BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032397
(141 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255634132|gb|ACU17429.1| unknown [Glycine max]
Length = 189
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 94/110 (85%)
Query: 4 KEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+E+E V+VTPGEVLG+ ++VKAG+GAY A HN VYASLTG T+ P PDS D RPTVE
Sbjct: 3 EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VTGHKAHGPVP+PGSVVIARVTKVM R ASADIMCVG KSVREKF+GIIR
Sbjct: 63 VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIR 112
>gi|363814479|ref|NP_001242874.1| uncharacterized protein LOC100796154 [Glycine max]
gi|255640712|gb|ACU20640.1| unknown [Glycine max]
Length = 197
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/110 (75%), Positives = 93/110 (84%)
Query: 4 KEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+E+E V+VTPGEVLG+ ++VKAG+GAY A HN VYASLTG T+ P PDS D RPTVE
Sbjct: 3 EEKEAVMVTPGEVLGRTSDVKAGRGAYAALHNNTVYASLTGFRHTVPPAPDSSDLRPTVE 62
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VTGHKAHGPVP+PGSVVIARVTKVM R ASADIMCVG KSVR KF+GIIR
Sbjct: 63 VTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVRGKFTGIIR 112
>gi|357441291|ref|XP_003590923.1| Ammonium transporter [Medicago truncatula]
gi|355479971|gb|AES61174.1| Ammonium transporter [Medicago truncatula]
Length = 1109
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 79/109 (72%), Positives = 89/109 (81%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E E +VTPGEV+GK +VKAG+G Y + HN VYASLTG T+ P DSPDQRP VEV
Sbjct: 2 EAERDMVTPGEVIGKTHDVKAGRGTYTSTHNNTVYASLTGFRHTIPPASDSPDQRPIVEV 61
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
TGHKAHGPVPEPGSVVI RVTKVMT++A ADIMCVG KSVREKF+G+IR
Sbjct: 62 TGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIR 110
>gi|224125764|ref|XP_002319669.1| predicted protein [Populus trichocarpa]
gi|118483759|gb|ABK93772.1| unknown [Populus trichocarpa]
gi|222858045|gb|EEE95592.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 95/113 (84%), Gaps = 4/113 (3%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGL----VYASLTGLLRTLSPPPDSPDQRP 60
+EE + TPGEVLGKATE+KAGKGAY+ + V++SLTGL RTLSP PDSPDQRP
Sbjct: 2 QEEGEMATPGEVLGKATELKAGKGAYIGSYRDTDIQYVFSSLTGLRRTLSPSPDSPDQRP 61
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
TVEVTGHKAHG VPEPGSVVIARVTKVM + ASADIMCVG KSV+EKF+GIIR
Sbjct: 62 TVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCVGPKSVQEKFTGIIR 114
>gi|255562013|ref|XP_002522015.1| conserved hypothetical protein [Ricinus communis]
gi|223538819|gb|EEF40419.1| conserved hypothetical protein [Ricinus communis]
Length = 593
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/114 (74%), Positives = 96/114 (84%), Gaps = 6/114 (5%)
Query: 4 KEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNG----LVYASLTGLLRTLSPPPDSPDQR 59
++EEMV TPGEVLGKA+E+KAGKGAYVA + VY+SL+G LRTL+P PDSPDQR
Sbjct: 397 EKEEMV--TPGEVLGKASELKAGKGAYVAPYRNTDIFYVYSSLSGFLRTLAPTPDSPDQR 454
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
PTVEVTG KA G VPE GSVVIARVTKVM +MASADIMCVG KSVREKF+G+IR
Sbjct: 455 PTVEVTGLKARGAVPEAGSVVIARVTKVMAKMASADIMCVGPKSVREKFTGLIR 508
>gi|224105431|ref|XP_002333818.1| predicted protein [Populus trichocarpa]
gi|222838632|gb|EEE76997.1| predicted protein [Populus trichocarpa]
Length = 119
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 94/112 (83%), Gaps = 4/112 (3%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGL----VYASLTGLLRTLSPPPDSPDQRP 60
+EE + TPGEVLGKATE+KAGKGAY+ + V++SLTGL RTLSP PDSPDQRP
Sbjct: 2 QEEGEMATPGEVLGKATELKAGKGAYIGSYRDTDIQYVFSSLTGLRRTLSPSPDSPDQRP 61
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
TVEVTGHKAHG VPEPGSVVIARVTKVM + ASADIMCVG KSV+EKF+GI+
Sbjct: 62 TVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCVGPKSVQEKFTGIM 113
>gi|225430615|ref|XP_002266663.1| PREDICTED: exosome complex component CSL4 [Vitis vinifera]
gi|296085148|emb|CBI28643.3| unnamed protein product [Vitis vinifera]
Length = 200
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 90/113 (79%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP 60
M +EE LVTPGEVLGK +++KAG+GAY NG VYASLTG + P P S DQRP
Sbjct: 1 MQEREEAEELVTPGEVLGKGSQLKAGRGAYFLPQNGTVYASLTGRRSLIPPSPLSSDQRP 60
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
TVEVTGH AHG +PEPGS+VIARVTKVM RMASADIMCVG KSVREKF+GIIR
Sbjct: 61 TVEVTGHSAHGAIPEPGSIVIARVTKVMARMASADIMCVGPKSVREKFTGIIR 113
>gi|297805862|ref|XP_002870815.1| hypothetical protein ARALYDRAFT_494089 [Arabidopsis lyrata subsp.
lyrata]
gi|297316651|gb|EFH47074.1| hypothetical protein ARALYDRAFT_494089 [Arabidopsis lyrata subsp.
lyrata]
Length = 191
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQR VEVTGHKA
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDTTIYASLTGTRRIVSPLPESLDQRAVVEVTGHKA 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HGP+PEPGSVVIARVTKVM RMA+ DI+CVG+K+VRE F+G+IR
Sbjct: 63 HGPIPEPGSVVIARVTKVMARMAAVDILCVGSKAVRENFAGVIR 106
>gi|9758066|dbj|BAB08645.1| unnamed protein product [Arabidopsis thaliana]
Length = 145
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQR VEVTGHKA
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HGP+PE GSVVIARVTKVMT+MA+ DI+CVG+K+VRE F+G+IR
Sbjct: 63 HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIR 106
>gi|42568189|ref|NP_568559.2| exosome complex component CSL4 [Arabidopsis thaliana]
gi|124301132|gb|ABN04818.1| At5g38890 [Arabidopsis thaliana]
gi|222423301|dbj|BAH19626.1| AT5G38890 [Arabidopsis thaliana]
gi|332006986|gb|AED94369.1| exosome complex component CSL4 [Arabidopsis thaliana]
Length = 191
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQR VEVTGHKA
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HGP+PE GSVVIARVTKVMT+MA+ DI+CVG+K+VRE F+G+IR
Sbjct: 63 HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIR 106
>gi|449453260|ref|XP_004144376.1| PREDICTED: exosome complex component CSL4-like [Cucumis sativus]
gi|449515303|ref|XP_004164689.1| PREDICTED: exosome complex component CSL4-like [Cucumis sativus]
Length = 196
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 85/109 (77%), Gaps = 2/109 (1%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E++ VTPGEVLG ++ K G+GAYV + VYASL+G R + PP DS D R TVEV
Sbjct: 5 EKDTEFVTPGEVLGNFSDFKPGRGAYVT--DNTVYASLSGFRRIIHPPSDSSDLRSTVEV 62
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
TGHKAHG VP PGS+VI RVTKVMT+MASADIMCVG KSV+EKF+GIIR
Sbjct: 63 TGHKAHGAVPAPGSIVIVRVTKVMTKMASADIMCVGPKSVKEKFTGIIR 111
>gi|224030371|gb|ACN34261.1| unknown [Zea mays]
gi|413939467|gb|AFW74018.1| hypothetical protein ZEAMMB73_791647 [Zea mays]
gi|413939468|gb|AFW74019.1| hypothetical protein ZEAMMB73_791647 [Zea mays]
Length = 188
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG + + AG+GAY + V AS+TG R + P P S DQR TVEV GHKA
Sbjct: 14 VVTPGELLGNSLTLAAGRGAYADGRS--VRASVTGRRRIVPPAPGSDDQRSTVEVVGHKA 71
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM RMASADIMCV +K++REKF+G+IR
Sbjct: 72 HGAVPQPGSVVIARVTKVMARMASADIMCVDSKAIREKFTGMIR 115
>gi|226531832|ref|NP_001148354.1| 3-5 exoribonuclease CSL4 [Zea mays]
gi|195618352|gb|ACG31006.1| 3-5 exoribonuclease CSL4 [Zea mays]
gi|223975657|gb|ACN32016.1| unknown [Zea mays]
gi|413939469|gb|AFW74020.1| 3-5 exoribonuclease CSL4 [Zea mays]
Length = 199
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG + + AG+GAY + V AS+TG R + P P S DQR TVEV GHKA
Sbjct: 14 VVTPGELLGNSLTLAAGRGAYADGRS--VRASVTGRRRIVPPAPGSDDQRSTVEVVGHKA 71
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM RMASADIMCV +K++REKF+G+IR
Sbjct: 72 HGAVPQPGSVVIARVTKVMARMASADIMCVDSKAIREKFTGMIR 115
>gi|357159969|ref|XP_003578616.1| PREDICTED: exosome complex component CSL4-like [Brachypodium
distachyon]
Length = 199
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG ++ AG GAY + V AS+TG R + P PDSPD+R TVEV GHKA
Sbjct: 14 VVTPGELLGTSSSFVAGHGAYADGRS--VRASVTGHRRIVPPSPDSPDKRSTVEVVGHKA 71
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM R+ASADIMCV +K+V+EKF+G+IR
Sbjct: 72 HGAVPQPGSVVIARVTKVMARVASADIMCVDSKAVKEKFTGMIR 115
>gi|326522694|dbj|BAJ88393.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 83/105 (79%), Gaps = 2/105 (1%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
V+VTPGE+LG ++ + AG+GAY + V AS+TG R + P P S DQR TVEV GHK
Sbjct: 14 VVVTPGELLGPSSYLAAGRGAYAEGRS--VRASVTGRRRFVPPAPGSSDQRSTVEVVGHK 71
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
AHG VP+PGS+VIARVTKVM RMASADIMCV +K+V+EKF+G+IR
Sbjct: 72 AHGAVPQPGSIVIARVTKVMARMASADIMCVDSKAVKEKFTGMIR 116
>gi|242066968|ref|XP_002454773.1| hypothetical protein SORBIDRAFT_04g037080 [Sorghum bicolor]
gi|241934604|gb|EES07749.1| hypothetical protein SORBIDRAFT_04g037080 [Sorghum bicolor]
Length = 155
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG + + AG+GAY + V AS+TG R + P P S DQR TVEV GHKA
Sbjct: 15 VVTPGELLGNSLTLAAGRGAYADGRS--VRASVTGRRRIVPPAPGSDDQRSTVEVVGHKA 72
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM RMASADIMCV +K+++EKF+G+IR
Sbjct: 73 HGAVPQPGSVVIARVTKVMARMASADIMCVDSKAIKEKFTGMIR 116
>gi|115449601|ref|NP_001048506.1| Os02g0815800 [Oryza sativa Japonica Group]
gi|113538037|dbj|BAF10420.1| Os02g0815800 [Oryza sativa Japonica Group]
Length = 197
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%), Gaps = 3/104 (2%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG ++ + AG GAY V AS+TG R + PPP S DQR TVEV GHKA
Sbjct: 13 VVTPGELLGNSS-LLAGLGAYADGR--CVRASITGHRRLVPPPPGSTDQRSTVEVVGHKA 69
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM RMASADIMCV +K+V+EKF+G+IR
Sbjct: 70 HGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIR 113
>gi|47848174|dbj|BAD22001.1| exoribonuclease-like [Oryza sativa Japonica Group]
gi|218191808|gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group]
gi|222623907|gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group]
Length = 192
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%), Gaps = 3/104 (2%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG ++ + AG GAY V AS+TG R + PPP S DQR TVEV GHKA
Sbjct: 8 VVTPGELLGNSS-LLAGLGAYADGR--CVRASITGHRRLVPPPPGSTDQRSTVEVVGHKA 64
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
HG VP+PGSVVIARVTKVM RMASADIMCV +K+V+EKF+G+IR
Sbjct: 65 HGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIR 108
>gi|294460089|gb|ADE75627.1| unknown [Picea sitchensis]
Length = 193
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 73/103 (70%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAH 70
+TPGE++GK+ + AG G Y+ N +YA GL R + P++ D RPTVEV K H
Sbjct: 7 MTPGEIVGKSYDYIAGPGTYLNPSNNTIYACAVGLKRLIPASPNAGDNRPTVEVVKEKEH 66
Query: 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G VPEPG++V ARVTKVM R+AS +I+CVG ++V+EKF+G +R
Sbjct: 67 GAVPEPGAIVTARVTKVMVRLASVNIICVGMRAVKEKFTGTVR 109
>gi|297819770|ref|XP_002877768.1| hypothetical protein ARALYDRAFT_485422 [Arabidopsis lyrata subsp.
