Query 032395
Match_columns 141
No_of_seqs 134 out of 1392
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.8 1.4E-21 3E-26 146.6 1.8 98 35-137 4-109 (173)
2 COG3897 Predicted methyltransf 99.4 4E-14 8.7E-19 108.2 1.8 104 10-118 17-126 (218)
3 KOG1499 Protein arginine N-met 99.3 7.2E-13 1.6E-17 108.5 0.6 112 18-140 18-142 (346)
4 PF06325 PrmA: Ribosomal prote 99.3 9E-13 2E-17 106.7 1.1 80 33-118 128-208 (295)
5 KOG2793 Putative N2,N2-dimethy 99.2 9.9E-12 2.1E-16 98.3 3.8 100 36-138 41-153 (248)
6 COG2264 PrmA Ribosomal protein 99.2 1E-11 2.2E-16 100.6 3.1 78 34-117 130-208 (300)
7 KOG2920 Predicted methyltransf 98.9 1.4E-09 3.1E-14 87.2 5.6 72 46-117 89-167 (282)
8 COG2263 Predicted RNA methylas 98.8 1.8E-09 4E-14 82.3 2.1 71 44-116 16-90 (198)
9 KOG3201 Uncharacterized conser 98.7 2.4E-09 5.2E-14 80.2 -1.3 70 46-117 4-77 (201)
10 PF05175 MTS: Methyltransferas 98.6 8.3E-09 1.8E-13 76.8 1.4 59 53-117 18-78 (170)
11 PRK00517 prmA ribosomal protei 98.6 1.3E-08 2.8E-13 80.2 0.9 79 33-117 86-165 (250)
12 TIGR00406 prmA ribosomal prote 98.6 1.6E-08 3.5E-13 81.3 1.4 79 33-117 126-205 (288)
13 KOG3420 Predicted RNA methylas 98.5 5E-08 1.1E-12 72.1 1.0 69 45-115 19-92 (185)
14 PF12847 Methyltransf_18: Meth 98.4 5.3E-08 1.1E-12 66.5 -0.2 43 70-114 1-45 (112)
15 KOG1500 Protein arginine N-met 98.3 1.8E-07 3.9E-12 77.4 1.4 74 64-138 171-256 (517)
16 TIGR00095 RNA methyltransferas 98.3 3.6E-07 7.8E-12 69.5 2.0 50 66-117 45-95 (189)
17 PRK04148 hypothetical protein; 98.3 3.9E-07 8.5E-12 66.1 1.7 47 57-103 3-50 (134)
18 COG2890 HemK Methylase of poly 98.2 8.6E-07 1.9E-11 71.4 2.2 44 73-118 113-158 (280)
19 TIGR00537 hemK_rel_arch HemK-r 98.2 6.3E-07 1.4E-11 66.8 1.0 46 68-115 17-62 (179)
20 TIGR00478 tly hemolysin TlyA f 98.1 2.2E-06 4.8E-11 67.3 3.6 54 50-103 55-109 (228)
21 COG4123 Predicted O-methyltran 98.1 7.8E-07 1.7E-11 70.6 0.8 65 47-117 25-91 (248)
22 COG2227 UbiG 2-polyprenyl-3-me 98.1 9.9E-07 2.1E-11 69.6 1.3 35 69-103 58-92 (243)
23 PRK15001 SAM-dependent 23S rib 98.1 9.1E-07 2E-11 74.1 1.0 45 71-117 229-275 (378)
24 TIGR00477 tehB tellurite resis 98.1 1.2E-06 2.6E-11 66.6 1.5 36 68-103 28-63 (195)
25 KOG1270 Methyltransferases [Co 98.1 2E-06 4.4E-11 68.7 2.4 35 69-103 88-122 (282)
26 PRK11207 tellurite resistance 98.0 1.4E-06 3E-11 66.3 0.9 36 68-103 28-63 (197)
27 COG2813 RsmC 16S RNA G1207 met 98.0 2E-06 4.3E-11 69.9 1.7 57 59-117 147-205 (300)
28 PRK14968 putative methyltransf 98.0 2.1E-06 4.6E-11 63.5 1.2 55 53-113 10-64 (188)
29 PF05185 PRMT5: PRMT5 arginine 98.0 2.3E-06 5E-11 73.1 1.4 70 70-139 186-272 (448)
30 TIGR00138 gidB 16S rRNA methyl 98.0 2.3E-06 4.9E-11 64.6 1.0 36 68-103 40-77 (181)
31 PRK14967 putative methyltransf 97.9 2.7E-06 5.9E-11 65.7 0.9 59 54-115 21-80 (223)
32 TIGR00080 pimt protein-L-isoas 97.9 2.5E-06 5.4E-11 65.6 0.6 59 54-114 61-122 (215)
33 PRK08287 cobalt-precorrin-6Y C 97.9 4.2E-06 9.1E-11 62.8 1.8 45 69-115 30-76 (187)
34 PRK12335 tellurite resistance 97.9 3.7E-06 8E-11 67.4 1.5 42 69-112 119-160 (287)
35 PRK13168 rumA 23S rRNA m(5)U19 97.9 5.5E-06 1.2E-10 70.3 1.9 60 56-117 283-342 (443)
36 PRK03522 rumB 23S rRNA methylu 97.9 5.7E-06 1.2E-10 67.3 1.9 46 69-116 172-217 (315)
37 smart00650 rADc Ribosomal RNA 97.9 4.3E-06 9.4E-11 61.9 1.1 42 62-103 5-46 (169)
38 PRK00274 ksgA 16S ribosomal RN 97.9 6.1E-06 1.3E-10 65.9 1.9 53 58-112 30-82 (272)
39 TIGR02469 CbiT precorrin-6Y C5 97.9 7.3E-06 1.6E-10 56.3 2.0 43 69-113 18-62 (124)
40 PRK00107 gidB 16S rRNA methylt 97.9 6.4E-06 1.4E-10 62.7 1.8 34 70-103 45-80 (187)
41 PRK10909 rsmD 16S rRNA m(2)G96 97.8 6.5E-06 1.4E-10 63.3 1.5 47 69-117 52-99 (199)
42 PF13489 Methyltransf_23: Meth 97.8 2E-05 4.3E-10 56.4 3.8 36 68-103 20-55 (161)
43 PLN02585 magnesium protoporphy 97.8 1.2E-05 2.5E-10 65.9 2.2 35 69-103 143-177 (315)
44 PLN02396 hexaprenyldihydroxybe 97.8 5.5E-06 1.2E-10 68.0 0.3 35 69-103 130-164 (322)
45 PF03848 TehB: Tellurite resis 97.8 1.1E-05 2.3E-10 61.9 1.6 37 67-103 27-63 (192)
46 TIGR02085 meth_trns_rumB 23S r 97.8 1.1E-05 2.3E-10 67.3 1.7 47 69-117 232-278 (374)
47 COG2230 Cfa Cyclopropane fatty 97.8 1.8E-05 3.9E-10 64.0 2.9 37 67-103 69-106 (283)
48 TIGR02021 BchM-ChlM magnesium 97.8 1.2E-05 2.6E-10 61.6 1.8 36 68-103 53-88 (219)
49 PF13847 Methyltransf_31: Meth 97.8 5.4E-06 1.2E-10 60.1 -0.3 34 70-103 3-39 (152)
50 PRK11727 23S rRNA mA1618 methy 97.8 8.8E-06 1.9E-10 66.8 1.0 45 71-117 115-161 (321)
51 PF13659 Methyltransf_26: Meth 97.8 5E-06 1.1E-10 57.1 -0.4 43 71-115 1-44 (117)
52 PRK10258 biotin biosynthesis p 97.7 1.5E-05 3.4E-10 62.1 2.2 34 70-103 42-75 (251)
53 PRK14896 ksgA 16S ribosomal RN 97.7 1.3E-05 2.7E-10 63.5 1.5 47 57-103 16-62 (258)
54 PRK05134 bifunctional 3-demeth 97.7 1.5E-05 3.3E-10 61.4 1.9 47 57-103 35-81 (233)
55 PRK07402 precorrin-6B methylas 97.7 1.7E-05 3.7E-10 59.9 1.8 44 69-114 39-84 (196)
56 PRK13944 protein-L-isoaspartat 97.7 1.7E-05 3.7E-10 60.6 1.7 49 55-103 57-108 (205)
57 PRK11783 rlmL 23S rRNA m(2)G24 97.7 9.6E-06 2.1E-10 72.6 0.3 47 69-117 537-584 (702)
58 PRK00312 pcm protein-L-isoaspa 97.7 1.7E-05 3.8E-10 60.5 1.6 50 54-103 62-111 (212)
59 PLN02672 methionine S-methyltr 97.7 1.3E-05 2.7E-10 74.7 0.7 63 53-117 100-165 (1082)
60 PRK01683 trans-aconitate 2-met 97.7 2.9E-05 6.2E-10 60.8 2.5 34 70-103 31-66 (258)
61 PRK11036 putative S-adenosyl-L 97.7 1.1E-05 2.4E-10 63.4 0.2 34 70-103 44-77 (255)
62 PRK09489 rsmC 16S ribosomal RN 97.7 1.6E-05 3.6E-10 65.6 1.2 45 71-117 197-243 (342)
63 PRK15068 tRNA mo(5)U34 methylt 97.6 4.1E-05 8.9E-10 62.7 3.3 52 51-103 104-156 (322)
64 TIGR03587 Pse_Me-ase pseudamin 97.6 2.9E-05 6.4E-10 59.6 2.3 34 70-103 43-78 (204)
65 TIGR03704 PrmC_rel_meth putati 97.6 2E-05 4.3E-10 62.4 1.3 45 71-117 87-133 (251)
66 PRK00377 cbiT cobalt-precorrin 97.6 2.6E-05 5.7E-10 59.1 1.8 46 67-114 37-85 (198)
67 PRK15128 23S rRNA m(5)C1962 me 97.6 1.4E-05 3E-10 67.3 0.2 47 69-117 219-266 (396)
68 TIGR00452 methyltransferase, p 97.6 6.5E-05 1.4E-09 61.5 4.1 37 67-103 118-155 (314)
69 PRK14966 unknown domain/N5-glu 97.6 2.6E-05 5.6E-10 66.2 1.8 57 56-116 239-297 (423)
70 TIGR03533 L3_gln_methyl protei 97.6 2.6E-05 5.5E-10 62.8 1.5 44 71-116 122-167 (284)
71 PRK13942 protein-L-isoaspartat 97.6 2.6E-05 5.6E-10 60.0 1.4 51 53-103 59-112 (212)
72 PRK09328 N5-glutamine S-adenos 97.6 3.6E-05 7.9E-10 60.5 2.0 58 56-115 94-153 (275)
73 TIGR00479 rumA 23S rRNA (uraci 97.6 3.1E-05 6.8E-10 65.3 1.7 46 70-117 292-337 (431)
74 PLN02244 tocopherol O-methyltr 97.6 3.4E-05 7.4E-10 63.4 1.8 34 70-103 118-152 (340)
75 TIGR00536 hemK_fam HemK family 97.5 3.3E-05 7.2E-10 61.9 1.1 43 72-116 116-160 (284)
76 PRK07580 Mg-protoporphyrin IX 97.5 2.4E-05 5.1E-10 59.9 0.2 35 69-103 62-96 (230)
77 TIGR00755 ksgA dimethyladenosi 97.5 4.5E-05 9.7E-10 60.1 1.7 45 59-103 18-62 (253)
78 PRK00121 trmB tRNA (guanine-N( 97.5 2.5E-05 5.4E-10 59.6 0.2 34 70-103 40-75 (202)
79 PRK14103 trans-aconitate 2-met 97.5 6E-05 1.3E-09 59.1 2.4 34 70-103 29-64 (255)
80 PF08242 Methyltransf_12: Meth 97.5 6.6E-05 1.4E-09 50.3 2.1 38 75-114 1-40 (99)
81 TIGR02143 trmA_only tRNA (urac 97.5 4.8E-05 1E-09 63.0 1.7 45 71-117 198-242 (353)
82 PF02353 CMAS: Mycolic acid cy 97.5 9.3E-05 2E-09 59.4 3.1 45 59-103 51-96 (273)
83 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.0001 2.2E-09 57.1 3.2 49 54-103 19-67 (213)
84 PRK11705 cyclopropane fatty ac 97.5 5.7E-05 1.2E-09 63.3 1.8 36 68-103 165-201 (383)
85 TIGR01177 conserved hypothetic 97.5 5.6E-05 1.2E-09 61.8 1.7 55 57-113 169-223 (329)
86 TIGR00438 rrmJ cell division p 97.4 0.00017 3.7E-09 54.1 4.1 47 57-103 19-68 (188)
87 COG2242 CobL Precorrin-6B meth 97.4 4E-05 8.6E-10 58.5 0.4 46 70-117 34-81 (187)
88 PRK05785 hypothetical protein; 97.4 9E-05 2E-09 57.7 2.4 34 70-103 51-85 (226)
89 PRK04266 fibrillarin; Provisio 97.4 6.8E-05 1.5E-09 58.6 1.7 36 68-103 70-107 (226)
90 PRK11805 N5-glutamine S-adenos 97.4 6.3E-05 1.4E-09 61.3 1.4 43 72-116 135-179 (307)
91 PTZ00338 dimethyladenosine tra 97.4 5.9E-05 1.3E-09 61.2 1.2 46 58-103 24-69 (294)
92 TIGR01983 UbiG ubiquinone bios 97.4 7.2E-05 1.6E-09 57.0 1.5 35 69-103 44-78 (224)
93 PF08241 Methyltransf_11: Meth 97.4 3E-05 6.6E-10 50.4 -0.8 29 75-103 1-30 (95)
94 PRK15451 tRNA cmo(5)U34 methyl 97.4 5.1E-05 1.1E-09 59.6 0.3 42 70-113 56-101 (247)
95 PRK01544 bifunctional N5-gluta 97.3 7.5E-05 1.6E-09 64.7 1.3 44 71-116 139-184 (506)
96 PLN02781 Probable caffeoyl-CoA 97.3 6.6E-05 1.4E-09 58.8 0.9 59 57-117 55-116 (234)
97 PF08003 Methyltransf_9: Prote 97.3 0.00017 3.8E-09 58.9 3.2 52 51-103 97-149 (315)
98 PRK13255 thiopurine S-methyltr 97.3 0.00015 3.2E-09 56.4 2.6 47 56-103 24-70 (218)
99 TIGR03534 RF_mod_PrmC protein- 97.3 7.9E-05 1.7E-09 57.6 1.0 59 52-113 70-130 (251)
100 PRK11188 rrmJ 23S rRNA methylt 97.3 0.00028 6E-09 54.3 4.0 34 69-102 50-86 (209)
101 PTZ00098 phosphoethanolamine N 97.3 0.00013 2.8E-09 58.0 2.1 51 53-103 35-86 (263)
102 COG2518 Pcm Protein-L-isoaspar 97.3 4.6E-05 1E-09 59.1 -0.5 65 47-113 49-113 (209)
103 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00011 2.5E-09 61.0 1.7 45 71-117 207-251 (362)
104 TIGR00740 methyltransferase, p 97.3 6.8E-05 1.5E-09 58.2 0.3 41 70-112 53-97 (239)
105 KOG2187 tRNA uracil-5-methyltr 97.3 0.00043 9.2E-09 59.9 4.9 78 35-117 351-428 (534)
106 COG4976 Predicted methyltransf 97.3 8.6E-05 1.9E-09 58.8 0.6 33 72-104 127-159 (287)
107 PF03602 Cons_hypoth95: Conser 97.2 4.4E-05 9.5E-10 57.9 -1.1 46 69-116 41-87 (183)
108 PRK00216 ubiE ubiquinone/menaq 97.2 0.00019 4.1E-09 54.7 2.3 34 70-103 51-87 (239)
109 PRK06202 hypothetical protein; 97.2 0.00013 2.8E-09 56.4 1.1 34 70-103 60-99 (232)
110 TIGR02072 BioC biotin biosynth 97.2 0.00041 8.9E-09 52.7 3.7 35 69-103 33-69 (240)
111 PRK13943 protein-L-isoaspartat 97.2 0.00016 3.4E-09 59.4 1.5 48 56-103 66-116 (322)
112 PLN02336 phosphoethanolamine N 97.2 0.00019 4.2E-09 61.0 2.0 34 70-103 266-300 (475)
113 TIGR02752 MenG_heptapren 2-hep 97.2 0.00013 2.9E-09 56.0 0.7 34 70-103 45-81 (231)
114 PRK08317 hypothetical protein; 97.1 0.0006 1.3E-08 51.6 4.1 37 67-103 16-55 (241)
115 PHA03412 putative methyltransf 97.1 0.00016 3.4E-09 57.3 0.9 54 57-114 38-96 (241)
116 PF13649 Methyltransf_25: Meth 97.1 7.2E-05 1.6E-09 50.5 -1.0 37 74-112 1-42 (101)
117 TIGR00091 tRNA (guanine-N(7)-) 97.1 0.00012 2.5E-09 55.5 -0.0 34 70-103 16-51 (194)
118 PRK11873 arsM arsenite S-adeno 97.1 0.00015 3.2E-09 57.4 0.4 34 70-103 77-113 (272)
119 TIGR03438 probable methyltrans 97.0 0.00018 3.9E-09 58.2 0.5 34 70-103 63-99 (301)
120 PHA03411 putative methyltransf 97.0 0.0002 4.4E-09 57.8 0.6 41 70-112 64-106 (279)
121 COG2226 UbiE Methylase involve 97.0 0.00037 7.9E-09 55.1 2.0 50 49-104 36-87 (238)
122 KOG2904 Predicted methyltransf 97.0 0.0004 8.6E-09 56.3 2.1 50 66-117 144-195 (328)
123 PLN02233 ubiquinone biosynthes 96.9 0.00071 1.5E-08 53.7 3.1 34 70-103 73-109 (261)
124 PF05958 tRNA_U5-meth_tr: tRNA 96.9 0.00037 8E-09 57.8 1.4 43 73-117 199-241 (352)
125 PLN02336 phosphoethanolamine N 96.9 0.00076 1.7E-08 57.4 3.3 35 69-103 36-70 (475)
126 KOG3191 Predicted N6-DNA-methy 96.9 0.00044 9.4E-09 53.0 1.6 50 54-103 24-79 (209)
127 PRK04338 N(2),N(2)-dimethylgua 96.9 0.00021 4.6E-09 59.9 -0.1 45 71-117 58-104 (382)
128 PF01596 Methyltransf_3: O-met 96.9 0.0004 8.6E-09 53.6 1.1 60 54-115 29-91 (205)
129 PRK06922 hypothetical protein; 96.8 0.00048 1E-08 61.5 1.5 36 68-103 416-453 (677)
130 PF01209 Ubie_methyltran: ubiE 96.8 0.00089 1.9E-08 52.5 2.9 50 49-104 32-84 (233)
131 PF02475 Met_10: Met-10+ like- 96.8 0.00027 5.8E-09 54.5 -0.1 46 70-117 101-148 (200)
132 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.00051 1.1E-08 57.6 1.5 44 72-117 46-92 (374)
133 PF01135 PCMT: Protein-L-isoas 96.8 0.00028 6E-09 54.7 -0.1 58 54-113 56-116 (209)
134 PRK10901 16S rRNA methyltransf 96.8 0.00061 1.3E-08 57.7 1.5 45 69-115 243-289 (427)
135 TIGR01934 MenG_MenH_UbiE ubiqu 96.7 0.0011 2.4E-08 50.0 2.4 34 70-103 39-75 (223)
136 COG2265 TrmA SAM-dependent met 96.7 0.00091 2E-08 57.1 2.0 59 58-118 281-339 (432)
137 KOG1271 Methyltransferases [Ge 96.7 0.0016 3.5E-08 50.1 3.0 74 37-110 27-110 (227)
138 smart00828 PKS_MT Methyltransf 96.6 0.00057 1.2E-08 52.2 0.2 32 72-103 1-34 (224)
139 PLN02476 O-methyltransferase 96.6 0.00087 1.9E-08 54.1 1.2 56 59-116 107-165 (278)
140 TIGR02081 metW methionine bios 96.6 0.0017 3.6E-08 48.9 2.5 34 70-103 13-47 (194)
141 KOG1541 Predicted protein carb 96.5 0.002 4.3E-08 50.9 2.9 34 70-103 50-83 (270)
142 COG1189 Predicted rRNA methyla 96.5 0.0036 7.8E-08 49.6 4.2 53 51-103 60-113 (245)
143 PF13679 Methyltransf_32: Meth 96.5 0.0031 6.7E-08 45.4 3.6 34 70-103 25-64 (141)
144 COG4076 Predicted RNA methylas 96.5 0.0018 3.9E-08 50.1 2.4 45 71-117 33-77 (252)
145 KOG3010 Methyltransferase [Gen 96.5 0.0018 3.9E-08 51.5 2.3 32 72-103 35-66 (261)
146 TIGR02716 C20_methyl_CrtF C-20 96.5 0.0012 2.6E-08 53.2 1.4 34 70-103 149-184 (306)
147 PRK14904 16S rRNA methyltransf 96.5 0.0016 3.4E-08 55.5 2.1 61 49-114 232-295 (445)
148 PRK14121 tRNA (guanine-N(7)-)- 96.5 0.0011 2.4E-08 55.9 1.1 34 70-103 122-157 (390)
149 PLN02490 MPBQ/MSBQ methyltrans 96.4 0.001 2.2E-08 55.2 0.7 34 70-103 113-148 (340)
150 TIGR01444 fkbM_fam methyltrans 96.4 0.00077 1.7E-08 47.8 -0.1 43 73-117 1-45 (143)
151 COG0030 KsgA Dimethyladenosine 96.4 0.0035 7.6E-08 50.2 3.6 50 59-108 19-69 (259)
152 PRK14902 16S rRNA methyltransf 96.4 0.0014 3.1E-08 55.7 1.4 43 70-114 250-295 (444)
153 PRK11088 rrmA 23S rRNA methylt 96.4 0.0012 2.5E-08 52.5 0.8 34 70-103 85-123 (272)
154 PF00398 RrnaAD: Ribosomal RNA 96.4 0.0063 1.4E-07 48.2 4.9 54 55-108 15-69 (262)
155 KOG2899 Predicted methyltransf 96.4 0.0012 2.6E-08 52.7 0.7 48 67-116 55-104 (288)
156 PHA01634 hypothetical protein 96.3 0.0017 3.6E-08 47.3 1.2 36 68-103 26-62 (156)
157 PRK13256 thiopurine S-methyltr 96.3 0.0039 8.6E-08 48.9 3.3 56 47-103 21-76 (226)
158 smart00138 MeTrc Methyltransfe 96.3 0.0016 3.4E-08 51.9 1.0 41 71-113 100-151 (264)
159 COG0742 N6-adenine-specific me 96.3 0.0013 2.9E-08 50.2 0.5 46 68-115 41-87 (187)
160 cd02440 AdoMet_MTases S-adenos 96.2 0.0037 7.9E-08 39.9 2.2 31 73-103 1-32 (107)
161 PRK00811 spermidine synthase; 96.2 0.0024 5.2E-08 51.3 1.5 41 70-112 76-118 (283)
162 TIGR00446 nop2p NOL1/NOP2/sun 96.1 0.0015 3.2E-08 51.9 0.0 44 70-115 71-117 (264)
163 TIGR00563 rsmB ribosomal RNA s 96.1 0.0027 5.9E-08 53.7 1.5 44 70-115 238-283 (426)
164 PRK14901 16S rRNA methyltransf 96.0 0.0035 7.5E-08 53.2 1.7 45 69-115 251-298 (434)
165 PF05971 Methyltransf_10: Prot 95.9 0.0026 5.7E-08 51.9 0.7 47 72-120 104-152 (299)
166 PRK04457 spermidine synthase; 95.9 0.0021 4.6E-08 51.1 0.1 34 70-103 66-101 (262)
167 KOG2497 Predicted methyltransf 95.8 0.0012 2.6E-08 52.9 -1.6 56 45-100 65-120 (262)
168 COG2519 GCD14 tRNA(1-methylade 95.8 0.0032 7E-08 50.2 0.7 51 64-116 88-141 (256)
169 PRK14903 16S rRNA methyltransf 95.8 0.0041 9E-08 52.9 1.4 45 69-115 236-283 (431)
170 PF05724 TPMT: Thiopurine S-me 95.7 0.011 2.4E-07 46.0 3.4 49 54-103 22-70 (218)
171 PRK11760 putative 23S rRNA C24 95.7 0.013 2.8E-07 48.9 3.8 35 69-103 210-244 (357)
172 COG2520 Predicted methyltransf 95.7 0.0038 8.2E-08 51.8 0.6 47 69-117 187-234 (341)
173 PTZ00146 fibrillarin; Provisio 95.6 0.013 2.8E-07 47.7 3.4 58 46-103 104-168 (293)
174 KOG1501 Arginine N-methyltrans 95.5 0.0047 1E-07 53.2 0.8 30 73-102 69-99 (636)
175 COG3963 Phospholipid N-methylt 95.5 0.017 3.6E-07 43.9 3.6 54 50-103 28-84 (194)
176 COG0357 GidB Predicted S-adeno 95.5 0.012 2.6E-07 46.0 2.8 32 71-102 68-101 (215)
177 COG1092 Predicted SAM-dependen 95.3 0.0049 1.1E-07 52.1 0.2 49 68-118 215-264 (393)
178 PF02527 GidB: rRNA small subu 95.2 0.034 7.3E-07 42.3 4.4 30 73-102 51-82 (184)
179 PF08704 GCD14: tRNA methyltra 95.1 0.006 1.3E-07 48.5 0.2 53 62-116 32-87 (247)
180 COG4122 Predicted O-methyltran 95.1 0.009 1.9E-07 46.7 1.1 47 68-116 57-106 (219)
181 KOG0820 Ribosomal RNA adenine 95.0 0.03 6.4E-07 45.5 3.8 37 67-103 55-91 (315)
182 PF05401 NodS: Nodulation prot 95.0 0.011 2.4E-07 45.6 1.3 32 72-103 45-76 (201)
183 PF07021 MetW: Methionine bios 95.0 0.015 3.4E-07 44.6 2.1 34 70-103 13-47 (193)
184 COG4106 Tam Trans-aconitate me 94.9 0.015 3.3E-07 45.9 1.8 34 71-104 31-66 (257)
185 PF01728 FtsJ: FtsJ-like methy 94.8 0.031 6.8E-07 41.4 3.3 50 54-103 5-59 (181)
186 PF10672 Methyltrans_SAM: S-ad 94.8 0.0058 1.3E-07 49.6 -0.8 48 69-118 122-170 (286)
187 PLN02589 caffeoyl-CoA O-methyl 94.7 0.011 2.4E-07 46.9 0.6 54 59-114 68-124 (247)
188 PRK03612 spermidine synthase; 94.7 0.015 3.2E-07 50.7 1.3 42 70-113 297-340 (521)
189 KOG0024 Sorbitol dehydrogenase 94.5 0.016 3.4E-07 48.0 1.1 79 19-103 124-205 (354)
190 TIGR00417 speE spermidine synt 94.2 0.014 3E-07 46.5 0.1 34 70-103 72-107 (270)
191 PF03291 Pox_MCEL: mRNA cappin 94.2 0.027 5.8E-07 46.5 1.8 53 51-103 43-96 (331)
192 PF09445 Methyltransf_15: RNA 94.1 0.0089 1.9E-07 44.7 -1.0 42 72-115 1-42 (163)
193 KOG1540 Ubiquinone biosynthesi 94.1 0.033 7.3E-07 44.9 2.1 53 45-103 81-141 (296)
194 PLN03075 nicotianamine synthas 93.9 0.027 5.9E-07 45.9 1.3 42 70-113 123-168 (296)
195 PF05219 DREV: DREV methyltran 93.6 0.048 1E-06 43.8 2.2 35 70-104 94-128 (265)
196 COG0293 FtsJ 23S rRNA methylas 93.3 0.14 3E-06 39.8 4.3 50 53-103 28-81 (205)
197 PLN02366 spermidine synthase 93.2 0.052 1.1E-06 44.4 1.9 34 70-103 91-126 (308)
198 PRK01581 speE spermidine synth 92.9 0.036 7.7E-07 46.6 0.5 34 70-103 150-185 (374)
199 PF00891 Methyltransf_2: O-met 92.6 0.12 2.6E-06 40.0 3.0 38 71-108 101-140 (241)
200 KOG1661 Protein-L-isoaspartate 92.3 0.059 1.3E-06 42.3 0.9 69 46-116 56-130 (237)
201 PRK00050 16S rRNA m(4)C1402 me 92.3 0.075 1.6E-06 43.3 1.6 34 70-103 19-55 (296)
202 PF02390 Methyltransf_4: Putat 92.0 0.11 2.3E-06 39.7 2.0 32 72-103 19-52 (195)
203 KOG2361 Predicted methyltransf 91.9 0.073 1.6E-06 42.5 1.0 43 73-117 74-120 (264)
204 PF07757 AdoMet_MTase: Predict 91.8 0.19 4.1E-06 35.4 2.9 31 72-102 60-90 (112)
205 KOG4300 Predicted methyltransf 91.8 0.077 1.7E-06 41.7 1.1 45 73-117 79-126 (252)
206 COG1041 Predicted DNA modifica 91.7 0.11 2.4E-06 43.3 2.0 59 55-115 182-240 (347)
207 TIGR02987 met_A_Alw26 type II 90.9 0.086 1.9E-06 45.7 0.6 34 70-103 31-74 (524)
208 PLN02823 spermine synthase 90.7 0.14 2.9E-06 42.5 1.6 42 70-113 103-146 (336)
209 PF06080 DUF938: Protein of un 90.3 0.25 5.4E-06 38.3 2.6 31 73-103 28-60 (204)
210 PF02384 N6_Mtase: N-6 DNA Met 90.1 0.1 2.2E-06 41.9 0.3 50 54-103 30-88 (311)
211 PRK10742 putative methyltransf 89.5 0.27 5.8E-06 39.3 2.3 31 73-103 91-121 (250)
212 PF04816 DUF633: Family of unk 89.5 0.088 1.9E-06 40.7 -0.5 41 74-116 1-43 (205)
213 PF03686 UPF0146: Uncharacteri 88.9 0.58 1.3E-05 33.7 3.5 44 57-103 3-47 (127)
214 COG2521 Predicted archaeal met 87.7 0.48 1E-05 38.0 2.6 42 70-113 134-176 (287)
215 KOG1227 Putative methyltransfe 87.6 0.2 4.3E-06 41.3 0.5 67 49-117 167-241 (351)
216 COG0220 Predicted S-adenosylme 87.5 0.42 9.1E-06 37.5 2.2 32 72-103 50-83 (227)
217 KOG1975 mRNA cap methyltransfe 87.2 0.52 1.1E-05 39.4 2.6 34 70-103 117-151 (389)
218 PF08123 DOT1: Histone methyla 86.6 0.69 1.5E-05 35.7 2.9 34 70-103 42-77 (205)
219 PF01170 UPF0020: Putative RNA 86.1 0.18 4E-06 37.8 -0.5 56 58-115 16-82 (179)
220 PF01234 NNMT_PNMT_TEMT: NNMT/ 85.9 0.6 1.3E-05 37.4 2.3 36 68-103 54-90 (256)
221 PF09243 Rsm22: Mitochondrial 85.1 0.9 1.9E-05 36.4 3.0 38 67-104 30-70 (274)
222 KOG3987 Uncharacterized conser 84.0 0.25 5.5E-06 39.0 -0.6 32 72-103 114-145 (288)
223 PF02005 TRM: N2,N2-dimethylgu 83.5 0.28 6.1E-06 41.2 -0.5 46 71-118 50-98 (377)
224 cd00401 AdoHcyase S-adenosyl-L 83.4 0.63 1.4E-05 39.7 1.5 51 46-103 183-236 (413)
225 PRK11783 rlmL 23S rRNA m(2)G24 82.9 0.55 1.2E-05 42.5 1.0 34 57-90 176-210 (702)
226 COG3129 Predicted SAM-dependen 82.8 0.56 1.2E-05 37.6 0.9 47 71-119 79-127 (292)
227 PF05206 TRM13: Methyltransfer 82.0 1.5 3.2E-05 35.1 3.1 34 70-103 18-58 (259)
228 KOG2078 tRNA modification enzy 81.4 0.7 1.5E-05 39.8 1.0 68 46-117 226-294 (495)
229 COG0500 SmtA SAM-dependent met 81.0 1.2 2.7E-05 28.8 2.0 29 74-103 52-83 (257)
230 PRK01544 bifunctional N5-gluta 80.0 1.2 2.6E-05 38.7 2.1 34 70-103 347-382 (506)
231 cd00315 Cyt_C5_DNA_methylase C 80.0 0.7 1.5E-05 36.9 0.6 40 73-114 2-42 (275)
232 KOG4058 Uncharacterized conser 79.9 2.2 4.8E-05 32.1 3.1 33 72-104 74-107 (199)
233 KOG1663 O-methyltransferase [S 79.2 2.4 5.2E-05 33.6 3.3 50 54-103 57-109 (237)
234 TIGR03439 methyl_EasF probable 78.2 0.84 1.8E-05 37.6 0.5 33 70-102 76-114 (319)
235 PF01555 N6_N4_Mtase: DNA meth 77.8 3 6.4E-05 31.0 3.4 50 53-103 175-224 (231)
236 PRK09424 pntA NAD(P) transhydr 75.2 1.6 3.4E-05 38.3 1.4 35 69-103 163-199 (509)
237 COG1255 Uncharacterized protei 74.0 3.5 7.6E-05 29.5 2.7 32 72-103 15-47 (129)
238 PRK11933 yebU rRNA (cytosine-C 73.8 1.5 3.2E-05 38.1 0.9 43 70-114 113-158 (470)
239 COG1063 Tdh Threonine dehydrog 72.4 3 6.5E-05 34.3 2.4 35 69-103 167-204 (350)
240 PLN02668 indole-3-acetate carb 72.2 2.3 5E-05 36.0 1.7 33 71-103 64-113 (386)
241 PF05148 Methyltransf_8: Hypot 71.3 3.5 7.7E-05 32.3 2.4 34 50-86 53-88 (219)
242 COG0499 SAM1 S-adenosylhomocys 71.0 3.4 7.4E-05 35.1 2.4 51 46-103 190-243 (420)
243 PF03141 Methyltransf_29: Puta 70.9 5.4 0.00012 35.0 3.6 51 45-95 88-142 (506)
244 KOG2915 tRNA(1-methyladenosine 69.6 5.7 0.00012 32.6 3.3 35 68-102 103-140 (314)
245 COG1064 AdhP Zn-dependent alco 69.4 3.9 8.5E-05 34.1 2.4 36 68-103 164-201 (339)
246 KOG4589 Cell division protein 68.7 3.7 8E-05 32.0 2.0 34 70-103 69-105 (232)
247 COG1352 CheR Methylase of chem 68.3 2.2 4.9E-05 34.3 0.8 39 72-112 98-147 (268)
248 COG1867 TRM1 N2,N2-dimethylgua 67.7 1.7 3.7E-05 36.7 -0.0 45 71-117 53-99 (380)
249 cd01080 NAD_bind_m-THF_DH_Cycl 66.8 6.8 0.00015 29.2 3.1 37 66-102 39-78 (168)
250 PF07942 N2227: N2227-like pro 66.3 6.1 0.00013 31.9 2.9 34 71-104 57-90 (270)
