Your job contains 1 sequence.
>032397
MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP
TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIE
LLMHLLYGYLGSCKMQLNYSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032397
(141 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152297 - symbol:AT5G38890 species:3702 "Arabi... 381 3.1e-35 1
DICTYBASE|DDB_G0285377 - symbol:DDB_G0285377 "3'-5' exori... 143 5.2e-10 1
ZFIN|ZDB-GENE-080926-3 - symbol:exosc1 "exosome component... 124 5.3e-08 1
UNIPROTKB|G4ML19 - symbol:MGG_08628 "3'-5' exoribonucleas... 85 1.0e-07 2
FB|FBgn0032346 - symbol:Csl4 "Csl4" species:7227 "Drosoph... 121 1.3e-07 1
UNIPROTKB|B1AMU4 - symbol:EXOSC1 "Exosome complex compone... 112 1.0e-06 1
UNIPROTKB|Q9Y3B2 - symbol:EXOSC1 "Exosome complex compone... 112 1.3e-06 1
UNIPROTKB|Q5E9E9 - symbol:EXOSC1 "Uncharacterized protein... 111 1.7e-06 1
MGI|MGI:1913833 - symbol:Exosc1 "exosome component 1" spe... 111 1.7e-06 1
UNIPROTKB|E2RT56 - symbol:EXOSC1 "Uncharacterized protein... 110 2.8e-06 1
WB|WBGene00012966 - symbol:exos-1 species:6239 "Caenorhab... 110 2.8e-06 1
UNIPROTKB|F1S8Y4 - symbol:EXOSC1 "Uncharacterized protein... 109 3.0e-06 1
POMBASE|SPCC1840.11 - symbol:csl4 "exosome subunit Csl4 (... 96 0.00074 1
>TAIR|locus:2152297 [details] [associations]
symbol:AT5G38890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 OMA:RAYYLST EMBL:BT030080
EMBL:AK316921 IPI:IPI00532795 RefSeq:NP_568559.2 UniGene:At.30376
ProteinModelPortal:A2RVT9 SMR:A2RVT9 IntAct:A2RVT9 STRING:A2RVT9
PaxDb:A2RVT9 PRIDE:A2RVT9 DNASU:833880 EnsemblPlants:AT5G38890.1
GeneID:833880 KEGG:ath:AT5G38890 TAIR:At5g38890 InParanoid:A2RVT9
PhylomeDB:A2RVT9 ProtClustDB:CLSN2681079 Genevestigator:A2RVT9
Uniprot:A2RVT9
Length = 191
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 74/104 (71%), Positives = 89/104 (85%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQR VEVTGHKA
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HGP+PE GSVVIARVTKVMT+MA+ DI+CVG+K+VRE F+G+IR
Sbjct: 63 HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIR 106
>DICTYBASE|DDB_G0285377 [details] [associations]
symbol:DDB_G0285377 "3'-5' exoribonuclease CSL4
homolog" species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447
dictyBase:DDB_G0285377 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0000178 eggNOG:COG1096 KO:K07573 InterPro:IPR025721
Pfam:PF14382 RefSeq:XP_638281.1 ProteinModelPortal:Q54N99
STRING:Q54N99 EnsemblProtists:DDB0186485 GeneID:8625089
KEGG:ddi:DDB_G0285377 InParanoid:Q54N99 OMA:NGIIRIQ Uniprot:Q54N99
Length = 156
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 36/119 (30%), Positives = 63/119 (52%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ----------- 58
++TPG+ L K ++ + +G YV H G +Y+S+ G + D+ ++
Sbjct: 9 IITPGQRLCKESDFISSEGTYV--HKGYIYSSVLGFKHVIKRNIDTTNENNVNNSNNSNE 66
Query: 59 ----RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ + V K VPE GS+V +V ++ ++AS I+CVG K+++E F+GIIR
Sbjct: 67 IENNKDYIVVLKEKEPSVVPEIGSIVTVQVLRINPKLASVAILCVGTKALKETFNGIIR 125
>ZFIN|ZDB-GENE-080926-3 [details] [associations]
symbol:exosc1 "exosome component 1" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR019495 Pfam:PF10447
ZFIN:ZDB-GENE-080926-3 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:BX119918 IPI:IPI00512843 RefSeq:NP_001139039.1
UniGene:Dr.53954 Ensembl:ENSDART00000083633 GeneID:558857
NextBio:20882664 Uniprot:B8A4H5
Length = 194
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQRPTVEVTG 66
M L PGE L + G G Y+ +H G ++ASL G +LR + ++ P + V
Sbjct: 4 MKLCVPGERLCSTEDCIPGTGTYL-RH-GYIFASLAGYVLRK-----NEGEELPVISVVR 56
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + R A I+ VG+ ++++F G IR
Sbjct: 57 ETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIR 103
>UNIPROTKB|G4ML19 [details] [associations]
symbol:MGG_08628 "3'-5' exoribonuclease CSL4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0009405 "pathogenesis"
evidence=IMP] InterPro:IPR019495 Pfam:PF10447 GO:GO:0009405