lyrata]
gi|297323606|gb|EFH54027.1| hypothetical protein ARALYDRAFT_485422 [Arabidopsis lyrata subsp.
lyrata]
Length = 203
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 5/94 (5%)
Query: 24 KAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIAR 83
+ GKGAYV + +Y SLTG R +SP P+S DQR VEVTGHKAHGP+PE GSVVIAR
Sbjct: 7 RKGKGAYV--NVITIYGSLTGTRRIVSPLPESLDQRAIVEVTGHKAHGPIPETGSVVIAR 64
Query: 84 VTKVMTRMASADIMCVGAKSVREKFSGIIRFFIF 117
VTKVM RMA+ DI+C+G K+V F+ +I FIF
Sbjct: 65 VTKVMARMAAVDILCIGPKAV---FADLISLFIF 95
>gi|302797873|ref|XP_002980697.1| hypothetical protein SELMODRAFT_178307 [Selaginella moellendorffii]
gi|300151703|gb|EFJ18348.1| hypothetical protein SELMODRAFT_178307 [Selaginella moellendorffii]
Length = 205
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP 60
M +E++ L TPGE+LG A+E AG+G+Y H+G +YASL G+ + S D RP
Sbjct: 1 MAKREDD--LRTPGELLGLASEFNAGRGSYC--HDGKIYASLVGIRHLIEAKQGSDDLRP 56
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
T+E+ K VPE GS V A++TKV RMASADI+CVG ++V+EKF+GI+R
Sbjct: 57 TIEIRREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVR 109
>gi|356574865|ref|XP_003555564.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component CSL4-like
[Glycine max]
Length = 167
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 72/110 (65%), Gaps = 30/110 (27%)
Query: 4 KEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+E+E V++TPGEVLG+ +++K G + R TVE
Sbjct: 3 EEKETVMLTPGEVLGRTSDIKDG------------------------------NTRLTVE 32
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VTGHK+HGPVP+PGSVVIARVTKVM R ASADIMCVG KSVREKF+GIIR
Sbjct: 33 VTGHKSHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIR 82
>gi|302790375|ref|XP_002976955.1| hypothetical protein SELMODRAFT_175887 [Selaginella moellendorffii]
gi|300155433|gb|EFJ22065.1| hypothetical protein SELMODRAFT_175887 [Selaginella moellendorffii]
Length = 197
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP 60
M +E++ L TPGE+LG A+E AG+G+Y H+G +YASL G+ + S D RP
Sbjct: 1 MAKREDD--LRTPGELLGLASEFNAGRGSYC--HDGKIYASLVGIRHLIEAKQGSDDLRP 56
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
T+E+ K VPE GS V A++TKV RMASADI+CVG ++V+EKF+GI+R
Sbjct: 57 TIEIRREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVR 109
>gi|168050507|ref|XP_001777700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670920|gb|EDQ57480.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
V TPGEVLG G G Y G V +S+ GL R + P PD+PDQRP +EV+ K
Sbjct: 6 VFSTPGEVLGSLAVYAPGPGTYA--WGGNVVSSVVGLQRVVPPSPDAPDQRPIIEVSREK 63
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G VP PG+ V A++ KV R A ADI+CVG ++V+EKF G++R
Sbjct: 64 EQGAVPGPGAQVTAKIRKVQPRQAIADILCVGTRAVKEKFRGLVR 108
>gi|413939466|gb|AFW74017.1| hypothetical protein ZEAMMB73_791647 [Zea mays]
Length = 116
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE+LG + + AG+GAY + V AS+TG R + P P S DQR TVEV GHKA
Sbjct: 14 VVTPGELLGNSLTLAAGRGAYADGRS--VRASVTGRRRIVPPAPGSDDQRSTVEVVGHKA 71
Query: 70 HGPVPEPGSVVIARV 84
HG VP+PGSVVIARV
Sbjct: 72 HGAVPQPGSVVIARV 86
>gi|384251760|gb|EIE25237.1| hypothetical protein COCSUDRAFT_52805 [Coccomyxa subellipsoidea
C-169]
Length = 190
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
++V PGE L KA E A G YV + + ASL G+ ++ + + D+RP VEV
Sbjct: 4 LVVCPGERLFKAAEYVASSGTYVKGDH--ICASLVGIPQSFAGSSSAEDKRPVVEVLRSG 61
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VPE G++VIA+V KV R+ASA ++CV + + + FSGIIR
Sbjct: 62 SRAKVPETGNIVIAKVNKVNPRLASASLLCVNTQPLTDSFSGIIR 106
>gi|307110096|gb|EFN58333.1| hypothetical protein CHLNCDRAFT_30168 [Chlorella variabilis]
Length = 192
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E +LVTPGE L E AG G V + + A+L G R L +QRP VEV
Sbjct: 3 ETLLVTPGERLALVAEYDAGSGTCV--KDKFICATLVGSKRVLPAGEGEAEQRPRVEVVR 60
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
VP G V ARV ++ R+A+ DI+CVG K VR+++SG+IR
Sbjct: 61 SGVEPVVPRVGDTVTARVVRINPRLAAVDILCVGPKPVRQRYSGVIRV 108
>gi|328770331|gb|EGF80373.1| hypothetical protein BATDEDRAFT_88821 [Batrachochytrium
dendrobatidis JAM81]
Length = 189
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M V PG+ LG A + A G Y+ +G VYAS+ G + ++P D + +P++ V
Sbjct: 1 MTTVLPGQRLGLAADTNASTGTYI--KDGFVYASVMGN-KHITPSIDPLNTKPSLSVFKD 57
Query: 68 K-AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K A+ VPE GS++I +VT++ R AS +IM + + E F GIIR
Sbjct: 58 KQANSGVPEIGSLIIGKVTRINPRFASVNIMVISSTPCSEVFQGIIR 104
>gi|330800727|ref|XP_003288385.1| hypothetical protein DICPUDRAFT_33962 [Dictyostelium purpureum]
gi|325081567|gb|EGC35078.1| hypothetical protein DICPUDRAFT_33962 [Dictyostelium purpureum]
Length = 157
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP------------- 56
++TPG+ L K +E + +G Y H G +Y+S+ G + + P
Sbjct: 5 VITPGQRLAKDSEYISSEGTYT--HKGYIYSSVLGFQHIIKKNLNKPTSEEINNSNNSNV 62
Query: 57 ---DQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
D R + V K VPE GS+V +V ++ ++AS I+CVG K+++E F+GIIR
Sbjct: 63 NNSDDRDFIVVLKEKEPSVVPEIGSIVTVQVLRINPKLASVAILCVGTKALKETFNGIIR 122
Query: 114 F 114
Sbjct: 123 I 123
>gi|328875935|gb|EGG24299.1| 3'-5' exoribonuclease [Dictyostelium fasciculatum]
Length = 246
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 29/131 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLS------------------- 50
+VTPG+ L K TE + +G YV H G +Y+S+ G T+
Sbjct: 4 IVTPGQKLCKDTEYISSEGTYV--HKGSIYSSVLGFSHTIKRNINTDNNNETTTTSSSGS 61
Query: 51 --------PPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK 102
S D+R + V K G VPE G+VV +V ++ R+AS I+CVG K
Sbjct: 62 SSSIPSEYNNSTSEDKRDYIVVLKEKEPGIVPEIGNVVTVQVLRINPRLASCAILCVGTK 121
Query: 103 SVREKFSGIIR 113
+++E F+G+IR
Sbjct: 122 ALKETFNGVIR 132
>gi|291227929|ref|XP_002733935.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 204
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 14 GEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPV 73
G+ LG+ +G G YV + +Y+SL G + ++ D+ P + VT + H +
Sbjct: 20 GDRLGRCEHYASGNGTYVRQQ--CIYSSLAGFVH----EQENDDKLPILNVTREEQHTVI 73
Query: 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
PE GS+V A+VT + R I+CV +++KF G+IR
Sbjct: 74 PEVGSIVTAKVTNINPRFCKCTILCVEDSPLKDKFRGMIR 113
>gi|26451011|dbj|BAC42612.1| unknown protein [Arabidopsis thaliana]
Length = 86
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%), Gaps = 2/49 (4%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ 58
LVTPG+V+GKATE KAGKGAYV ++ +YASLTG R +SP P+S DQ
Sbjct: 5 LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQ 51
>gi|326436139|gb|EGD81709.1| hypothetical protein PTSG_02420 [Salpingoeca sp. ATCC 50818]
Length = 178
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
VLVTPG L + AG+G Y+ +G +YASL G P DS D +P + +
Sbjct: 16 VLVTPGTRLAPQSTHVAGEGTYL--RDGYIYASLVGQRVETKKPEDSKDTKPVISI---- 69
Query: 69 AHGP------VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
H P VP G+VV +V + R A I+CVGA +++ FSGIIR
Sbjct: 70 -HRPGQIASLVPTVGTVVTCKVISMNPRFAKTKILCVGAVPLQQSFSGIIR 119
>gi|375332113|gb|AFA52596.1| hypothetical protein [Vaucheria litorea]
Length = 191
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAH 70
V PG+ +G+ E +G G YV + +Y+SL G ++ + + P+ P + V G KA
Sbjct: 5 VCPGDRIGRCDEYTSGNGTYVRGPH--IYSSLVGRIQKI----EVPENLPVLTVKGKKAV 58
Query: 71 -GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G + E G VV+ RVT+V +AS DI+C G +RE GIIR
Sbjct: 59 VGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIR 102
>gi|281211015|gb|EFA85181.1| 3'-5' exoribonuclease [Polysphondylium pallidum PN500]
Length = 238
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLL----RTLSPPPDSPD--- 57
+ + +VTPG+ L + E A +G Y K G +Y+S+ G ++ +S D
Sbjct: 2 DNNITIVTPGQKLSRDNEYIASEGTYYYK--GSIYSSVLGFRHFVKNNITSKEESDDIVD 59
Query: 58 -----------QRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE 106
+ + V K G VPE GSVV +V ++ R+AS I+CVG K+++E
Sbjct: 60 NSNINNNNNNSNKDYIVVLKEKDPGVVPEIGSVVTVQVLRINPRLASVAILCVGTKALKE 119
Query: 107 KFSGIIR 113
F+GIIR
Sbjct: 120 TFNGIIR 126
>gi|159485846|ref|XP_001700955.1| hypothetical protein CHLREDRAFT_187429 [Chlamydomonas reinhardtii]
gi|158281454|gb|EDP07209.1| predicted protein [Chlamydomonas reinhardtii]
Length = 198