251 TIGR00936 ahcY adenosylhomocys 65.9 3.2 7E-05 35.4 1.3 36 68-103 192-229 (406)
252 PRK13699 putative methylase; P 65.6 10 0.00022 29.5 3.9 34 70-103 163-196 (227)
253 KOG2730 Methylase [General fun 65.0 4.8 0.0001 32.1 2.0 63 52-116 75-138 (263)
254 PLN02494 adenosylhomocysteinas 63.8 4.4 9.6E-05 35.3 1.7 52 46-103 235-288 (477)
255 KOG2671 Putative RNA methylase 63.8 8.6 0.00019 32.6 3.3 51 68-118 206-257 (421)
256 PRK11524 putative methyltransf 62.4 12 0.00026 29.8 3.9 34 70-103 208-241 (284)
257 PRK05476 S-adenosyl-L-homocyst 61.2 4.3 9.3E-05 34.8 1.2 36 68-103 209-246 (425)
258 KOG2940 Predicted methyltransf 61.2 9.7 0.00021 30.7 3.1 33 71-103 73-106 (325)
259 PF01564 Spermine_synth: Sperm 60.1 4.3 9.4E-05 31.9 1.0 34 70-103 76-111 (246)
260 COG3392 Adenine-specific DNA m 60.1 8 0.00017 31.6 2.5 47 56-102 8-59 (330)
261 PF11968 DUF3321: Putative met 59.0 17 0.00036 28.6 4.0 50 53-104 30-84 (219)
262 PF00670 AdoHcyase_NAD: S-aden 58.8 8.3 0.00018 28.8 2.3 39 65-103 17-57 (162)
263 KOG1709 Guanidinoacetate methy 58.6 9.4 0.0002 30.4 2.6 44 69-114 100-144 (271)
264 PRK00421 murC UDP-N-acetylmura 58.2 7.4 0.00016 33.1 2.1 36 68-103 4-42 (461)
265 TIGR03366 HpnZ_proposed putati 56.2 13 0.00029 29.0 3.2 34 69-102 119-155 (280)
266 PRK09880 L-idonate 5-dehydroge 55.9 13 0.00028 29.9 3.1 35 68-102 167-204 (343)
267 COG0421 SpeE Spermidine syntha 55.8 6.7 0.00015 31.8 1.4 32 72-103 78-111 (282)
268 PF02086 MethyltransfD12: D12 55.6 10 0.00022 29.1 2.4 47 57-103 7-53 (260)
269 COG5459 Predicted rRNA methyla 54.7 3.4 7.3E-05 35.2 -0.5 48 67-114 110-161 (484)
270 PF03721 UDPG_MGDP_dh_N: UDP-g 54.6 7.5 0.00016 29.2 1.4 24 80-103 7-34 (185)
271 KOG1201 Hydroxysteroid 17-beta 54.4 11 0.00024 31.0 2.4 46 67-112 34-84 (300)
272 KOG2651 rRNA adenine N-6-methy 54.3 17 0.00037 31.3 3.6 35 69-103 151-187 (476)
273 PRK03369 murD UDP-N-acetylmura 53.5 8.1 0.00018 33.3 1.6 35 68-102 9-45 (488)
274 COG1565 Uncharacterized conser 53.4 13 0.00029 31.3 2.8 48 57-104 61-121 (370)
275 TIGR03201 dearomat_had 6-hydro 52.8 15 0.00033 29.6 3.1 34 69-102 165-200 (349)
276 cd08237 ribitol-5-phosphate_DH 52.8 8.1 0.00018 31.2 1.5 33 70-102 163-199 (341)
277 PF04445 SAM_MT: Putative SAM- 52.8 5.7 0.00012 31.4 0.6 32 73-104 78-109 (234)
278 PRK08223 hypothetical protein; 52.4 20 0.00043 29.2 3.7 47 67-115 23-72 (287)
279 PF02636 Methyltransf_28: Puta 51.6 12 0.00027 29.1 2.3 33 72-104 20-62 (252)
280 TIGR02354 thiF_fam2 thiamine b 51.1 14 0.0003 28.1 2.5 37 66-102 16-55 (200)
281 PRK04690 murD UDP-N-acetylmura 48.2 14 0.0003 31.7 2.3 34 69-102 6-41 (468)
282 PF00899 ThiF: ThiF family; I 47.6 17 0.00036 25.4 2.2 43 71-115 2-47 (135)
283 PRK10611 chemotaxis methyltran 47.5 6.7 0.00014 31.9 0.2 40 72-113 117-166 (287)
284 PRK00141 murD UDP-N-acetylmura 47.5 13 0.00028 31.9 1.9 35 67-102 11-48 (473)
285 COG1004 Ugd Predicted UDP-gluc 47.2 13 0.00027 31.9 1.8 24 80-103 7-34 (414)
286 cd08239 THR_DH_like L-threonin 46.9 22 0.00048 28.3 3.1 35 68-102 161-198 (339)
287 PF04989 CmcI: Cephalosporin h 46.4 32 0.0007 26.7 3.8 54 48-102 11-70 (206)
288 COG0116 Predicted N6-adenine-s 46.3 8.9 0.00019 32.5 0.7 58 58-117 179-277 (381)
289 KOG1098 Putative SAM-dependent 46.0 24 0.00052 32.1 3.4 40 70-110 44-86 (780)
290 PF07091 FmrO: Ribosomal RNA m 45.8 15 0.00033 29.4 2.0 33 71-103 106-140 (251)
291 PRK08328 hypothetical protein; 45.2 15 0.00032 28.6 1.8 46 67-114 23-71 (231)
292 TIGR02355 moeB molybdopterin s 44.5 17 0.00038 28.4 2.1 47 67-115 20-69 (240)
293 cd01075 NAD_bind_Leu_Phe_Val_D 44.5 28 0.00061 26.4 3.2 36 66-103 23-62 (200)
294 COG2384 Predicted SAM-dependen 44.4 8.8 0.00019 30.3 0.4 44 70-115 16-61 (226)
295 PRK08644 thiamine biosynthesis 44.1 18 0.00039 27.7 2.1 46 66-113 23-71 (212)
296 COG1179 Dinucleotide-utilizing 44.1 16 0.00034 29.5 1.8 44 67-112 26-72 (263)
297 PRK01438 murD UDP-N-acetylmura 43.3 16 0.00035 31.1 1.9 36 67-102 12-49 (480)
298 cd00757 ThiF_MoeB_HesA_family 43.2 19 0.00042 27.7 2.2 47 66-114 16-65 (228)
299 cd08281 liver_ADH_like1 Zinc-d 42.8 19 0.00041 29.3 2.2 35 68-102 189-226 (371)
300 COG1062 AdhC Zn-dependent alco 42.7 16 0.00036 30.7 1.8 34 70-103 185-221 (366)
301 cd08283 FDH_like_1 Glutathione 42.5 25 0.00055 28.9 2.9 35 68-102 182-219 (386)
302 PF13578 Methyltransf_24: Meth 42.4 11 0.00025 24.9 0.7 28 75-102 1-33 (106)
303 PRK07411 hypothetical protein; 42.2 17 0.00037 30.6 1.8 48 67-116 34-84 (390)
304 TIGR02356 adenyl_thiF thiazole 41.8 13 0.00029 28.1 1.1 46 66-113 16-64 (202)
305 PF01861 DUF43: Protein of unk 41.8 36 0.00078 27.2 3.5 56 46-103 21-78 (243)
306 PRK12771 putative glutamate sy 41.5 16 0.00035 31.9 1.6 33 70-102 136-170 (564)
307 TIGR02818 adh_III_F_hyde S-(hy 41.2 16 0.00035 29.8 1.6 34 69-102 184-220 (368)
308 TIGR02822 adh_fam_2 zinc-bindi 41.2 25 0.00054 28.3 2.6 33 70-102 165-199 (329)
309 PRK05597 molybdopterin biosynt 40.7 22 0.00047 29.5 2.2 49 66-116 23-74 (355)
310 PRK12475 thiamine/molybdopteri 40.5 24 0.00051 29.2 2.4 47 66-114 19-68 (338)
311 PF12242 Eno-Rase_NADH_b: NAD( 40.4 32 0.0007 22.7 2.5 41 60-101 28-73 (78)
312 PRK00536 speE spermidine synth 40.4 11 0.00024 30.2 0.5 40 71-112 73-112 (262)
313 PF01739 CheR: CheR methyltran 40.3 7.4 0.00016 29.7 -0.6 37 72-110 33-80 (196)
314 PRK01710 murD UDP-N-acetylmura 40.0 19 0.00041 30.6 1.9 33 69-102 12-47 (458)
315 TIGR01202 bchC 2-desacetyl-2-h 40.0 18 0.00039 28.8 1.6 33 70-102 144-179 (308)
316 cd08230 glucose_DH Glucose deh 39.9 28 0.00061 28.1 2.7 32 69-100 171-204 (355)
317 PRK01368 murD UDP-N-acetylmura 39.6 18 0.0004 30.9 1.7 33 70-102 5-38 (454)
318 PLN02740 Alcohol dehydrogenase 39.6 18 0.0004 29.6 1.6 35 68-102 196-233 (381)
319 PRK12837 3-ketosteroid-delta-1 39.3 17 0.00036 31.5 1.4 32 71-102 7-39 (513)
320 PRK14192 bifunctional 5,10-met 39.2 34 0.00075 27.6 3.1 44 58-101 146-192 (283)
321 COG0031 CysK Cysteine synthase 39.1 33 0.00071 28.2 3.0 69 10-83 6-75 (300)
322 PRK01390 murD UDP-N-acetylmura 39.1 21 0.00045 30.3 1.9 34 69-102 7-42 (460)
323 PF00890 FAD_binding_2: FAD bi 38.7 16 0.00034 30.2 1.1 30 74-103 2-33 (417)
324 PF08515 TGF_beta_GS: Transfor 38.5 18 0.00039 19.4 0.9 10 78-87 14-23 (29)
325 PLN02586 probable cinnamyl alc 38.5 20 0.00043 29.3 1.7 33 70-102 183-217 (360)
326 KOG0022 Alcohol dehydrogenase, 38.5 22 0.00047 29.9 1.8 34 70-103 192-228 (375)
327 TIGR00561 pntA NAD(P) transhyd 38.2 19 0.00041 31.7 1.5 34 70-103 163-198 (511)
328 PRK06398 aldose dehydrogenase; 38.0 31 0.00067 26.4 2.6 35 68-102 3-40 (258)
329 TIGR00006 S-adenosyl-methyltra 37.5 21 0.00045 29.4 1.6 34 70-103 20-55 (305)
330 PRK15116 sulfur acceptor prote 37.2 25 0.00053 28.3 2.0 46 67-114 26-74 (268)
331 COG3510 CmcI Cephalosporin hyd 36.6 67 0.0015 25.2 4.2 54 48-102 48-107 (237)
332 cd05191 NAD_bind_amino_acid_DH 36.6 46 0.00099 21.4 2.9 33 68-100 20-55 (86)
333 cd01079 NAD_bind_m-THF_DH NAD 36.3 59 0.0013 25.1 3.8 52 51-102 32-96 (197)
334 PRK06153 hypothetical protein; 36.3 27 0.00058 29.8 2.1 45 67-113 172-219 (393)
335 cd00755 YgdL_like Family of ac 35.6 24 0.00053 27.6 1.7 46 67-114 7-55 (231)
336 PRK08306 dipicolinate synthase 35.2 40 0.00088 27.2 2.9 35 68-102 149-185 (296)
337 PRK05600 thiamine biosynthesis 35.2 30 0.00066 28.9 2.3 48 66-115 36-86 (370)
338 PRK14175 bifunctional 5,10-met 34.9 45 0.00097 27.1 3.1 52 51-102 137-192 (286)
339 PRK08862 short chain dehydroge 34.6 33 0.00072 26.0 2.3 34 69-102 3-39 (227)
340 PF03492 Methyltransf_7: SAM d 34.5 20 0.00042 29.6 1.0 32 72-103 18-67 (334)
341 KOG0725 Reductases with broad 34.3 38 0.00083 26.9 2.7 36 68-103 5-43 (270)
342 PF00145 DNA_methylase: C-5 cy 34.2 25 0.00055 27.5 1.6 40 73-114 2-42 (335)
343 TIGR01381 E1_like_apg7 E1-like 34.1 25 0.00055 32.0 1.7 43 68-112 335-380 (664)
344 PRK07878 molybdopterin biosynt 33.9 30 0.00065 29.1 2.0 47 67-115 38-87 (392)
345 COG1233 Phytoene dehydrogenase 33.6 28 0.0006 30.0 1.9 31 72-102 4-36 (487)
346 TIGR03451 mycoS_dep_FDH mycoth 33.4 26 0.00057 28.3 1.6 34 69-102 175-211 (358)
347 PRK06057 short chain dehydroge 33.0 39 0.00085 25.6 2.5 34 69-102 5-41 (255)
348 cd05188 MDR Medium chain reduc 32.7 74 0.0016 23.7 3.9 34 69-102 133-168 (271)
349 PRK03806 murD UDP-N-acetylmura 32.4 28 0.00061 29.2 1.7 34 70-103 5-40 (438)
350 PF01494 FAD_binding_3: FAD bi 32.4 22 0.00048 27.8 1.0 31 73-103 3-35 (356)
351 TIGR00675 dcm DNA-methyltransf 32.2 15 0.00032 29.9 -0.0 30 74-103 1-31 (315)
352 PLN02178 cinnamyl-alcohol dehy 32.0 28 0.0006 28.8 1.5 33 70-102 178-212 (375)
353 PRK08339 short chain dehydroge 32.0 41 0.00088 25.9 2.4 34 69-102 6-42 (263)
354 PF07101 DUF1363: Protein of u 32.0 19 0.00041 25.0 0.4 11 75-85 7-17 (124)
355 PRK05690 molybdopterin biosynt 31.1 36 0.00078 26.7 2.0 47 67-115 28-77 (245)
356 PRK04176 ribulose-1,5-biphosph 30.5 58 0.0013 25.6 3.1 33 71-103 25-59 (257)
357 KOG2017 Molybdopterin synthase 30.4 38 0.00081 28.9 2.0 42 69-112 64-108 (427)
358 PLN03154 putative allyl alcoho 30.2 34 0.00073 27.8 1.7 34 69-102 157-193 (348)
359 PF05575 V_cholerae_RfbT: Vibr 30.1 47 0.001 25.6 2.4 49 70-120 79-129 (286)
360 PRK06523 short chain dehydroge 29.7 57 0.0012 24.7 2.9 35 68-102 6-43 (260)
361 PRK06172 short chain dehydroge 29.6 48 0.001 25.0 2.4 34 69-102 5-41 (253)
362 PRK07688 thiamine/molybdopteri 29.5 40 0.00088 27.8 2.1 45 67-113 20-67 (339)
363 PF00107 ADH_zinc_N: Zinc-bind 29.3 13 0.00028 25.2 -0.7 23 81-103 2-25 (130)
364 cd01492 Aos1_SUMO Ubiquitin ac 29.3 72 0.0016 24.1 3.3 44 67-114 17-65 (197)
365 PRK14191 bifunctional 5,10-met 29.3 71 0.0015 26.0 3.4 51 51-101 136-190 (285)
366 PRK05867 short chain dehydroge 29.2 45 0.00097 25.2 2.2 34 69-102 7-43 (253)
367 PF01189 Nol1_Nop2_Fmu: NOL1/N 29.0 30 0.00065 27.7 1.2 54 47-103 65-121 (283)
368 PF05891 Methyltransf_PK: AdoM 28.9 23 0.00049 27.8 0.5 34 70-103 55-89 (218)
369 COG0771 MurD UDP-N-acetylmuram 28.8 47 0.001 28.8 2.4 37 68-104 4-42 (448)
370 PF00743 FMO-like: Flavin-bind 28.8 36 0.00078 29.9 1.8 19 63-81 175-193 (531)
371 COG0144 Sun tRNA and rRNA cyto 28.8 31 0.00067 28.7 1.3 44 70-115 156-203 (355)
372 PRK12845 3-ketosteroid-delta-1 28.6 33 0.00071 30.3 1.5 31 72-102 17-48 (564)
373 KOG0821 Predicted ribosomal RN 28.5 93 0.002 25.1 3.8 41 62-102 42-83 (326)
374 PRK10792 bifunctional 5,10-met 28.2 77 0.0017 25.8 3.4 52 51-102 138-193 (285)
375 KOG1253 tRNA methyltransferase 28.2 6.8 0.00015 34.4 -2.7 45 71-117 110-157 (525)
376 cd08300 alcohol_DH_class_III c 28.0 36 0.00078 27.7 1.6 33 70-102 186-221 (368)
377 PRK09242 tropinone reductase; 28.0 48 0.001 25.1 2.2 35 68-102 6-43 (257)
378 TIGR01832 kduD 2-deoxy-D-gluco 27.7 55 0.0012 24.5 2.4 34 69-102 3-39 (248)
379 PRK07792 fabG 3-ketoacyl-(acyl 27.7 54 0.0012 26.0 2.5 35 68-102 9-46 (306)
380 smart00467 GS GS motif. Aa app 27.6 32 0.00069 18.6 0.8 9 78-86 13-21 (30)
381 PRK07035 short chain dehydroge 27.6 51 0.0011 24.8 2.3 34 69-102 6-42 (252)
382 PRK07877 hypothetical protein; 27.5 42 0.0009 30.9 2.0 43 68-112 104-149 (722)
383 PRK05876 short chain dehydroge 27.4 55 0.0012 25.5 2.5 34 69-102 4-40 (275)
384 PRK14176 bifunctional 5,10-met 27.3 86 0.0019 25.6 3.6 52 51-102 143-198 (287)
385 cd01487 E1_ThiF_like E1_ThiF_l 27.3 41 0.00088 24.9 1.6 40 73-114 1-43 (174)
386 PRK06171 sorbitol-6-phosphate 27.1 61 0.0013 24.6 2.6 34 69-102 7-43 (266)
387 cd05311 NAD_bind_2_malic_enz N 26.9 74 0.0016 24.6 3.1 49 54-102 5-61 (226)
388 PRK02318 mannitol-1-phosphate 26.8 27 0.00058 29.1 0.6 39 72-112 1-42 (381)
389 cd08231 MDR_TM0436_like Hypoth 26.7 74 0.0016 25.5 3.1 31 70-102 177-212 (361)
390 COG0773 MurC UDP-N-acetylmuram 26.6 33 0.00071 29.9 1.1 25 79-103 16-42 (459)
391 PF04723 GRDA: Glycine reducta 26.4 78 0.0017 23.3 2.8 31 68-98 2-36 (150)
392 PF01488 Shikimate_DH: Shikima 26.2 50 0.0011 23.1 1.9 36 67-102 8-46 (135)
393 PRK06300 enoyl-(acyl carrier p 26.2 58 0.0013 26.2 2.4 34 68-101 5-43 (299)
394 PRK03525 crotonobetainyl-CoA:c 26.0 32 0.0007 29.1 1.0 33 68-100 11-45 (405)
395 PRK12481 2-deoxy-D-gluconate 3 26.0 57 0.0012 24.8 2.3 34 69-102 6-42 (251)
396 PRK14106 murD UDP-N-acetylmura 25.9 55 0.0012 27.4 2.4 32 69-102 3-38 (450)
397 PRK07523 gluconate 5-dehydroge 25.8 58 0.0013 24.6 2.3 34 68-102 7-44 (255)
398 TIGR02622 CDP_4_6_dhtase CDP-g 25.8 69 0.0015 25.7 2.8 32 70-102 3-38 (349)
399 PRK06475 salicylate hydroxylas 25.8 40 0.00087 27.8 1.5 31 72-102 3-35 (400)
400 PF01262 AlaDh_PNT_C: Alanine 25.7 34 0.00074 24.9 0.9 35 69-103 18-54 (168)
401 PRK14851 hypothetical protein; 25.6 48 0.001 30.2 2.0 47 66-114 38-87 (679)
402 PRK12367 short chain dehydroge 25.6 56 0.0012 25.2 2.2 36 67-102 10-48 (245)
403 KOG3045 Predicted RNA methylas 25.5 77 0.0017 26.1 2.9 34 70-103 180-222 (325)
404 PRK07236 hypothetical protein; 25.5 45 0.00097 27.3 1.7 32 71-102 6-39 (386)
405 TIGR00518 alaDH alanine dehydr 25.4 42 0.00091 28.0 1.5 33 70-102 166-200 (370)
406 PRK08762 molybdopterin biosynt 25.3 42 0.00092 27.9 1.5 45 68-114 132-179 (376)
407 TIGR00292 thiazole biosynthesi 25.3 84 0.0018 24.7 3.1 34 70-103 20-55 (254)
408 PRK06184 hypothetical protein; 25.2 45 0.00097 28.5 1.7 32 72-103 4-37 (502)
409 PF02882 THF_DHG_CYH_C: Tetrah 25.2 90 0.002 23.1 3.1 50 53-102 17-70 (160)
410 KOG3115 Methyltransferase-like 25.2 51 0.0011 26.1 1.8 20 72-91 62-81 (249)
411 PRK05786 fabG 3-ketoacyl-(acyl 25.1 61 0.0013 24.0 2.3 34 69-102 3-39 (238)
412 TIGR01087 murD UDP-N-acetylmur 24.8 46 0.001 27.8 1.7 29 74-103 2-33 (433)
413 PRK07063 short chain dehydroge 24.7 65 0.0014 24.4 2.4 34 69-102 5-41 (260)
414 PRK05717 oxidoreductase; Valid 24.5 65 0.0014 24.4 2.4 36 67-102 6-44 (255)
415 PRK08703 short chain dehydroge 24.5 73 0.0016 23.8 2.6 34 69-102 4-40 (239)
416 PRK08993 2-deoxy-D-gluconate 3 24.4 72 0.0016 24.2 2.6 35 68-102 7-44 (253)
417 KOG2918 Carboxymethyl transfer 24.3 64 0.0014 26.9 2.3 56 44-103 64-124 (335)
418 PRK08303 short chain dehydroge 24.2 66 0.0014 25.7 2.4 34 68-101 5-41 (305)
419 PRK09126 hypothetical protein; 24.1 44 0.00096 27.2 1.4 30 73-102 5-36 (392)
420 COG0863 DNA modification methy 24.1 1.2E+02 0.0027 23.5 3.9 46 57-103 210-255 (302)
421 PF03486 HI0933_like: HI0933-l 24.0 36 0.00079 28.9 0.9 31 73-103 2-34 (409)
422 PRK06113 7-alpha-hydroxysteroi 23.9 67 0.0015 24.3 2.3 34 69-102 9-45 (255)
423 PRK08265 short chain dehydroge 23.9 69 0.0015 24.4 2.4 34 69-102 4-40 (261)
424 PLN02827 Alcohol dehydrogenase 23.8 48 0.001 27.2 1.6 35 68-102 191-228 (378)
425 PRK06935 2-deoxy-D-gluconate 3 23.8 69 0.0015 24.3 2.4 34 69-102 13-49 (258)
426 TIGR01813 flavo_cyto_c flavocy 23.6 46 0.001 27.8 1.5 29 74-102 2-33 (439)
427 PRK07231 fabG 3-ketoacyl-(acyl 23.6 76 0.0016 23.6 2.5 34 69-102 3-39 (251)
428 PRK07233 hypothetical protein; 23.5 45 0.00097 27.3 1.3 30 74-103 2-33 (434)
429 PF06564 YhjQ: YhjQ protein; 23.4 34 0.00073 27.2 0.6 25 79-103 11-41 (243)
430 cd08301 alcohol_DH_plants Plan 23.4 50 0.0011 26.7 1.6 33 68-102 185-222 (369)
431 PRK11430 putative CoA-transfer 23.4 41 0.0009 28.2 1.1 33 68-100 9-43 (381)
432 PRK07890 short chain dehydroge 23.3 78 0.0017 23.8 2.6 34 69-102 3-39 (258)
433 PRK07889 enoyl-(acyl carrier p 23.3 85 0.0018 24.0 2.8 34 69-102 5-43 (256)
434 COG5379 BtaA S-adenosylmethion 23.3 73 0.0016 26.7 2.5 34 70-103 63-96 (414)
435 PF13450 NAD_binding_8: NAD(P) 23.1 48 0.001 20.5 1.1 24 80-103 3-30 (68)
436 PRK12769 putative oxidoreducta 23.0 51 0.0011 29.4 1.7 33 70-102 326-360 (654)
437 TIGR03325 BphB_TodD cis-2,3-di 22.9 74 0.0016 24.2 2.4 34 69-102 3-39 (262)
438 PRK06200 2,3-dihydroxy-2,3-dih 22.9 68 0.0015 24.4 2.2 34 69-102 4-40 (263)
439 PRK06125 short chain dehydroge 22.9 74 0.0016 24.1 2.4 34 69-102 5-41 (259)
440 PRK12823 benD 1,6-dihydroxycyc 22.8 79 0.0017 23.9 2.5 35 68-102 5-42 (260)
441 PRK07791 short chain dehydroge 22.8 73 0.0016 24.9 2.4 33 69-101 4-39 (286)
442 PRK08401 L-aspartate oxidase; 22.8 49 0.0011 28.2 1.4 30 73-102 3-34 (466)
443 PRK10037 cell division protein 22.7 34 0.00074 26.4 0.5 18 86-103 24-41 (250)
444 PRK08013 oxidoreductase; Provi 22.7 53 0.0011 27.1 1.6 32 72-103 4-37 (400)
445 PRK08085 gluconate 5-dehydroge 22.7 76 0.0017 23.9 2.4 34 69-102 7-43 (254)
446 PRK08163 salicylate hydroxylas 22.6 52 0.0011 26.8 1.5 31 72-102 5-37 (396)
447 PRK07478 short chain dehydroge 22.6 81 0.0017 23.8 2.5 34 69-102 4-40 (254)
448 cd08238 sorbose_phosphate_red 22.5 48 0.001 27.5 1.3 33 70-102 175-213 (410)
449 PRK07364 2-octaprenyl-6-methox 22.3 50 0.0011 27.1 1.4 32 72-103 19-52 (415)
450 PRK06753 hypothetical protein; 22.2 53 0.0011 26.5 1.5 30 73-102 2-33 (373)
451 TIGR02032 GG-red-SF geranylger 22.2 51 0.0011 25.1 1.4 29 74-102 3-33 (295)
452 PF11599 AviRa: RRNA methyltra 22.2 34 0.00074 27.2 0.4 42 73-116 54-99 (246)
453 cd08254 hydroxyacyl_CoA_DH 6-h 22.0 54 0.0012 25.6 1.5 33 70-102 165-199 (338)
454 PRK07121 hypothetical protein; 22.0 50 0.0011 28.2 1.4 31 72-102 21-53 (492)
455 PRK08274 tricarballylate dehyd 22.0 51 0.0011 27.8 1.4 31 72-102 5-37 (466)
456 COG2072 TrkA Predicted flavopr 21.9 76 0.0016 27.1 2.4 37 66-102 170-208 (443)
457 PF11899 DUF3419: Protein of u 21.9 93 0.002 26.3 2.9 50 50-104 19-69 (380)
458 cd02040 NifH NifH gene encodes 21.8 37 0.0008 26.1 0.5 17 87-103 24-40 (270)
459 PRK14183 bifunctional 5,10-met 21.8 1.3E+02 0.0029 24.4 3.7 50 51-100 136-189 (281)
460 PRK02006 murD UDP-N-acetylmura 21.8 66 0.0014 27.6 2.1 34 69-102 5-40 (498)
461 PRK12409 D-amino acid dehydrog 21.8 54 0.0012 26.9 1.5 30 73-102 3-34 (410)
462 PRK06124 gluconate 5-dehydroge 21.8 80 0.0017 23.8 2.4 35 68-102 8-45 (256)
463 PRK05868 hypothetical protein; 21.8 56 0.0012 26.8 1.6 31 73-103 3-35 (372)
464 PRK07062 short chain dehydroge 21.7 81 0.0018 23.9 2.4 35 68-102 5-42 (265)
465 cd08296 CAD_like Cinnamyl alco 21.7 95 0.0021 24.6 2.9 32 69-102 162-197 (333)
466 PRK07856 short chain dehydroge 21.7 80 0.0017 23.8 2.3 34 69-102 4-40 (252)
467 PRK12829 short chain dehydroge 21.7 1.1E+02 0.0023 23.0 3.1 35 68-102 8-45 (264)
468 PRK04308 murD UDP-N-acetylmura 21.7 59 0.0013 27.4 1.7 33 69-103 3-39 (445)
469 PRK13265 glycine/sarcosine/bet 21.7 1.1E+02 0.0024 22.6 2.8 31 68-98 3-37 (154)
470 PRK10309 galactitol-1-phosphat 21.6 58 0.0013 26.0 1.6 34 69-102 159-195 (347)
471 PRK07814 short chain dehydroge 21.5 86 0.0019 23.9 2.5 34 69-102 8-44 (263)
472 cd08255 2-desacetyl-2-hydroxye 21.5 1.2E+02 0.0026 23.1 3.3 33 70-102 97-132 (277)
473 PRK07045 putative monooxygenas 21.4 54 0.0012 26.8 1.4 31 73-103 7-39 (388)
474 PRK06841 short chain dehydroge 21.4 86 0.0019 23.5 2.5 34 69-102 13-49 (255)
475 cd08277 liver_alcohol_DH_like 21.3 57 0.0012 26.4 1.5 34 69-102 183-219 (365)
476 PRK12548 shikimate 5-dehydroge 21.3 1.2E+02 0.0025 24.3 3.3 34 68-102 123-160 (289)
477 PF01269 Fibrillarin: Fibrilla 21.2 1.2E+02 0.0025 24.1 3.1 60 44-103 43-109 (229)
478 PRK12549 shikimate 5-dehydroge 21.2 92 0.002 24.9 2.7 35 68-102 124-161 (284)
479 KOG1207 Diacetyl reductase/L-x 21.1 98 0.0021 24.1 2.6 35 69-103 5-42 (245)
480 PRK12834 putative FAD-binding 21.1 53 0.0012 28.6 1.4 31 72-102 5-37 (549)
481 COG0665 DadA Glycine/D-amino a 21.1 59 0.0013 26.2 1.6 31 72-102 5-37 (387)
482 PRK14170 bifunctional 5,10-met 21.1 1.5E+02 0.0032 24.1 3.9 52 51-102 136-191 (284)
483 COG0677 WecC UDP-N-acetyl-D-ma 21.0 59 0.0013 28.1 1.6 31 73-103 11-43 (436)
484 PRK14189 bifunctional 5,10-met 21.0 1.3E+02 0.0029 24.4 3.6 51 51-101 137-191 (285)
485 PLN02240 UDP-glucose 4-epimera 21.0 88 0.0019 24.9 2.5 31 69-100 3-37 (352)
486 PRK05872 short chain dehydroge 20.9 80 0.0017 24.8 2.3 35 68-102 6-43 (296)
487 PRK06701 short chain dehydroge 20.9 85 0.0018 24.6 2.4 35 68-102 43-80 (290)
488 PRK07208 hypothetical protein; 20.9 61 0.0013 27.3 1.7 31 72-102 5-37 (479)
489 PRK06138 short chain dehydroge 20.7 91 0.002 23.3 2.4 34 69-102 3-39 (252)
490 TIGR03206 benzo_BadH 2-hydroxy 20.7 86 0.0019 23.3 2.3 34 69-102 1-37 (250)
491 PRK08217 fabG 3-ketoacyl-(acyl 20.6 83 0.0018 23.4 2.2 34 69-102 3-39 (253)
492 PRK07533 enoyl-(acyl carrier p 20.5 1.1E+02 0.0025 23.3 3.0 35 68-102 7-46 (258)
493 PF12831 FAD_oxidored: FAD dep 20.5 48 0.001 27.9 1.0 30 74-103 2-33 (428)
494 PRK07576 short chain dehydroge 20.4 84 0.0018 24.1 2.3 34 69-102 7-43 (264)
495 cd05213 NAD_bind_Glutamyl_tRNA 20.4 1E+02 0.0022 24.9 2.8 34 69-102 176-212 (311)
496 TIGR03253 oxalate_frc formyl-C 20.3 47 0.001 28.1 0.9 32 69-100 4-37 (415)
497 cd01078 NAD_bind_H4MPT_DH NADP 20.3 1.2E+02 0.0026 22.3 3.0 37 66-102 23-62 (194)
498 PRK14187 bifunctional 5,10-met 20.3 1.5E+02 0.0033 24.2 3.8 52 51-102 139-194 (294)
499 cd08232 idonate-5-DH L-idonate 20.2 1.2E+02 0.0025 24.0 3.1 33 70-102 165-200 (339)
500 TIGR02733 desat_CrtD C-3',4' d 20.2 62 0.0013 27.5 1.6 31 72-102 2-34 (492)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.83 E-value=1.4e-21 Score=146.64 Aligned_cols=98 Identities=31% Similarity=0.449 Sum_probs=56.8
Q ss_pred eehhhhhhcccccceeeeehhHHHHHHHHhh------hcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcccee
Q 032395 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEL 106 (141)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~------~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~ 106 (141)
..+.|.+.....+|.++||++++|++|+..+ ...+++++|||||||+|++||+++++ +++|++||+++ +
T Consensus 4 ~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~ 80 (173)
T PF10294_consen 4 KTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---V 80 (173)
T ss_dssp -------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----H
T ss_pred cccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---h
Confidence 3488888888899999999999999999994 56789999999999999999999998 45999999997 6
Q ss_pred ccccCCCchhhhhhhccCCcceEEEEEEeEE
Q 032395 107 LMTSLPPSHICSRVLQDQSSLRLIIIEVGII 137 (141)
Q Consensus 107 l~n~~~N~~~n~~~~~~~~~v~v~~l~WG~~ 137 (141)
+++++.|+..|.. ....++.+..|+||..
