BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032395
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
           Arginine Methyltransferase Prmt3
          Length = 321

 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104
           ++++Q  + F    V+++G GT +  + AAK G+   +  D + I
Sbjct: 35  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEI 79


>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
           Protein
 pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
 pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
           Allosteric Inhibitor (Prmt3- Ktd)
          Length = 340

 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104
           ++++Q  + F    V+++G GT +  + AAK G+   L  D + I
Sbjct: 54  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI 98


>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
 pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
          Length = 281

 Score = 29.6 bits (65), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 45  EEYGLF---VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
           +E+ L+   VW  +  LA+ +  Q    +G  V ELGAG  L  +VA   G++  +  D 
Sbjct: 51  QEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDY 110

Query: 102 NRIELL 107
              E+L
Sbjct: 111 PDPEIL 116


>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
 pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
          Structure Of Arabidopsis Thaliana Protein Arginine
          Methyltransferase 10
          Length = 376

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS 93
          V+Q ++ F G  V+++G G+ +  + +A+ G+
Sbjct: 55 VFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA 86


>pdb|3O13|A Chain A, Crystal Structure Of A Superantigen-Like Protein (Sav0433)
           From Staphylococcus Aureus Mu50 At 2.05 A Resolution
          Length = 198

 Score = 25.8 bits (55), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 78  GAGTSLPGLVAAKVGSNVTLTDDSNRIELLMT 109
           G G  L  +   K G+ VT  D+S +I++ +T
Sbjct: 20  GRGFELTNVTGYKYGNKVTFIDNSQQIDVTLT 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,888,309
Number of Sequences: 62578
Number of extensions: 142498
Number of successful extensions: 378
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)