GO:GO:0003723 GO:GO:0000178 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:CM001231 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 RefSeq:XP_003711058.1
ProteinModelPortal:G4ML19 EnsemblFungi:MGG_08628T0 GeneID:2678864
KEGG:mgr:MGG_08628 Uniprot:G4ML19
Length = 213
Score = 85 (35.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRP 60
L PG++LG ++ +AG G ++ H +Y+SL G + P P P +RP
Sbjct: 9 LALPGQLLGPSSRYRAGPGTHI--HEANLYSSLLGAVSITQPAKPAGPTKRP 58
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 60 PTVEVTGHK-AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
PT+ V + A +PE G VV+ RVT+V + A I+ VG + ++ G+IR
Sbjct: 76 PTISVQRRRRAAAALPEVGDVVLCRVTRVSHQQAIVAILVVGDAVLDAEWQGVIR 130
>FB|FBgn0032346 [details] [associations]
symbol:Csl4 "Csl4" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0010468 "regulation of gene expression" evidence=IMP]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005737 EMBL:AE014134
GO:GO:0003723 GO:GO:0016787 GO:GO:0010468 GO:GO:0035327
GO:GO:0000176 eggNOG:COG1096 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AY095082 RefSeq:NP_609492.1
UniGene:Dm.7278 SMR:Q9VKJ4 IntAct:Q9VKJ4 MINT:MINT-905337
STRING:Q9VKJ4 EnsemblMetazoa:FBtr0080226 GeneID:34548
KEGG:dme:Dmel_CG6249 UCSC:CG6249-RA CTD:34548 FlyBase:FBgn0032346
InParanoid:Q9VKJ4 OrthoDB:EOG4QZ632 GenomeRNAi:34548 NextBio:789009
Uniprot:Q9VKJ4
Length = 204
Score = 121 (47.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 35/114 (30%), Positives = 54/114 (47%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L + + + G G Y + NG +YAS +G++ DS D+
Sbjct: 1 MSEQQDETVVCLPGERLCRTEDSIVLGIGTY--EQNGYIYASKSGIVNI----EDSGDKC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + A I CV + + G++R
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 108
>UNIPROTKB|B1AMU4 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634
GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330 EMBL:AL355490
UniGene:Hs.632089 HGNC:HGNC:17286 HOVERGEN:HBG051516
InterPro:IPR025721 Pfam:PF14382 IPI:IPI00642493 SMR:B1AMU4
Ensembl:ENST00000370886 Uniprot:B1AMU4
Length = 178
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/101 (30%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>UNIPROTKB|Q9Y3B2 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IDA;NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126 GO:GO:0005829
GO:GO:0010467 GO:GO:0005730 EMBL:CH471066 GO:GO:0003723
GO:GO:0000178 GO:GO:0006364 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316 GO:GO:0043928
EMBL:AF151866 EMBL:AK313717 EMBL:AL355490 EMBL:BC022067
IPI:IPI00032823 RefSeq:NP_057130.1 UniGene:Hs.632089 PDB:2NN6
PDBsum:2NN6 ProteinModelPortal:Q9Y3B2 SMR:Q9Y3B2 IntAct:Q9Y3B2
STRING:Q9Y3B2 PhosphoSite:Q9Y3B2 DMDM:14285410 PaxDb:Q9Y3B2
PRIDE:Q9Y3B2 DNASU:51013 Ensembl:ENST00000370902 GeneID:51013
KEGG:hsa:51013 UCSC:uc001kni.3 CTD:51013 GeneCards:GC10M099191
HGNC:HGNC:17286 HPA:HPA038370 MIM:606493 neXtProt:NX_Q9Y3B2
PharmGKB:PA134900737 HOVERGEN:HBG051516 InParanoid:Q9Y3B2
OMA:AGCLTKS OrthoDB:EOG40ZQZP PhylomeDB:Q9Y3B2
EvolutionaryTrace:Q9Y3B2 GenomeRNAi:51013 NextBio:53508
ArrayExpress:Q9Y3B2 Bgee:Q9Y3B2 CleanEx:HS_EXOSC1
Genevestigator:Q9Y3B2 GermOnline:ENSG00000171311 InterPro:IPR025721
Pfam:PF14382 Uniprot:Q9Y3B2
Length = 195
Score = 112 (44.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/101 (30%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>UNIPROTKB|Q5E9E9 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:DAAA02058916 EMBL:BC133440 EMBL:BT020971 IPI:IPI00703481
RefSeq:NP_001015529.1 UniGene:Bt.28578 SMR:Q5E9E9 STRING:Q5E9E9
Ensembl:ENSBTAT00000016879 GeneID:506018 KEGG:bta:506018
InParanoid:Q5E9E9 NextBio:20867414 Uniprot:Q5E9E9
Length = 195
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKTS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>MGI|MGI:1913833 [details] [associations]
symbol:Exosc1 "exosome component 1" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=ISO] InterPro:IPR019495
Pfam:PF10447 PROSITE:PS50126 MGI:MGI:1913833 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0006364