T Consensus 81 l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~ 109 (173)
T PF10294_consen 81 LELLRRNIELNGS--LLDGRVSVRPLDWGDE 109 (173)
T ss_dssp HHHHHHHHHTT----------EEEE--TTS-
T ss_pred hHHHHHHHHhccc--cccccccCcEEEecCc
Confidence 7777777777754 2247899999999863
No 2
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=4e-14 Score=108.22 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=82.4
Q ss_pred cCcccCCcceeeeeeeecCCCCCCceehhhhhh-----cccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCc
Q 032395 10 EDEMTDKHMTTVSQHYFVDESDKPSFSIAIIEN-----MKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLP 84 (141)
Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~~~~~~~i~i~~~-----~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~ 84 (141)
++-.|+++.+.++-+.-+.. +.+.-+..+. .++.++...|.+++.+|+|+..+++.++||+|||+|+|+|++
T Consensus 17 ~~~~p~p~~Pe~rl~la~~~---~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLv 93 (218)
T COG3897 17 LGLLPPPHVPEIRLHLADEA---HELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLV 93 (218)
T ss_pred cccCCCCCCchhheeecccc---cchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChH
Confidence 55666777665554443332 3333333322 235588899999999999999999999999999999999999
Q ss_pred hhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395 85 GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 85 ~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
+|++++.|+ .|+.+|+.+ -++.++..|++.|.
T Consensus 94 aIAaa~aGA~~v~a~d~~P--~~~~ai~lNa~ang 126 (218)
T COG3897 94 AIAAARAGAAEVVAADIDP--WLEQAIRLNAAANG 126 (218)
T ss_pred HHHHHHhhhHHHHhcCCCh--HHHHHhhcchhhcc
Confidence 999999999 999999998 47889999999885
No 3
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.27 E-value=7.2e-13 Score=108.54 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=76.9
Q ss_pred ceeeeeeeecCCCCCCceehhhhhhccc-ccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ce
Q 032395 18 MTTVSQHYFVDESDKPSFSIAIIENMKE-EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NV 95 (141)
Q Consensus 18 ~~~~~~~~f~~~~~~~~~~i~i~~~~~~-~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~V 95 (141)
......+||.... .+.|++.+-. ..-...... .+.++...|++|+|||+|||||++++++|+.|| +|
T Consensus 18 d~~~~~~Yf~sY~-----~~~iheeML~D~VRt~aYr~------~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V 86 (346)
T KOG1499|consen 18 DMTSDDYYFDSYA-----HFGIHEEMLKDSVRTLAYRN------AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKV 86 (346)
T ss_pred ccchhhhhhhhhh-----chHHHHHHHhhhhhHHHHHH------HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceE
Confidence 3346667777763 2677777632 222222222 277778899999999999999999999999999 99
Q ss_pred EEccCCccceecc-ccCCCchhh------hhhh--cc-CCcceEEEEEE-eEEeec
Q 032395 96 TLTDDSNRIELLM-TSLPPSHIC------SRVL--QD-QSSLRLIIIEV-GIILLS 140 (141)
Q Consensus 96 v~tD~~~~~~~l~-n~~~N~~~n------~~~~--~~-~~~v~v~~l~W-G~~ll~ 140 (141)
++.|.++..+... .++.|...+ +++. .. ..+|++++.+| ||+||.
T Consensus 87 ~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~ 142 (346)
T KOG1499|consen 87 YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY 142 (346)
T ss_pred EEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHH
Confidence 9999998543322 334443322 2221 11 48999999999 999984
No 4
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.27 E-value=9e-13 Score=106.70 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=66.4
Q ss_pred CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL 111 (141)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~ 111 (141)
..+.|.|.+.+..++|.| |++....++|.+. ..++++|||+|||||+++|+++++|| +|+++|+++ .++++++
T Consensus 128 ~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 456688888888888887 7888888888775 45889999999999999999999999 899999999 4777888
Q ss_pred CCchhhh
Q 032395 112 PPSHICS 118 (141)
Q Consensus 112 ~N~~~n~ 118 (141)
.|+.+|.
T Consensus 202 ~N~~~N~ 208 (295)
T PF06325_consen 202 ENAELNG 208 (295)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8888773
No 5
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.20 E-value=9.9e-12 Score=98.32 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=76.3
Q ss_pred ehhhhhhcccccceeeeehhHHHHHHHHhhhc------ccc-----cccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395 36 SIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 36 ~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~------~~~-----~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
...+..........++|+++..++.++...+. .+. .++|||||+|||++|+.+|+ .+++|+.||...
T Consensus 41 ~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~- 119 (248)
T KOG2793|consen 41 KTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK- 119 (248)
T ss_pred eeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-
Confidence 34555555678899999999999999888655 222 34699999999999999998 677999999998
Q ss_pred ceeccccCCCchhhhhh-hccCCcceEEEEEEeEEe
Q 032395 104 IELLMTSLPPSHICSRV-LQDQSSLRLIIIEVGIIL 138 (141)
Q Consensus 104 ~~~l~n~~~N~~~n~~~-~~~~~~v~v~~l~WG~~l 138 (141)
.+.++..|...|... .....++.|.+|.||..+
T Consensus 120 --~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~ 153 (248)
T KOG2793|consen 120 --VVENLKFNRDKNNIALNQLGGSVIVAILVWGNAL 153 (248)
T ss_pred --hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcc
Confidence 455555665555322 333569999999999654
No 6
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-11 Score=100.58 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=63.1
Q ss_pred ceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCC
Q 032395 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~ 112 (141)
.+.|+|.+.+..++|+| |++....+++.+. ..++++|||+|||+|+++|+++++|| +|+++|+++. +++..+.
T Consensus 130 ~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~e 203 (300)
T COG2264 130 ELNIELDPGLAFGTGTH--PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARE 203 (300)
T ss_pred ceEEEEccccccCCCCC--hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHH
Confidence 66688888877888876 7777777777664 33899999999999999999999999 7999999994 5665566
Q ss_pred Cchhh
Q 032395 113 PSHIC 117 (141)
Q Consensus 113 N~~~n 117 (141)
|+.+|
T Consensus 204 Na~~N 208 (300)
T COG2264 204 NARLN 208 (300)
T ss_pred HHHHc
Confidence 66666
No 7
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=87.23 Aligned_cols=72 Identities=39% Similarity=0.611 Sum_probs=60.0
Q ss_pred ccceeeeehhHHHHHHHHhh---hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc-c--eeccccCCCchhh
Q 032395 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR-I--ELLMTSLPPSHIC 117 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~~---~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~-~--~~l~n~~~N~~~n 117 (141)
..|+++|.|+..|..++... .-.|.+|+|||||||+|++++.+.+.|+ .|.++|++.. + ..+.|+..|+..+
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~ 167 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAG 167 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhh
Confidence 57999999999999999865 4567999999999999999999999996 9999999983 1 2344666666555
No 8
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.8e-09 Score=82.30 Aligned_cols=71 Identities=28% Similarity=0.352 Sum_probs=57.1
Q ss_pred ccccceeeeehhHHHHHHHHhh---hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395 44 KEEYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 44 ~~~~g~~~W~as~~la~~l~~~---~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
.+..++.++.+..-+|.++... ...+.|+.|+|||||||++++.++.+|+ +|++.|.++ +.++.++.|+..
T Consensus 16 ~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~ 90 (198)
T COG2263 16 NPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEE 90 (198)
T ss_pred CCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHh
Confidence 4566677777777777776553 4567899999999999999999999998 999999999 577777777653
No 9
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=2.4e-09 Score=80.20 Aligned_cols=70 Identities=29% Similarity=0.437 Sum_probs=58.7
Q ss_pred ccc-eeeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 46 EYG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 46 ~~g-~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
++| ..+||+..+||.++.+++..+.|++|+|||.| ||+.|+++|.... .|.+||-++ +.++|+++-..+|
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n 77 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSN 77 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhcc
Confidence 344 47999999999999999999999999999999 9999999887643 899999998 5677665544444
No 10
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.65 E-value=8.3e-09 Score=76.79 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=48.3
Q ss_pred ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+++..|++++..+ ++++|||+|||+|.+++.+++.+. +|+++|.++ .+++.++.|+..|
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n 78 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERN 78 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhc
Confidence 3667788888765 778999999999999999999876 599999999 4677666766665
No 11
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.59 E-value=1.3e-08 Score=80.15 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=59.2
Q ss_pred CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL 111 (141)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~ 111 (141)
....+.|.+.+..++|. ++++..+.+.+... ..++++|||+|||+|++++.+++.|+ +|+++|+++. .++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~--~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ--AVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH--HHHHHH
Confidence 34556777766667776 56777777776653 34789999999999999999999888 6999999994 566566
Q ss_pred CCchhh
Q 032395 112 PPSHIC 117 (141)
Q Consensus 112 ~N~~~n 117 (141)
.|...|
T Consensus 160 ~n~~~~ 165 (250)
T PRK00517 160 ENAELN 165 (250)
T ss_pred HHHHHc
Confidence 665544
No 12
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.58 E-value=1.6e-08 Score=81.28 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=58.0
Q ss_pred CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL 111 (141)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~ 111 (141)
....+.|.+.+..++|.+ ++.....+++... ..++++|||+|||+|++++.+++.|+ +|+++|+++. .++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~--al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL--AVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH--HHHHHH
Confidence 345566777766777765 6666555555543 34789999999999999999999987 8999999984 555555
Q ss_pred CCchhh
Q 032395 112 PPSHIC 117 (141)
Q Consensus 112 ~N~~~n 117 (141)
.|+..|
T Consensus 200 ~n~~~n 205 (288)
T TIGR00406 200 KNAELN 205 (288)
T ss_pred HHHHHc
Confidence 555544
No 13
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=5e-08 Score=72.08 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=57.5
Q ss_pred cccceeeeehhHHHHHHHHh----hhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 45 EEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 45 ~~~g~~~W~as~~la~~l~~----~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
+..++..+++...+|.-|.. ...+++||.+++||||||.+++..+..++ .|++.|+++ ++|+...+|++
T Consensus 19 pk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNae 92 (185)
T KOG3420|consen 19 PKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAE 92 (185)
T ss_pred cchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchH
Confidence 46777788898888886544 24578999999999999999988888888 899999999 68887777764
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.39 E-value=5.3e-08 Score=66.46 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=35.3
Q ss_pred ccccEEEecCCCCCchhhhhh--cCCceEEccCCccceeccccCCCc
Q 032395 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~--~ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
++++|||||||+|..++.+++ .+++|+++|+++. .++.+++|.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~ 45 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE--MLEIARERA 45 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH--HHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 578999999999999999999 6779999999994 455444444
No 15
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.33 E-value=1.8e-07 Score=77.39 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=54.5
Q ss_pred hhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCchhhhhh---------hccCCcceEEEE
Q 032395 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPSHICSRV---------LQDQSSLRLIII 132 (141)
Q Consensus 64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~~~n~~~---------~~~~~~v~v~~l 132 (141)
.+..+|++|.|||+|||+|++++++|+.|| +|.+.+-++..+..+ .++.| .+..++ +..+.+++|++.
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLPEk~DviIS 249 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASN-NLADRITVIPGKIEDIELPEKVDVIIS 249 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcC-CccceEEEccCccccccCchhccEEEe
Confidence 345689999999999999999999999999 999999988544444 33444 333222 123678888888
Q ss_pred EE-eEEe
Q 032395 133 EV-GIIL 138 (141)
Q Consensus 133 ~W-G~~l 138 (141)
+= ||.|
T Consensus 250 EPMG~mL 256 (517)
T KOG1500|consen 250 EPMGYML 256 (517)
T ss_pred ccchhhh
Confidence 75 7765
No 16
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.28 E-value=3.6e-07 Score=69.48 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=41.3
Q ss_pred hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
...+++++||||+||+|.+|+.++..|+ +|++.|.++ ++++.++.|++.|
T Consensus 45 ~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~ 95 (189)
T TIGR00095 45 RPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALL 95 (189)
T ss_pred HHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence 3456899999999999999999999998 899999998 4566666665554
No 17
>PRK04148 hypothetical protein; Provisional
Probab=98.26 E-value=3.9e-07 Score=66.14 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCC-chhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+++|+..+....++++++|+|||+|. ++..+++.|.+|+++|.++.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH
Confidence 478888776555577899999999997 88888899999999999994
No 18
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.6e-07 Score=71.36 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=38.0
Q ss_pred cEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhhh
Q 032395 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
+|||+|||||.+++.+++.+. +|+++|+++ ++++.++.|+..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~ 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNG 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcC
Confidence 799999999999999998765 999999999 57777777776654
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.15 E-value=6.3e-07 Score=66.80 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=36.8
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..++++|||+|||+|..++.++..+.+|+++|+++. .++.++.|..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~ 62 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF--AVKELRENAK 62 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHH
Confidence 446789999999999999999988889999999994 4544444443
No 20
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.13 E-value=2.2e-06 Score=67.25 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=48.4
Q ss_pred eeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.+..++.-|..++......+++++|||+|||||..+..+++.|+ +|++.|.++.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~ 109 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN 109 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH
Confidence 56788889998888876678999999999999999999999988 8999999984
No 21
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.11 E-value=7.8e-07 Score=70.59 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=49.9
Q ss_pred cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCCchhh
Q 032395 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.|++.=-.++.|+.|.... ..++|||||||+|++++++|+. . ++|++.|+.+ +..+.+++|+++|
T Consensus 25 ~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv~ln 91 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNVALN 91 (248)
T ss_pred CccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHHHhC
Confidence 3444444788888887542 4789999999999999999987 5 5999999998 4555666776665
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.11 E-value=9.9e-07 Score=69.58 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=33.6
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+.|++|||+|||.|+++.-+|+.|++|++.|..+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~ 92 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK 92 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChH
Confidence 68999999999999999999999999999999984
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.10 E-value=9.1e-07 Score=74.07 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=35.7
Q ss_pred cccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+.+|||||||+|.+++.+++.. ++|+++|.++. +++.++.|+..|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~--Av~~A~~N~~~n 275 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETN 275 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence 4699999999999999998874 49999999983 555555555444
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.10 E-value=1.2e-06 Score=66.59 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=32.6
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..++.+|||+|||+|..++.+++.|.+|+++|+++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~ 63 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPA 63 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHH
Confidence 346789999999999999999999999999999984
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.07 E-value=2e-06 Score=68.70 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.5
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+.|++|||+|||+|+++.-+|+.|+.|+++|..+.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~ 122 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD 122 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHH
Confidence 34688999999999999999999999999999985
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.04 E-value=1.4e-06 Score=66.32 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.6
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..++++|||+|||+|..++.+++.|++|++.|.++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~ 63 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPM 63 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHH
Confidence 346789999999999999999999999999999984
No 27
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2e-06 Score=69.88 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
++++.++-....+.+|||+|||.|.+|+.+++... +++++|.+. .+++..++|+..|
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N 205 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAAN 205 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHc
Confidence 33444443333444999999999999999999864 999999998 4777777777766
No 28
>PRK14968 putative methyltransferase; Provisional
Probab=98.00 E-value=2.1e-06 Score=63.46 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=40.8
Q ss_pred ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
+-+..|++++.. .++++|||+|||+|..++.+++.+++|+++|.++. .++.+++|
T Consensus 10 ~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~~ 64 (188)
T PRK14968 10 EDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY--AVECAKCN 64 (188)
T ss_pred hhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHH--HHHHHHHH
Confidence 444555555543 47789999999999999998888889999999984 44444333
No 29
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.99 E-value=2.3e-06 Score=73.10 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=44.0
Q ss_pred ccccEEEecCCCCCchhhhhhcC-----C-ceEEccCCccc-eecccc-CCCch------hhhhhh--ccCCcceEEEEE
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRI-ELLMTS-LPPSH------ICSRVL--QDQSSLRLIIIE 133 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g-----a-~Vv~tD~~~~~-~~l~n~-~~N~~------~n~~~~--~~~~~v~v~~l~ 133 (141)
+++.|+++|||+|.++.++++++ + +|++.+.++.. ..++.. +.|.- .++.+. ..+.+++|++.+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE 265 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE 265 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe
Confidence 57899999999999999887765 4 89999999852 334322 22211 112222 226799999999
Q ss_pred E-eEEee
Q 032395 134 V-GIILL 139 (141)
Q Consensus 134 W-G~~ll 139 (141)
| |.|+.
T Consensus 266 lLGsfg~ 272 (448)
T PF05185_consen 266 LLGSFGD 272 (448)
T ss_dssp --BTTBT
T ss_pred ccCCccc
Confidence 9 98874
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.97 E-value=2.3e-06 Score=64.62 Aligned_cols=36 Identities=25% Similarity=0.594 Sum_probs=30.9
Q ss_pred ccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
.+++++|||+|||+|..++.++..+ ++|+++|.++.
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~ 77 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK 77 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH
Confidence 3468999999999999999887664 38999999984
No 31
>PRK14967 putative methyltransferase; Provisional
Probab=97.94 E-value=2.7e-06 Score=65.66 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.+..|++.+... ...++.+|||+|||+|..++.+++.++ +|+++|+++. .++.++.|..
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~--~l~~a~~n~~ 80 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR--AVRSARLNAL 80 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHH
Confidence 345566666543 233578999999999999999998887 9999999983 4554444443
No 32
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.94 E-value=2.5e-06 Score=65.56 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCccceeccccCCCc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
.+..+...+......-++.+|||+|||+|..++.+++... +|+++|.++. .++.++.|+
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~--~~~~A~~~~ 122 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE--LAEKAERRL 122 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 4444555555544455788999999999999998888743 5999999984 444444443
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.93 E-value=4.2e-06 Score=62.76 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=35.0
Q ss_pred cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.++.+|||+|||+|.+++.+++.+ .+|+++|.++. .++.+++|..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~n~~ 76 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD--ALRLIKENRQ 76 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHH
Confidence 367899999999999999888764 38999999984 4544444443
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.93 E-value=3.7e-06 Score=67.44 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=34.9
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
+++++|||+|||+|..++.+++.|.+|+++|.++. .++.++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~--ai~~~~~ 160 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQ--SLENLQE 160 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHH
Confidence 45679999999999999999999999999999984 4444333
No 35
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.88 E-value=5.5e-06 Score=70.34 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..|.+.+.......++.+|||+|||+|..++.+++.+++|+++|.++. .++.++.|+..|
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~--al~~A~~n~~~~ 342 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA--MVERARENARRN 342 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHHc
Confidence 334444444333346789999999999999999998889999999994 565555555433
No 36
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.88 E-value=5.7e-06 Score=67.26 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=37.4
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
.++.+|||+|||+|..++.+++.+++|+++|.++. .++.++.|+..
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~--av~~A~~n~~~ 217 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAE--AIACAKQSAAE 217 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHH
Confidence 35789999999999999999998889999999994 55555554433
No 37
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.88 E-value=4.3e-06 Score=61.87 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+......-.+.+|||+|||+|.++..+++.+++|++.|+++.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~ 46 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPR 46 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHH
Confidence 333333346679999999999999999988779999999984
No 38
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.88 E-value=6.1e-06 Score=65.85 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
+++.+......-++.+|||+|||+|.++..+++.+.+|+++|.++. .++.++.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~--~~~~~~~ 82 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRD--LAPILAE 82 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHH--HHHHHHH
Confidence 4455555434447789999999999999999988889999999994 4443333
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.87 E-value=7.3e-06 Score=56.31 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=33.1
Q ss_pred cccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCC
Q 032395 69 FSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N 113 (141)
-++++|||+|||+|..++.+++. + .+|+++|+++. .++.++.|
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~ 62 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERN 62 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHH
Confidence 35789999999999999988875 3 48999999984 44443333
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.87 E-value=6.4e-06 Score=62.67 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=29.2
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
++++|||+|||+|..++.+++. +++|+++|.++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~ 80 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK 80 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH
Confidence 3789999999999999988763 459999999984
No 41
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.84 E-value=6.5e-06 Score=63.26 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=35.6
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.++++|||||||+|.+++.++..++ +|++.|.++ ++++.++.|+..+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~ 99 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATL 99 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHh
Confidence 4678999999999999996555554 999999998 4555555555443
No 42
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.83 E-value=2e-05 Score=56.41 Aligned_cols=36 Identities=33% Similarity=0.267 Sum_probs=32.3
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..++++|||+|||+|..+..+++.|.+|+++|.++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~ 55 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ 55 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH
Confidence 347889999999999999888889999999999984
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.79 E-value=1.2e-05 Score=65.94 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=32.5
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.++.+|||+|||+|..++.+++.|++|+++|+++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ 177 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAA 177 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHH
Confidence 46789999999999999999999999999999995
No 44
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.79 E-value=5.5e-06 Score=68.01 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.1
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+++.+|||+|||+|.++..+++.|++|+++|.++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~ 164 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDK 164 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH
Confidence 46779999999999999999999999999999984
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.77 E-value=1.1e-05 Score=61.92 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=31.4
Q ss_pred cccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..++..++||||||.|.-++++|+.|.+|++.|.++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~ 63 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPV 63 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHH
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHH
Confidence 3457889999999999999999999999999999994
No 46
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.76 E-value=1.1e-05 Score=67.28 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=38.2
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..+++||||+||+|.+++.++..+++|+++|.++ +.++.++.|+..|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~ 278 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQML 278 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHc
Confidence 3578999999999999999998888999999999 4566555555444
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=1.8e-05 Score=63.95 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=32.9
Q ss_pred cccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
..-+|++|||+|||.|-+++.+|+. |++|+++++++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~ 106 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE 106 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH
Confidence 3347899999999999999999986 789999999985
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.76 E-value=1.2e-05 Score=61.60 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.6
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..++++|||+|||+|..+..+++.+++|+++|.++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~ 88 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ 88 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH
Confidence 457899999999999999999888889999999984
No 49
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.75 E-value=5.4e-06 Score=60.06 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.7
Q ss_pred ccccEEEecCCCCCchhhhh-hc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a-~~--ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.++ +. ++++++.|+++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~ 39 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEE 39 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHH
Confidence 56899999999999999998 44 459999999994
No 50
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.75 E-value=8.8e-06 Score=66.83 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=34.7
Q ss_pred cccEEEecCCCCCchhhhhh-c-CCceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAK-V-GSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~-~-ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+.++||+|||+|.+...++. . ++++++||+++ +.++.++.|++.|
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~N 161 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISAN 161 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhc
Confidence 46899999999976655543 3 56999999998 4677777777666
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.75 E-value=5e-06 Score=57.08 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=34.8
Q ss_pred cccEEEecCCCCCchhhhhhcC-CceEEccCCccceeccccCCCch
Q 032395 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
|.+|||+|||+|...+.+++.+ .++++.|+++. .++..+.|..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~--~~~~a~~~~~ 44 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE--AVELARRNLP 44 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH--HHHHHHHHCH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH--HHHHHHHHHH
Confidence 5689999999999999999998 69999999994 4444444443
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.75 E-value=1.5e-05 Score=62.14 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=30.4
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~ 75 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP 75 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH
Confidence 4678999999999988888888889999999984
No 53
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.73 E-value=1.3e-05 Score=63.55 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+++.+.......++++|||+|||+|.+++.+++.+.+|++.|+++.
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~ 62 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHH
Confidence 34445555444457889999999999999999998889999999984
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.73 E-value=1.5e-05 Score=61.36 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=38.8
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
...+|+.......++++|||+|||+|..+..+++.+++|+++|.++.
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~ 81 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEE 81 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH
Confidence 33456666555567899999999999999988888889999999984
No 55
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.70 E-value=1.7e-05 Score=59.94 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=33.8
Q ss_pred cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
-++.+|||+|||+|..++.+++.. .+|+++|.++. .++.++.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~--~~~~a~~n~ 84 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE--VVNLIRRNC 84 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 367899999999999999887653 59999999984 444444443
No 56
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.69 E-value=1.7e-05 Score=60.65 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR 103 (141)
Q Consensus 55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~ 103 (141)
+..+..++.+....-++.+|||+|||+|..+..+++. +.+|++.|.++.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~ 108 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE 108 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 3344455544433346789999999999999877764 249999999984
No 57
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.68 E-value=9.6e-06 Score=72.64 Aligned_cols=47 Identities=26% Similarity=0.126 Sum_probs=40.2
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.++++|||||||||..++.+++.|+ +|+++|+++ ..++.++.|+..|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~n 584 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALN 584 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence 3689999999999999999999988 799999999 4666666766665
No 58
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.68 E-value=1.7e-05 Score=60.50 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.9
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+..+..++......-++.+|||+|||+|..+..+++...+|+++|.++.