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 14 GEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPV 73
G+ LG AG+G +V +G V AS+ G R L P D P ++PT+ V V
Sbjct: 13 GDRLGTTDTYAAGEGVFV--RDGFVIASVVGFQR-LEPSAD-PGEKPTIHVASGDTRPLV 68
Query: 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
P+PG +V ++++V A A IMCVG +++ +F G+IR
Sbjct: 69 PKPGDIVTVKISRVAQTAAHALIMCVGRQALGTEFKGVIR 108
>gi|66809117|ref|XP_638281.1| hypothetical protein DDB_G0285377 [Dictyostelium discoideum AX4]
gi|60466712|gb|EAL64763.1| hypothetical protein DDB_G0285377 [Dictyostelium discoideum AX4]
Length = 156
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ----------- 58
++TPG+ L K ++ + +G YV H G +Y+S+ G + D+ ++
Sbjct: 9 IITPGQRLCKESDFISSEGTYV--HKGYIYSSVLGFKHVIKRNIDTTNENNVNNSNNSNE 66
Query: 59 ----RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
+ + V K VPE GS+V +V ++ ++AS I+CVG K+++E F+GIIR
Sbjct: 67 IENNKDYIVVLKEKEPSVVPEIGSIVTVQVLRINPKLASVAILCVGTKALKETFNGIIRI 126
>gi|384501277|gb|EIE91768.1| hypothetical protein RO3G_16479 [Rhizopus delemar RA 99-880]
Length = 189
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAH 70
VTPG+ LG A + G G Y + +GL+YAS+ G +Q PT+ V+ K
Sbjct: 8 VTPGQRLGYAADYIQGPGTY--ERDGLLYASVVGHKYIDQ---SKNEQLPTIRVSKEKEQ 62
Query: 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VPE GSV+ +V +V A+ IM VG +E F G+IR
Sbjct: 63 SAVPEVGSVITGKVIRVAPHQATIAIMVVGETPCKEDFMGVIR 105
>gi|260828057|ref|XP_002608980.1| hypothetical protein BRAFLDRAFT_287100 [Branchiostoma floridae]
gi|229294334|gb|EEN64990.1| hypothetical protein BRAFLDRAFT_287100 [Branchiostoma floridae]
Length = 190
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
+ TPGE L + +AG G YV H+G +Y+ L G + + VEV
Sbjct: 3 FLFYTPGERLFSTADCEAGPGTYV--HHGYIYSCLAGYMHKRKT---EGKELSIVEVIRQ 57
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K VP GS+V A+VT V RM I CV ++RE F G+IR
Sbjct: 58 KEDA-VPRIGSIVTAKVTSVSGRMCKCAITCVERTTLREPFRGLIR 102
>gi|156058488|ref|XP_001595167.1| hypothetical protein SS1G_03256 [Sclerotinia sclerotiorum 1980]
gi|154701043|gb|EDO00782.1| hypothetical protein SS1G_03256 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 211
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 21/123 (17%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRPT------ 61
++ PG++LG ++E G G ++ H+ +YAS+ G ++T++PP P P +R T
Sbjct: 8 LVAVPGQLLGSSSEYLPGPGTHI--HSSNLYASILGPIKTVAPPKPSYPQKRATKITPAA 65
Query: 62 -----------VEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSG 110
VTG KA +PE S V+ RVT++ R A+ I+ VG + ++ G
Sbjct: 66 LVPLSTVSIERATVTGDKAEI-IPEVNSTVLCRVTRITPRQATVAILVVGETVLEGEWQG 124
Query: 111 IIR 113
+IR
Sbjct: 125 LIR 127
>gi|348673547|gb|EGZ13366.1| hypothetical protein PHYSODRAFT_510564 [Phytophthora sojae]
Length = 168
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 13 PGEVLGKAT-EVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHG 71
PG+ L A ++KAG GAYV +G +YAS+ G R S D A
Sbjct: 10 PGQRLAAADGKLKAGSGAYV--RDGAIYASICGKWRI------SQDVVEVSRAGKTVASA 61
Query: 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
V G VVI RV K+M+R DI+CVG ++E F G IR
Sbjct: 62 QVLRLGDVVICRVAKIMSRQVMVDILCVGETVLKEAFPGTIRL 104
>gi|299470812|emb|CBN78635.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 190
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK- 68
+V PG+ LG+A+E +AG G YV +YAS+ G L D +P + V+ K
Sbjct: 4 VVCPGKRLGRASEYRAGPGTYV--RGTYIYASVVGP--KLEQAAADEDGKPYLIVSQPKR 59
Query: 69 --AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
A V + G V+ RVT++ TR A +I+CVG +RE GI+R
Sbjct: 60 ARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVR 106
>gi|167537131|ref|XP_001750235.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771225|gb|EDQ84894.1| predicted protein [Monosiga brevicollis MX1]
Length = 204
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE-----V 64
+V PG L KA + AG+G YV +H+ V ASL G + +P P + V+ V
Sbjct: 14 VVLPGTRLAKADDYAAGEGTYV-RHD-RVCASLRGTVVIHTPEPSEDEDAAKVKAVLRVV 71
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
G +P GS V +VT + T+ A I+CV K V +FSGIIR
Sbjct: 72 RGGAVPSLMPSVGSTVTCKVTSINTQQARVVILCVDGKPVATRFSGIIRI 121
>gi|154310662|ref|XP_001554662.1| hypothetical protein BC1G_06805 [Botryotinia fuckeliana B05.10]
gi|347839438|emb|CCD54010.1| similar to 3'-5' exoribonuclease CSL4 [Botryotinia fuckeliana]
Length = 209
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 21/123 (17%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRPT------ 61
++ PG++LG ++E G G ++ H+ +YAS+ G ++T++PP P P +R T
Sbjct: 6 LVAVPGQLLGSSSEYLPGPGTHI--HSSNLYASILGPIKTVAPPKPSYPQKRATKITPAA 63
Query: 62 -----------VEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSG 110
+TG KA +PE S V+ RVT++ R A+ I+ VG + ++ G
Sbjct: 64 PVPLSTISIERATLTGDKAEI-LPEVNSTVLCRVTRITPRQATVAILVVGETVLEGEWQG 122
Query: 111 IIR 113
+IR
Sbjct: 123 LIR 125
>gi|332018459|gb|EGI59049.1| 3'-5' exoribonuclease CSL4-like protein [Acromyrmex echinatior]
Length = 200
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
++EE+V+ PG+ L A + AG G Y + G +Y+ L G+++ ++ D+ TV
Sbjct: 3 EQEELVICVPGQRLCVADKSNVAGAGTY--EQQGYIYSKLAGIVKLVTD-----DKTRTV 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
EV VP PG +V A VT V R I CVG + + GI+R
Sbjct: 56 EVHSITEQSIVPAPGDIVTAIVTVVNQRFCKCSIKCVGDIILTRPYRGILR 106
>gi|303277897|ref|XP_003058242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460899|gb|EEH58193.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 196
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 11 VTPGEVLGKATEVKAGKGAYV-AKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV----T 65
V PGE L A E G G YV KH V A++ G R + D+ D+RPT+EV T
Sbjct: 7 VCPGERLRFAEEFLPGPGTYVRDKH---VLAAVVGDARVVPAADDAEDRRPTIEVVRRGT 63
Query: 66 GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G V A+VT+ ++A+ +I+CV + + F+GI+R
Sbjct: 64 ARVGGLLLPQIGDEVFAKVTRTNPKLANVEIVCVNGLACADPFNGIVR 111
>gi|255071805|ref|XP_002499577.1| predicted protein [Micromonas sp. RCC299]
gi|226514839|gb|ACO60835.1| predicted protein [Micromonas sp. RCC299]
Length = 202
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV------ 64
V PGE L A EV++G G YV + V A++ G RT D+ D+RP VEV
Sbjct: 5 VLPGEPLRHADEVRSGPGTYVRGKS--VVAAVMGHARTTPAADDADDKRPLVEVIKGPVV 62
Query: 65 ----TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREK--FSGIIR 113
TG +PE G V ARV ++ R +I+ V K+V + F GI+R
Sbjct: 63 TGDATGRGGGTLLPEVGDEVFARVLRINPRQVWCEIVAVNGKAVNDASGFQGIVR 117
>gi|198422997|ref|XP_002122042.1| PREDICTED: similar to exosome component 1 [Ciona intestinalis]
Length = 209
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVT 65
EE + PGE LG + + + GKG YV +G V+AS+ G ++ S D P + V
Sbjct: 2 EENSICIPGERLGSSEQYQPGKGTYV--RHGFVFASIAGSIKKES---DKSGNLPLIHVQ 56
Query: 66 GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G +VI ++T++ + A I+ V + F GIIR
Sbjct: 57 SIHTKQHIPQIGGIVICKMTQLTSAFAKCKIISVQGSNHTAAFRGIIR 104
>gi|158297117|ref|XP_317396.3| AGAP008063-PA [Anopheles gambiae str. PEST]
gi|157015041|gb|EAA12694.3| AGAP008063-PA [Anopheles gambiae str. PEST]
Length = 214
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 5 EEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
E++ ++ PG++L A+E AG+G Y + G ++A+L G+++ ++ +
Sbjct: 9 EDQTLICVPGQILCAASEFTVAGQGTY--EKLGYIHATLAGIVQM-----KKREKNTFIS 61
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V VP G +V AR+T V RMA I+C+G ++ GIIR
Sbjct: 62 VVSFGGGATVPVIGDIVTARITAVQNRMARCRILCIGKTALNRTLRGIIR 111
>gi|391327251|ref|XP_003738118.1| PREDICTED: exosome complex component CSL4-like isoform 2
[Metaseiulus occidentalis]
Length = 198
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 9 VLVTPGEVLGKATEVK--AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
++ PG+ + E K +G G Y G +YASLTG+L+ ++ VE+
Sbjct: 7 LMCVPGKRICALAEDKFISGPGTY--SQQGYIYASLTGVLQITK---QDDGKKSLVEIRR 61
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP PGSVV +VT + R A I+C+ ++E F G+IR
Sbjct: 62 PMGRLAVPTPGSVVTCKVTSINQRYAKVSILCIEETELKEPFRGVIR 108
>gi|391327249|ref|XP_003738117.1| PREDICTED: exosome complex component CSL4-like isoform 1
[Metaseiulus occidentalis]
Length = 195
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 10 LVTPGEVLGKATEVK--AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