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 CTD:51013
HOVERGEN:HBG051516 OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721
Pfam:PF14382 EMBL:AK002930 EMBL:AK006018 EMBL:BC024423
IPI:IPI00118360 IPI:IPI00283868 RefSeq:NP_001158033.1
RefSeq:NP_079920.1 UniGene:Mm.289086 ProteinModelPortal:Q9DAA6
SMR:Q9DAA6 STRING:Q9DAA6 PhosphoSite:Q9DAA6 PaxDb:Q9DAA6
PRIDE:Q9DAA6 DNASU:66583 Ensembl:ENSMUST00000075280
Ensembl:ENSMUST00000112123 GeneID:66583 KEGG:mmu:66583
UCSC:uc008hmm.2 UCSC:uc008hmn.2 InParanoid:Q9DAA6 NextBio:322064
Bgee:Q9DAA6 CleanEx:MM_EXOSC1 Genevestigator:Q9DAA6
GermOnline:ENSMUSG00000034321 Uniprot:Q9DAA6
Length = 195
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>UNIPROTKB|E2RT56 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AAEX03015445
Ensembl:ENSCAFT00000014417 Uniprot:E2RT56
Length = 207
Score = 110 (43.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 22 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKSS----ENGALPVISVMRETESQL 75
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 76 LPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 116
>WB|WBGene00012966 [details] [associations]
symbol:exos-1 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040010 GO:GO:0040018 GO:GO:0000003
GO:GO:0003723 GO:GO:0000178 KO:K07573 GeneTree:ENSGT00390000015287
InterPro:IPR025721 Pfam:PF14382 EMBL:AL023844 PIR:T26982
RefSeq:NP_499416.1 ProteinModelPortal:Q9XXD2 SMR:Q9XXD2
STRING:Q9XXD2 PaxDb:Q9XXD2 EnsemblMetazoa:Y48A6B.5.1
EnsemblMetazoa:Y48A6B.5.2 GeneID:176532 KEGG:cel:CELE_Y48A6B.5
UCSC:Y48A6B.5 CTD:176532 WormBase:Y48A6B.5 eggNOG:NOG267705
HOGENOM:HOG000021244 InParanoid:Q9XXD2 OMA:RAYYLST NextBio:892972
Uniprot:Q9XXD2
Length = 208
Score = 110 (43.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/107 (30%), Positives = 54/107 (50%)
Query: 10 LVTPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
LV PG+ VL E + GKG Y A N ++AS+ G + S + +EV +
Sbjct: 6 LVAPGDKVLDAIGEYRMGKGLYEA--NRRIFASVAGFVNVYGFRDKSDNLVQVIEVRRSE 63
Query: 69 A---HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+ +P G++V A+V V R A DI+ +G K +++FS ++
Sbjct: 64 DQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALL 110
>UNIPROTKB|F1S8Y4 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 OMA:AGCLTKS InterPro:IPR025721
Pfam:PF14382 EMBL:CU407093 Ensembl:ENSSSCT00000011508
Uniprot:F1S8Y4
Length = 196
Score = 109 (43.4 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/101 (29%), Positives = 47/101 (46%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +H G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT-RH-GYIFSSLAGCLTKSS----ENGALPVISVMRETDSQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>POMBASE|SPCC1840.11 [details] [associations]
symbol:csl4 "exosome subunit Csl4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
PomBase:SPCC1840.11 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000175 PIR:T41179 PIR:T41654
RefSeq:NP_588510.1 ProteinModelPortal:O59821 STRING:O59821
EnsemblFungi:SPCC1840.11.1 GeneID:2539351 KEGG:spo:SPCC1840.11
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 OMA:KIGDCFR
OrthoDB:EOG4CZFRH NextBio:20800516 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
InterPro:IPR022967 SMART:SM00316 Uniprot:O59821
Length = 181
Score = 96 (38.9 bits), Expect = 0.00074, P = 0.00074
Identities = 30/105 (28%), Positives = 50/105 (47%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M LV PG+V+ + A G K + ++ TG+ P +S VE T
Sbjct: 1 MNLVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA- 52
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+P GS+V+ARV+++ R A+ +I V +++F G+I
Sbjct: 53 ----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVI 93
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 141 141 0.00091 102 3 11 22 0.43 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 527 (56 KB)
Total size of DFA: 116 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.81u 0.15s 15.96t Elapsed: 00:00:01
Total cpu time: 15.81u 0.15s 15.96t Elapsed: 00:00:01
Start: Sat May 11 03:53:06 2013 End: Sat May 11 03:53:07 2013