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~ 111 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKT 111 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHH
Confidence 34445555554434446789999999999999888887779999999984
No 59
>PLN02672 methionine S-methyltransferase
Probab=97.66 E-value=1.3e-05 Score=74.73 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=46.7
Q ss_pred ehhHHHHHHHHhhh-cccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchhh
Q 032395 53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 53 ~as~~la~~l~~~~-~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
|-+..|.+.+...+ ..|++++|||+|||+|.+++.+++.. ++|+++|+++ ++++.++.|+..|
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n 165 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLN 165 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence 34445666544332 23567899999999999999988764 4899999999 5777777777665
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.65 E-value=2.9e-05 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=29.3
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..+..+++. +++|+++|.++.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~ 66 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA 66 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH
Confidence 5689999999999999888765 459999999984
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.65 E-value=1.1e-05 Score=63.36 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.3
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.+++.+.+|+++|.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~ 77 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAE 77 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHH
Confidence 4579999999999999999999999999999984
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.65 E-value=1.6e-05 Score=65.64 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.3
Q ss_pred cccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..+|||+|||+|.+++.+++... +|+++|.++. .++.++.|...|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~--Al~~A~~nl~~n 243 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA--ALESSRATLAAN 243 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence 45799999999999999888753 8999999984 455444444433
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.64 E-value=4.1e-05 Score=62.69 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.|++-..... +..+...+++++|||+|||+|..++.++..|+ .|+++|.++.
T Consensus 104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~ 156 (322)
T PRK15068 104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQL 156 (322)
T ss_pred eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH
Confidence 5665443222 22333456899999999999999999998887 7999998874
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.63 E-value=2.9e-05 Score=59.61 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=29.6
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..+..+++. +.+++++|+++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~ 78 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEY 78 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH
Confidence 5679999999999999888775 459999999994
No 65
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.63 E-value=2e-05 Score=62.37 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=34.8
Q ss_pred cccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..+|||+|||+|.+++.+++. +.+|+++|+++ +.++.+++|+..|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~ 133 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADA 133 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence 358999999999999988764 34999999998 4566566665444
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.61 E-value=2.6e-05 Score=59.10 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=35.0
Q ss_pred cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
...++.+|||+|||+|.+++.+++. + .+|+++|.++. .++.+++|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~--~~~~a~~n~ 85 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK--AINLTRRNA 85 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHH
Confidence 4457889999999999999988764 3 48999999984 444444443
No 67
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.61 E-value=1.4e-05 Score=67.34 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=38.2
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.++++|||+|||||..++.++..|+ +|+++|.++. .++.+++|+..|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~--al~~a~~N~~~N 266 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELN 266 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence 3689999999999999998887777 9999999994 565556665555
No 68
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.61 E-value=6.5e-05 Score=61.52 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=32.8
Q ss_pred cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
..+++++|||+|||+|...+.++..|+ .|+++|.++.
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ 155 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVL 155 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH
Confidence 457899999999999999988888887 7999999884
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.61 E-value=2.6e-05 Score=66.19 Aligned_cols=57 Identities=23% Similarity=0.133 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchh
Q 032395 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
..+.+.+.... -++.+|||+|||+|.+++.+++. +++|+++|+++ +.++.+++|+..
T Consensus 239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~ 297 (423)
T PRK14966 239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAAD 297 (423)
T ss_pred HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence 34555554322 14579999999999999988764 35999999998 466666666543
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.60 E-value=2.6e-05 Score=62.78 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=34.9
Q ss_pred cccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
+++|||+|||+|..++.+++.. ++|+++|+++ +.++.++.|+..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~ 167 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIER 167 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence 4689999999999999998763 4999999998 456555555543
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.59 E-value=2.6e-05 Score=60.04 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=39.6
Q ss_pred ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
-.+..+..++......-++.+|||+|||+|..+..+++. + .+|++.|.++.
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~ 112 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE 112 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 355566666666555557899999999999999887765 3 49999999984
No 72
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.57 E-value=3.6e-05 Score=60.51 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..+.+.+.......++.+|||+|||+|..++.+++.. .+|+++|.++. .++.++.|..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~--~l~~a~~n~~ 153 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE--ALAVARRNAK 153 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHH
Confidence 4455555433333466799999999999999888765 49999999984 4555555443
No 73
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.56 E-value=3.1e-05 Score=65.31 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=37.0
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
++.+|||+|||+|..++.+++.+.+|++.|.++. .++.++.|+..|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~--av~~a~~n~~~~ 337 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE--SVEKAQQNAELN 337 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH--HHHHHHHHHHHh
Confidence 4579999999999999999988789999999984 555555554433
No 74
>PLN02244 tocopherol O-methyltransferase
Probab=97.56 E-value=3.4e-05 Score=63.43 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=30.3
Q ss_pred ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
++++|||+|||+|..++.+++. +++|+++|+++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~ 152 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV 152 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH
Confidence 5679999999999999988875 789999999985
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.51 E-value=3.3e-05 Score=61.87 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=34.5
Q ss_pred ccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
++|||+|||+|.+++.+++.. ++|+++|+++ +.++.++.|+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~ 160 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEK 160 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence 689999999999999888764 4999999998 456655555543
No 76
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.51 E-value=2.4e-05 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=31.5
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.++.+|||+|||+|..+..+++.+.+|+++|.++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~ 96 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQ 96 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHH
Confidence 36789999999999999999888889999999984
No 77
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.50 E-value=4.5e-05 Score=60.07 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
++.+......-++.+|||+|||+|.++..+++.+.+|++.|.++.
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~ 62 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPR 62 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHH
Confidence 344444333446789999999999999999998889999999995
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.50 E-value=2.5e-05 Score=59.65 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=29.1
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
.+.+|||+|||+|..++.+++.. .+|+++|.++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~ 75 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP 75 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH
Confidence 46799999999999999887653 48999999994
No 79
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.50 E-value=6e-05 Score=59.14 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=30.1
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..+..+++. +++|+++|.++.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~ 64 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE 64 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence 6789999999999999888876 569999999984
No 80
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.48 E-value=6.6e-05 Score=50.25 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=28.5
Q ss_pred EEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCc
Q 032395 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 75 LELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
||+|||+|.....+... ..+++++|.++. .++.+++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~ 40 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERL 40 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCH
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHh
Confidence 79999999999988776 559999999994 565554443
No 81
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.48 E-value=4.8e-05 Score=63.05 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=36.4
Q ss_pred cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+++||||+||+|.+++.+++...+|+++|.++ +.++.+++|+..|
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~ 242 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAAN 242 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHc
Confidence 45799999999999998888777999999999 4566666665554
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.46 E-value=9.3e-05 Score=59.43 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
.+++......-+|.+|||+|||.|-+++.+|+. |++|+++.+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~ 96 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEE 96 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HH
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHH
Confidence 334444444557899999999999999999987 999999999985
No 83
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.46 E-value=0.0001 Score=57.05 Aligned_cols=49 Identities=22% Similarity=0.038 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
....|.+|+..... -++.+||++|||.|.-++++|..|.+|+++|+++.
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 34456666554211 15679999999999999999999999999999994
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.45 E-value=5.7e-05 Score=63.31 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=31.1
Q ss_pred ccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
.-++++|||+|||+|..++.+++. +++|+++|+++.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~ 201 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE 201 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH
Confidence 346789999999999999988874 779999999984
No 85
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.45 E-value=5.6e-05 Score=61.79 Aligned_cols=55 Identities=18% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
.++..+......-++++|||.|||+|...+.++..+++|++.|.++. .++.++.|
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~--~~~~a~~n 223 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWK--MVAGARIN 223 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHH--HHHHHHHH
Confidence 45666655444446789999999999999888888999999999984 44433444
No 86
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.44 E-value=0.00017 Score=54.08 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
-+.+...+....-++++|||+|||+|.++..+++.. .+|+++|+++.
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 344444444444578999999999999988776643 27999999984
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.42 E-value=4e-05 Score=58.49 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=38.8
Q ss_pred ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+|.+++|+|||||-+++.++..+. +|++.|.++ +.++.+++|....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~f 81 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARF 81 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHh
Confidence 788999999999999998887664 999999998 5777777776543
No 88
>PRK05785 hypothetical protein; Provisional
Probab=97.41 E-value=9e-05 Score=57.66 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=30.1
Q ss_pred ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
++.+|||+|||||..+..+++. +.+|+++|.++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~ 85 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN 85 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH
Confidence 4679999999999999888877 579999999995
No 89
>PRK04266 fibrillarin; Provisional
Probab=97.41 E-value=6.8e-05 Score=58.61 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=30.6
Q ss_pred ccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
.-++.+|||+|||+|..++.+++.. .+|++.|.++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ 107 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR 107 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH
Confidence 3467899999999999999888763 38999999984
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.40 E-value=6.3e-05 Score=61.27 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=34.3
Q ss_pred ccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
++|||+|||+|.+++.+++.. ++|+++|+++ ..++.++.|+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~ 179 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIER 179 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHH
Confidence 689999999999999888763 4999999998 456655555543
No 91
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.39 E-value=5.9e-05 Score=61.17 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=36.9
Q ss_pred HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~ 69 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR 69 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH
Confidence 3444544444457789999999999999998888889999999984
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.39 E-value=7.2e-05 Score=57.04 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=31.3
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+++.+|||+|||+|..+..+++.+++++++|.++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~ 78 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEE 78 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH
Confidence 46889999999999999888888889999999874
No 93
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.35 E-value=3e-05 Score=50.44 Aligned_cols=29 Identities=34% Similarity=0.388 Sum_probs=24.9
Q ss_pred EEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 75 LELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
||+|||+|..+..+++. +.+|+++|.++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~ 30 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE 30 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH
Confidence 79999999999999998 669999999995
No 94
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.35 E-value=5.1e-05 Score=59.56 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.1
Q ss_pred ccccEEEecCCCCCchhhhhh----cCCceEEccCCccceeccccCCC
Q 032395 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~----~ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
++.+|||+|||+|..++.+++ .+++|+++|.++. .++.++.|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~--ml~~A~~~ 101 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA--MIERCRRH 101 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHH
Confidence 678999999999999887765 2459999999984 44444333
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.35 E-value=7.5e-05 Score=64.68 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=33.9
Q ss_pred cccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchh
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
+.+|||+|||+|.+++.+++. +++|+++|+++ ++++.++.|+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~ 184 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIK 184 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHH
Confidence 468999999999999987764 45999999998 355555555443
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.34 E-value=6.6e-05 Score=58.79 Aligned_cols=59 Identities=17% Similarity=0.054 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--C-CceEEccCCccceeccccCCCchhh
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--g-a~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.-..|+.......+.++|||+|||+|..++.++.. + .+|+++|.++ +.++.++.|++.+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~ 116 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKA 116 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence 33556555545567899999999999988866553 2 3999999998 4555555555443
No 97
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.33 E-value=0.00017 Score=58.88 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.|.+-.--.. +..+-..++||+|||+|||.|.-+.-++..|| .|+++|-+..
T Consensus 97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l 149 (315)
T PF08003_consen 97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL 149 (315)
T ss_pred cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence 5665443333 33344478999999999999999999999999 7999998873
No 98
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.32 E-value=0.00015 Score=56.39 Aligned_cols=47 Identities=26% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..|.+|+.... .-++.+||++|||.|.-++.+|..|.+|+++|+++.
T Consensus 24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~ 70 (218)
T PRK13255 24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL 70 (218)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH
Confidence 34555554321 125679999999999999999999999999999984
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.32 E-value=7.9e-05 Score=57.59 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=39.8
Q ss_pred eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCC
Q 032395 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
++.+..+.+.+..... -.+++|||+|||+|..++.+++. +++|+++|.++. .++.++.|
T Consensus 70 ~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~--~~~~a~~~ 130 (251)
T TIGR03534 70 RPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE--ALAVARKN 130 (251)
T ss_pred CCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence 3444555555544321 14568999999999999988876 349999999984 44444443
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.31 E-value=0.00028 Score=54.34 Aligned_cols=34 Identities=26% Similarity=0.116 Sum_probs=28.8
Q ss_pred cccccEEEecCCCCCchhhhhhcC---CceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~ 102 (141)
.++.+|||||||+|..+..+++.. .+|+++|+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 367899999999999998777753 3899999987
No 101
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.30 E-value=0.00013 Score=57.97 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=36.5
Q ss_pred ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
|.+..-+..+......-++.+|||+|||+|..+..+++ .+++|+++|+++.
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~ 86 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK 86 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH
Confidence 33333344444433344778999999999999887765 4669999999984
No 102
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=4.6e-05 Score=59.12 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=49.4
Q ss_pred cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
.+.-.|=++..+...|.+....-++.+|||+|||+|..+-++|+...+|+.+|..+. +.+.++.|
T Consensus 49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~--L~~~A~~~ 113 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEE--LAEQARRN 113 (209)
T ss_pred CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHH--HHHHHHHH
Confidence 344455677767777776656668899999999999999999999889999999983 34344443
No 103
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.29 E-value=0.00011 Score=60.97 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=35.7
Q ss_pred cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+.+||||+||+|.+++.+++..++|+++|.++. .++.++.|+..|
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~--ai~~a~~N~~~~ 251 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKP--SVAAAQYNIAAN 251 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHH--HHHHHHHHHHHh
Confidence 357999999999999988887679999999994 555555555444
No 104
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.28 E-value=6.8e-05 Score=58.24 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=31.8
Q ss_pred ccccEEEecCCCCCchhhhhhc----CCceEEccCCccceeccccCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~----ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
++.+|||+|||+|..++.+++. +++|+++|+++. .++.++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~--ml~~a~~ 97 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP--MVERCRQ 97 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHH
Confidence 6679999999999998877764 458999999984 4444433
No 105
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00043 Score=59.93 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred eehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
++++|...+...+.. .++.+|-.++..+...-.++.++|+=||||..|+.+|+.-.+|++.++++ +.+.-++.|+
T Consensus 351 ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA 425 (534)
T KOG2187|consen 351 LTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNA 425 (534)
T ss_pred eEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcc
Confidence 444554444333322 36677777777765554678999999999999999999888999999998 4555555555
Q ss_pred hhh
Q 032395 115 HIC 117 (141)
Q Consensus 115 ~~n 117 (141)
..|
T Consensus 426 ~~N 428 (534)
T KOG2187|consen 426 QIN 428 (534)
T ss_pred hhc
Confidence 554
No 106
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.25 E-value=8.6e-05 Score=58.81 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.9
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~ 104 (141)
+++||||||||+.|..+.-+-.+.++.|++.+|
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nM 159 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENM 159 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHH
Confidence 689999999999999888888899999999864
No 107
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.24 E-value=4.4e-05 Score=57.89 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=36.8
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
++|.++|||=||||.+|+-+...|| +|++.|.+. +++..++.|++.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~ 87 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEK 87 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHH
Confidence 7899999999999999999999998 999999998 467777777654
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.23 E-value=0.00019 Score=54.70 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=29.8
Q ss_pred ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.++..+ .+|+++|.++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 57899999999999999887765 59999999884
No 109
>PRK06202 hypothetical protein; Provisional
Probab=97.20 E-value=0.00013 Score=56.44 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.9
Q ss_pred ccccEEEecCCCCCchhhhhh----cC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~----~g--a~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..+..+++ .| .+|+++|.++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 457999999999998877664 23 38999999995
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.18 E-value=0.00041 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.8
Q ss_pred cccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~ 103 (141)
.+.++|||+|||+|..+..+++.+. +|+++|.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 69 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG 69 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH
Confidence 4567999999999999988888764 7899999984
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.18 E-value=0.00016 Score=59.45 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR 103 (141)
Q Consensus 56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~ 103 (141)
..+..++.+....-++.+|||+|||+|..++.+++... +|+++|.++.
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~ 116 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK 116 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH
Confidence 34444454443444678999999999999998887532 6999999984
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.18 E-value=0.00019 Score=61.03 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~ 300 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN 300 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH
Confidence 5679999999999998877764 679999999974
No 113
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.15 E-value=0.00013 Score=55.99 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=29.1
Q ss_pred ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
++++|||+|||+|..+..+++. + .+|+++|+++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 81 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN 81 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 5789999999999999888764 3 49999999984
No 114
>PRK08317 hypothetical protein; Provisional
Probab=97.13 E-value=0.0006 Score=51.62 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=30.2
Q ss_pred cccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
...++.+|||+|||+|..+..++... .+|+++|.++.
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~ 55 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA 55 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH
Confidence 34467899999999999988777642 48999999984
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=97.12 E-value=0.00016 Score=57.27 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-----CCceEEccCCccceeccccCCCc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-----ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
.+|+++... ...+.+|||+|||+|.+++.+++. .++|++.|+++. +++.++.|.
T Consensus 38 ~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~--Al~~Ar~n~ 96 (241)
T PHA03412 38 GLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT--YYKLGKRIV 96 (241)
T ss_pred HHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH--HHHHHHhhc
Confidence 355555422 224779999999999999988763 238999999994 455555553
No 116
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.11 E-value=7.2e-05 Score=50.46 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEEecCCCCCchhhhhhc---C--CceEEccCCccceeccccCC
Q 032395 74 VVELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 74 vLELG~GtGl~~l~~a~~---g--a~Vv~tD~~~~~~~l~n~~~ 112 (141)
|||+|||+|.....++.. + .+++++|+++. .++.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~--~l~~~~~ 42 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE--MLELAKK 42 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH--HHHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH--HHHHHHH
Confidence 799999999999988776 3 69999999994 4544433
No 117
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.11 E-value=0.00012 Score=55.53 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=29.0
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
...++||+|||+|..++.+++.. ++|+++|.++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~ 51 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTP 51 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHH
Confidence 45689999999999999888763 49999999984
No 118
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.09 E-value=0.00015 Score=57.35 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=28.5
Q ss_pred ccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~ 103 (141)
++++|||+|||+|..++.+++. +. +|+++|.++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~ 113 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPE 113 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHH
Confidence 6789999999999988876654 44 7999999984
No 119
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.03 E-value=0.00018 Score=58.21 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=29.2
Q ss_pred ccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~ 103 (141)
++.+|||||||+|..+..+++. +.+|++.|+++.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~ 99 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISAD 99 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH
Confidence 4679999999999998877765 469999999994
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=97.01 E-value=0.0002 Score=57.76 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=31.7
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
...+|||+|||+|.+++.+++. +.+|+++|+++. .++.+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~ 106 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKR 106 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHH
Confidence 3568999999999999887765 359999999994 4443333
No 121
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.01 E-value=0.00037 Score=55.14 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=37.9
Q ss_pred eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCccc
Q 032395 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRI 104 (141)
Q Consensus 49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~ 104 (141)
.+.|... +......-+|.+|||+|||||-.++.+++.. ++|++.|+++.|
T Consensus 36 ~~~Wr~~------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M 87 (238)
T COG2226 36 HRLWRRA------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87 (238)
T ss_pred hHHHHHH------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence 3577764 2222222278999999999999999988864 499999999964
No 122
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0004 Score=56.25 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=38.1
Q ss_pred hcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCccceeccccCCCchhh
Q 032395 66 RYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
...+++..++|+|||+|..++.++. ++. .|+++|.+++ ++..+.+|+..+
T Consensus 144 ~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~--Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 144 SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA--AIKLAKENAQRL 195 (328)
T ss_pred hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH--HHHHHHHHHHHH
Confidence 3456777899999999999997654 454 8999999994 666666666544
No 123
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.94 E-value=0.00071 Score=53.65 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.2
Q ss_pred ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.+++. + ++|+++|.++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ 109 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE 109 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 5789999999999998887764 4 48999999995
No 124
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.92 E-value=0.00037 Score=57.76 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=35.2
Q ss_pred cEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.+|||=||+|..|+.+|+...+|+++|..+ ++++.++.|+..|
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N 241 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLN 241 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHc
Confidence 799999999999999999999999999998 4666666666655
No 125
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.92 E-value=0.00076 Score=57.40 Aligned_cols=35 Identities=31% Similarity=0.296 Sum_probs=31.6
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.++++|||+|||+|..+..+++.+.+|++.|+++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~ 70 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIES 70 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH
Confidence 36779999999999999999988889999999984
No 126
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.00044 Score=52.98 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhhhcccc---cccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~---~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
-++.|.+-+......++ .+.++|+|||+|.++-++++. + +...+||+++.
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~ 79 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE 79 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH
Confidence 45666666766544443 468999999999999888874 3 37899999994
No 127
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.91 E-value=0.00021 Score=59.93 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=36.5
Q ss_pred cccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+.+|||++||+|..|+.+++. ++ +|++.|.++ +.++.+++|++.|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N 104 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELN 104 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence 358999999999999988764 54 899999999 4666666766665
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.87 E-value=0.0004 Score=53.65 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCch
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.+..-..++.......+-++|||+|+++|..++.+|.. +.+|+.+|.++ +..+.++.|+.
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~ 91 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFR 91 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHH
Confidence 44455556555444557799999999999999988864 45999999998 34455555544
No 129
>PRK06922 hypothetical protein; Provisional
Probab=96.84 E-value=0.00048 Score=61.46 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=29.7
Q ss_pred ccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
.+++.+|||+|||+|..+..+++. +.+|+++|+++.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 346789999999999988766653 359999999995
No 130
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.84 E-value=0.00089 Score=52.54 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=28.7
Q ss_pred eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccc
Q 032395 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRI 104 (141)
Q Consensus 49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~ 104 (141)
.+.|.. .+++.+ ..-++.+|||+|||||.+++.+++. + .+|+++|+++.|
T Consensus 32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 356776 223322 2347789999999999999987764 4 389999999953
No 131
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.84 E-value=0.00027 Score=54.47 Aligned_cols=46 Identities=20% Similarity=0.105 Sum_probs=35.1
Q ss_pred ccccEEEecCCCCCchhhhhh--cCCceEEccCCccceeccccCCCchhh
Q 032395 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~--~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+|..|+|+-||.|..++.+|+ .+++|++.|++| .+++.+++|+.+|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lN 148 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLN 148 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHT
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHc
Confidence 678999999999999999998 455899999998 4566666666666
No 132
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.82 E-value=0.00051 Score=57.58 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=37.4
Q ss_pred ccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhh
Q 032395 72 ANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.+|||+-||+|..||.+++. |+ +|++.|.++ ++++.++.|+.+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N 92 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYN 92 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence 58999999999999999886 65 899999999 4677777777666
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.82 E-value=0.00028 Score=54.68 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCC
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N 113 (141)
++..+...+.+....-+|.+|||+|||+|..+-+++++ |. +|+..|..+. +.+.++.|
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~--l~~~A~~~ 116 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE--LAERARRN 116 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH--HHHHHHHH
Confidence 55555555555555558899999999999999888876 44 6999999984 44444443
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.76 E-value=0.00061 Score=57.69 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=34.8
Q ss_pred cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.+|.+|||+|||+|..++.++... .+|++.|.++. .++.++.|..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~--~l~~~~~n~~ 289 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQ--RLERVRENLQ 289 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHH
Confidence 378899999999999999888764 48999999994 4444444443
No 135
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.70 E-value=0.0011 Score=49.95 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=29.1
Q ss_pred ccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~ 103 (141)
++++|||+|||+|..+..+++... +++++|.++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~ 75 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence 678999999999999887776543 8999999873
No 136
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.00091 Score=57.07 Aligned_cols=59 Identities=22% Similarity=0.097 Sum_probs=45.2
Q ss_pred HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhhh
Q 032395 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
|..+........++.++|||=||.|..|+.+|+...+|+++++.+ +.++.+++|++.|+
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~ 339 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANG 339 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcC
Confidence 444444433344567999999999999999999999999999999 56666666666663
No 137
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.66 E-value=0.0016 Score=50.07 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=49.2
Q ss_pred hhhhhhcccccceeee---ehhHHHHHHHHhhhccc---ccc-cEEEecCCCCCchhhhhhcCC--ceEEccCCccc-ee
Q 032395 37 IAIIENMKEEYGLFVW---PCSVILAEYVWQQRYRF---SGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRI-EL 106 (141)
Q Consensus 37 i~i~~~~~~~~g~~~W---~as~~la~~l~~~~~~~---~~~-~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~-~~ 106 (141)
..+......+....+| ++-..+.+|+..+...+ +.. +|||||||-|.+-.-+++.|. +.+++||++.. ++
T Consensus 27 ~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 27 LELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred HHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 3444333333344566 44556777887764422 333 999999999999888888876 69999999942 44
Q ss_pred cccc
Q 032395 107 LMTS 110 (141)
Q Consensus 107 l~n~ 110 (141)
.+|+
T Consensus 107 A~ni 110 (227)
T KOG1271|consen 107 AQNI 110 (227)
T ss_pred HHHH
Confidence 4444
No 138
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.60 E-value=0.00057 Score=52.21 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=27.1
Q ss_pred ccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
++|||+|||+|..+..+++.. .+|+++|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~ 34 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE 34 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence 579999999999988877653 58999999884
No 139
>PLN02476 O-methyltransferase
Probab=96.59 E-value=0.00087 Score=54.14 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCchh
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
..++.......+.++|||+|+++|..++.+|+. +.+|+.+|.++ +..+.++.|++.
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~ 165 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYEL 165 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence 344444344557899999999999999988863 33799999998 345555555543
No 140
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.56 E-value=0.0017 Score=48.94 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=28.0
Q ss_pred ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
.+++|||+|||+|..+..+++. +.+++++|.++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~ 47 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD 47 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH
Confidence 5679999999999988877654 458899999874
No 141
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.54 E-value=0.002 Score=50.91 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.3
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+..-|||+|||+|+.|-.+...|...++.|+++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps 83 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS 83 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHH
Confidence 5678999999999999999999989999999995
No 142
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0036 Score=49.59 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=47.2
Q ss_pred eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
+=.+++-|...+.+..-.++|+++||+|+.||=.+-++.+.|| +|++.|....
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~ 113 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG 113 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence 3468888888888887788999999999999999999999999 9999999873
No 143
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.50 E-value=0.0031 Score=45.42 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=29.3
Q ss_pred ccccEEEecCCCCCchhhhhh-----c-CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAK-----V-GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-----~-ga~Vv~tD~~~~ 103 (141)
....|+|+|||.|.++.+++. . +.+|++.|.++.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES 64 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence 556999999999999998887 3 459999999984
No 144
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.50 E-value=0.0018 Score=50.12 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=35.6
Q ss_pred cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
...+-|||+|+|++++++|+...+|++++.++. ..+.+.+|...+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk--~a~~a~eN~~v~ 77 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPK--RARLAEENLHVP 77 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcH--HHHHhhhcCCCC
Confidence 367899999999999999999669999999994 444455554443
No 145
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0018 Score=51.50 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=29.2
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+.++|+|||+|..++.+|..-.+|++||.++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~ 66 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEA 66 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHH
Confidence 38999999999999999988889999999995
No 146
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.48 E-value=0.0012 Score=53.19 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=28.3
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..++.+++.. .++++.|..+.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~ 184 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA 184 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHH
Confidence 45799999999999999888764 38999998653
No 147
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.47 E-value=0.0016 Score=55.47 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=41.2
Q ss_pred eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+.+++.+..++..+.. ..+|++|||+|||+|..++.++.. +.+|++.|.++. .++.++.|+
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~--~l~~~~~~~ 295 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ--KLEKIRSHA 295 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHH
Confidence 3566555444444332 346789999999999988877653 348999999994 454444444
No 148
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.46 E-value=0.0011 Score=55.92 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=29.0
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
.+..+||+|||+|...+.+|+.. ..++++|+.+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~ 157 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTP 157 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHH
Confidence 35689999999999999888864 48999999873
No 149
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.43 E-value=0.001 Score=55.19 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=28.3
Q ss_pred ccccEEEecCCCCCchhhhhhc-C-CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~ 103 (141)
.+.+|||+|||+|..++.+++. + .+|+++|.++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~ 148 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH
Confidence 4579999999999988877664 3 48999999884
No 150
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.41 E-value=0.00077 Score=47.81 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=32.7
Q ss_pred cEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.+||+|||.|..++.+++.+. +|++.|-++. ..+.++.|...|
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~--~~~~l~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD--AYEILEENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH--HHHHHHHHHHHc
Confidence 489999999999999888775 6999999984 444444444433
No 151
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0035 Score=50.19 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=39.8
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc-eecc
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-ELLM 108 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-~~l~ 108 (141)
.+.+......-++..|||+|+|.|.++..+++.+++|++.++++.+ +.|.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~ 69 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLK 69 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHH
Confidence 4445554455567899999999999999999999999999999953 4444
No 152
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.39 E-value=0.0014 Score=55.65 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=33.1
Q ss_pred ccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
++++|||+|||+|..++.+++. ..+|++.|+++. .++.++.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~ 295 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENA 295 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 5789999999999999988765 249999999984 444444443
No 153
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.39 E-value=0.0012 Score=52.52 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=27.0
Q ss_pred ccccEEEecCCCCCchhhhhhc-----CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-----ga~Vv~tD~~~~ 103 (141)
++.+|||+|||+|..+..+++. +.+|+++|+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~ 123 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV 123 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH
Confidence 3468999999999988776653 237999999984
No 154
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.37 E-value=0.0063 Score=48.24 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc-eecc
Q 032395 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-ELLM 108 (141)
Q Consensus 55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-~~l~ 108 (141)
...+++.+......-++..|||+|+|+|.++-.+++.+++|++.|.++.+ +.|+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~ 69 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLK 69 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHH
Confidence 34455555555444478999999999999999999999999999999953 3444
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.0012 Score=52.70 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=39.6
Q ss_pred cccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCccceeccccCCCchh
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
..|.++.+||+||-+|.+++.+|+ .|+ .|++.|+++. +++.++.|+..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~ 104 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRF 104 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccc
Confidence 467889999999999999998887 466 8999999995 66666666544
No 156
>PHA01634 hypothetical protein
Probab=96.32 E-value=0.0017 Score=47.28 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=33.4
Q ss_pred ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.+++|+|+++|++.|-.+|+.+..|| +|++.+.++.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k 62 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK 62 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH
Confidence 56899999999999999999999999 8999999884
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.30 E-value=0.0039 Score=48.91 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=42.2
Q ss_pred cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|++.=.....|.+|+...... ++.+||..|||.|.=.+.+|..|.+|++.|+++.
