666533 2445 444444322 246777 599999999887765543
Done!