+ PG+ + E K +G G Y G +YASLTG+L+ ++ VE+
Sbjct: 5 MCVPGKRICALAEDKFISGPGTY--SQQGYIYASLTGVLQITK---QDDGKKSLVEIRRP 59
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP PGSVV +VT + R A I+C+ ++E F G+IR
Sbjct: 60 MGRLAVPTPGSVVTCKVTSINQRYAKVSILCIEETELKEPFRGVIR 105
>gi|66525811|ref|XP_624453.1| PREDICTED: 3'-5' exoribonuclease CSL4 homolog [Apis mellifera]
Length = 198
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
K +++++ PG+ L + +V AG G Y + G +Y+ L GL++ + + TV
Sbjct: 3 KNKDIIVCVPGQRLCISDKVNIAGPGTY--EQQGYIYSKLAGLVKLVEK-----ENTRTV 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
EV G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 56 EVHGITEQSIVPAPGDIVTAMVTIVNQRFCKCSIKCIGDIVLTRPYRGILR 106
>gi|380024377|ref|XP_003695976.1| PREDICTED: exosome complex component CSL4-like [Apis florea]
Length = 197
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
K +++++ PG+ L + +V AG G Y + G +Y+ L GL++ + + T+
Sbjct: 3 KNKDIIVCVPGQRLCISDKVNIAGPGTY--EQQGYIYSKLAGLVKLVEK-----ENTRTI 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
EV G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 56 EVHGITEQSIVPAPGDIVTAMVTIVNQRFCKCSIKCIGDIVLTRPYRGILR 106
>gi|196009890|ref|XP_002114810.1| hypothetical protein TRIADDRAFT_50612 [Trichoplax adhaerens]
gi|190582872|gb|EDV22944.1| hypothetical protein TRIADDRAFT_50612 [Trichoplax adhaerens]
Length = 194
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAH 70
V PG+ LG + AG G YV + + +YASL G +S Q P +++
Sbjct: 9 VIPGQRLGSIDQFSAGLGTYVRQRH--IYASLVGYKDIIS----QAGQLPKIQIKTGNVS 62
Query: 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P G VV A+V V R I+C+G ++E F G IR
Sbjct: 63 CNLPTIGKVVTAKVLNVNPRFCRVLIICIGTTPLKEPFKGTIR 105
>gi|313221861|emb|CBY38928.1| unnamed protein product [Oikopleura dioica]
gi|313236825|emb|CBY12077.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
V PGE LG E +AG+G YV K +YAS G ++ +++ +EV K
Sbjct: 6 VNCVPGERLGSTDECEAGRGTYVRKS--FIYASRIGKVKNTV----DENKKIVIEVI-RK 58
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
P+P+ GS+V A++ +V R A I V + F G+IR
Sbjct: 59 DEPPLPQVGSIVTAKIVQVTQRQCRATIYAVDGIATSSPFKGLIR 103
>gi|221127674|ref|XP_002162040.1| PREDICTED: exosome complex component CSL4-like [Hydra
magnipapillata]
Length = 193
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
L PG+ LG ++ AG G Y+ NG +Y+ L G + D + +EV +K
Sbjct: 8 LAVPGDRLGSVSDYIAGSGTYI--RNGFIYSKLCGNVVAKKEIED----KLVLEVIRNKL 61
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VPE S+ +V TR+ I+ V S+ KF GIIR
Sbjct: 62 QNIVPEVNSIATCKVISNNTRLCKVFILSVNGVSLHGKFIGIIR 105
>gi|300121793|emb|CBK22367.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E V PG+ +G E + G G + +NG++Y+S+ G T P + + P + V
Sbjct: 3 ENHEFRVVPGDRIGSCEEFECGDGVFA--NNGIIYSSIVG---TRKQKPGT--KLPIIYV 55
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K +P G +V+ARVT V MAS I+CV +V F G IR
Sbjct: 56 EPAK-QVIIPNVGDIVLARVTYVTAVMASLHILCVNGVAVTSYFRGTIR 103
>gi|346470709|gb|AEO35199.1| hypothetical protein [Amblyomma maculatum]
Length = 193
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 26 GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85
G G YV NG +YASL GL++ L D + VEV + VP PG++V +VT
Sbjct: 26 GDGTYV--QNGYIYASLAGLIKILR----QKDMKTLVEVQRCTSQN-VPAPGNIVTVKVT 78
Query: 86 KVMTRMASADIMCVGAKSVREKFSGIIR 113
V R I+ + + E F GIIR
Sbjct: 79 SVTPRFCKCSILAIEECELWEPFRGIIR 106
>gi|383851800|ref|XP_003701419.1| PREDICTED: exosome complex component CSL4-like [Megachile
rotundata]
Length = 212
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 5 EEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
E+++++ PG+ L + +V AG G Y + G +Y+ L G+++ + + T+E
Sbjct: 18 EKDVIVCVPGQRLCVSDKVNIAGTGTY--EQQGYIYSKLAGVVKLVQE-----ENTRTIE 70
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 71 VHGITEQSIVPAPGDIVTAMVTVVNQRFCKCSIKCIGDIVLTRPYRGILR 120
>gi|322789867|gb|EFZ15014.1| hypothetical protein SINV_14459 [Solenopsis invicta]
Length = 217
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
++ ++EE ++ PG+ L + + AG G Y + G +Y+ L G+++ ++ D+
Sbjct: 13 IMTEKEEFIICVPGQRLCVSDKSNVAGPGTY--EQQGYIYSKLAGIVKLVTN-----DKI 65
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VEV VP PG +V A VT V R I CVG + + GI+R
Sbjct: 66 RKVEVHSMTEQSTVPAPGDIVTAMVTVVNQRFCKCSIKCVGDIVLTRPYRGILR 119
>gi|171693975|ref|XP_001911912.1| hypothetical protein [Podospora anserina S mat+]
gi|170946936|emb|CAP73740.1| unnamed protein product [Podospora anserina S mat+]
Length = 218
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSP--------------PPDS 55
L PG++LG + + G G ++ HN V+ASL G + P P +
Sbjct: 8 LAIPGQLLGSTSRYQPGPGTHIHNHN--VHASLMGTVHIAQPAKAPGPVKRLTKITPAPA 65
Query: 56 PDQRPTVEVT-----------GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSV 104
P + PT+ VT G K +PE G+VV+ RV ++ R A I+ G +
Sbjct: 66 PAELPTISVTVPTRSAGSDHAGQKKREVLPEVGNVVLCRVIRITPRQAVVSILVCGDTVL 125
Query: 105 REKFSGIIRF 114
++ G+IR
Sbjct: 126 DAEWQGLIRV 135
>gi|156538385|ref|XP_001605472.1| PREDICTED: exosome complex component CSL4-like [Nasonia
vitripennis]
Length = 198
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 5 EEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+++ ++ PG+ L A + AG+G Y + G +Y+ G+++ + D TVE
Sbjct: 3 DKDPIICIPGQRLCPADKTNIAGQGTY--EQLGYIYSKFAGIVKVIKN-----DNTCTVE 55
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 56 VHGMTDQSIVPAPGDIVTAMVTIVNQRFCKCTIKCIGDIVLSRPYRGIVR 105
>gi|350424034|ref|XP_003493668.1| PREDICTED: exosome complex component CSL4-like [Bombus impatiens]
Length = 198
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
K++++++ PG+ L + + AG G Y + G +Y+ L G+++ + + T+
Sbjct: 3 KDKDIIVCVPGQRLCISDKFNIAGPGTY--EQQGYIYSKLVGVVKLIQK-----ENTRTI 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
EV G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 56 EVHGITEQSIVPAPGDIVTAMVTIVNQRFCKCSIKCIGDIVLTRPYRGILR 106
>gi|301093486|ref|XP_002997589.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110552|gb|EEY68604.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 168
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 10 LVTPGEVLGKA-TEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+ PG+ L +++KAG G YV + +++AS+ G R + VEVT
Sbjct: 7 IAVPGQHLAAVDSKLKAGTGTYV--RDNVIFASIYGKWRV---------SQDVVEVTRAN 55
Query: 69 ---AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
A V G +VI RV K+ +R DI+CVG ++E F G IR
Sbjct: 56 KTVASAQVLRLGDIVICRVVKITSRQVMVDILCVGETVLKEVFPGTIRL 104
>gi|406866517|gb|EKD19557.1| exosomal core protein CSL4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 214
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQR----- 59
+ + PG+VLG +E G G +V HN +YAS+ G + +T+ P P P +R
Sbjct: 3 QSTSIAIPGQVLGLTSEYLPGPGVHV--HNSTLYASILGPVSKTVPPKPAGPQKRLTKIT 60
Query: 60 -------PTVEV------TGHKAHGP---VPEPGSVVIARVTKVMTRMASADIMCVGAKS 103
PT+ + G G +PE S V+ RVT++ R A+ I+ VG
Sbjct: 61 PAAPVALPTLSIERNFTTAGESGTGKKEILPEVNSTVLCRVTRIAPRQATVAILVVGETV 120
Query: 104 VREKFSGIIR 113
+ ++ GIIR
Sbjct: 121 LDGEWQGIIR 130
>gi|322693070|gb|EFY84945.1| exosomal core protein CSL4 [Metarhizium acridum CQMa 102]
Length = 246
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 16/118 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSP--PP-----------DSP 56
+ PG +LG A++ G G ++ H G V +SL G +R +P PP +P
Sbjct: 47 VAVPGNILGPASKYNPGPGTHI--HQGNVVSSLLGRVRVTAPAKPPGPAKRLNKITAPAP 104
Query: 57 DQRPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
++ PT+ V H + +P+ +VV+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 105 EELPTLSVARHGRKREILPDVNNVVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIR 162
>gi|307203861|gb|EFN82797.1| 3'-5' exoribonuclease CSL4-like protein [Harpegnathos saltator]
Length = 197
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
+ EE+++ PG+ L ++ AG G Y + G +Y+ L G+++ ++ D+ +
Sbjct: 3 ENEELIICVPGQRLCVCDKINIAGPGTY--EQQGYIYSKLAGIVKL-----ETNDKTRII 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+V G +P PG +V A V V R I CVG + + GI+R
Sbjct: 56 QVHGITEQSIIPTPGDIVTAMVILVNQRFCKCSIKCVGDIVLTRPYRGILR 106
>gi|340726414|ref|XP_003401553.1| PREDICTED: exosome complex component CSL4-like [Bombus terrestris]