T Consensus 21 ~~f~~~~pnp~L~~~~~~l~~~-~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~ 76 (226)
T PRK13256 21 VGFCQESPNEFLVKHFSKLNIN-DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK 76 (226)
T ss_pred CCCccCCCCHHHHHHHHhcCCC-CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH
Confidence 4443333455666666543221 5689999999999999999999999999999994
No 158
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.29 E-value=0.0016 Score=51.90 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=29.4
Q ss_pred cccEEEecCCCCC----chhhhhhc-------CCceEEccCCccceeccccCCC
Q 032395 71 GANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 71 ~~~vLELG~GtGl----~~l~~a~~-------ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
+.+|+++|||||- +++.++.. +.+|++||+++. .|+.++.+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~--~L~~Ar~~ 151 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK--ALEKARAG 151 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH--HHHHHHcC
Confidence 4589999999996 45555443 248999999994 56555444
No 159
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.0013 Score=50.25 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=39.4
Q ss_pred ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.+.|.++|||=||+|.+|+-|...|| ++++.|.+. +....++.|++
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~ 87 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLK 87 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHH
Confidence 47999999999999999999999999 999999998 45555566644
No 160
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.18 E-value=0.0037 Score=39.89 Aligned_cols=31 Identities=39% Similarity=0.406 Sum_probs=26.2
Q ss_pred cEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395 73 NVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~ 103 (141)
+++|+|||+|..+..+++. ..+++++|.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~ 32 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPV 32 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH
Confidence 5899999999998888873 349999999984
No 161
>PRK00811 spermidine synthase; Provisional
Probab=96.16 E-value=0.0024 Score=51.32 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=32.0
Q ss_pred ccccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~ 112 (141)
+.++||++|||.|..+..+++. +. +|++.|+++. +++.+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~--vv~~a~~ 118 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER--VVEVCRK 118 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH--HHHHHHH
Confidence 4579999999999998877776 44 8999999994 4443333
No 162
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.10 E-value=0.0015 Score=51.90 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=33.3
Q ss_pred ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
++.+|||+|||+|-.++.++.. + ..|++.|.++. .++.++.|+.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--~l~~~~~n~~ 117 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKS--RTKVLIANIN 117 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHH
Confidence 6789999999999999877664 2 38999999984 4444444443
No 163
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.07 E-value=0.0027 Score=53.69 Aligned_cols=44 Identities=9% Similarity=-0.000 Sum_probs=33.9
Q ss_pred ccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCCch
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
+|.+|||+|||+|..++.++.. + ++|++.|.++. .++.++.|+.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~--~l~~~~~n~~ 283 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEH--RLKRVYENLK 283 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHH
Confidence 6789999999999999888764 3 59999999984 4444444443
No 164
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.98 E-value=0.0035 Score=53.22 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=34.0
Q ss_pred cccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395 69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
-+|.+|||+|||+|..++.++.. + .+|++.|.++. .++.++.|+.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--rl~~~~~n~~ 298 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSAS--RLKKLQENAQ 298 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHH--HHHHHHHHHH
Confidence 36789999999999999888765 2 38999999984 4444444443
No 165
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.93 E-value=0.0026 Score=51.90 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=31.0
Q ss_pred ccEEEecCCCCCc-hhhhhh-cCCceEEccCCccceeccccCCCchhhhhh
Q 032395 72 ANVVELGAGTSLP-GLVAAK-VGSNVTLTDDSNRIELLMTSLPPSHICSRV 120 (141)
Q Consensus 72 ~~vLELG~GtGl~-~l~~a~-~ga~Vv~tD~~~~~~~l~n~~~N~~~n~~~ 120 (141)
-++||+|+|.-.+ .|+.++ .+.++++||+++ +.++.++.|+..|..+
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L 152 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNL 152 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhcccc
Confidence 4799999996544 555554 577999999999 5788888888877433
No 166
>PRK04457 spermidine synthase; Provisional
Probab=95.91 E-value=0.0021 Score=51.15 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=28.5
Q ss_pred ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
+.++||++|||+|.++..+++. +.+|++.|+++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~ 101 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ 101 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH
Confidence 4579999999999999877664 348999999984
No 167
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=95.83 E-value=0.0012 Score=52.91 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=47.0
Q ss_pred cccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccC
Q 032395 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD 100 (141)
Q Consensus 45 ~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~ 100 (141)
..+|..+|+++..|.+++.+++..++++++.++|||+++..+.+++...-|...+-
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~ 120 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDS 120 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCc
Confidence 57899999999999999999998889999999999999999777776654444333
No 168
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.0032 Score=50.21 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=38.4
Q ss_pred hhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCchh
Q 032395 64 QQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
.......|.+|||-|.|+|.++.++|+. |. +|+..|+.+ +.++.+++|...
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~ 141 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSE 141 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHH
Confidence 3334568999999999999999999863 43 999999988 455555555443
No 169
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.79 E-value=0.0041 Score=52.88 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred cccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCch
Q 032395 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
-+|.+|||+|||+|-.++.++.. +.+|++.|.++. .++.++.|+.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~--rl~~~~~n~~ 283 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE--KIQLVEKHAK 283 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHH
Confidence 36789999999999998877764 349999999984 4554444443
No 170
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.71 E-value=0.011 Score=45.98 Aligned_cols=49 Identities=27% Similarity=0.197 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
....|.+|+... ..-.+.+||.-|||.|.=.+.+|..|.+|++.|+++.
T Consensus 22 ~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~ 70 (218)
T PF05724_consen 22 PNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT 70 (218)
T ss_dssp STHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH
T ss_pred CCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH
Confidence 356677777662 2225569999999999999999999999999999994
No 171
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.68 E-value=0.013 Score=48.87 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=32.3
Q ss_pred cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+|+++|||||++|-.+-.+.+.|++|+++|..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l 244 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM 244 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc
Confidence 47899999999999999999999999999998773
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.65 E-value=0.0038 Score=51.84 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=40.7
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..|.+|+|+=||.|-.+|.+|+.|+ +|++.|+|| ...+-+++|+.+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN 234 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLN 234 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhc
Confidence 3688999999999999999999998 599999999 4666666777776
No 173
>PTZ00146 fibrillarin; Provisional
Probab=95.57 E-value=0.013 Score=47.73 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=41.1
Q ss_pred ccceeeeehhH-HHHHHHHhhh---cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 46 EYGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 46 ~~g~~~W~as~-~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
...+++|+.-. -||.-+.... .+-++.+|||||||+|..+..++.. + .+|++.|+++.
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r 168 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHR 168 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHH
Confidence 44589998532 2444443322 2336789999999999999988876 3 28999999973
No 174
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.54 E-value=0.0047 Score=53.15 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.2
Q ss_pred cEEEecCCCCCchhhhhhcCC-ceEEccCCc
Q 032395 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~ 102 (141)
.||++|+|||++++.|++.|+ .|++.+.-.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk 99 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK 99 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence 589999999999999999999 899887655
No 175
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.53 E-value=0.017 Score=43.91 Aligned_cols=54 Identities=30% Similarity=0.263 Sum_probs=44.3
Q ss_pred eeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR 103 (141)
Q Consensus 50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~ 103 (141)
.+=|+|-.+|+-|...-..-+|+-|||||.|||...=...+.|. .+++.++++.
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d 84 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD 84 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH
Confidence 34588999999988865555889999999999999877776663 7899999984
No 176
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.49 E-value=0.012 Score=45.97 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=27.3
Q ss_pred cccEEEecCCCCCchhhhhhcCC--ceEEccCCc
Q 032395 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSN 102 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~ 102 (141)
+++++|+|+|.|++|+.+|-... +|+..|-..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~ 101 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG 101 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence 68999999999999998885543 799988776
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.31 E-value=0.0049 Score=52.07 Aligned_cols=49 Identities=24% Similarity=0.095 Sum_probs=44.3
Q ss_pred ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
..+|++||+|=|=||-.|+.||+.|| +|+..|++. ..|+.+++|..+|+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg 264 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNG 264 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcC
Confidence 34799999999999999999999999 999999999 58888888888884
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.18 E-value=0.034 Score=42.28 Aligned_cols=30 Identities=30% Similarity=0.620 Sum_probs=25.9
Q ss_pred cEEEecCCCCCchhhhhhcCC--ceEEccCCc
Q 032395 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~ 102 (141)
+++|+|+|.|++||.+|-+.. +|++.|-..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~ 82 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVG 82 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCc
Confidence 799999999999998887654 799999877
No 179
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.13 E-value=0.006 Score=48.48 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=35.0
Q ss_pred HHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCchh
Q 032395 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
|.....+.+|.+|||-|.|+|.+++++++. +. +|+..|+.+ +..+.++.|+..
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~ 87 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFER 87 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHH
Confidence 444445668999999999999999998874 32 999999998 345555554443
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=95.11 E-value=0.009 Score=46.75 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=37.7
Q ss_pred ccccccEEEecCCCCCchhhhhh-cC--CceEEccCCccceeccccCCCchh
Q 032395 68 RFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~-~g--a~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
....|+|||+|.+.|..++.+|. +. .+++.+|.++ +..+.+++|+..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~ 106 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAE 106 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHH
Confidence 33779999999999999998776 33 3899999999 567777777654
No 181
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.04 E-value=0.03 Score=45.52 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=32.9
Q ss_pred cccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
..-+...|||+|-|||.++..+...|++|++.++++.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr 91 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR 91 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH
Confidence 3335679999999999999999999999999999995
No 182
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.02 E-value=0.011 Score=45.63 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=26.1
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.++||+|||.|.++..+|....+++++|.++.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~ 76 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPR 76 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HH
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHH
Confidence 47999999999999988888779999999983
No 183
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.00 E-value=0.015 Score=44.61 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=27.0
Q ss_pred ccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
+|.+|||||||.|-+--.+.. .+.+..+.|+++.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~ 47 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD 47 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH
Confidence 678999999999977655544 5668999999984
No 184
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.92 E-value=0.015 Score=45.86 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred cccEEEecCCCCCchhhhhhc--CCceEEccCCccc
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRI 104 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~ 104 (141)
-.+|.|||||+|...-.+++. ++.++++|-++.|
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M 66 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM 66 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH
Confidence 458999999999998877765 4699999999954
No 185
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.85 E-value=0.031 Score=41.38 Aligned_cols=50 Identities=22% Similarity=0.107 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhhhcc-c-ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYR-F-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~-~-~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
|+.-|.+........ . ++.+||||||++|-.+-++.+.+ .+|++.|+.+.
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 445555555554311 1 34899999999999999998887 49999999984
No 186
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.80 E-value=0.0058 Score=49.58 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=40.8
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
.+|++||+|=|=||-.|+.+++.|| +|+..|.+. ..++..+.|..+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~N~~lNg 170 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKENAALNG 170 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHHHHHHTT
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcC
Confidence 4789999999999999999999999 899999998 57888888888774
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.70 E-value=0.011 Score=46.92 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+.++.......+-++|||+|+++|..++.+|.. +.+|+.+|.++. ..+..+.|+
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~--~~~~Ar~~~ 124 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRE--NYELGLPVI 124 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 344444334456789999999999999988763 349999999983 344444444
No 188
>PRK03612 spermidine synthase; Provisional
Probab=94.65 E-value=0.015 Score=50.69 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=33.1
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N 113 (141)
+.++||++|||+|.....+++.+ .+|++.|+++. +++.+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~--vi~~ar~~ 340 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA--MTELARTS 340 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH--HHHHHHhC
Confidence 46799999999999988777765 49999999994 45544443
No 189
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.51 E-value=0.016 Score=48.00 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=52.0
Q ss_pred eeeeeeeecCCCCCCceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhhhhh-cCC-ce
Q 032395 19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NV 95 (141)
Q Consensus 19 ~~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~~a~-~ga-~V 95 (141)
-+..+|+-+. ..+-.++.++.+.+-|..+=| +..+-+-.+....-.|.+||-+||| .|++.+.+|+ +|| +|
T Consensus 124 G~la~y~~~~----~dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~V 197 (354)
T KOG0024|consen 124 GTLAEYYVHP----ADFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDV 197 (354)
T ss_pred CceEEEEEec----hHheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcE
Confidence 3445555554 344566666655555554433 2233333343444578899999999 8999998888 588 99
Q ss_pred EEccCCcc
Q 032395 96 TLTDDSNR 103 (141)
Q Consensus 96 v~tD~~~~ 103 (141)
+++|..+.
T Consensus 198 Vi~d~~~~ 205 (354)
T KOG0024|consen 198 VITDLVAN 205 (354)
T ss_pred EEeecCHH
Confidence 99999984
No 190
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.18 E-value=0.014 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=27.8
Q ss_pred ccccEEEecCCCCCchhhhhhcC-C-ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g-a-~Vv~tD~~~~ 103 (141)
+.++||++|||+|..+..+++.. . +|+++|+++.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~ 107 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK 107 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH
Confidence 35699999999998877666654 3 8999999984
No 191
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.16 E-value=0.027 Score=46.54 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=35.3
Q ss_pred eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
-|=.+..+..|+.......++.+|||||||-|-=-.-..+.+. .++++|++..
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~ 96 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE 96 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH
Confidence 4778888888876543333778999999998754444444454 8999999984
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.14 E-value=0.0089 Score=44.74 Aligned_cols=42 Identities=14% Similarity=0.027 Sum_probs=32.0
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
+.|+|+-||.|--++..|+.+.+|+++|+++. .++-++.|+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~--~~~~a~hNa~ 42 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPE--RLECAKHNAE 42 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HH--HHHHHHHHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHHH
Confidence 36899999999999999999999999999994 5555555544
No 193
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.10 E-value=0.033 Score=44.87 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=36.9
Q ss_pred cccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--------CCceEEccCCcc
Q 032395 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNR 103 (141)
Q Consensus 45 ~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--------ga~Vv~tD~~~~ 103 (141)
....+++|.- .........++.++||++||||-++....+. ..+|++.|+++.
T Consensus 81 SlGiHRlWKd------~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 81 SLGIHRLWKD------MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred hcchhHHHHH------HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 3556677743 1222223457789999999999998866442 248999999995
No 194
>PLN03075 nicotianamine synthase; Provisional
Probab=93.87 E-value=0.027 Score=45.93 Aligned_cols=42 Identities=17% Similarity=0.046 Sum_probs=29.2
Q ss_pred ccccEEEecCC-CCCchhhhh-hcC--CceEEccCCccceeccccCCC
Q 032395 70 SGANVVELGAG-TSLPGLVAA-KVG--SNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a-~~g--a~Vv~tD~~~~~~~l~n~~~N 113 (141)
..++|+|+||| .|+.++.++ ... .+++++|.++. .++.++.+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~--ai~~Ar~~ 168 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS--ANDVARRL 168 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHH
Confidence 67899999999 556666555 333 38999999994 44444433
No 195
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.59 E-value=0.048 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=30.9
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~ 104 (141)
+.+++||||||.|-++..++.+-.+|.+|+.+..|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M 128 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM 128 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH
Confidence 45689999999999999999888899999999854
No 196
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.14 Score=39.78 Aligned_cols=50 Identities=28% Similarity=0.144 Sum_probs=39.4
Q ss_pred ehhHHHHHHHHhhhccc-ccccEEEecCCCCCchhhhhhcC-C--ceEEccCCcc
Q 032395 53 PCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNR 103 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~-~~~~vLELG~GtGl~~l~~a~~g-a--~Vv~tD~~~~ 103 (141)
.+++-|.+...++ ..| ++++|+||||-.|-.+-+++++. + +|++.|+.|.
T Consensus 28 RAa~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~ 81 (205)
T COG0293 28 RAAYKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM 81 (205)
T ss_pred hHHHHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence 4666777766666 444 56899999999999999888763 3 5999999994
No 197
>PLN02366 spermidine synthase
Probab=93.24 E-value=0.052 Score=44.40 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=28.6
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
+.++||++|||.|.....+++.. .+|++.|+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~ 126 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM 126 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH
Confidence 45899999999999888777764 38999999984
No 198
>PRK01581 speE spermidine synthase; Validated
Probab=92.89 E-value=0.036 Score=46.63 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=28.4
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
..++||++|||+|.....+.+.. .+|++.|+++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe 185 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS 185 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH
Confidence 45799999999998777777765 39999999995
No 199
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=92.60 E-value=0.12 Score=40.00 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred cccEEEecCCCCCchhhhhhcC--CceEEccCCccceecc
Q 032395 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLM 108 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~ 108 (141)
.++|+|+|+|+|..++.+++.- .++++.|+..+++..+
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~ 140 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAK 140 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccc
Confidence 4689999999999998777653 3899999987644433
No 200
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.059 Score=42.29 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=44.3
Q ss_pred ccceeeeehhHHHHHHHHhhh--cccccccEEEecCCCCCchhhhhh-cCC---ceEEccCCccceeccccCCCchh
Q 032395 46 EYGLFVWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAK-VGS---NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~-~ga---~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
..|+.+-=+++.+=.++.... ...+|.+.|++|+|+|.++-.+++ .++ .++++|.-+ ++++..++|+..
T Consensus 56 ~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 56 KIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDK 130 (237)
T ss_pred ccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHh
Confidence 344333335555544444432 244899999999999999877774 344 458999887 466666666543
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=92.25 E-value=0.075 Score=43.35 Aligned_cols=34 Identities=9% Similarity=-0.088 Sum_probs=29.4
Q ss_pred ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
++..+||.+||.|--+..+++.. .+|++.|.++.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~ 55 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD 55 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH
Confidence 56799999999999999888763 48999999994
No 202
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=91.95 E-value=0.11 Score=39.69 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.4
Q ss_pred ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~ 103 (141)
..+||+|||.|-..+..|+.-. .+++.|....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~ 52 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKK 52 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchH
Confidence 4899999999999888887644 8999999874
No 203
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=91.87 E-value=0.073 Score=42.51 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=30.2
Q ss_pred cEEEecCCCCCchhhhhhcC----CceEEccCCccceeccccCCCchhh
Q 032395 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~g----a~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+|||+|||.|-...-+.+-. -+|.+.|.++. +++..+.|...+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~--Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR--AIELVKKSSGYD 120 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH--HHHHHHhccccc
Confidence 69999999998877555432 37999999994 444444444333
No 204
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.81 E-value=0.19 Score=35.40 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=27.5
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~ 102 (141)
...+|||||-|++--.+.+-|.+=.+.|...
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 4789999999999999999998888888865
No 205
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=91.80 E-value=0.077 Score=41.72 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.9
Q ss_pred cEEEecCCCCCchhhhh-hcCCceEEccCCccc-eecc-ccCCCchhh
Q 032395 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRI-ELLM-TSLPPSHIC 117 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a-~~ga~Vv~tD~~~~~-~~l~-n~~~N~~~n 117 (141)
.|||+|||||---=+.- +.+..|++.|-++.| +.+. .+++|...+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~ 126 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ 126 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc
Confidence 58999999997655443 346699999999976 4444 666666555
No 206
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.73 E-value=0.11 Score=43.28 Aligned_cols=59 Identities=19% Similarity=0.045 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
...||..+.+....-+|..|||==||||-.-+.+...|++|+++|++.. .++-++.|.+
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~--mv~gak~Nl~ 240 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDER--MVRGAKINLE 240 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHH--HHhhhhhhhh
Confidence 3468888888777778999999999999999999999999999999984 5555666654
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=90.86 E-value=0.086 Score=45.73 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.4
Q ss_pred ccccEEEecCCCCCchhhhhhcC----------CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g----------a~Vv~tD~~~~ 103 (141)
...+|||.+||+|...+.++... .++++.|+++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~ 74 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT 74 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH
Confidence 34689999999999988665421 36899999884
No 208
>PLN02823 spermine synthase
Probab=90.66 E-value=0.14 Score=42.50 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=31.3
Q ss_pred ccccEEEecCCCCCchhhhhhcC-C-ceEEccCCccceeccccCCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g-a-~Vv~tD~~~~~~~l~n~~~N 113 (141)
+.++||.+|+|.|.....+.+.. . +|++.|+++. +++.++++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~--vv~lar~~ 146 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE--VVDFCRKH 146 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHh
Confidence 34799999999998887776653 3 8999999994 44444333
No 209
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=90.30 E-value=0.25 Score=38.33 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.2
Q ss_pred cEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395 73 NVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~ 103 (141)
+|||+|||||--+.+.|+. .. ...-+|.++.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~ 60 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN 60 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH
Confidence 6999999999999977764 33 6778888874
No 210
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=90.10 E-value=0.1 Score=41.95 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---------CCceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------GSNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---------ga~Vv~tD~~~~ 103 (141)
+...++++|.......++.+|+|-.||+|-.-+.+.+. ..++++.|+++.
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~ 88 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE 88 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH
Confidence 55667788877665557789999999999877666542 338999999985
No 211
>PRK10742 putative methyltransferase; Provisional
Probab=89.47 E-value=0.27 Score=39.30 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=30.0
Q ss_pred cEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|||+-+|+|..|+.++..|++|++.|.++.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~ 121 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV 121 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHH
Confidence 8999999999999999999999999999995
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=89.45 E-value=0.088 Score=40.66 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=32.3
Q ss_pred EEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchh
Q 032395 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 74 vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
|.|+||--|.+++.+.+.|. +++++|+++. -+++++.|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~g--pL~~A~~~i~~ 43 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPG--PLEKAKENIAK 43 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHH
Confidence 67999999999999999987 8999999994 45555555443
No 213
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.94 E-value=0.58 Score=33.70 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCC-chhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+|+|+.... ...+|+|+|-|-=. ++..+...|..|++||.++.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 5778887632 33499999999433 35566678899999999984
No 214
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=87.69 E-value=0.48 Score=38.00 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=37.0
Q ss_pred ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N 113 (141)
+|.+|||--.|.|..++.+++.|| +|+-.+.+++ +|+....|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lN 176 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLN 176 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccC
Confidence 688999999999999999999999 9999999994 66655555
No 215
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=87.61 E-value=0.2 Score=41.30 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=47.6
Q ss_pred eeeeehhHHHHHH---HHhhh--c-ccccccEEEecCCCCCchh-hhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395 49 LFVWPCSVILAEY---VWQQR--Y-RFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 49 ~~~W~as~~la~~---l~~~~--~-~~~~~~vLELG~GtGl~~l-~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
...|++...|-.+ ..+.+ . .-.+..|.||=+|-|...+ ++.++|| .|++.|.+|. .++.+++|++.|
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~--svEaLrR~~~~N 241 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPW--SVEALRRNAEAN 241 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHH--HHHHHHHHHHhc
Confidence 3689987766554 11111 1 1146789999999999999 9999999 8999999994 555555555555
No 216
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.47 E-value=0.42 Score=37.53 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=27.3
Q ss_pred ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~ 103 (141)
..+||+|||.|-.-+..|+... .+++++....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~ 83 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP 83 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH
Confidence 4899999999999888888765 7899998873
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=87.18 E-value=0.52 Score=39.37 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.8
Q ss_pred ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
++..+++||||-|-=.+-.-+.|. .++++|+.++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev 151 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV 151 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhc
Confidence 456789999999976666667776 8999999985
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=86.65 E-value=0.69 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=24.3
Q ss_pred ccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~ 103 (141)
++...+|||||.|-+-+.+|. .+. +++++++.+.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~ 77 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE 77 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH
Confidence 577999999999999886664 566 6999999984
No 219
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=86.07 E-value=0.18 Score=37.77 Aligned_cols=56 Identities=18% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCc-----------eEEccCCccceeccccCCCch
Q 032395 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN-----------VTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~-----------Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
+|.-|......-++..+||-=||+|-+-+.++..+.. +++.|+++. .++.++.|..
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~--~v~~a~~N~~ 82 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPK--AVRGARENLK 82 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHH--HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHH--HHHHHHHHHH
Confidence 4455555444446789999999999999888877653 669999984 5555555544
No 220
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.87 E-value=0.6 Score=37.37 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.++|.++||+|||.-+--++.|..-+ +++++|+.+.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence 34778999999999887766665544 8999999984
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.11 E-value=0.9 Score=36.37 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=27.4
Q ss_pred cccccccEEEecCCCCCchhhhhh-cC-C-ceEEccCCccc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAK-VG-S-NVTLTDDSNRI 104 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~-~g-a-~Vv~tD~~~~~ 104 (141)
..|+.++|||+|||+|....++.. .+ . ++++.|.++.+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~ 70 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEM 70 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHH
Confidence 357788999999999965444433 22 2 89999998853
No 222
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=84.05 E-value=0.25 Score=39.00 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=26.8
Q ss_pred ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+++||||+|-|-++..++..-.+|.+|+++.-
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyATElS~t 145 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYATELSWT 145 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHHHhhHH
Confidence 58999999999999887776667888888764
No 223
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=83.54 E-value=0.28 Score=41.23 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=35.0
Q ss_pred cccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhhh
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHICS 118 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n~ 118 (141)
.-+|||-=||||+=||-.++- +. +|++-|+++ ++.+.+++|+++|.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~ 98 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNG 98 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhcc
Confidence 348999999999999988876 33 899999999 46777777777663
No 224
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.36 E-value=0.63 Score=39.67 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=34.6
Q ss_pred ccceeeeehhHHHHHHHHh-hhcccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395 46 EYGLFVWPCSVILAEYVWQ-QRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~-~~~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
++|..+|++ +.+ ....+.|++|+=+||| .|+.....++ +|++|+++|.++.
T Consensus 183 g~g~s~~~~-------i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 183 GCRESLIDG-------IKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred hhchhhHHH-------HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 345555544 444 3345789999999999 5655544443 5889999998873
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=82.92 E-value=0.55 Score=42.45 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcc-cccccEEEecCCCCCchhhhhh
Q 032395 57 ILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAK 90 (141)
Q Consensus 57 ~la~~l~~~~~~-~~~~~vLELG~GtGl~~l~~a~ 90 (141)
.||.-|...... -.+..++|-.||+|-+.|.+|.
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHH
Confidence 466655554333 2467999999999999987765
No 226
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.83 E-value=0.56 Score=37.56 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=31.2
Q ss_pred cccEEEecCCCC--CchhhhhhcCCceEEccCCccceeccccCCCchhhhh
Q 032395 71 GANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSR 119 (141)
Q Consensus 71 ~~~vLELG~GtG--l~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n~~ 119 (141)
+-++||+|.|.- .+-|.....|.+.+++|+++. .+..++.|+..|..
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~--sl~sA~~ii~~N~~ 127 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ--SLSSAKAIISANPG 127 (292)
T ss_pred ceEEEeeccCcccccccccceeecceeecCccCHH--HHHHHHHHHHcCcc
Confidence 346788887733 233345567889999999994 56666666665533
No 227
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.03 E-value=1.5 Score=35.15 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.1
Q ss_pred ccccEEEecCCCCCchhhhhhcC-------CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g-------a~Vv~tD~~~~ 103 (141)
++..++|+|||.|.++-.++.+- ..++++|-...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 56689999999999999887642 37888888663
No 228
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=81.37 E-value=0.7 Score=39.82 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=48.6
Q ss_pred ccceeeeehhHHHHHHHHhhhccc-ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395 46 EYGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~~~~~~-~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
..|-.-|.+- ...+...-. ..| .|..|=|+=||.|-.++-+++.++.|++-|+++ +.++.++.|+.+|
T Consensus 226 DfskVYWnsR-L~~Eherls-g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~Lk~ni~lN 294 (495)
T KOG2078|consen 226 DFSKVYWNSR-LSHEHERLS-GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWLKANIKLN 294 (495)
T ss_pred ecceEEeecc-chhHHHHHh-hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHHHHhcccc
Confidence 4566679843 222221111 134 467888999999999999999999999999999 5666666776666
No 229
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=80.96 E-value=1.2 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNR 103 (141)
Q Consensus 74 vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~ 103 (141)
++|+|||+|... .++... ..+++.|.++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~ 83 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPE 83 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHH
Confidence 999999999876 333333 37888888874
No 230
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=80.04 E-value=1.2 Score=38.75 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=28.0
Q ss_pred ccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~ 103 (141)
.+..+||+|||.|-..+..|+... .+++.|....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~ 382 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN 382 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH
Confidence 356899999999988887777654 8999999873
No 231
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=79.97 E-value=0.7 Score=36.91 Aligned_cols=40 Identities=23% Similarity=0.044 Sum_probs=31.2
Q ss_pred cEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+++||-||+|-.++.+.+.|. .|++.|+++. +++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~--a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKS--AAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHH--HHHHHHHhC
Confidence 689999999999888888888 6788999984 444444443
No 232
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.85 E-value=2.2 Score=32.09 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=29.4
Q ss_pred ccEEEecCCCCCchhhhhhcCC-ceEEccCCccc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRI 104 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~ 104 (141)
.+.+|||+|-|.+=+.++++|. +-++.++++.+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwL 107 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWL 107 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHH
Confidence 3688999999999999999997 88999999854
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.17 E-value=2.4 Score=33.61 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR 103 (141)
Q Consensus 54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~ 103 (141)
.+..-+.|+...-..+..|++||+|.=||..++..|.. +.+|++.|++..
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~ 109 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDAD 109 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChH
Confidence 44555666666556678999999999999999877764 559999999984
No 234
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=78.19 E-value=0.84 Score=37.61 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=23.1
Q ss_pred ccccEEEecCCCCCchh-hhh---hc--CCceEEccCCc
Q 032395 70 SGANVVELGAGTSLPGL-VAA---KV--GSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l-~~a---~~--ga~Vv~tD~~~ 102 (141)
++..+||||||.|.=.- ++. +. ..+.+..|++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 45689999999887522 221 12 34799999998
No 235
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.81 E-value=3 Score=30.98 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=35.3
Q ss_pred ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+-...|.+.+.... .-+|..|||-=||+|-.++++.++|.+.+++|+++.
T Consensus 175 ~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 175 QKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp -S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred cCCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 34455666555432 126889999999999999999999999999999984
No 236
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.17 E-value=1.6 Score=38.26 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=29.5
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
..+.+|+=+||| .|+.++.+|+ +|++|+++|.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357799999999 8888887766 6899999999984
No 237
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.98 E-value=3.5 Score=29.51 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=23.6
Q ss_pred ccEEEecCCCCC-chhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl-~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.+|+|+|.|-=+ ++-.+++.|..|++||+++.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence 489999988321 23355677889999999983
No 238
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=73.76 E-value=1.5 Score=38.07 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=31.6
Q ss_pred ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+|.+|||++||.|-=+..+|.. + ..|++.|+++. -++.++.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl 158 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANI 158 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHH
Confidence 7789999999999888766653 3 28999999984 344444443
No 239
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=72.39 E-value=3 Score=34.34 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=28.3
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~ 103 (141)
.++.+|+=+||| .|++++.+++ .|+ +|+++|.++.
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 344589999999 8999887776 476 9999999884
No 240
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=72.15 E-value=2.3 Score=36.02 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.9
Q ss_pred cccEEEecCCCCCchhhhhh---------c---C-----CceEEccCCcc
Q 032395 71 GANVVELGAGTSLPGLVAAK---------V---G-----SNVTLTDDSNR 103 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~---------~---g-----a~Vv~tD~~~~ 103 (141)
.-+|+|+|||+|..++.+.. + + -+|...|+..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 34899999999999886531 1 1 26788888764
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=71.33 E-value=3.5 Score=32.31 Aligned_cols=34 Identities=15% Similarity=0.422 Sum_probs=19.6
Q ss_pred eeeehhHH--HHHHHHhhhcccccccEEEecCCCCCchh
Q 032395 50 FVWPCSVI--LAEYVWQQRYRFSGANVVELGAGTSLPGL 86 (141)
Q Consensus 50 ~~W~as~~--la~~l~~~~~~~~~~~vLELG~GtGl~~l 86 (141)
..||--.+ +.+|+.+.+ ++..|-|+|||-+.++-
T Consensus 53 ~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~ 88 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAK 88 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHH
T ss_pred hcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHH
Confidence 47887665 445554322 45689999999997773
No 242
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=71.00 E-value=3.4 Score=35.05 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=33.9
Q ss_pred ccceeeeehhHHHHHHHHh-hhcccccccEEEecCC-CCCch-hhhhhcCCceEEccCCcc
Q 032395 46 EYGLFVWPCSVILAEYVWQ-QRYRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~-~~~~~~~~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~~ 103 (141)
++|.-.|++ +.. ..-.+.||.++-.|.| +|-.. ..+...||+|++|+.+|.
T Consensus 190 GtgqS~~Dg-------I~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI 243 (420)
T COG0499 190 GTGQSLLDG-------ILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI 243 (420)
T ss_pred ccchhHHHH-------HHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCch
Confidence 455556666 444 3345689999888877 45432 233346899999999994
No 243
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=70.95 E-value=5.4 Score=35.00 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=31.9
Q ss_pred cccceeeeehhHHHHHHHHhhhcc-ccc---ccEEEecCCCCCchhhhhhcCCce
Q 032395 45 EEYGLFVWPCSVILAEYVWQQRYR-FSG---ANVVELGAGTSLPGLVAAKVGSNV 95 (141)
Q Consensus 45 ~~~g~~~W~as~~la~~l~~~~~~-~~~---~~vLELG~GtGl~~l~~a~~ga~V 95 (141)
++.|.+...++..-.++|.+-... ..+ +.+||+|||+|-.|-.+...+-.+
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t 142 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTT 142 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceE
Confidence 455555555665555555553222 333 378999999998887776666533
No 244
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=69.56 E-value=5.7 Score=32.55 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=28.9
Q ss_pred ccccccEEEecCCCCCchhhhhhcCC---ceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~ 102 (141)
.-.|.+|+|-|.|+|-++.+.++.-+ +++-.|+.+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~ 140 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE 140 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH
Confidence 44789999999999999998888632 788888865
No 245
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.43 E-value=3.9 Score=34.09 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=27.6
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
.-+|++|+=.|+| .|..++-+|+ +|++|++.|.++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~ 201 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE 201 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 4478999999998 4444555566 7899999999984
No 246
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=68.71 E-value=3.7 Score=32.00 Aligned_cols=34 Identities=21% Similarity=0.035 Sum_probs=28.7
Q ss_pred ccccEEEecCCCCCchhhhhhcC-C--ceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g-a--~Vv~tD~~~~ 103 (141)
++.+|||+||-.|-.+-++.+.. . .|.++|+-+.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 67899999999999999888753 3 7999998774
No 247
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=68.30 E-value=2.2 Score=34.30 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=26.4
Q ss_pred ccEEEecCCCCCc----hhhhhhcC-------CceEEccCCccceeccccCC
Q 032395 72 ANVVELGAGTSLP----GLVAAKVG-------SNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 72 ~~vLELG~GtGl~----~l~~a~~g-------a~Vv~tD~~~~~~~l~n~~~ 112 (141)
-+|+..||+||-= +|.+.... .+|++||++. .+|+.++.
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~ 147 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARA 147 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhc
Confidence 3799999999964 33333321 2899999998 35655544
No 248
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=67.66 E-value=1.7 Score=36.68 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=35.8
Q ss_pred cccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
.++|+|-=||||+=||-.+.- +. +|++-|+++ +..+.|+.|+.+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhc
Confidence 689999999999999977764 55 899999999 3555555666555
No 249
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.82 E-value=6.8 Score=29.19 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.8
Q ss_pred hcccccccEEEecCC--CCC-chhhhhhcCCceEEccCCc
Q 032395 66 RYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 66 ~~~~~~~~vLELG~G--tGl-~~l~~a~~ga~Vv~tD~~~ 102 (141)
...+++++|+=+|+| .|. +.-.+...|++|++++-..
T Consensus 39 ~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 39 GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 346799999999999 366 3445556777888887653
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=66.30 E-value=6.1 Score=31.90 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=30.9
Q ss_pred cccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~ 104 (141)
..+||-=|||.|.++.-+|++|..|.+.+.+-.|
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M 90 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM 90 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHH
Confidence 4689999999999999999999999999998754
No 251
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.91 E-value=3.2 Score=35.37 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=26.5
Q ss_pred ccccccEEEecCC-CCCchhhhh-hcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a-~~ga~Vv~tD~~~~ 103 (141)
.+.|++|+=+|+| .|......+ .+|++|+++|.++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 4689999999999 555444333 35789999988873
No 252
>PRK13699 putative methylase; Provisional
Probab=65.55 E-value=10 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=31.8
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|..|||-=||+|-.++++.++|.+++++|+++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~ 196 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH
Confidence 6789999999999999999999999999999984
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=65.04 E-value=4.8 Score=32.09 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=43.8
Q ss_pred eehhHHHHHHHHhhhcc-cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 52 W~as~~la~~l~~~~~~-~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
|-+....+.++...-.. +.-..|++-=||.|--.+.-|..++.|+++|+++. -+.-++.|++.
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPi--kIa~AkhNaei 138 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPV--KIACARHNAEV 138 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHH--HHHHHhcccee
Confidence 44444555555543222 24568899999999889988999999999999994 45455666543
No 254
>PLN02494 adenosylhomocysteinase
Probab=63.80 E-value=4.4 Score=35.30 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=32.5
Q ss_pred ccceeeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhh-hhhcCCceEEccCCcc
Q 032395 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNR 103 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~-~a~~ga~Vv~tD~~~~ 103 (141)
++|.-+|++ ++......+.|++|+=+|+| .|..... +..+|++|+++|.++.
T Consensus 235 GtgqS~~d~------i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 235 GCRHSLPDG------LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred cccccHHHH------HHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 344555655 23333345789999999999 4433222 2235789999998873
No 255
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=63.76 E-value=8.6 Score=32.59 Aligned_cols=51 Identities=22% Similarity=-0.045 Sum_probs=38.0
Q ss_pred ccccccEEEecCCCCCchhhhhhcCCceEEccCCcccee-ccccCCCchhhh
Q 032395 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEL-LMTSLPPSHICS 118 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~-l~n~~~N~~~n~ 118 (141)
.-.|+.|.|==.|||-+-+.+|..|+.|+++|++-.+.- -+-...|+..|.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNF 257 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANF 257 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhH
Confidence 347889999989999888889999999999999985321 213444555553
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=62.36 E-value=12 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=32.1
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|..|||-=||+|-.+++|.++|.+.++.|+++.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 7889999999999999999999999999999984
No 257
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=61.21 E-value=4.3 Score=34.81 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=25.5
Q ss_pred ccccccEEEecCC-CCCchh-hhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~~ 103 (141)
.+.|++|+=+|+| .|.... .+..+|++|+++|.++.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 4689999999998 333322 22346889999998873
No 258
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=61.17 E-value=9.7 Score=30.72 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.8
Q ss_pred cccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR 103 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~ 103 (141)
.+.++++|||.|.+.-.+...+- +++.+|.+-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~ 106 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYD 106 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchH
Confidence 46899999999999887777776 8999998873
No 259
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=60.07 E-value=4.3 Score=31.93 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=27.0
Q ss_pred ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~ 103 (141)
+.++||-+|-|.|...-.+.+.. .+|++.|+++.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~ 111 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE 111 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH
Confidence 46899999999998877777766 48999999994
No 260
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.07 E-value=8 Score=31.61 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHHHHhh-----hcccccccEEEecCCCCCchhhhhhcCCceEEccCCc
Q 032395 56 VILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 56 ~~la~~l~~~-----~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~ 102 (141)
..|..|+... ..+.+++.+-|+=+|||++|-..-+.|.+|++-|+..
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 3455666553 2455788999999999999999999999999999876
No 261
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=58.95 E-value=17 Score=28.58 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=34.6
Q ss_pred ehhHHHHHHHHhhhccccc----ccEEEecCCCCCchhhhhhcCC-ceEEccCCccc
Q 032395 53 PCSVILAEYVWQQRYRFSG----ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRI 104 (141)
Q Consensus 53 ~as~~la~~l~~~~~~~~~----~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~ 104 (141)
+++-++.+|+......-+. .++||+||=..-.. ..+.+. +|+.+|+++..
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~ 84 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQH 84 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCC
Confidence 5888999998876432222 48999998644322 334555 89999999853
No 262
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=58.83 E-value=8.3 Score=28.82 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=22.1
Q ss_pred hhcccccccEEEecCC-CCCch-hhhhhcCCceEEccCCcc
Q 032395 65 QRYRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 65 ~~~~~~~~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~~ 103 (141)
....+.||+++-+|.| +|-.- -.+..+|++|+++|.+|.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 3456799999998887 44321 123346889999999994
No 263
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=58.61 E-value=9.4 Score=30.43 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=32.1
Q ss_pred cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
.+|.+||++|=|-|+..-++-.... +-+.++..+ ++++.++.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~g 144 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWG 144 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcc
Confidence 3788999999999988766655544 556667776 5777777654
No 264
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=58.18 E-value=7.4 Score=33.07 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=27.8
Q ss_pred ccccccEEEecCC-CCCch--hhhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~--l~~a~~ga~Vv~tD~~~~ 103 (141)
.+++++|+=+|.| +|+.+ .++.+.|++|+++|..+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4577888888888 77763 356778999999998763
No 265
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=56.17 E-value=13 Score=28.98 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=22.5
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCCc-eEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga~-Vv~tD~~~ 102 (141)
.++++||=.|+| .|+..+.+|+ +|++ |+++|.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 478889888876 4444443444 4775 88888765
No 266
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.87 E-value=13 Score=29.91 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=23.6
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
..++++||=.||| .|+.++.+++ +|+ +|+++|.++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~ 204 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP 204 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 3468888888876 4444444444 477 688998776
No 267
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=55.77 E-value=6.7 Score=31.77 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=28.6
Q ss_pred ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~ 103 (141)
|+||-+|-|.|-..-.+.+... ++++.|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~ 111 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA 111 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH
Confidence 6999999999988888888874 9999999994
No 268
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=55.56 E-value=10 Score=29.14 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.|+.+|...-...+.++++|+=||+|.+++.+...+.+|++-|+++.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~ 53 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPD 53 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHH
Confidence 35666666433226789999999999999888777779999999984
No 269
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=54.72 E-value=3.4 Score=35.16 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=29.3
Q ss_pred cccccccEEEecCCCCCchhhhhhcCC---ceEEccCCccc-eeccccCCCc
Q 032395 67 YRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRI-ELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~~-~~l~n~~~N~ 114 (141)
..|+-++|||.|+|.|....++-..-. .+++.+.++.+ ++.+.+..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv 161 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV 161 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc
Confidence 467888999999998865443332211 56666666643 3444444443
No 270
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=54.60 E-value=7.5 Score=29.23 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=14.9
Q ss_pred CCCCchh----hhhhcCCceEEccCCcc
Q 032395 80 GTSLPGL----VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 80 GtGl~~l----~~a~~ga~Vv~tD~~~~ 103 (141)
|.|.+|+ .+|..|.+|++.|.++.
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5566665 44567889999999994
No 271
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.41 E-value=11 Score=30.99 Aligned_cols=46 Identities=28% Similarity=0.296 Sum_probs=34.9
Q ss_pred cccccccEEEecCCCCCchhh---hhhcCCceEEccCCcc--ceeccccCC
Q 032395 67 YRFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNR--IELLMTSLP 112 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~---~a~~ga~Vv~tD~~~~--~~~l~n~~~ 112 (141)
..++|+.||==|.|.|+.-.. .|++|++++..|+++. .+..+.++.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh
Confidence 456889999999999987554 4778999999999985 244444443
No 272
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=54.26 E-value=17 Score=31.27 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=28.7
Q ss_pred ccc-ccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395 69 FSG-ANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~-~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
|-| +.|+|+|+|-|.++-+++- .|-.|.++|-+..
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 444 5899999999999987764 5669999999974
No 273
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.54 E-value=8.1 Score=33.29 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=26.2
Q ss_pred ccccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
.+.+++|+=+|.| +|+..+ ++...|++|+++|..+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4478899999988 666555 3345788999999764
No 274
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=53.35 E-value=13 Score=31.34 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcccc---cccEEEecCCCCCchhhhhh----c------CCceEEccCCccc
Q 032395 57 ILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAK----V------GSNVTLTDDSNRI 104 (141)
Q Consensus 57 ~la~~l~~~~~~~~---~~~vLELG~GtGl~~l~~a~----~------ga~Vv~tD~~~~~ 104 (141)
.++.|+.+....+. .-.++|+|+|.|.+.--+.+ . ..++..++.++.+
T Consensus 61 lla~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 61 LLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 45555555443332 24799999999988763221 1 3489999999853
No 275
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=52.83 E-value=15 Score=29.58 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=23.5
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
-++.+||-+||| .|+..+.+|+ +|++|+++|.++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 357899999985 3444444444 477899998766
No 276
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=52.81 E-value=8.1 Score=31.23 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=23.6
Q ss_pred ccccEEEecCC-CCCchhhhhh--cCC-ceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK--VGS-NVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~--~ga-~Vv~tD~~~ 102 (141)
+|.+||=+||| .|+..+.+++ .|+ +|+++|.++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 57899999987 5555554444 354 899999876
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=52.78 E-value=5.7 Score=31.43 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~ 104 (141)
+|||.-+|-|-=++++|..|++|++.+-++.+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvi 109 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVI 109 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHH
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHH
Confidence 89999999999999999999999999999964
No 278
>PRK08223 hypothetical protein; Validated
Probab=52.40 E-value=20 Score=29.19 Aligned_cols=47 Identities=21% Similarity=0.120 Sum_probs=34.4
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..+++.+|+=+||| .|-. ...++..|- ++++.|.+.+ -+.|+.++..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V--e~SNLnRQ~l 72 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF--ELRNFNRQAG 72 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc--chhccccccC
Confidence 45688899999999 3433 446677887 9999999974 4557666554
No 279
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=51.61 E-value=12 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=22.7
Q ss_pred ccEEEecCCCCCchhhhhh----c-----C-CceEEccCCccc
Q 032395 72 ANVVELGAGTSLPGLVAAK----V-----G-SNVTLTDDSNRI 104 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~----~-----g-a~Vv~tD~~~~~ 104 (141)
-+|+|+|+|.|.++.-+.. . . .++++++.++.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 5899999999988764332 1 1 278999999854
No 280
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=51.13 E-value=14 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=27.5
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCc
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~ 102 (141)
...++.++|+-+||| .|. ++..+++.|. ++++.|.+.
T Consensus 16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 346688999999998 232 3345677787 899999986
No 281
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.23 E-value=14 Score=31.67 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=26.7
Q ss_pred cccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
+++++|+=+|-| +|.... ++.+.|++|+++|.++
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 568899999998 666654 4556789999999875
No 282
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=47.60 E-value=17 Score=25.42 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=28.5
Q ss_pred cccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 71 GANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 71 ~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
+++|+=+||| .|.. ...+++.|. +++..|.+.. ...|+.++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v--~~~nl~r~~~ 47 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV--EPSNLNRQFL 47 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB---GGGCCTCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce--eecccccccc
Confidence 5688889987 4432 335567788 8999999873 4457766543
No 283
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=47.54 E-value=6.7 Score=31.85 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=26.4
Q ss_pred ccEEEecCCCCCc----hhhhhhc------CCceEEccCCccceeccccCCC
Q 032395 72 ANVVELGAGTSLP----GLVAAKV------GSNVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 72 ~~vLELG~GtGl~----~l~~a~~------ga~Vv~tD~~~~~~~l~n~~~N 113 (141)
-+|+-.||+||-= +|.+... ..+|++||+++. .|+.++..
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~--aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTE--VLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHH--HHHHHHhC
Confidence 4899999999953 3333332 137999999993 55544443
No 284
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.50 E-value=13 Score=31.89 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=26.3
Q ss_pred cccccccEEEecCC-CCCchh--hhhhcCCceEEccCCc
Q 032395 67 YRFSGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l--~~a~~ga~Vv~tD~~~ 102 (141)
..+.+++|+=+|+| +|. ++ ++.+.|++|++.|.+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGR-GIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHH-HHHHHHHHCCCEEEEECCCh
Confidence 45678899999998 665 33 4456788999999654
No 285
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=47.18 E-value=13 Score=31.94 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=18.0
Q ss_pred CCCCchh----hhhhcCCceEEccCCcc
Q 032395 80 GTSLPGL----VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 80 GtGl~~l----~~a~~ga~Vv~tD~~~~ 103 (141)
|+|.+|+ .+|..|.+|++.|+++.
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5555555 55677999999999984
No 286
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=46.92 E-value=22 Score=28.26 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=22.1
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCCc-eEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga~-Vv~tD~~~ 102 (141)
..++.+||=+|+| .|+..+.+++ +|++ |++++-++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3467888888865 3333333333 5776 99998765
No 287
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=46.39 E-value=32 Score=26.70 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=30.7
Q ss_pred ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh----cC--CceEEccCCc
Q 032395 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSN 102 (141)
Q Consensus 48 g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~----~g--a~Vv~tD~~~ 102 (141)
|..++.....++.|-.-.. .++-+.|||+|.-.|-..++.|. .+ ++|++.|++.
T Consensus 11 G~pi~q~P~Dm~~~qeli~-~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIW-ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp TEEESS-HHHHHHHHHHHH-HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred CeehhcCHHHHHHHHHHHH-HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4455556666665532211 23678999999998877776654 22 4999999953
No 288
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=46.27 E-value=8.9 Score=32.52 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-----------------------------------------ceE
Q 032395 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-----------------------------------------NVT 96 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-----------------------------------------~Vv 96 (141)
||.-|........+..++|-=||+|-+.|-+|.++. .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 555555544445667999999999999998887764 267
Q ss_pred EccCCccceeccccCCCchhh
Q 032395 97 LTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 97 ~tD~~~~~~~l~n~~~N~~~n 117 (141)
+.|+++ ..++-++.|+...
T Consensus 259 G~Did~--r~i~~Ak~NA~~A 277 (381)
T COG0116 259 GSDIDP--RHIEGAKANARAA 277 (381)
T ss_pred EecCCH--HHHHHHHHHHHhc
Confidence 999998 4677777776544
No 289
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=46.02 E-value=24 Score=32.14 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=30.8
Q ss_pred ccccEEEecCCCCCchhhhhhc---CCceEEccCCccceecccc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTS 110 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~ 110 (141)
++..||||+|-.|-..-++++. |.-|+++|+-+. ..+.|+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-kp~~~c 86 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-KPIPNC 86 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-ccCCcc
Confidence 6789999999999888777764 448999999984 334433
No 290
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=45.84 E-value=15 Score=29.36 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=23.9
Q ss_pred cccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
..+|+|+|||.==+++..... ++.+++.|++..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~ 140 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQ 140 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHH
Confidence 358999999988777754443 458999999985
No 291
>PRK08328 hypothetical protein; Provisional
Probab=45.19 E-value=15 Score=28.56 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=31.4
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
..+++++|+=+||| .|.. ...+++.|. ++++.|.+.. -+.|+.++.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v--e~sNL~Rq~ 71 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP--ELSNLNRQI 71 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc--Chhhhcccc
Confidence 45678899999999 3432 335567787 8999998873 344655543
No 292
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=44.54 E-value=17 Score=28.42 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=32.5
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..+++.+|+=+||| .|.. ...+++.|. ++++.|.+.+ -..|+.++..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v--e~sNL~RQ~l 69 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV--SLSNLQRQVL 69 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc--cccCccccee
Confidence 35678899999999 3332 335567786 9999999874 4556655543
No 293
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=44.53 E-value=28 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.9
Q ss_pred hcccccccEEEecCCCCCchhhh----hhcCCceEEccCCcc
Q 032395 66 RYRFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNR 103 (141)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~~----a~~ga~Vv~tD~~~~ 103 (141)
...++|++|+=.|.| -+|..+ .+.|++|+++|.++.
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~ 62 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEE 62 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 356789999999998 344444 346889999998873
No 294
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=44.40 E-value=8.8 Score=30.27 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=34.2
Q ss_pred ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCch
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
++.++.|+||=.|.+.+++.+.+. .+++.|.++. -+++...|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~ 61 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVK 61 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHH
Confidence 466799999999999999988764 8999999985 3444444443
No 295
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=44.13 E-value=18 Score=27.73 Aligned_cols=46 Identities=22% Similarity=0.097 Sum_probs=31.6
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N 113 (141)
...++.++|+=+||| .|. +...+++.|. ++++.|.+.. -..|+.++
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v--e~sNL~Rq 71 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV--EPSNLNRQ 71 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe--cccccccc
Confidence 446688899999998 332 2335567787 8999999863 34455544
No 296
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=44.07 E-value=16 Score=29.46 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=32.6
Q ss_pred cccccccEEEecCC-CCCchh-hhhhcCC-ceEEccCCccceeccccCC
Q 032395 67 YRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l-~~a~~ga-~Vv~tD~~~~~~~l~n~~~ 112 (141)
+.++..+|+-+|+| .|-..+ ++++.|- +++.+|.++. .+.|+.+
T Consensus 26 ekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v--~vTN~NR 72 (263)
T COG1179 26 EKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV--CVTNTNR 72 (263)
T ss_pred HHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc--cccccch
Confidence 45688899999998 666555 5577787 9999999984 5555433
No 297
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.31 E-value=16 Score=31.06 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=25.3
Q ss_pred cccccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 67 YRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
..+++++|+=+|+| +|+... ++++.|.+|++.|..+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35678899999988 554322 3345688999999665
No 298
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=43.22 E-value=19 Score=27.66 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=32.4
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
...+++++|+=+||| .|. +...+++.|. ++++.|.+.. ...|+.++.
T Consensus 16 q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v--e~sNL~Rq~ 65 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV--ELSNLQRQI 65 (228)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE--cCccccccc
Confidence 345688999999999 332 2335567787 9999999873 445665554
No 299
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=42.78 E-value=19 Score=29.33 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=22.7
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
..++.+||=.|+| .|+..+.+|+ .|+ +|+++|.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~ 226 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE 226 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 3467788888875 3333333344 577 699998776
No 300
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=42.72 E-value=16 Score=30.72 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=27.1
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~ 103 (141)
.|..|.-.||| .|+.++..|+ .|+ ++++.|+++.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~ 221 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE 221 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH
Confidence 56778888888 7888876666 577 9999999984
No 301
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=42.55 E-value=25 Score=28.86 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=24.9
Q ss_pred ccccccEEEecCCC-CCchhhhhh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
..++.+||..|||. |...+.+++ .|+ +|+++|.++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~ 219 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP 219 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 34678999998874 656555555 466 599998776
No 302
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=42.38 E-value=11 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=5.6
Q ss_pred EEecCCCCCchhhhhhc----C-CceEEccCCc
Q 032395 75 VELGAGTSLPGLVAAKV----G-SNVTLTDDSN 102 (141)
Q Consensus 75 LELG~GtGl~~l~~a~~----g-a~Vv~tD~~~ 102 (141)
||+|+..|..++.+++. + .++++.|..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~ 33 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP 33 (106)
T ss_dssp --------------------------EEEESS-
T ss_pred CccccccccccccccccccccccCCEEEEECCC
Confidence 69999999988766542 2 2799999988
No 303
>PRK07411 hypothetical protein; Validated
Probab=42.16 E-value=17 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.076 Sum_probs=34.0
Q ss_pred cccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395 67 YRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
..++..+||=+||| .|- +...++..|- ++++.|.+.+ -+.|+.++...
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~v--e~sNL~RQ~l~ 84 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVV--DSSNLQRQVIH 84 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEe--cccccCcCccc
Confidence 45678899999999 332 2335567787 9999999873 45577776544
No 304
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=41.84 E-value=13 Score=28.11 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=31.0
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N 113 (141)
...+++++|+=+||| .|. +...+++.|. ++++.|.+.. -..|+.++
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v--e~sNL~Rq 64 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV--DLSNLQRQ 64 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE--cccchhhh
Confidence 346688999999999 232 2335566787 9999999863 33355443
No 305
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=41.79 E-value=36 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.8
Q ss_pred ccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR 103 (141)
Q Consensus 46 ~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~ 103 (141)
..+...+++++.-+.|+.++. .+.||+||=+| =-=+.||++|.. .++|++.|+++.
T Consensus 21 DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeR 78 (243)
T PF01861_consen 21 DQGYATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDER 78 (243)
T ss_dssp T---B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HH
T ss_pred ccccccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHH
Confidence 456677888888888888754 56899999999 445677776654 459999999994
No 306
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=41.50 E-value=16 Score=31.94 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=24.4
Q ss_pred ccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
.|++|+=+|+| .|+... .+++.|++|+++|..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57899999999 555544 3345688999999654
No 307
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=41.19 E-value=16 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=23.2
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
-.+.+||=.||| .|+..+.+|+ +|+ +|+++|.++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 357888888875 4444444444 577 799998765
No 308
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=41.15 E-value=25 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=21.8
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
+|.+||=.|+| .|+..+.+|+ .|++|++++.++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~ 199 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA 199 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57899999975 3333333333 577898888765
No 309
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.74 E-value=22 Score=29.55 Aligned_cols=49 Identities=24% Similarity=0.204 Sum_probs=34.0
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
...+++++|+=+||| .|. +...++..|- ++++.|.+.+ -+.|+.++...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~v--e~sNL~Rq~l~ 74 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTV--DLSNLHRQVIH 74 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE--cccccccCccc
Confidence 345688899999998 232 2335566776 9999999873 45577666544
No 310
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=40.55 E-value=24 Score=29.18 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=32.1
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
...+++++|+=+||| .|. ++..+++.|. ++++.|.+.+ -+.|+.++.
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v--e~sNL~RQ~ 68 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV--EWSNLQRQQ 68 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc--cccccCccc
Confidence 345688999999999 232 2335567787 8999999873 344665543
No 311
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=40.39 E-value=32 Score=22.67 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHhhhccccc-ccEEEecCCCCCch--hhhh--hcCCceEEccCC
Q 032395 60 EYVWQQRYRFSG-ANVVELGAGTSLPG--LVAA--KVGSNVTLTDDS 101 (141)
Q Consensus 60 ~~l~~~~~~~~~-~~vLELG~GtGl~~--l~~a--~~ga~Vv~tD~~ 101 (141)
+|+...... +| |+||-+||.+|..- -.++ ..|++.+++-++
T Consensus 28 ~yvk~~~~~-~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 28 EYVKSQGKI-NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHC----TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHhcCCC-CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 344443333 66 89999999988642 2222 345677776554
No 312
>PRK00536 speE spermidine synthase; Provisional
Probab=40.38 E-value=11 Score=30.19 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=32.2
Q ss_pred cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
-++||=+|.|-|...--+.|...+|++.|+++. +++.+++
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~--Vv~~~k~ 112 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK--ILDSFIS 112 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH--HHHHHHH
Confidence 479999999999888888888679999999993 4544333
No 313
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=40.31 E-value=7.4 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=22.7
Q ss_pred ccEEEecCCCCCc----hhhhhh-----cC--CceEEccCCccceecccc
Q 032395 72 ANVVELGAGTSLP----GLVAAK-----VG--SNVTLTDDSNRIELLMTS 110 (141)
Q Consensus 72 ~~vLELG~GtGl~----~l~~a~-----~g--a~Vv~tD~~~~~~~l~n~ 110 (141)
-+|+-.||+||-= +|++.. .+ .+|++||+++. +|+.+
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~--~L~~A 80 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPS--ALEKA 80 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HH--HHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHH--HHHHH
Confidence 4789999999953 333333 12 28999999984 44433
No 314
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.04 E-value=19 Score=30.59 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=25.4
Q ss_pred cccccEEEecCC-CCCchh--hhhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l--~~a~~ga~Vv~tD~~~ 102 (141)
+.+++|+=+|.| +|+ ++ ++.+.|++|+++|.++
T Consensus 12 ~~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 12 IKNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hcCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCC
Confidence 467899999988 555 44 5566789999999875
No 315
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=40.00 E-value=18 Score=28.76 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=22.2
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCc-eEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~-Vv~tD~~~ 102 (141)
++++||=+||| .|+.++.+|+ +|++ |+++|.++
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 57788888876 5555554454 5775 66777765
No 316
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=39.88 E-value=28 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.9
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCCceEEccC
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDD 100 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~ 100 (141)
.++++||=.|+| .|+..+.+++ .|++|++++-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 367889888876 4444444444 4779999875
No 317
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.64 E-value=18 Score=30.89 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.2
Q ss_pred ccccEEEecCC-CCCchhhhhhcCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~~ga~Vv~tD~~~ 102 (141)
++++|+=+|.| +|....-+...|++|+++|..+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 57899999998 6655553333588999999553
No 318
>PLN02740 Alcohol dehydrogenase-like
Probab=39.60 E-value=18 Score=29.63 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=23.2
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
.-+|++||=.||| .|+..+.+|+ +|+ +|+++|.++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~ 233 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP 233 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh
Confidence 3367889999875 3444443444 577 699998766
No 319
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=39.31 E-value=17 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=22.6
Q ss_pred cccEEEecCCCCCc-hhhhhhcCCceEEccCCc
Q 032395 71 GANVVELGAGTSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 71 ~~~vLELG~GtGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
...||-+|+|.|+. ++.++..|++|++.|..+
T Consensus 7 ~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 7 EVDVLVAGSGGGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred ccCEEEECchHHHHHHHHHHHCCCcEEEEecCC
Confidence 34688889885543 334556788999988765
No 320
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.20 E-value=34 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCC
Q 032395 58 LAEYVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDS 101 (141)
Q Consensus 58 la~~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~ 101 (141)
+.+.+......++|++|+-+|+| .|.+ +..+...|++|+..+..
T Consensus 146 ii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 146 IMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 33444444556899999999999 5655 33445678888887764
No 321
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=39.11 E-value=33 Score=28.19 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=35.9
Q ss_pred cCcccCCcceeeeeeeecCCCCCCceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCC-CCC
Q 032395 10 EDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSL 83 (141)
Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl 83 (141)
.+..-+||.....++..... ..+..++...- +....+ =..+..|.+........-+|+.|+|=-+| ||+
T Consensus 6 ~~~iG~TPlvrL~~~~~~~~---~~i~~KlE~~N-P~gSvK-DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI 75 (300)
T COG0031 6 LDLIGNTPLVRLNRLSPGTG---VEIYAKLESFN-PGGSVK-DRIALYMIEDAEKRGLLKPGGTIVEATSGNTGI 75 (300)
T ss_pred HHHhCCCCcEeecccCCCCC---ceEEEEhhhcC-CCCchh-HHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHH
Confidence 34444677766666544431 34444444321 111111 12344444444444556689999999988 554
No 322
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.05 E-value=21 Score=30.26 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=24.6
Q ss_pred cccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
+++++|+=+|+| +|+... ++...|++|++.|..+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 467889999988 555422 3455788999999764
No 323
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=38.67 E-value=16 Score=30.19 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=19.1
Q ss_pred EEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 74 VVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 74 vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
||=+|+| +|+. ++.++..|++|++.+..+.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 5667777 3554 3355667889999998874
No 324
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=38.48 E-value=18 Score=19.40 Aligned_cols=10 Identities=60% Similarity=1.026 Sum_probs=7.1
Q ss_pred cCCCCCchhh
Q 032395 78 GAGTSLPGLV 87 (141)
Q Consensus 78 G~GtGl~~l~ 87 (141)
|+|+|++-++
T Consensus 14 GSGSGlplLv 23 (29)
T PF08515_consen 14 GSGSGLPLLV 23 (29)
T ss_dssp TSSSSS-HHH
T ss_pred CCCCCchhhh
Confidence 8899988764
No 325
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.47 E-value=20 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=21.6
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
++++||=.|+| .|+..+.+|+ +|++|++++.++
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57778778876 4444444444 477888877654
No 326
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.46 E-value=22 Score=29.90 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=23.6
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~ 103 (141)
+|..+.-.|.| .|+.-+.-++ +|| +++++|+++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 56677777776 4554444444 577 9999999984
No 327
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=38.22 E-value=19 Score=31.73 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=26.6
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
.+.+|+=+||| .|+..+.+++ +|++|++.|.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45689999998 6777775554 6889999998873
No 328
>PRK06398 aldose dehydrogenase; Validated
Probab=37.96 E-value=31 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=25.5
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.+++|++|=.|+..|+..-++ ++.|++|++++.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~ 40 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE 40 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 367899999998777654433 44688999888765
No 329
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=37.46 E-value=21 Score=29.37 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=28.4
Q ss_pred ccccEEEecCCCCCchhhhhhc-C-CceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~ 103 (141)
++..++|--+|-|--+.++++. + .+|++.|.++.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~ 55 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQ 55 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHH
Confidence 6779999999999888877764 3 49999999994
No 330
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=37.22 E-value=25 Score=28.31 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=31.8
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
..+++.+|+=+||| .|.. +-.+++.|- ++++.|.+.. ...|+.++.