Length = 198
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 4 KEEEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
K++++++ PG+ L + + AG G Y + G +Y+ L G+++ + + T+
Sbjct: 3 KDKDIIVCVPGQRLCVSDKFNIAGPGTY--EQQGYIYSKLVGVVKLIQK-----ENIRTI 55
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
EV G VP PG +V A VT V R I C+G + + GI+R
Sbjct: 56 EVHGITEQSIVPAPGDIVTAMVTIVNQRFCKCSIKCIGDIVLTRPYRGILR 106
>gi|156407009|ref|XP_001641337.1| predicted protein [Nematostella vectensis]
gi|156228475|gb|EDO49274.1| predicted protein [Nematostella vectensis]
Length = 188
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E + PGE LG A + AG G Y ++H G +Y+ L G R + D + + +
Sbjct: 2 EASIAVPGERLGSAEQYSAGNGTY-SRH-GHIYSCLAGY-RHVEKDGD----KSVMSIVR 54
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VP+ GS+V +VT V R A I+ V + +++E F G+IR
Sbjct: 55 EEEKDVVPKIGSIVTCKVTSVNPRFCKAAILGVESTALKETFRGMIR 101
>gi|405976441|gb|EKC40947.1| 3'-5' exoribonuclease CSL4-like protein, partial [Crassostrea
gigas]
Length = 193
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 23 VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIA 82
K G G Y NG +Y+SL G L T + D + +EV + VP ++V
Sbjct: 16 CKRGNGTY--SRNGYIYSSLAGYLHT----SEDEDGKSLIEVKTQEEQNVVPSVDAIVTT 69
Query: 83 RVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
R+T V R I+ VG +RE F G IR
Sbjct: 70 RITNVNPRFCKCLILSVGKIPLREPFRGQIR 100
>gi|126272914|ref|XP_001366739.1| PREDICTED: exosome complex component CSL4-like [Monodelphis
domestica]
Length = 195
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL+G L S + P V VT
Sbjct: 10 PGERLCNVEEASPGSGTYT--RHGYIFSSLSGCLVKTS----DNGELPVVSVTRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|427782871|gb|JAA56887.1| Putative exosomal 3'-5' exoribonuclease complex subunit ski4 csl4
[Rhipicephalus pulchellus]
Length = 186
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 13 PGEVL-GKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA-H 70
PG+ L G G YV NG VY+SL GL++ L D++ VEV H+
Sbjct: 5 PGQRLCASGDRFLGGDGTYV--QNGYVYSSLAGLIKILR----QKDKKTLVEV--HRCTR 56
Query: 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP PG++V ++T V R I+ + + E F GIIR
Sbjct: 57 QNVPAPGNIVTVKITGVTHRFCKCSIIAIEDCELCEPFRGIIR 99
>gi|302845465|ref|XP_002954271.1| hypothetical protein VOLCADRAFT_76178 [Volvox carteri f.
nagariensis]
gi|300260476|gb|EFJ44695.1| hypothetical protein VOLCADRAFT_76178 [Volvox carteri f.
nagariensis]
Length = 201
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 11 VTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAH 70
V G+ LG +AG+G YV +G ++A + GL P +P + V
Sbjct: 11 VCAGDRLGTTDLYEAGEGVYV--RDGFLFAGIVGLQHIEQPA--GRGAKPVLGVVPRGIQ 66
Query: 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP+PG +V ++++V A A ++CVG +++ +F G+IR
Sbjct: 67 PLVPKPGDLVTVKISRVAQTAAMALVLCVGRQALSTEFKGVIR 109
>gi|302416711|ref|XP_003006187.1| 3'-5' exoribonuclease CSL4 [Verticillium albo-atrum VaMs.102]
gi|261355603|gb|EEY18031.1| 3'-5' exoribonuclease CSL4 [Verticillium albo-atrum VaMs.102]
Length = 211
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPP---------------DSPD 57
PG LG A+ ++G G ++ H G++ +SL G + +P +SP
Sbjct: 12 PGTALGPASRYRSGAGTHI--HEGIIVSSLLGRVTVDTPASANGPAKRLTRIAGVLNSPA 69
Query: 58 QRPTVEVTGH--KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
R T+ V+ H K +P+ ++V+ RV ++M R A I VG ++ ++ G+IR
Sbjct: 70 DRATISVSRHGGKKREALPDVSNIVLCRVLRLMPRQAIVSIQQVGDTVLQTEWQGVIR 127
>gi|321467474|gb|EFX78464.1| hypothetical protein DAPPUDRAFT_305166 [Daphnia pulex]
Length = 205
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 1 MVVKEEEMVLV-TPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ 58
M KE + L+ TPG+ + + G G Y G + + L G+++ S D+
Sbjct: 1 MTNKESDKCLICTPGQRICLSDNQYIGGAGTYT--RQGYITSCLAGVVKVTS----QHDK 54
Query: 59 RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
R +EV K VP G VV ARVT++ R A I+CV + E F G +R
Sbjct: 55 RILIEVRSGKEQTVVPSAGDVVTARVTQINPRWARCAILCVKDIVLAEPFRGQLR 109
>gi|224495967|ref|NP_001139039.1| 3'-5' exoribonuclease CSL4 homolog [Danio rerio]
Length = 194
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQRPTVEVTG 66
M L PGE L + G G Y+ +G ++ASL G +LR + ++ P + V
Sbjct: 4 MKLCVPGERLCSTEDCIPGTGTYL--RHGYIFASLAGYVLRK-----NEGEELPVISVVR 56
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + R A I+ VG+ ++++F G IR
Sbjct: 57 ETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIR 103
>gi|346974230|gb|EGY17682.1| 3'-5' exoribonuclease CSL4 [Verticillium dahliae VdLs.17]
Length = 306
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPP---------------DSPD 57
PG LG A+ ++G G ++ H G+V +SL G + +P +SP
Sbjct: 12 PGTALGPASRYRSGAGTHI--HEGIVVSSLLGRVTVDTPASANGPAKRLTRIAGVLNSPA 69
Query: 58 QRPTVEVTGH--KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
R T+ V+ H K +P+ ++V+ RV ++M R A I VG ++ ++ G+IR
Sbjct: 70 DRATISVSRHGGKKREALPDVSNIVLCRVLRLMPRQAIVSIQQVGDTVLQTEWQGVIR 127
>gi|307187351|gb|EFN72479.1| 3'-5' exoribonuclease CSL4-like protein [Camponotus floridanus]
Length = 233
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 25 AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84
AG G Y + G +Y+ L G+++ ++ + Q T+EV G VP PG +V A V
Sbjct: 56 AGPGTY--EQQGYIYSKLAGIVKLIT----NEKQTRTIEVQGITEQSIVPAPGDIVTAIV 109
Query: 85 TKVMTRMASADIMCVGAKSVREKFSGIIR 113
T V R I CVG + + GI+R
Sbjct: 110 TLVNQRFCKCSIKCVGDIVLTRPYRGILR 138
>gi|348536789|ref|XP_003455878.1| PREDICTED: exosome complex component CSL4-like [Oreochromis
niloticus]
Length = 194
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQRPTVEVTG 66
M L PG+ L + + G G Y+ +G +Y+SL G +LR + ++ P + V
Sbjct: 4 MKLCVPGDKLCSSEDCIPGTGVYL--RHGYIYSSLAGYVLRK-----NEGEELPVISVVR 56
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + R A I+ VG+ ++++F G IR
Sbjct: 57 ETETQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIR 103
>gi|195578461|ref|XP_002079084.1| GD22191 [Drosophila simulans]
gi|194191093|gb|EDX04669.1| GD22191 [Drosophila simulans]
Length = 204
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L ++ + + G G Y + NG VYAS +G++ DS D
Sbjct: 1 MSEQQDETVVCLPGERLCRSEDSIVLGIGTY--EQNGYVYASKSGIVNI----EDSGDNC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + A I CV + + G++R
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 108
>gi|195340077|ref|XP_002036643.1| GM11135 [Drosophila sechellia]
gi|194130523|gb|EDW52566.1| GM11135 [Drosophila sechellia]
Length = 204
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L ++ + + G G Y + NG VYAS +G++ DS D
Sbjct: 1 MSEQQDENVVCLPGERLCRSEDSIVLGIGTY--EQNGYVYASKSGIVNI----EDSGDNC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + A I CV + + G++R
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 108
>gi|401405869|ref|XP_003882384.1| 3'-5' exoribonuclease CSL4, related [Neospora caninum Liverpool]
gi|325116799|emb|CBZ52352.1| 3'-5' exoribonuclease CSL4, related [Neospora caninum Liverpool]
Length = 271
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 12 TPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE-------- 63
TPGE LG +E G+G YV + +YA++ GL P P P
Sbjct: 72 TPGERLGSTSEFAPGRGTYV--KDDFIYAAIVGLEHVGPPSPRPPTSAEGTREESKAAGL 129
Query: 64 -----VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V+ K +P G V+A+VTK+ I+ V +++ E F G IR
Sbjct: 130 PVLSVVSSAKCAAVLPTTGCFVLAQVTKISHHRVDCSILAVDGQTLAEPFRGFIR 184
>gi|402082259|gb|EJT77404.1| 3'-5' exoribonuclease CSL4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 219
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 22/120 (18%)
Query: 14 GEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRP------------ 60
G++LG AT+ +AG G +V H +YASL G + PP P P +RP
Sbjct: 19 GQLLGPATKYRAGPGTHV--HESNLYASLLGAIHVSQPPKPAGPAKRPNRIVAAVAPPSS 76
Query: 61 -------TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ E ++ +P+ G++V+ RVT++ A I+ +G + ++ G+IR
Sbjct: 77 SLPVISVSREPQQRRSAKVLPDVGNLVLCRVTRISYAQAIVSILAIGDAVLDAEWQGVIR 136
>gi|312380167|gb|EFR26245.1| hypothetical protein AND_07831 [Anopheles darlingi]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 6 EEMVLVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E+ ++ PG+VL +E A +G Y + G ++A+L G+++ ++ + V