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V--~~sNlnRQ~ 74 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV--CVTNTNRQI 74 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe--ccccccccc
Confidence 45688899999999 3332 335677785 9999999873 444654443
No 331
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=36.64 E-value=67 Score=25.23 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=36.5
Q ss_pred ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh----cC--CceEEccCCc
Q 032395 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSN 102 (141)
Q Consensus 48 g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~----~g--a~Vv~tD~~~ 102 (141)
|..+|.....|..|-.-.. ..+-..|||.|+--|-..++.|. .| .+|++.|++-
T Consensus 48 G~p~~k~p~D~~~yQellw-~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi 107 (237)
T COG3510 48 GIPCIKSPSDMWNYQELLW-ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDI 107 (237)
T ss_pred cccccCCHHHHHHHHHHHH-hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEeccc
Confidence 4456666666666633221 12556899999998888776654 36 4899988875
No 332
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=36.61 E-value=46 Score=21.37 Aligned_cols=33 Identities=39% Similarity=0.574 Sum_probs=20.6
Q ss_pred ccccccEEEecCCCCCchh--hhhhc-CCceEEccC
Q 032395 68 RFSGANVVELGAGTSLPGL--VAAKV-GSNVTLTDD 100 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l--~~a~~-ga~Vv~tD~ 100 (141)
.+++++++-+|+|.---++ .+... +.+|.+.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4788999999997322222 12233 447888877
No 333
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=36.31 E-value=59 Score=25.11 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=34.7
Q ss_pred eeehhHHHHHHHHhhhc----------ccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 51 VWPCSVILAEYVWQQRY----------RFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la~~l~~~~~----------~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
.-||+..-.-.|.+... .++||+|+=+|-+ .|.+ +.++.+.+|.|+..|.+-
T Consensus 32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~ 96 (197)
T cd01079 32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDING 96 (197)
T ss_pred ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCc
Confidence 35666554444444322 5899999999988 6665 345556789999998543
No 334
>PRK06153 hypothetical protein; Provisional
Probab=36.28 E-value=27 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=32.2
Q ss_pred cccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395 67 YRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N 113 (141)
..+++++|+=+||| +|- +...+|+.|- ++++.|.+.. -..|+.+-
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V--e~SNLnRQ 219 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF--LQHNAFRS 219 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe--cccccccc
Confidence 35678899999999 554 3446788887 9999999873 33355443
No 335
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=35.57 E-value=24 Score=27.59 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=31.6
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
..+++.+|+=+||| .|-. .-.+++.|. ++++.|.+.. ...|+.++.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V--~~sNlnRq~ 55 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV--CVSNLNRQI 55 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE--Cchhhcchh
Confidence 34678899999998 4433 235567787 9999999873 444665443
No 336
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=35.22 E-value=40 Score=27.15 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=24.8
Q ss_pred ccccccEEEecCC-CCCchhh-hhhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~-~a~~ga~Vv~tD~~~ 102 (141)
.+.+++|+=+|+| .|...+. +..+|++|++.|.++
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4578999999998 4433332 234688999998886
No 337
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=35.18 E-value=30 Score=28.95 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=32.9
Q ss_pred hcccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 66 RYRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
...+++.+|+=+||| .|.. ...++..|. ++++.|.+.+ -+.|+.++..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v--e~sNL~RQ~l 86 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV--DVSNIHRQIL 86 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE--cccccccccc
Confidence 345688899999999 3333 234566776 9999999973 4456666543
No 338
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.86 E-value=45 Score=27.14 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=34.7
Q ss_pred eeehhHHHHHHHHh-hhcccccccEEEecCC--CCCchh-hhhhcCCceEEccCCc
Q 032395 51 VWPCSVILAEYVWQ-QRYRFSGANVVELGAG--TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la~~l~~-~~~~~~~~~vLELG~G--tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
..||+..-.-.+.. ..-.++|++|+=+|.| .|.+-. ++...+++|+.++-..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 46776664444444 4447899999999997 455533 4445688888887643
No 339
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.60 E-value=33 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=25.8
Q ss_pred cccccEEEecCCCCCchh---hhhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l---~~a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..- .+++.|++|++++.++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 578999999999988533 3355688999987765
No 340
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=34.47 E-value=20 Score=29.62 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=21.2
Q ss_pred ccEEEecCCCCCchhhhhhc------------C------CceEEccCCcc
Q 032395 72 ANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~------------g------a~Vv~tD~~~~ 103 (141)
-+|+|+||.+|--++.+... + -.|+..|+..+
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 48999999999999866421 1 16888888774
No 341
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=34.34 E-value=38 Score=26.94 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=30.1
Q ss_pred ccccccEEEecCCCCCc-hh--hhhhcCCceEEccCCcc
Q 032395 68 RFSGANVVELGAGTSLP-GL--VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~-~l--~~a~~ga~Vv~tD~~~~ 103 (141)
.|++|.+|-=|+..|+. ++ .+++.|++|+.++.++.
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~ 43 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE 43 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999999999987 33 55788999999999873
No 342
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=34.17 E-value=25 Score=27.52 Aligned_cols=40 Identities=18% Similarity=-0.010 Sum_probs=30.2
Q ss_pred cEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+++||=||.|-+++.+.+.|. -|.+.|+++. +.+..+.|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~--a~~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD--ACETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH--HHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHH--HHHhhhhcc
Confidence 689999999999998888997 6899999984 343333443
No 343
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=34.14 E-value=25 Score=31.95 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=31.1
Q ss_pred ccccccEEEecCCC-CC-chhhhhhcCC-ceEEccCCccceeccccCC
Q 032395 68 RFSGANVVELGAGT-SL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~ 112 (141)
.+++.+||=+|||+ |- ++..++..|- ++++.|.+.+ -+.|+.+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V--e~SNL~R 380 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV--SYSNPVR 380 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE--CCCcccc
Confidence 45778999999994 43 3556677887 9999999874 3445544
No 344
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=33.90 E-value=30 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=32.4
Q ss_pred cccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 67 YRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..+++.+||=+||| .|. +...++..|- ++++.|.+.. -..|+.++..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v--e~sNL~Rq~l 87 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV--DESNLQRQVI 87 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe--cCcccccccc
Confidence 45678899999999 232 2335566776 9999999873 4456666554
No 345
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.58 E-value=28 Score=29.99 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=22.8
Q ss_pred ccEEEecCCCC-Cc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTS-LP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..|+-+|+|.| |. ++.+|+.|.+|.+.+.++
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 56888899855 33 335678899999999766
No 346
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=33.44 E-value=26 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=22.3
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
-++++||=.||| .|+..+.+|+ .|+ +|+++|.++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 367888888875 3444444444 477 599988765
No 347
>PRK06057 short chain dehydrogenase; Provisional
Probab=33.00 E-value=39 Score=25.60 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=25.3
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++++||=.|+..|+..-++ ++.|++|++++.++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999999777654433 34588999988765
No 348
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=32.66 E-value=74 Score=23.65 Aligned_cols=34 Identities=41% Similarity=0.530 Sum_probs=23.1
Q ss_pred cccccEEEecCCC-CCchhhhhh-cCCceEEccCCc
Q 032395 69 FSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~Gt-Gl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
-++.+||-.|+|. |...+.+++ .|++|++++.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 4678999999986 323332333 467999998875
No 349
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.39 E-value=28 Score=29.20 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=24.7
Q ss_pred ccccEEEecCC-CCCchh-hhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~~ 103 (141)
.+++|+=+|.| +|..++ ++++.|++|+++|..+.
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 46778888877 666655 33456889999998653
No 350
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=32.38 E-value=22 Score=27.77 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=20.1
Q ss_pred cEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
.|+=+|+| .|+. ++.+++.|.+|++.|..+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 46677888 4433 3455677889999999874
No 351
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.20 E-value=15 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.4
Q ss_pred EEEecCCCCCchhhhhhcCCc-eEEccCCcc
Q 032395 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNR 103 (141)
Q Consensus 74 vLELG~GtGl~~l~~a~~ga~-Vv~tD~~~~ 103 (141)
|+||=||.|-+++.+.+.|.+ +.+.|.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~ 31 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKY 31 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHH
Confidence 689999999999888888885 567999884
No 352
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=32.03 E-value=28 Score=28.76 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=21.4
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
.+++||=.|+| .|+..+.+|+ +|++|++++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 57788888875 4444444444 578888887653
No 353
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.02 E-value=41 Score=25.93 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-.+ ++.|++|++++.++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999999888764433 44688999998765
No 354
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=31.96 E-value=19 Score=24.98 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=9.1
Q ss_pred EEecCCCCCch
Q 032395 75 VELGAGTSLPG 85 (141)
Q Consensus 75 LELG~GtGl~~ 85 (141)
||+|||.|-.-
T Consensus 7 IDIGcG~GNTm 17 (124)
T PF07101_consen 7 IDIGCGAGNTM 17 (124)
T ss_pred cccccCCCcch
Confidence 69999999754
No 355
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=31.06 E-value=36 Score=26.67 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=31.3
Q ss_pred cccccccEEEecCC-CCCc-hhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395 67 YRFSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
..+++++|+=+||| .|.. ...++..|. ++++.|.+.. -..|+.++..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v--e~sNL~Rq~l 77 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV--SLSNLQRQVL 77 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE--Ccchhhhhhc
Confidence 45688899999997 3322 224556676 9999999873 3446655443
No 356
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=30.47 E-value=58 Score=25.60 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=22.4
Q ss_pred cccEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 71 GANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 71 ~~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
...|+=+|+| .|+. ++.+++.|.+|++.|..+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3567778888 4443 3345567889999987753
No 357
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=30.39 E-value=38 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.0
Q ss_pred cccccEEEecCC-CCCchh-hhhhcCC-ceEEccCCccceeccccCC
Q 032395 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l-~~a~~ga-~Vv~tD~~~~~~~l~n~~~ 112 (141)
+++..||-+||| -|.+++ +++.+|. ++=..|++.+ -+.|+.+
T Consensus 64 Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvV--e~sNlhR 108 (427)
T KOG2017|consen 64 LKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVV--ELSNLHR 108 (427)
T ss_pred cCCccEEEEccCCCCCHHHHHHHHcCCCeeccccccee--ehhhHHH
Confidence 456689999998 787766 5667777 7888888873 3445543
No 358
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=30.23 E-value=34 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.053 Sum_probs=24.1
Q ss_pred cccccEEEecCC--CCCchhhhhh-cCCceEEccCCc
Q 032395 69 FSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G--tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
-+|.+||=.|++ .|...+.+|+ +|++|++++.++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 367899999983 5555554555 578999887665
No 359
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=30.14 E-value=47 Score=25.59 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=29.9
Q ss_pred ccccEEEecCCCCCc-hhhhhhcCC-ceEEccCCccceeccccCCCchhhhhh
Q 032395 70 SGANVVELGAGTSLP-GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICSRV 120 (141)
Q Consensus 70 ~~~~vLELG~GtGl~-~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~~~ 120 (141)
.+...+|+|+..|-. |+++..... ++++++--. +.-..++.|+.+|..+
T Consensus 79 hdttyidiganvgtfcgiaarhitqgkiiaieplt--emensirmnvqlnnpl 129 (286)
T PF05575_consen 79 HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLT--EMENSIRMNVQLNNPL 129 (286)
T ss_pred CCceEEEeccccccchhhhhhhcccCceEEEechh--hhhhheeeeeeeCCcc
Confidence 356789999998865 444433332 777765433 3333567777777433
No 360
>PRK06523 short chain dehydrogenase; Provisional
Probab=29.74 E-value=57 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=25.8
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-.+ ++.|++|++++.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 468899999998777665433 34578999888764
No 361
>PRK06172 short chain dehydrogenase; Provisional
Probab=29.61 E-value=48 Score=24.95 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=25.6
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57899999998777665543 34578999998775
No 362
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=29.46 E-value=40 Score=27.82 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred cccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395 67 YRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPP 113 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N 113 (141)
..++.++|+=+||| .|- +...++..|. ++++.|.+.+ -+.|+.++
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V--e~sNL~RQ 67 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV--EWSNLQRQ 67 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc--CHHHcCcc
Confidence 45678899999998 332 2335566787 9999999863 34465554
No 363
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=29.26 E-value=13 Score=25.19 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCCchhhhhh-cCCceEEccCCcc
Q 032395 81 TSLPGLVAAK-VGSNVTLTDDSNR 103 (141)
Q Consensus 81 tGl~~l~~a~-~ga~Vv~tD~~~~ 103 (141)
.|+..+.+|+ .|++|+++|.++.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~ 25 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEE 25 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHH
Confidence 4666665555 5789999999883
No 364
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.25 E-value=72 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=30.0
Q ss_pred cccccccEEEecCCCCCchh----hhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 67 YRFSGANVVELGAGTSLPGL----VAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l----~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
..+++++|+=+|||. +|. .++..|- ++++.|.+.. ...|+.++.
T Consensus 17 ~~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~v--e~snL~rqf 65 (197)
T cd01492 17 KRLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTV--TEEDLGAQF 65 (197)
T ss_pred HHHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcc--cHhhCCCCc
Confidence 456788999999885 333 3355676 8999999873 344655543
No 365
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.25 E-value=71 Score=25.99 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeehhHHHHHHH-HhhhcccccccEEEecCC--CCCch-hhhhhcCCceEEccCC
Q 032395 51 VWPCSVILAEYV-WQQRYRFSGANVVELGAG--TSLPG-LVAAKVGSNVTLTDDS 101 (141)
Q Consensus 51 ~W~as~~la~~l-~~~~~~~~~~~vLELG~G--tGl~~-l~~a~~ga~Vv~tD~~ 101 (141)
..||+..-.-.+ .+..-.++||+|+=+|.| .|.+- .++.+.||.|+..+-.
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 357666544444 444456899999999988 55553 3444578888887543
No 366
>PRK05867 short chain dehydrogenase; Provisional
Probab=29.25 E-value=45 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-.+ ++.|++|++++.++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 57899999999877654433 44688999988765
No 367
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=28.96 E-value=30 Score=27.74 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=38.8
Q ss_pred cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR 103 (141)
Q Consensus 47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~ 103 (141)
....+++.+-.++.++.. .-.+..|||+.|+.|-=+..++.. + ..|++.|++..
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~ 121 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPK 121 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHH
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCHH
Confidence 444677777666665543 236788999999999877666553 3 38999999984
No 368
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=28.91 E-value=23 Score=27.81 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=23.9
Q ss_pred ccccEEEecCCCCCchh-hhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l-~~a~~ga~Vv~tD~~~~ 103 (141)
.-.+.||.|||-|.++= ++.+...+|-+.|..+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~ 89 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEK 89 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HH
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHH
Confidence 34689999999999986 45566569999999884
No 369
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.83 E-value=47 Score=28.82 Aligned_cols=37 Identities=35% Similarity=0.580 Sum_probs=27.3
Q ss_pred ccccccEEEecCC-CCCchh-hhhhcCCceEEccCCccc
Q 032395 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~~~ 104 (141)
.+.+++|+=+|=| +|+... ++.+.|++|++.|..+..
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3458899999887 665433 445679999999988853
No 370
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=28.80 E-value=36 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=14.8
Q ss_pred HhhhcccccccEEEecCCC
Q 032395 63 WQQRYRFSGANVVELGAGT 81 (141)
Q Consensus 63 ~~~~~~~~~~~vLELG~Gt 81 (141)
++.+..|+||+||-+|+|.
T Consensus 175 yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 175 YRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp --TGGGGTTSEEEEESSSH
T ss_pred CcChhhcCCCEEEEEeCCH
Confidence 3456789999999999993
No 371
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=28.77 E-value=31 Score=28.67 Aligned_cols=44 Identities=20% Similarity=0.087 Sum_probs=31.3
Q ss_pred ccccEEEecCCCCCchhhhhhcC----CceEEccCCccceeccccCCCch
Q 032395 70 SGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIELLMTSLPPSH 115 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~g----a~Vv~tD~~~~~~~l~n~~~N~~ 115 (141)
.|.+|||+-++.|-=+..+|.+. ..|++.|.++. -++.++.|+.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~ 203 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLK 203 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHH
Confidence 67899999999887766655543 35799999994 4444444443
No 372
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=28.64 E-value=33 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=22.9
Q ss_pred ccEEEecCCCCCc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..|+=+|+|.|+. ++.++..|++|++.+..+
T Consensus 17 ~DvvvvG~G~G~~aA~~a~~~G~~v~v~Ek~~ 48 (564)
T PRK12845 17 VDLLVVGSGTGMAAALAAHELGLSVLIVEKSS 48 (564)
T ss_pred eCEEEECCcHHHHHHHHHHHCCCcEEEEecCC
Confidence 4678889996654 345566788999998775
No 373
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=28.53 E-value=93 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCc
Q 032395 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSN 102 (141)
Q Consensus 62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~ 102 (141)
+.++...+.+..|+|+|-|.|-..-.....|+ +..+.+.++
T Consensus 42 IvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~ 83 (326)
T KOG0821|consen 42 IVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDT 83 (326)
T ss_pred HHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeecc
Confidence 34444455677899999999966655555665 666666655
No 374
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.22 E-value=77 Score=25.81 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=33.9
Q ss_pred eeehhHHHHH-HHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 51 VWPCSVILAE-YVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la~-~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||+..-.- .+....-.++||+|+=+|.| .|.+ +.++...+|.|+...-..
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T 193 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT 193 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC
Confidence 3566655444 44444456899999999988 5655 334455788888876543
No 375
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.18 E-value=6.8 Score=34.39 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=35.6
Q ss_pred cccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhh
Q 032395 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHIC 117 (141)
Q Consensus 71 ~~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n 117 (141)
+-+|||-=|+||+=+|-.|+. |. +|++-|.++. .++.+++|+++|
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~--aV~~i~~Nv~~N 157 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNEN--AVTSIQRNVELN 157 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHH--HHHHHHhhhhhc
Confidence 347999999999999987774 33 8999999984 666667777777
No 376
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=28.04 E-value=36 Score=27.66 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=21.4
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
++.+||=+|+| .|+..+.+|+ +|+ +|+++|.++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 57888888864 3333333333 578 799988765
No 377
>PRK09242 tropinone reductase; Provisional
Probab=28.00 E-value=48 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.8
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.+++|++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA 43 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457899999999877665544 34578999887665
No 378
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.73 E-value=55 Score=24.52 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=24.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-.+ ++.|++|++++-++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 57899999999877644333 34588999888654
No 379
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.67 E-value=54 Score=25.97 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=26.5
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-++ ++.|++|++.|...
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~ 46 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS 46 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence 468899999999988765433 45688999988753
No 380
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=27.60 E-value=32 Score=18.56 Aligned_cols=9 Identities=56% Similarity=1.014 Sum_probs=6.7
Q ss_pred cCCCCCchh
Q 032395 78 GAGTSLPGL 86 (141)
Q Consensus 78 G~GtGl~~l 86 (141)
|+|+|++.+
T Consensus 13 GSGSG~p~L 21 (30)
T smart00467 13 GSGSGLPLL 21 (30)
T ss_pred CCCCCchhH
Confidence 788887655
No 381
>PRK07035 short chain dehydrogenase; Provisional
Probab=27.59 E-value=51 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=26.2
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889999999988765543 44588999999865
No 382
>PRK07877 hypothetical protein; Provisional
Probab=27.50 E-value=42 Score=30.88 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=30.4
Q ss_pred ccccccEEEecCCCCCc-hhhhhhcC-C-ceEEccCCccceeccccCC
Q 032395 68 RFSGANVVELGAGTSLP-GLVAAKVG-S-NVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~-~l~~a~~g-a-~Vv~tD~~~~~~~l~n~~~ 112 (141)
.+++++|+=+|||.|-. ...++..| . ++++.|.+.+ -+.|+.+
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~v--e~sNLnR 149 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTL--ELSNLNR 149 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEE--ccccccc
Confidence 45778999999985543 33556777 3 9999999974 3445544
No 383
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.42 E-value=55 Score=25.48 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=-|++.|+..-++ ++.|++|+++|.++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999999887764433 44588999888765
No 384
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.34 E-value=86 Score=25.58 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.2
Q ss_pred eeehhHHHHH-HHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 51 VWPCSVILAE-YVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la~-~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||+..-.- .+....-.++|++|+=+|.| .|.+ +.++.+.+|.|+..+-..
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T 198 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT 198 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC
Confidence 3566655444 44444456899999999988 5655 334455688888877543
No 385
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.33 E-value=41 Score=24.89 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=25.1
Q ss_pred cEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 73 NVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 73 ~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
+|+-+||| .|- +...+++.|. ++++.|.+.. ...|+.++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v--~~sNl~Rq~ 43 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV--EPSNLNRQQ 43 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE--cCcchhccc
Confidence 46778887 232 2335567787 7999999873 334554443
No 386
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=27.14 E-value=61 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-.+ ++.|++|+++|.++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999998877765433 45688999888775
No 387
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=26.87 E-value=74 Score=24.58 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhh---cccccccEEEecCCCCCchhh--hhhcCC---ceEEccCCc
Q 032395 54 CSVILAEYVWQQR---YRFSGANVVELGAGTSLPGLV--AAKVGS---NVTLTDDSN 102 (141)
Q Consensus 54 as~~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~--~a~~ga---~Vv~tD~~~ 102 (141)
+++.++-++.... ..+++++|+=+|+|..-.++. ++..|. ++++.|-+.
T Consensus 5 ~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 5 AIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred HHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 5677777765542 357899999999995544443 234564 599999884
No 388
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=26.80 E-value=27 Score=29.13 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=27.3
Q ss_pred ccEEEecCC---CCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395 72 ANVVELGAG---TSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP 112 (141)
Q Consensus 72 ~~vLELG~G---tGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~ 112 (141)
++|+=+|+| .|.++-.+++.|..|++.|..+. .++.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~--~v~aL~~ 42 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQE--LIDALNK 42 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHH--HHHHHhc
Confidence 367888998 34566677788889999998763 4444433
No 389
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=26.67 E-value=74 Score=25.50 Aligned_cols=31 Identities=45% Similarity=0.557 Sum_probs=20.5
Q ss_pred ccccEEEecCCCCCchhhh---hh-cCC-ceEEccCCc
Q 032395 70 SGANVVELGAGTSLPGLVA---AK-VGS-NVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~---a~-~ga-~Vv~tD~~~ 102 (141)
++++||=.|+ |.+|+++ |+ .|+ +|++++-++
T Consensus 177 ~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 6778888875 4555433 33 588 898887654
No 390
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.57 E-value=33 Score=29.88 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=20.3
Q ss_pred CCCCCchh--hhhhcCCceEEccCCcc
Q 032395 79 AGTSLPGL--VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 79 ~GtGl~~l--~~a~~ga~Vv~tD~~~~ 103 (141)
||+|+.|| ++..+|.+|.+.|+++.
T Consensus 16 gG~GMsglA~iL~~~G~~VsGSD~~~~ 42 (459)
T COG0773 16 GGIGMSGLAEILLNLGYKVSGSDLAES 42 (459)
T ss_pred ccccHHHHHHHHHhCCCceECcccccc
Confidence 37888887 45668999999999985
No 391
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.40 E-value=78 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=24.3
Q ss_pred ccccccEEEecCCCCCchhhhhh----cCCceEEc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAK----VGSNVTLT 98 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~----~ga~Vv~t 98 (141)
.|+||+|+=+|---|++|-.+.. .|++|++.
T Consensus 2 ~l~gkKviiiGdRDGiPgpAie~c~~~~gaevvfs 36 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFS 36 (150)
T ss_pred ccCCcEEEEEecCCCCCcHHHHHHHHhcCceEEEE
Confidence 47899999999999999986654 36666543
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.21 E-value=50 Score=23.15 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=24.5
Q ss_pred cccccccEEEecCC-CCCchh-hhhhcCC-ceEEccCCc
Q 032395 67 YRFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (141)
Q Consensus 67 ~~~~~~~vLELG~G-tGl~~l-~~a~~ga-~Vv~tD~~~ 102 (141)
..+++++++=+|+| +|-..+ .++..|+ +|+++.-+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 35789999999998 332222 3345677 588887765
No 393
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.19 E-value=58 Score=26.22 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.4
Q ss_pred ccccccEEEecCC--CCCchh---hhhhcCCceEEccCC
Q 032395 68 RFSGANVVELGAG--TSLPGL---VAAKVGSNVTLTDDS 101 (141)
Q Consensus 68 ~~~~~~vLELG~G--tGl~~l---~~a~~ga~Vv~tD~~ 101 (141)
.++||.+|=-|+| .|+.-- .+++.|++|++.|..
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~ 43 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV 43 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc
Confidence 4588999999998 676532 345679999998754
No 394
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=26.03 E-value=32 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=24.9
Q ss_pred ccccccEEEecCCC--CCchhhhhhcCCceEEccC
Q 032395 68 RFSGANVVELGAGT--SLPGLVAAKVGSNVTLTDD 100 (141)
Q Consensus 68 ~~~~~~vLELG~Gt--Gl~~l~~a~~ga~Vv~tD~ 100 (141)
.++|-+|||++... -+.+.++|-+||+||=++-
T Consensus 11 pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~ 45 (405)
T PRK03525 11 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIEN 45 (405)
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHcCCcEEEECC
Confidence 46888999998763 3446677888998888874
No 395
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=25.96 E-value=57 Score=24.82 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=25.3
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-.+ ++.|++|++++.++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 57899999998888764433 45688998887654
No 396
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.94 E-value=55 Score=27.41 Aligned_cols=32 Identities=44% Similarity=0.764 Sum_probs=24.7
Q ss_pred cccccEEEecCCCCCchhhhh----hcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a----~~ga~Vv~tD~~~ 102 (141)
+++++|+=+|+|. .|+.+| +.|++|+++|.++
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688999999886 555444 4689999999975
No 397
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.81 E-value=58 Score=24.58 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=24.1
Q ss_pred ccccccEEEecCCCCCchhhhh----hcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a----~~ga~Vv~tD~~~ 102 (141)
.+++|+||=.|+..|+ |..++ ..|++|++++.++
T Consensus 7 ~~~~k~vlItGa~g~i-G~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGI-GYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchH-HHHHHHHHHHcCCEEEEEeCCH
Confidence 3678999999975554 44333 3588999988775
No 398
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=25.77 E-value=69 Score=25.71 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.7
Q ss_pred ccccEEEecCCCCCchhhhh----hcCCceEEccCCc
Q 032395 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a----~~ga~Vv~tD~~~ 102 (141)
++++||=.| |+|.+|-.++ +.|++|+++|.++
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~ 38 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDP 38 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence 678888888 4555555443 3577999888655
No 399
>PRK06475 salicylate hydroxylase; Provisional
Probab=25.76 E-value=40 Score=27.75 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred ccEEEecCCCC-Cc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTS-LP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~ 102 (141)
++|+=+|+|.+ +. ++.+++.|.+|++.|..+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45667777743 22 234456677888888766
No 400
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=25.70 E-value=34 Score=24.91 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=22.7
Q ss_pred cccccEEEecCC-CCCchhhhh-hcCCceEEccCCcc
Q 032395 69 FSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a-~~ga~Vv~tD~~~~ 103 (141)
++..+|+=+|.| +|..++.++ .+|++|+..|..+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 455688888877 555555433 47999999998873
No 401
>PRK14851 hypothetical protein; Provisional
Probab=25.61 E-value=48 Score=30.23 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=34.2
Q ss_pred hcccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 66 RYRFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 66 ~~~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
...+++.+|+=+||| .|- +...+++.|- +++..|.+.+ -+.|+.++.
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~v--e~sNLNRQ~ 87 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQF--EPVNVNRQF 87 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEe--cccccccCc
Confidence 345688999999999 443 3446677887 9999999973 455665544
No 402
>PRK12367 short chain dehydrogenase; Provisional
Probab=25.59 E-value=56 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=26.7
Q ss_pred cccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 67 YRFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
..++++++|-.|++.|+..-++ ++.|++|++++.++
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 3457889999999888775544 35688998887764
No 403
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=25.49 E-value=77 Score=26.06 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=21.1
Q ss_pred ccccEEEecCCCCCchhh---------hhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLV---------AAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~---------~a~~ga~Vv~tD~~~~ 103 (141)
.+..|-|+|||-+-++.- +...+.+|++.|+...
T Consensus 180 ~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNV 222 (325)
T ss_pred CceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCC
Confidence 445899999998766531 1122336777776653
No 404
>PRK07236 hypothetical protein; Provisional
Probab=25.47 E-value=45 Score=27.30 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred cccEEEecCCC-CCc-hhhhhhcCCceEEccCCc
Q 032395 71 GANVVELGAGT-SLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 71 ~~~vLELG~Gt-Gl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
...|+=+|+|. |+. ++.+++.|.+|++.|..+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35688888883 433 334556677888888765
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=25.36 E-value=42 Score=27.98 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=22.6
Q ss_pred ccccEEEecCC-CCCchhhhh-hcCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a-~~ga~Vv~tD~~~ 102 (141)
++++|+=+|+| .|...+..+ .+|++|++.|.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45678888887 444444333 3588999999875
No 406
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.34 E-value=42 Score=27.87 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=30.1
Q ss_pred ccccccEEEecCC-CCC-chhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS 114 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl-~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~ 114 (141)
.+++++|+=+||| .|. +...+++.|. ++++.|.+.. ...|+.++.
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v--~~sNl~Rq~ 179 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV--DRSNLQRQI 179 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe--cchhhcccc
Confidence 4578899999998 333 2335567787 8999998863 334554443
No 407
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=25.28 E-value=84 Score=24.71 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=22.8
Q ss_pred ccccEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
....|+=+|+| .|+. ++.+++.|.+|++.|..+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 44578888888 4443 3345566778888888763
No 408
>PRK06184 hypothetical protein; Provisional
Probab=25.23 E-value=45 Score=28.53 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=22.4
Q ss_pred ccEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
..||=+|+| +|+. ++.+++.|.+|++.|..+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457888888 4443 3355677889999998763
No 409
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=25.20 E-value=90 Score=23.07 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=28.9
Q ss_pred ehhHH-HHHHHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 53 PCSVI-LAEYVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 53 ~as~~-la~~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
||+.. ..+.+......++||+|+=+|-+ .|.+ ++++.+.++.|+..+...
T Consensus 17 PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 44333 44445555557899999999987 4555 445556788998887765
No 410
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=25.19 E-value=51 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=14.5
Q ss_pred ccEEEecCCCCCchhhhhhc
Q 032395 72 ANVVELGAGTSLPGLVAAKV 91 (141)
Q Consensus 72 ~~vLELG~GtGl~~l~~a~~ 91 (141)
-.+.|+|||-|-+-+-++-.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~ 81 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK 81 (249)
T ss_pred ceEEeeccCccchhhhcccc
Confidence 36899999999666555543
No 411
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.06 E-value=61 Score=24.02 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=24.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++++||=.|++.|+...++ ++.|++|++++-++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999766654433 34578999998866
No 412
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=24.76 E-value=46 Score=27.81 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=19.1
Q ss_pred EEEecCC-CCCchh--hhhhcCCceEEccCCcc
Q 032395 74 VVELGAG-TSLPGL--VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 74 vLELG~G-tGl~~l--~~a~~ga~Vv~tD~~~~ 103 (141)
|+=+|.| +|. ++ ++.+.|++|+++|..+.