Sbjct: 7 EQTLICVPGQVLCAISEFTVASEGTY--EKLGYIHAALAGIVKL-----KKREKNTFISV 59
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP G +V R+T V RMA I+C+G ++ + GIIR
Sbjct: 60 ISFGGGSTVPVIGDIVTTRITAVHHRMAKCRILCIGKTALNRPYRGIIR 108
>gi|224052677|ref|XP_002194864.1| PREDICTED: exosome complex component CSL4 [Taeniopygia guttata]
Length = 195
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 14 GEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPV 73
GE L E AG G Y +G +++SL G L + ++ P V V +
Sbjct: 11 GERLCSTEEATAGSGTYT--RHGFIFSSLAGCLER----KNEDNELPVVSVVRDSKSQLL 64
Query: 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
P G+VV +V + +R A I+ VG+ ++ F G IR
Sbjct: 65 PNVGAVVTCKVCSINSRFAKVHILYVGSTPLKSTFRGTIR 104
>gi|24583644|ref|NP_609492.1| Csl4 [Drosophila melanogaster]
gi|7297825|gb|AAF53074.1| Csl4 [Drosophila melanogaster]
gi|20152101|gb|AAM11410.1| RE36848p [Drosophila melanogaster]
gi|220948428|gb|ACL86757.1| Csl4-PA [synthetic construct]
gi|220957608|gb|ACL91347.1| Csl4-PA [synthetic construct]
Length = 204
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L + + + G G Y + NG +YAS +G++ DS D+
Sbjct: 1 MSEQQDETVVCLPGERLCRTEDSIVLGIGTY--EQNGYIYASKSGIVNI----EDSGDKC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + A I CV + + G++R
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 108
>gi|413939465|gb|AFW74016.1| hypothetical protein ZEAMMB73_791647 [Zea mays]
Length = 99
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 24/26 (92%)
Query: 88 MTRMASADIMCVGAKSVREKFSGIIR 113
M RMASADIMCV +K++REKF+G+IR
Sbjct: 1 MARMASADIMCVDSKAIREKFTGMIR 26
>gi|452843739|gb|EME45674.1| hypothetical protein DOTSEDRAFT_128511 [Dothistroma septosporum
NZE10]
Length = 190
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR-PTVEVTGHKAHG 71
PG+VLG T G+G ++ HN + AS+ G + LS P S + PTV +T
Sbjct: 7 PGQVLGPTTSNDLGEGTHI--HNTQLCASIPGQI--LSQPSTSKSSKLPTVSIT-RTTGN 61
Query: 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKS---VREKFSGIIR 113
+PE G+VV+ ++T+ + A+ I+ +G+ R+ F +IR
Sbjct: 62 LLPEVGTVVLGKITRTGPKQANISILAIGSGGEHVCRDPFPALIR 106
>gi|320167986|gb|EFW44885.1| hypothetical protein CAOG_02891 [Capsaspora owczarzaki ATCC 30864]
Length = 231
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
H A+ P+P G+VV A VT + +R A +I+CVG+ +RE F G+IR
Sbjct: 102 HDAN-PIPAIGNVVTATVTSITSRFAKVNILCVGSSPLREPFHGMIR 147
>gi|432847858|ref|XP_004066185.1| PREDICTED: exosome complex component CSL4-like [Oryzias latipes]
Length = 195
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
L PG+ L + G G Y+ +G +Y+SL G + + +Q P + V
Sbjct: 6 LCVPGDKLCSVEDCILGTGVYL--RHGYIYSSLAGYVLK----KNEGEQLPVISVVRETE 59
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + +R A I+ VG+ +++ F G IR
Sbjct: 60 VQLLPDVGAIVTCKVTSINSRFAKVHILYVGSTPLKDLFRGTIR 103
>gi|148225176|ref|NP_001086901.1| exosome component 1 [Xenopus laevis]
gi|50415689|gb|AAH77633.1| MGC86284 protein [Xenopus laevis]
Length = 194
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L + G G + +G ++ASL G + S P + V
Sbjct: 9 PGERLCSTEDCAPGYGTFC--RHGYIFASLAGYIVKKS----DNGLMPIISVVRDTDSHL 62
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ GSVV +VT + +R A IM +G+ +R F G IR
Sbjct: 63 LPDVGSVVTCKVTSINSRFAKVQIMYIGSTPLRNTFRGTIR 103
>gi|268324527|emb|CBH38115.1| conserved hypothetical protein [uncultured archaeon]
Length = 187
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E+E +V PG+ LG + E G G Y G +YAS+TG + S + ++V
Sbjct: 2 EKEEGIVVPGDFLGTSEEFTPGMGVY--DETGNIYASVTGEI--------SISDKRVIDV 51
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE 106
PVPE G VVI R+ + +A +I V K RE
Sbjct: 52 LPKVGTPPVPEEGDVVIGRIEDLRDAVAVVNIARVEGKGDRE 93
>gi|291404567|ref|XP_002718659.1| PREDICTED: exosomal core protein CSL4 [Oryctolagus cuniculus]
Length = 195
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMREAESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ GS+V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGSIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|407922424|gb|EKG15523.1| hypothetical protein MPH_07263 [Macrophomina phaseolina MS6]
Length = 209
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPD------------ 57
L PG+ LG +++ G G ++ H+ + ASL G + P +
Sbjct: 6 LALPGQPLGASSKYAPGPGVHI--HDAQLCASLLGPVSETKPLKRAAAGASTTTSSISAL 63
Query: 58 --QRPTVEVTGHK-----AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSG 110
RP+ + TG A +PE S+V+ARVT++ R A+ +I+ VG RE F G
Sbjct: 64 SIARPSAQ-TGSAYASIGASNILPEVDSIVLARVTRLTPRQATVEILVVGETVCREGFQG 122
Query: 111 IIR 113
IIR
Sbjct: 123 IIR 125
>gi|134081806|emb|CAK42062.1| unnamed protein product [Aspergillus niger]
Length = 204
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ----------- 58
L PG+ LG AG G +V N +YAS+ G + P S +
Sbjct: 8 LAIPGQRLGSIASYAAGPGTHV--QNATIYASIAGPVVVDQAQPSSKAKLILSVSRTGPK 65
Query: 59 RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ KA+ +P SVV+ARVT+V R A+ I+ + S +F +IR
Sbjct: 66 KAAAPAPSTKAYNTLPAVDSVVLARVTRVQKRQATVSILVNHSNSDELRFQALIR 120
>gi|397510699|ref|XP_003825729.1| PREDICTED: exosome complex component CSL4 [Pan paniscus]
Length = 184
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIF 117
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR I+
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRVEIY 108
>gi|225717872|gb|ACO14782.1| 3-5 exoribonuclease CSL4 homolog [Caligus clemensi]
Length = 210
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 10 LVTPGEVLGKATEVKA-GKGAYVAKHNGLVYASLTGLLRTLSPPPD------SPDQRPTV 62
LV PG L A E G G Y NG +Y+SL G ++ L D S + R TV
Sbjct: 6 LVVPGMRLCVADENNVPGPGTY--SQNGYIYSSLAGTMKLLRDKKDVSKSGSSSEVRITV 63
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V +P G +V RV V R A I+CV + E F G+IR
Sbjct: 64 -VPPCSGLSDIPSLGDIVTVRVIVVNPRFAKVQILCVRDSPLSEPFRGLIR 113
>gi|169614391|ref|XP_001800612.1| hypothetical protein SNOG_10336 [Phaeosphaeria nodorum SN15]
gi|111061551|gb|EAT82671.1| hypothetical protein SNOG_10336 [Phaeosphaeria nodorum SN15]
Length = 213
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 28/128 (21%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-----------------------LL 46
L PG++LG + G G ++ H +YAS+ G LL
Sbjct: 6 LALPGQLLGPTDKYLPGPGTHI--HEQQIYASIAGPVVSSPSRASQTAATASKSKLVPLL 63
Query: 47 RTLSPPPDSPDQRPTVEVTGHKAHGPV-PEPGSVVIARVTKVMTRMASADIMCVGAKSVR 105
PP + D P + TG P+ PE S V+AR+T++ R A+ +I+ +G R
Sbjct: 64 SISRPPNTTSD--PGILGTGSGGGAPILPEVDSTVLARITRLGARFATCEILVIGDTVCR 121
Query: 106 EKFSGIIR 113
E F G IR
Sbjct: 122 EAFQGQIR 129
>gi|225719628|gb|ACO15660.1| 3-5 exoribonuclease CSL4 homolog [Caligus clemensi]
Length = 210
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 10 LVTPGEVLGKATEVKA-GKGAYVAKHNGLVYASLTGLLRTLSPPPD------SPDQRPTV 62
LV PG L A E G G Y NG +Y+SL G ++ L D S + R TV
Sbjct: 6 LVVPGMRLCVADEDNVPGPGTY--SQNGYIYSSLAGTMKLLRDKKDVSKSGSSSEVRITV 63
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V +P G +V RV V R A I+CV + E F G+IR
Sbjct: 64 -VPPCSGLSDIPSLGDIVTVRVIVVNPRFAKVQILCVRDSPLSEPFWGLIR 113
>gi|345560325|gb|EGX43450.1| hypothetical protein AOL_s00215g186 [Arthrobotrys oligospora ATCC
24927]
Length = 209
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 22/124 (17%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRT--------------------L 49
LV PG+ LG + G+G +V NG + ASL G + T
Sbjct: 4 LVVPGQPLGPVSAYIPGQGVHV--FNGQIIASLVGQVVTNPQTTTTTTSTSTSTSTSTPT 61
Query: 50 SPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFS 109
+ PP Q+P + +PE S V+ R+T++ R A+A I V ++F
Sbjct: 62 AVPPTISVQKPVLTTDEETNATLLPEVSSTVLCRITRINPRQATASIFIVNNHICGDEFQ 121
Query: 110 GIIR 113
G+IR
Sbjct: 122 GVIR 125
>gi|340914869|gb|EGS18210.1| putative exosome 3'->5 protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSP--------------PPDS 55
L PG++LG ++ + G G +V + N +Y+SL G + P P +
Sbjct: 8 LALPGQLLGPISKYQPGPGTHVHESN--LYSSLLGTVHVTQPARAPGPVKRLNRITPAPT 65
Query: 56 PDQRPTVEVTGHKAHGP-------------VPEPGSVVIARVTKVMTRMASADIMCVGAK 102
P + PT+ V+ + G +PE G++V+ RV ++ R A I+ G
Sbjct: 66 PAELPTISVSAARPAGSAASGLVTGRKREILPEVGNIVLCRVIRITPRQAVVTILVCGDT 125
Query: 103 SVREKFSGIIR 113
+ ++ G+IR
Sbjct: 126 VLDAEWQGLIR 136