T Consensus 2 ~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 2 ILILGLGKTGR-AVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred EEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCC
Confidence 3445555 666 44 34557889999998764
No 413
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.75 E-value=65 Score=24.38 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=25.0
Q ss_pred cccccEEEecCCCCCchhh---hhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-+ +++.|++|++++.++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5788999999887765433 345688999988765
No 414
>PRK05717 oxidoreductase; Validated
Probab=24.55 E-value=65 Score=24.36 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=25.3
Q ss_pred cccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 67 YRFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 67 ~~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
..+++|++|=.|++.|+..-++ +..|++|+++|.+.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3568899998998766654333 34578999988664
No 415
>PRK08703 short chain dehydrogenase; Provisional
Probab=24.54 E-value=73 Score=23.77 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=23.5
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.||+.|+..-++ ++.|++|++++.++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 57889999997655543322 34578999888766
No 416
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=24.45 E-value=72 Score=24.17 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=24.8
Q ss_pred ccccccEEEecCCCCCchhh---hhhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~---~a~~ga~Vv~tD~~~ 102 (141)
.+++|++|=.|+..|+..-. +++.|++|+++|...
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 35789999999877665433 234688999888754
No 417
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=64 Score=26.93 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=36.5
Q ss_pred ccccceeeeehhHHHHHHHHhhhcccc-cccEEEecCCCCCchhhhhhcC----CceEEccCCcc
Q 032395 44 KEEYGLFVWPCSVILAEYVWQQRYRFS-GANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNR 103 (141)
Q Consensus 44 ~~~~g~~~W~as~~la~~l~~~~~~~~-~~~vLELG~GtGl~~l~~a~~g----a~Vv~tD~~~~ 103 (141)
..++..++|.--..+-.|+.+ +. .+.|+.||||.=.+..-+...+ .+++=.|+++.
T Consensus 64 nRGy~~R~~aI~~~v~~Fl~~----~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~ 124 (335)
T KOG2918|consen 64 NRGYWARTMAIRHAVRAFLEQ----TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEV 124 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHh----cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHH
Confidence 456666666666666666665 33 3589999999776665444443 26777788774
No 418
>PRK08303 short chain dehydrogenase; Provisional
Probab=24.18 E-value=66 Score=25.68 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=25.3
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCC
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDS 101 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~ 101 (141)
.+++|++|=.|++.|+..-.+ ++.|++|++++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 357899999999888654332 3458899998875
No 419
>PRK09126 hypothetical protein; Provisional
Probab=24.09 E-value=44 Score=27.16 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=20.1
Q ss_pred cEEEecCCCCCc--hhhhhhcCCceEEccCCc
Q 032395 73 NVVELGAGTSLP--GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~GtGl~--~l~~a~~ga~Vv~tD~~~ 102 (141)
.|+=+|+|.+=+ ++.+++.|.+|++.|..+
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 467788884422 234556788999998876
No 420
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.06 E-value=1.2e+02 Score=23.52 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=37.2
Q ss_pred HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.|.+.+... ..+.+..|||-=+|+|..++++.+.|.++++.++++.
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~ 255 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPE 255 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHH
Confidence 344444443 4567889999999999999999999999999999984
No 421
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=23.97 E-value=36 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=17.0
Q ss_pred cEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
.|+=+|+| .|+. ++.+++.|++|++.|.++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 35667777 4544 3344567889999999984
No 422
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=23.93 E-value=67 Score=24.29 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=25.1
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++++||=.|++.|+..-++ +..|++|++++.+.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~ 45 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 57899999998877765443 34578888887654
No 423
>PRK08265 short chain dehydrogenase; Provisional
Probab=23.85 E-value=69 Score=24.45 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=24.9
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-.+ ++.|++|+++|.++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889999998776654333 44688999998875
No 424
>PLN02827 Alcohol dehydrogenase-like
Probab=23.85 E-value=48 Score=27.22 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=21.7
Q ss_pred ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
.-+|.+||=.|+| .|+..+.+++ +|+ .|+++|.++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 3468899888875 3333333343 477 588888554
No 425
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.84 E-value=69 Score=24.28 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=25.6
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-.+ ++.|++|++++.+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999887765443 45688888887663
No 426
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=23.64 E-value=46 Score=27.77 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=19.5
Q ss_pred EEEecCC-CCCc-hhhhhhcC-CceEEccCCc
Q 032395 74 VVELGAG-TSLP-GLVAAKVG-SNVTLTDDSN 102 (141)
Q Consensus 74 vLELG~G-tGl~-~l~~a~~g-a~Vv~tD~~~ 102 (141)
||=+|+| .|+. ++.+++.| ++|++.|..+
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~ 33 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKMP 33 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence 5667777 4543 34556678 8899888776
No 427
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.57 E-value=76 Score=23.61 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=24.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|+..|+..-++ ++.|++|++++-++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56788888888766654433 34588999998876
No 428
>PRK07233 hypothetical protein; Provisional
Probab=23.52 E-value=45 Score=27.28 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=16.0
Q ss_pred EEEecCC-CCCchh-hhhhcCCceEEccCCcc
Q 032395 74 VVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 74 vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~~ 103 (141)
|+=+|+| +|+.+- .+++.|.+|++.|..+.
T Consensus 2 vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4555665 333322 23345667777777763
No 429
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.39 E-value=34 Score=27.18 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=18.6
Q ss_pred CCCCCchhhh------hhcCCceEEccCCcc
Q 032395 79 AGTSLPGLVA------AKVGSNVTLTDDSNR 103 (141)
Q Consensus 79 ~GtGl~~l~~------a~~ga~Vv~tD~~~~ 103 (141)
-|+|-.++.+ ++.|.+|+++|.++.
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQ 41 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH
Confidence 3677666644 456889999999983
No 430
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=23.39 E-value=50 Score=26.72 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=21.8
Q ss_pred ccccccEEEecCCCCCchhhh---hh-cCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AK-VGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~-~ga-~Vv~tD~~~ 102 (141)
.-++.+||=.|+| .+|+++ |+ +|+ +|++++.++
T Consensus 185 ~~~g~~VlV~G~g--~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 185 VKKGSTVAIFGLG--AVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 3467888888864 444433 33 577 799988765
No 431
>PRK11430 putative CoA-transferase; Provisional
Probab=23.35 E-value=41 Score=28.20 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=22.2
Q ss_pred ccccccEEEecCCC--CCchhhhhhcCCceEEccC
Q 032395 68 RFSGANVVELGAGT--SLPGLVAAKVGSNVTLTDD 100 (141)
Q Consensus 68 ~~~~~~vLELG~Gt--Gl~~l~~a~~ga~Vv~tD~ 100 (141)
.++|-+|||++... -+.+..+|-+||+||=++-
T Consensus 9 pL~GirVldls~~~aGP~a~~~LAdlGAeVIKVE~ 43 (381)
T PRK11430 9 PFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEP 43 (381)
T ss_pred CcCCCEEEEeCCcchHHHHHHHHHHcCCCEEEECC
Confidence 46788888887652 2335566777888777764
No 432
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.33 E-value=78 Score=23.75 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=24.5
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.+++++|=.|++.|+..-.+ +..|++|++++.++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 36788998998776654433 34588999998765
No 433
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.31 E-value=85 Score=24.02 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=23.6
Q ss_pred cccccEEEecCC-CCCchhhhh----hcCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAA----KVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a----~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|+| ++-+|..++ +.|++|++++.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 578999999994 343444433 4588999988653
No 434
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=23.26 E-value=73 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=26.2
Q ss_pred ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~ 103 (141)
.|.+|.-+|+|.--+--++++..++|.+.|+++.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~a 96 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPA 96 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCceeEEEeCCHH
Confidence 5678899998865444456677789999999995
No 435
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=23.14 E-value=48 Score=20.50 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=13.5
Q ss_pred CCCCchhhhh----hcCCceEEccCCcc
Q 032395 80 GTSLPGLVAA----KVGSNVTLTDDSNR 103 (141)
Q Consensus 80 GtGl~~l~~a----~~ga~Vv~tD~~~~ 103 (141)
|.|+.|+.+| +.+.+|++.|..+.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 3444455443 34668888877763
No 436
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.99 E-value=51 Score=29.45 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=24.3
Q ss_pred ccccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
.+++|+=+|+| .|+... .+++.|.+|++.|-.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57899999999 444432 4456788999998765
No 437
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=22.93 E-value=74 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=24.5
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46888999998777654333 34588999988765
No 438
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=22.91 E-value=68 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.0
Q ss_pred cccccEEEecCCCCCchhh---hhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-. ++..|++|++++.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788999999887775433 244588999988765
No 439
>PRK06125 short chain dehydrogenase; Provisional
Probab=22.87 E-value=74 Score=24.10 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.0
Q ss_pred cccccEEEecCCCCCchhh---hhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~---~a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-. ++..|++|++++.++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5788999999877765433 345688999998765
No 440
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.81 E-value=79 Score=23.86 Aligned_cols=35 Identities=43% Similarity=0.524 Sum_probs=25.7
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.+++|++|=.|++.|+..-++ ++.|++|+++|.++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 367889999998877665433 34588999988764
No 441
>PRK07791 short chain dehydrogenase; Provisional
Probab=22.81 E-value=73 Score=24.92 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=25.4
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCC
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDS 101 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~ 101 (141)
++++++|=.|++.|+..-.+ ++.|++|+++|.+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCC
Confidence 57899999999988765443 4568899888765
No 442
>PRK08401 L-aspartate oxidase; Provisional
Probab=22.78 E-value=49 Score=28.23 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=20.1
Q ss_pred cEEEecCC-CCCch-hhhhhcCCceEEccCCc
Q 032395 73 NVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~ 102 (141)
.||=+|+| .|+.+ +.++..|++|++++..+
T Consensus 3 DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 3 KVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred eEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57778888 46543 44456688888887654
No 443
>PRK10037 cell division protein; Provisional
Probab=22.75 E-value=34 Score=26.42 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=12.5
Q ss_pred hhhhhcCCceEEccCCcc
Q 032395 86 LVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 86 l~~a~~ga~Vv~tD~~~~ 103 (141)
..+++.|.+|.+.|.++.
T Consensus 24 ~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 24 WSLQMLGENVLVIDACPD 41 (250)
T ss_pred HHHHhcCCcEEEEeCChh
Confidence 345566778888888774
No 444
>PRK08013 oxidoreductase; Provisional
Probab=22.68 E-value=53 Score=27.11 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=21.4
Q ss_pred ccEEEecCC-CCCc-hhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
..|+=+|+| .|+. ++.+++.|.+|++.|..+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 357777888 3433 3345567889999998763
No 445
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.66 E-value=76 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=25.1
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 47889999998877654433 34588999998775
No 446
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.61 E-value=52 Score=26.78 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=19.6
Q ss_pred ccEEEecCCCC-Cc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTS-LP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..|+=+|+|.+ +. ++.+++.|.+|++.|..+
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 46777777743 32 224445677888888776
No 447
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.58 E-value=81 Score=23.78 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.7
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-.+ ++.|++|++++.++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46788998898877654433 45688999988765
No 448
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=22.47 E-value=48 Score=27.51 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=23.0
Q ss_pred ccccEEEecC-C-CCCchhhhhhc---CC-ceEEccCCc
Q 032395 70 SGANVVELGA-G-TSLPGLVAAKV---GS-NVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~-G-tGl~~l~~a~~---ga-~Vv~tD~~~ 102 (141)
.+.+|+=+|+ | .|+..+.+|+. |+ +|+++|.++
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~ 213 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND 213 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH
Confidence 5678888873 4 66666656664 44 799999876
No 449
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.28 E-value=50 Score=27.06 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=21.5
Q ss_pred ccEEEecCCCC-Cc-hhhhhhcCCceEEccCCcc
Q 032395 72 ANVVELGAGTS-LP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 72 ~~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
..|+=+|+|.+ +. ++.+++.|.+|++.|..+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 46788888843 32 3345567888999888764
No 450
>PRK06753 hypothetical protein; Provisional
Probab=22.20 E-value=53 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=16.8
Q ss_pred cEEEecCCC-CCc-hhhhhhcCCceEEccCCc
Q 032395 73 NVVELGAGT-SLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~Gt-Gl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
+|+=+|+|. |+. ++.+++.|.+|++.|..+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 455566663 222 223445667777777665
No 451
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=22.19 E-value=51 Score=25.14 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=16.7
Q ss_pred EEEecCCCC-Cc-hhhhhhcCCceEEccCCc
Q 032395 74 VVELGAGTS-LP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 74 vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~ 102 (141)
|+=+|+|.+ +. ++.+++.|.+|++.|..+
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 455666633 22 223445567888888775
No 452
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=22.16 E-value=34 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=28.2
Q ss_pred cEEEecCCCCCchhhhhh-cC---CceEEccCCccceeccccCCCchh
Q 032395 73 NVVELGAGTSLPGLVAAK-VG---SNVTLTDDSNRIELLMTSLPPSHI 116 (141)
Q Consensus 73 ~vLELG~GtGl~~l~~a~-~g---a~Vv~tD~~~~~~~l~n~~~N~~~ 116 (141)
.+.|=-||.|.+--++.- .+ ..|+++|+++ +.|+..++|..+
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~--~aL~lA~kNL~L 99 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE--DALELARKNLSL 99 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H--HHHHHHHHHHHC
T ss_pred eeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH--HHHHHHHHhhhh
Confidence 788889999976433332 23 2899999999 577777777654
No 453
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=22.04 E-value=54 Score=25.60 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~ 102 (141)
.+.+||-.|+| +|...+.+|+ .|.+|++++-++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~ 199 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE 199 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 56677777765 3444444444 577898888765
No 454
>PRK07121 hypothetical protein; Validated
Probab=21.99 E-value=50 Score=28.23 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred ccEEEecCC-CCCc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||=+|+| .|+. ++.++..|++|++.+...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467788888 4553 334556788998888765
No 455
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=21.96 E-value=51 Score=27.81 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=21.6
Q ss_pred ccEEEecCC-CCCc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||=+|+| .|+. ++.+++.|++|++.|..+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357778888 4554 345566788898888765
No 456
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=21.90 E-value=76 Score=27.09 Aligned_cols=37 Identities=35% Similarity=0.511 Sum_probs=26.6
Q ss_pred hcccccccEEEecCCCCCchhh--hhhcCCceEEccCCc
Q 032395 66 RYRFSGANVVELGAGTSLPGLV--AAKVGSNVTLTDDSN 102 (141)
Q Consensus 66 ~~~~~~~~vLELG~GtGl~~l~--~a~~ga~Vv~tD~~~ 102 (141)
...|+||+|+-+|+|.--.-|+ +++.|++|++.=-++
T Consensus 170 ~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 170 PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 4578999999999995555443 345667888776555
No 457
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=21.88 E-value=93 Score=26.29 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=31.0
Q ss_pred eeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhhhhhcCCceEEccCCccc
Q 032395 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSNRI 104 (141)
Q Consensus 50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~~a~~ga~Vv~tD~~~~~ 104 (141)
.+|+-+.+.-+.|.- -++.+||-+.+| +-.+.+ +..-.++|+++|+|+.+
T Consensus 19 ~~WEDp~vD~~aL~i----~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q 69 (380)
T PF11899_consen 19 QCWEDPRVDMEALNI----GPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQ 69 (380)
T ss_pred cccCCcHHHHHHhCC----CCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHH
Confidence 467776555554432 256688888765 333333 33444599999999963
No 458
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.83 E-value=37 Score=26.13 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.3
Q ss_pred hhhhcCCceEEccCCcc
Q 032395 87 VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 87 ~~a~~ga~Vv~tD~~~~ 103 (141)
.+++.|.+|.+.|.++.
T Consensus 24 ~La~~G~kVlliD~Dpq 40 (270)
T cd02040 24 ALAEMGKKVMIVGCDPK 40 (270)
T ss_pred HHHhCCCeEEEEEcCCC
Confidence 34455666777777663
No 459
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.82 E-value=1.3e+02 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=32.4
Q ss_pred eeehhHHHHHHH-HhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccC
Q 032395 51 VWPCSVILAEYV-WQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDD 100 (141)
Q Consensus 51 ~W~as~~la~~l-~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~ 100 (141)
..||+..-.-.+ .+..-.++||+|+=+|.| .|.+ ++++.+.+|.|+...-
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs 189 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI 189 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 356665544434 434457899999999988 5555 3344456788877653
No 460
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.81 E-value=66 Score=27.62 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=23.9
Q ss_pred cccccEEEecCC-CCCch-hhhhhcCCceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~ 102 (141)
+++++|+=+|.| +|+.. .++.+.|++|++.|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 457788888888 55431 23455688999999765
No 461
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=21.78 E-value=54 Score=26.94 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=19.2
Q ss_pred cEEEecCC-CCCc-hhhhhhcCCceEEccCCc
Q 032395 73 NVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 73 ~vLELG~G-tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
.|+=+|+| +|+. +..+++.|.+|++.|-.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45666766 4443 234556678898888765
No 462
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.77 E-value=80 Score=23.77 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.6
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-++ ++.|++|++++-++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 357899999998777654433 34588999998765
No 463
>PRK05868 hypothetical protein; Validated
Probab=21.75 E-value=56 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=18.4
Q ss_pred cEEEecCCCC-Cc-hhhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAGTS-LP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|+=+|+|.+ +. ++.+++.|.+|++.|..+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4555666633 21 2234556778888887764
No 464
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.70 E-value=81 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=25.7
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-++ +..|++|++++.++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 357899999998877764433 34588999888765
No 465
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=21.69 E-value=95 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=21.2
Q ss_pred cccccEEEecCCCCCchhhh---hh-cCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AK-VGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~-~ga~Vv~tD~~~ 102 (141)
-.+.+||=.|+ |.+|.++ ++ +|++|++++-++
T Consensus 162 ~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 162 KPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 35778888885 4444433 33 477888887765
No 466
>PRK07856 short chain dehydrogenase; Provisional
Probab=21.68 E-value=80 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
+++|++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 57889999998877754433 34578898888765
No 467
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.67 E-value=1.1e+02 Score=23.03 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=25.0
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+...++ +..|++|++++.++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468899999998766654433 33578899888765
No 468
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.66 E-value=59 Score=27.35 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=23.2
Q ss_pred cccccEEEecCCCCCchhhh----hhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~----a~~ga~Vv~tD~~~~ 103 (141)
+.+++|+=+|.| -.|+.+ ++.|++|++.|..+.
T Consensus 3 ~~~~~~~v~G~g--~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLG--GTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357788888877 234433 446889999998764
No 469
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=21.66 E-value=1.1e+02 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=24.4
Q ss_pred ccccccEEEecCCCCCchhhhhh----cCCceEEc
Q 032395 68 RFSGANVVELGAGTSLPGLVAAK----VGSNVTLT 98 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~a~----~ga~Vv~t 98 (141)
.|+||+++=+|=.-|++|-.... .|++|++.
T Consensus 3 ~l~gKkviiiGdRDGiPgpAie~c~k~~gaevvfs 37 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPAIEECVKTTGAEVVFS 37 (154)
T ss_pred cccCcEEEEEecCCCCCcHHHHHHHhccCceEEEE
Confidence 47899999999999999986643 46776554
No 470
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=21.59 E-value=58 Score=25.99 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=21.4
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCCc-eEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga~-Vv~tD~~~ 102 (141)
-++++||=+|+| .|+..+.+|+ +|++ |++++.++
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 367888888875 3333333343 5775 78887655
No 471
>PRK07814 short chain dehydrogenase; Provisional
Probab=21.53 E-value=86 Score=23.91 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889999997655544322 34588999888765
No 472
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=21.53 E-value=1.2e+02 Score=23.05 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=20.9
Q ss_pred ccccEEEecCC-CCCchhhhhh-cCCc-eEEccCCc
Q 032395 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~G-tGl~~l~~a~-~ga~-Vv~tD~~~ 102 (141)
++.++|-.|+| .|...+.+|+ +|.+ |++++-++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 67788888765 2333333444 4676 99998654
No 473
>PRK07045 putative monooxygenase; Reviewed
Probab=21.39 E-value=54 Score=26.76 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEecCCC-CCc-hhhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAGT-SLP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~Gt-Gl~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
+|+=+|+|. |+. ++.+++.|.+|++.|..+.
T Consensus 7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 678888884 433 3355667889999998774
No 474
>PRK06841 short chain dehydrogenase; Provisional
Probab=21.37 E-value=86 Score=23.52 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=25.2
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++-++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47889999998877765433 45688999888765
No 475
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=21.32 E-value=57 Score=26.42 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=21.6
Q ss_pred cccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
-++.+||=.|+| .|+..+.+|+ .|+ +|+++|-++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 467888888864 3333333343 577 799888765
No 476
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=21.25 E-value=1.2e+02 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=23.3
Q ss_pred ccccccEEEecCCCCCch-hh--hhhcCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPG-LV--AAKVGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~-l~--~a~~ga-~Vv~tD~~~ 102 (141)
.++++++|=+|+| |..- +. ++..|+ +|++.+.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4578899999998 5442 22 235687 588888764
No 477
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=21.23 E-value=1.2e+02 Score=24.10 Aligned_cols=60 Identities=23% Similarity=0.177 Sum_probs=36.2
Q ss_pred ccccceeeeehhH-HHHHHHHhhh---cccccccEEEecCCCCCchhhhhh-cCC--ceEEccCCcc
Q 032395 44 KEEYGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNR 103 (141)
Q Consensus 44 ~~~~g~~~W~as~-~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~~a~-~ga--~Vv~tD~~~~ 103 (141)
......++|+.-. -||..+...- .+.+|.+||=||+.+|-.--.++- .|. .|.+.+.++.
T Consensus 43 ~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r 109 (229)
T PF01269_consen 43 GKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR 109 (229)
T ss_dssp ---EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CCccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecch
Confidence 3456889998643 3555555532 234688999999999976444443 342 8999999884
No 478
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=21.22 E-value=92 Score=24.91 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=24.1
Q ss_pred ccccccEEEecCCC-CCchh-hhhhcCC-ceEEccCCc
Q 032395 68 RFSGANVVELGAGT-SLPGL-VAAKVGS-NVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~Gt-Gl~~l-~~a~~ga-~Vv~tD~~~ 102 (141)
..++++|+=+|||- |...+ .+++.|. +|++.|.+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 35778999999993 32222 3345676 899988875
No 479
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.11 E-value=98 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=27.6
Q ss_pred cccccEEEecCCCCCch-h--hhhhcCCceEEccCCcc
Q 032395 69 FSGANVVELGAGTSLPG-L--VAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~-l--~~a~~ga~Vv~tD~~~~ 103 (141)
+.|++||--|+|.|+.- + .+++.|++|++.--++.
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a 42 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA 42 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH
Confidence 47899999999999873 3 45678999999877763
No 480
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=21.11 E-value=53 Score=28.64 Aligned_cols=31 Identities=39% Similarity=0.543 Sum_probs=21.8
Q ss_pred ccEEEecCC-CCCch-hhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~ 102 (141)
..||=+|+| .|+.+ +.++..|++|++.+..+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 457888888 56543 45566788998887765
No 481
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=21.07 E-value=59 Score=26.16 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=21.2
Q ss_pred ccEEEecCC-CCCch-hhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~ 102 (141)
..|+-+|+| +|+.. ..+++.|.+|++.|-.+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 467778866 45432 24567788999999876
No 482
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.06 E-value=1.5e+02 Score=24.15 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=34.4
Q ss_pred eeehhHHHHHH-HHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 51 VWPCSVILAEY-VWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la~~-l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||+..-.-. +......+.||+|.=+|.+ .|.+ ++++.+.+|.|+...-..
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T 191 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT 191 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 46777554444 4444457899999999988 5665 334556678888765443
No 483
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.04 E-value=59 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=19.3
Q ss_pred cEEEecCC-CCCch-hhhhhcCCceEEccCCcc
Q 032395 73 NVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 73 ~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~~ 103 (141)
+|--+|=| .||+. +..|+.|.+|++.|+++.
T Consensus 11 ~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~ 43 (436)
T COG0677 11 TIGVIGLGYVGLPLAAAFASAGFKVIGVDINQK 43 (436)
T ss_pred EEEEEccccccHHHHHHHHHcCCceEeEeCCHH
Confidence 33334434 44442 244667889999999983
No 484
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.99 E-value=1.3e+02 Score=24.41 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=33.0
Q ss_pred eeehhHHHHH-HHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCC
Q 032395 51 VWPCSVILAE-YVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDS 101 (141)
Q Consensus 51 ~W~as~~la~-~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~ 101 (141)
..||+..-+- .+.+..-.++|++|.=+|.| .|.+ +.++.+.+++|+.....
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 3566655443 44444457899999999988 3554 33445678889887544
No 485
>PLN02240 UDP-glucose 4-epimerase
Probab=20.96 E-value=88 Score=24.86 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.2
Q ss_pred cccccEEEecCCCCCchhhhh----hcCCceEEccC
Q 032395 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDD 100 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~a----~~ga~Vv~tD~ 100 (141)
+++++||=.| |+|.+|..++ ..|.+|++.|.
T Consensus 3 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4567788777 5566665443 34678888764
No 486
>PRK05872 short chain dehydrogenase; Provisional
Probab=20.94 E-value=80 Score=24.79 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=25.4
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-++ ++.|++|++++.++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE 43 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357889999998877654433 44688998888765
No 487
>PRK06701 short chain dehydrogenase; Provisional
Probab=20.93 E-value=85 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.2
Q ss_pred ccccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
.++++++|=.|++.|+..-++ ++.|++|++++.+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 557899999998777754433 34588888887653
No 488
>PRK07208 hypothetical protein; Provisional
Probab=20.89 E-value=61 Score=27.31 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=14.9
Q ss_pred ccEEEecCC-CCCchh-hhhhcCCceEEccCCc
Q 032395 72 ANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~ 102 (141)
++|+=+|+| +|+.+- .+++.|.+|++.|-.+
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345666666 333321 2233455666665544
No 489
>PRK06138 short chain dehydrogenase; Provisional
Probab=20.69 E-value=91 Score=23.25 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=24.4
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.||..|+..-++ ++.|++|++++.+.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 47889999998766655433 34578999887664
No 490
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.68 E-value=86 Score=23.35 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=22.8
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-++ ++.|++|++++.+.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 36788888887655544433 34577888887765
No 491
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.56 E-value=83 Score=23.39 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=24.0
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+...++ ++.|++|+++|.++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46788999998766654433 34577888888765
No 492
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.54 E-value=1.1e+02 Score=23.29 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=24.7
Q ss_pred ccccccEEEecCCCC-Cchhhh----hhcCCceEEccCCc
Q 032395 68 RFSGANVVELGAGTS-LPGLVA----AKVGSNVTLTDDSN 102 (141)
Q Consensus 68 ~~~~~~vLELG~GtG-l~~l~~----a~~ga~Vv~tD~~~ 102 (141)
.+++|++|=.|++.| -+|..+ ++.|++|++++.++
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 458899999998852 334433 44688999988764
No 493
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.53 E-value=48 Score=27.92 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=16.5
Q ss_pred EEEecCCCC-Cc-hhhhhhcCCceEEccCCcc
Q 032395 74 VVELGAGTS-LP-GLVAAKVGSNVTLTDDSNR 103 (141)
Q Consensus 74 vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~~ 103 (141)
|+=+|.|++ +. ++.+|+.|++|++++..+.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 455677743 22 2345677889999998774
No 494
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.44 E-value=84 Score=24.07 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=24.2
Q ss_pred cccccEEEecCCCCCchhhh---hhcCCceEEccCCc
Q 032395 69 FSGANVVELGAGTSLPGLVA---AKVGSNVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~GtGl~~l~~---a~~ga~Vv~tD~~~ 102 (141)
++++++|=.|++.|+..-.+ +..|++|++++.++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57889999997665554332 34588999998764
No 495
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=20.41 E-value=1e+02 Score=24.85 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=22.4
Q ss_pred cccccEEEecCC-CCCchhhhh-hcCC-ceEEccCCc
Q 032395 69 FSGANVVELGAG-TSLPGLVAA-KVGS-NVTLTDDSN 102 (141)
Q Consensus 69 ~~~~~vLELG~G-tGl~~l~~a-~~ga-~Vv~tD~~~ 102 (141)
+.+++|+=+|+| .|...+... ..|+ +|+++|.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578999999986 443332222 2354 788898875
No 496
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=20.29 E-value=47 Score=28.11 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=21.7
Q ss_pred cccccEEEecCCC--CCchhhhhhcCCceEEccC
Q 032395 69 FSGANVVELGAGT--SLPGLVAAKVGSNVTLTDD 100 (141)
Q Consensus 69 ~~~~~vLELG~Gt--Gl~~l~~a~~ga~Vv~tD~ 100 (141)
++|-+||||+... -+.+.++|-+||+||=++-
T Consensus 4 L~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~ 37 (415)
T TIGR03253 4 LDGIKVLDFTHVQSGPSCTQMLAWLGADVIKIER 37 (415)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcEEEeCC
Confidence 5777888887652 2345667777887777664
No 497
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.29 E-value=1.2e+02 Score=22.31 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=22.9
Q ss_pred hcccccccEEEecC-C-CCCc-hhhhhhcCCceEEccCCc
Q 032395 66 RYRFSGANVVELGA-G-TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 66 ~~~~~~~~vLELG~-G-tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
...+++++++=+|+ | .|.. ...+++.|++|++.+-+.
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34678899999996 3 2321 123345577888877654
No 498
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.27 E-value=1.5e+02 Score=24.21 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=34.1
Q ss_pred eeehhHHHH-HHHHhhhcccccccEEEecCC--CCCc-hhhhhhcCCceEEccCCc
Q 032395 51 VWPCSVILA-EYVWQQRYRFSGANVVELGAG--TSLP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 51 ~W~as~~la-~~l~~~~~~~~~~~vLELG~G--tGl~-~l~~a~~ga~Vv~tD~~~ 102 (141)
..||+..-. +.+....-.++||+|+=+|.+ .|.+ ++++.+.+|.|+...-..
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T 194 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT 194 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC
Confidence 356655543 344444457899999999987 5555 334455678898876644
No 499
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=20.25 E-value=1.2e+02 Score=23.99 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred ccccEEEecCCC-CCchhhhhh-cCC-ceEEccCCc
Q 032395 70 SGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSN 102 (141)
Q Consensus 70 ~~~~vLELG~Gt-Gl~~l~~a~-~ga-~Vv~tD~~~ 102 (141)
++.+||-.|||. |...+.+++ .|. +|++++.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~ 200 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 788888888652 333333333 577 788888754
No 500
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=20.19 E-value=62 Score=27.51 Aligned_cols=31 Identities=39% Similarity=0.534 Sum_probs=18.6
Q ss_pred ccEEEecCCCC-Cc-hhhhhhcCCceEEccCCc
Q 032395 72 ANVVELGAGTS-LP-GLVAAKVGSNVTLTDDSN 102 (141)
Q Consensus 72 ~~vLELG~GtG-l~-~l~~a~~ga~Vv~tD~~~ 102 (141)
+.|+=+|+|.| +. +..+++.|.+|++.+.++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45666777744 32 223355677888877765
Done!