>gi|109463887|ref|XP_001054866.1| PREDICTED: exosome complex component CSL4-like isoform 1 [Rattus
norvegicus]
gi|354471138|ref|XP_003497800.1| PREDICTED: exosome complex component CSL4-like isoform 1
[Cricetulus griseus]
gi|392345105|ref|XP_003749167.1| PREDICTED: exosome complex component CSL4-like [Rattus norvegicus]
gi|149040177|gb|EDL94215.1| rCG57589, isoform CRA_a [Rattus norvegicus]
gi|149040180|gb|EDL94218.1| rCG57589, isoform CRA_a [Rattus norvegicus]
Length = 195
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>gi|395828347|ref|XP_003787345.1| PREDICTED: exosome complex component CSL4 [Otolemur garnettii]
Length = 195
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|389626809|ref|XP_003711058.1| 3'-5' exoribonuclease CSL4 [Magnaporthe oryzae 70-15]
gi|351650587|gb|EHA58446.1| 3'-5' exoribonuclease CSL4 [Magnaporthe oryzae 70-15]
gi|440466581|gb|ELQ35841.1| 3'-5' exoribonuclease CSL4 [Magnaporthe oryzae Y34]
gi|440486837|gb|ELQ66665.1| 3'-5' exoribonuclease CSL4 [Magnaporthe oryzae P131]
Length = 213
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQRP-------- 60
L PG++LG ++ +AG G ++ H +Y+SL G + P P P +RP
Sbjct: 9 LALPGQLLGPSSRYRAGPGTHI--HEANLYSSLLGAVSITQPAKPAGPTKRPNKIVKPGM 66
Query: 61 ----------TVEVTGHKAHGP-VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFS 109
T+ V + +PE G VV+ RVT+V + A I+ VG + ++
Sbjct: 67 LSSSAAENLPTISVQRRRRAAAALPEVGDVVLCRVTRVSHQQAIVAILVVGDAVLDAEWQ 126
Query: 110 GIIR 113
G+IR
Sbjct: 127 GVIR 130
>gi|344243180|gb|EGV99283.1| RRP12-like protein [Cricetulus griseus]
Length = 1390
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>gi|149040178|gb|EDL94216.1| rCG57589, isoform CRA_b [Rattus norvegicus]
Length = 178
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>gi|308497492|ref|XP_003110933.1| CRE-EXOS-1 protein [Caenorhabditis remanei]
gi|308242813|gb|EFO86765.1| CRE-EXOS-1 protein [Caenorhabditis remanei]
Length = 213
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 10 LVTPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV---T 65
LV PG+ VL + K G G Y A N VYAS+TG + + + +EV
Sbjct: 6 LVAPGDKVLDGIGDYKMGNGLYEA--NRRVYASVTGYVNVYGFRDKTDNLVQVIEVRRSE 63
Query: 66 GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+ +P G+VV A+V V R A DI+ +G K +++FS ++
Sbjct: 64 NQLDNELLPFNGAVVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALL 110
>gi|443699200|gb|ELT98810.1| hypothetical protein CAPTEDRAFT_21100 [Capitella teleta]
Length = 202
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 10 LVTPGEVLGKATEV-KAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG-H 67
+ PG+ L A + + G G + G +Y+SL G + + PD + V+VT
Sbjct: 6 ICVPGDRLCIADDTHQNGVGTFTVA--GFIYSSLAGFRQDVL----LPDGKIQVKVTSCS 59
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K G VPE GS+V AR+ + R I+ V + E F G IR
Sbjct: 60 KTQGTVPEVGSLVTARILSMNPRFCKCSILSVDGIVLHEAFRGTIR 105
>gi|344274905|ref|XP_003409255.1| PREDICTED: exosome complex component CSL4-like [Loxodonta africana]
Length = 195
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVVSVRRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|442761047|gb|JAA72682.1| Putative exosomal 3'-5' exoribonuclease complex subunit ski4,
partial [Ixodes ricinus]
Length = 240
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E MV V + GKG YV +G +Y+SL G T+ D + V+V
Sbjct: 53 ESLMVTVRRQRLCAAGDSFIGGKGTYV--QHGYIYSSLAGRF-TIERQKD----KKIVQV 105
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
VP PG++V A++T V R I+ + + E F GIIR
Sbjct: 106 Q-RSMDKNVPTPGNIVTAKITAVTHRFCKCSIIAIEDCELWEPFRGIIR 153
>gi|22267446|ref|NP_079920.1| exosome complex component CSL4 isoform 1 [Mus musculus]
gi|28380043|sp|Q9DAA6.1|EXOS1_MOUSE RecName: Full=Exosome complex component CSL4; AltName: Full=Exosome
component 1
gi|12838900|dbj|BAB24368.1| unnamed protein product [Mus musculus]
gi|19353756|gb|AAH24423.1| Exosome component 1 [Mus musculus]
gi|148709921|gb|EDL41867.1| exosome component 1, isoform CRA_b [Mus musculus]
Length = 195
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>gi|348588120|ref|XP_003479815.1| PREDICTED: exosome complex component CSL4-like isoform 1 [Cavia
porcellus]
Length = 195
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKRS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|62751675|ref|NP_001015529.1| exosome complex component CSL4 [Bos taurus]
gi|59858307|gb|AAX08988.1| exosomal core protein CSL4 [Bos taurus]
gi|126717389|gb|AAI33441.1| Exosome component 1 [Bos taurus]
gi|296472668|tpg|DAA14783.1| TPA: exosomal core protein CSL4 [Bos taurus]
gi|440901550|gb|ELR52467.1| 3'-5' exoribonuclease CSL4-like protein [Bos grunniens mutus]
Length = 195
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|149690173|ref|XP_001501548.1| PREDICTED: exosome complex component CSL4-like [Equus caballus]
Length = 195
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|426252875|ref|XP_004020128.1| PREDICTED: exosome complex component CSL4 [Ovis aries]
Length = 195
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVRILYVGSTPLKNSFRGTIR 104
>gi|148709920|gb|EDL41866.1| exosome component 1, isoform CRA_a [Mus musculus]
Length = 182
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 14 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 67
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 68 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 108
>gi|296220921|ref|XP_002756540.1| PREDICTED: exosome complex component CSL4 [Callithrix jacchus]
Length = 195
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|332212464|ref|XP_003255339.1| PREDICTED: exosome complex component CSL4 [Nomascus leucogenys]
Length = 195
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>gi|195030438|ref|XP_001988075.1| GH10967 [Drosophila grimshawi]
gi|193904075|gb|EDW02942.1| GH10967 [Drosophila grimshawi]
Length = 214
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M EE++++ PGE L + + V G+G Y + G +YA +G++ DS ++
Sbjct: 11 MSPNEEDLLICLPGERLCRVEDNVIVGEGTY--EQGGYIYACKSGIVNI----DDSTEKC 64
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + A I CV + + G++R
Sbjct: 65 QIVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 118
>gi|403259803|ref|XP_003922387.1| PREDICTED: exosome complex component CSL4 [Saimiri boliviensis
boliviensis]
Length = 195
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|149040181|gb|EDL94219.1| rCG57589, isoform CRA_d [Rattus norvegicus]
Length = 118
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKTS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>gi|7705612|ref|NP_057130.1| exosome complex component CSL4 [Homo sapiens]
gi|383872322|ref|NP_001244778.1| exosome component 1 [Macaca mulatta]
gi|114632191|ref|XP_507960.2| PREDICTED: exosome complex component CSL4 [Pan troglodytes]
gi|402881114|ref|XP_003904125.1| PREDICTED: exosome complex component CSL4 [Papio anubis]
gi|14285410|sp|Q9Y3B2.1|EXOS1_HUMAN RecName: Full=Exosome complex component CSL4; AltName: Full=Exosome
component 1
gi|4929685|gb|AAD34103.1|AF151866_1 CGI-108 protein [Homo sapiens]
gi|18314657|gb|AAH22067.1| Exosome component 1 [Homo sapiens]
gi|119570321|gb|EAW49936.1| exosome component 1 [Homo sapiens]
gi|189053953|dbj|BAG36460.1| unnamed protein product [Homo sapiens]
gi|208966238|dbj|BAG73133.1| exosome component 1 [synthetic construct]
gi|325463455|gb|ADZ15498.1| exosome component 1 [synthetic construct]
gi|355562674|gb|EHH19268.1| hypothetical protein EGK_19945 [Macaca mulatta]
gi|355783002|gb|EHH64923.1| hypothetical protein EGM_18255 [Macaca fascicularis]
gi|380813276|gb|AFE78512.1| exosome complex component CSL4 [Macaca mulatta]
gi|384947388|gb|AFI37299.1| exosome complex component CSL4 [Macaca mulatta]
gi|410338323|gb|JAA38108.1| exosome component 1 [Pan troglodytes]
Length = 195
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>gi|57107227|ref|XP_534981.1| PREDICTED: exosome complex component CSL4 isoform 1 [Canis lupus
familiaris]
Length = 195
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|297687146|ref|XP_002821091.1| PREDICTED: exosome complex component CSL4 [Pongo abelii]
Length = 195
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>gi|122920915|pdb|2NN6|I Chain I, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 209
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 24 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 77
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 118
>gi|17555992|ref|NP_499416.1| Protein EXOS-1 [Caenorhabditis elegans]
gi|3881058|emb|CAA19529.1| Protein EXOS-1 [Caenorhabditis elegans]
Length = 208
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 10 LVTPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
LV PG+ VL E + GKG Y A N ++AS+ G + S + +EV +
Sbjct: 6 LVAPGDKVLDAIGEYRMGKGLYEA--NRRIFASVAGFVNVYGFRDKSDNLVQVIEVRRSE 63
Query: 69 AHGP---VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+P G++V A+V V R A DI+ +G K +++FS ++
Sbjct: 64 DQLDNELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALL 110
>gi|301763224|ref|XP_002917030.1| PREDICTED: 3'-5' exoribonuclease CSL4 homolog [Ailuropoda
melanoleuca]
gi|410975790|ref|XP_003994312.1| PREDICTED: exosome complex component CSL4 [Felis catus]
gi|281348504|gb|EFB24088.1| hypothetical protein PANDA_005192 [Ailuropoda melanoleuca]
gi|355686783|gb|AER98185.1| exosome component 1 [Mustela putorius furo]
Length = 195
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVISVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|195118728|ref|XP_002003888.1| GI18151 [Drosophila mojavensis]
gi|193914463|gb|EDW13330.1| GI18151 [Drosophila mojavensis]
Length = 214
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 4 KEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
E++M++ PG+ L + + + G+G Y + G +YAS +G++ D +++ +
Sbjct: 14 NEDDMLICLPGDRLCRVEDNIVVGQGTY--EQGGYIYASKSGIINI-----DESNEKCQI 66
Query: 63 EVTGHKA--HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V+ HK H +P G VV ARV + A I CV + + G++R
Sbjct: 67 -VSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 118
>gi|340522313|gb|EGR52546.1| predicted protein [Trichoderma reesei QM6a]
Length = 560
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQR------PTV 62
L PG VLG ++ G G +V + G V +SL G + +P P +R PT
Sbjct: 9 LAIPGTVLGPTSKYAPGPGTHV--YGGNVVSSLLGNVSVTAPAKAPGPVKRLNKITAPTA 66
Query: 63 E-------VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
E V + +P+ G++V+ARV ++M + A I VG+ ++ ++ G+IR
Sbjct: 67 EELSTISVVRRGRKREVLPDVGNIVLARVVRLMPKQAIVVIQQVGSTVLQTEWQGVIR 124
>gi|429861888|gb|ELA36551.1| exosomal core protein csl4 [Colletotrichum gloeosporioides Nara
gc5]
Length = 238
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 23/122 (18%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDS--------------PDQ 58
PG+ LG + AG G ++ +NG V ASL G ++ S D+
Sbjct: 12 PGKALGSTSRYAAGPGTHI--YNGNVVASLMGKVKVTPSAKASTGPAKRLTRITALPADE 69
Query: 59 RPTVEV-------TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGI 111
PT+ V G K +P+ G+VV+ RV ++M + A I VG ++ ++ G+
Sbjct: 70 LPTLSVVPRQAQANGDKKREVLPDVGNVVLCRVVRLMPKQAIVTIQQVGDTVLQTEWQGV 129
Query: 112 IR 113
IR
Sbjct: 130 IR 131
>gi|410917201|ref|XP_003972075.1| PREDICTED: exosome complex component CSL4-like [Takifugu rubripes]
Length = 193
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L A + G G Y+ +G +++SL G + S + P + V
Sbjct: 8 PGEKLCSAEDCVLGTGVYL--RHGYIHSSLAGYVVRKS----EGKELPMISVVRGTELQL 61
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + R A I+ VG+ S+++ F G IR
Sbjct: 62 LPDVGAIVTCKVTSINPRFAKVHILKVGSTSLKDHFKGTIR 102
>gi|194041797|ref|XP_001928838.1| PREDICTED: exosome complex component CSL4 [Sus scrofa]
Length = 195
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P + V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVISVMRETDSQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|351712058|gb|EHB14977.1| 3'-5' exoribonuclease CSL4-like protein [Heterocephalus glaber]
Length = 195
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLTKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVYILYVGSTPLKNSFRGTIR 104
>gi|195384852|ref|XP_002051126.1| GJ14547 [Drosophila virilis]
gi|194147583|gb|EDW63281.1| GJ14547 [Drosophila virilis]
Length = 214
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 4 KEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTV 62
E+E+++ PGE L + + + G+G Y + G +YA +G++ D ++ +
Sbjct: 14 NEDEILICLPGERLCRVEDNIIVGQGTY--EQGGYIYACKSGIVHI-----DETTEKCQI 66
Query: 63 EVTGHKA--HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V+ HK H +P G VV ARV + A I CVG + + G++R
Sbjct: 67 -VSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVGNVLLESSYRGLLR 118
>gi|410215812|gb|JAA05125.1| exosome component 1 [Pan troglodytes]
Length = 195
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTY--PRHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>gi|431838940|gb|ELK00869.1| 3'-5' exoribonuclease CSL4 like protein [Pteropus alecto]
Length = 195
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G + S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCMTKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|221483929|gb|EEE22233.1| 3'-5' exoribonuclease csl4, putative [Toxoplasma gondii GT1]
Length = 269
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 12 TPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE--VTGHKA 69
TPGE L +E G+G YV + +YA++ G+ + P +P +PT G K
Sbjct: 69 TPGERLSSTSEYACGRGTYV--KDDFIYAAVVGIEQIDHP---TPRGQPTTTEGRAGQKR 123
Query: 70 HG--PV-------------PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G PV P G V+A+VTKV I+ V ++ E F G IR
Sbjct: 124 AGGLPVLSVVPFAKSASVLPTTGCFVLAQVTKVARHRVECSILAVDGHTLAEPFRGFIR 182
>gi|322705465|gb|EFY97051.1| exosomal core protein CSL4 [Metarhizium anisopliae ARSEF 23]
Length = 208
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLL-------------RTLSPPPDSPDQR 59
PG VLG A+ G G + H G V +SL G + R +P++
Sbjct: 12 PGHVLGPASRYTPGPGTHT--HQGNVVSSLLGRVHVAAPAKAPGPAKRLNKITAAAPEEL 69
Query: 60 PTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRF 114
PTV V H + +P+ +VV+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 70 PTVSVARHGRRREILPDVNNVVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIRV 125
>gi|194332723|ref|NP_001123851.1| exosome component 1 [Xenopus (Silurana) tropicalis]
gi|189441871|gb|AAI67725.1| LOC100170616 protein [Xenopus (Silurana) tropicalis]
Length = 194
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L + G G + +G ++ASL G + + P + V
Sbjct: 9 PGERLCSTEDCAPGYGTFC--RHGYIFASLAGYIVKKT----DNGLMPVISVVRETDSHL 62
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ GSVV +VT + +R A IM +G+ + F G IR
Sbjct: 63 LPDVGSVVTCKVTSINSRFAKVQIMYIGSTPLSNTFRGTIR 103
>gi|310794374|gb|EFQ29835.1| exosome component EXOSC1/CSL4 [Glomerella graminicola M1.001]
Length = 211
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASL-------------TGLLRTLSPPPD-SPDQ 58
PG++LG T AG G +V +NG V ASL TGL + L+ S D+
Sbjct: 12 PGKILGPTTRYAAGPGTHV--YNGNVVASLLGDVTVTPSAKAQTGLTKRLNRITQLSADE 69
Query: 59 RPTVEVTGH---KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
T+ V K +P+ G++V+ RV ++M + A I VG ++ ++ G+IR
Sbjct: 70 LATISVARRGTSKKREVLPDVGNMVLCRVVRLMPKQAIVTIQQVGDTVLQTEWQGVIR 127
>gi|268574534|ref|XP_002642245.1| C. briggsae CBR-EXOS-1 protein [Caenorhabditis briggsae]
Length = 207
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 10 LVTPGE-VLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
LV PG+ VL + + K G G Y + N +++S+ G + S + +EV +
Sbjct: 6 LVAPGDKVLDRIGDYKMGNGLY--ETNRRIFSSIAGFVNVYGFRDKSDNLIQVIEVRRSE 63
Query: 69 AHGP---VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+P G+VV A+V V R A DI+ +G K +++FS ++
Sbjct: 64 DQMDNELLPFSGAVVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALL 110
>gi|417396863|gb|JAA45465.1| Putative exosome complex component csl4-like protein [Desmodus
rotundus]
Length = 195
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G + S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCVTKSS----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|85102296|ref|XP_961311.1| hypothetical protein NCU04155 [Neurospora crassa OR74A]
gi|12718206|emb|CAC28750.1| conserved hypothetical protein [Neurospora crassa]
gi|28922854|gb|EAA32075.1| hypothetical protein NCU04155 [Neurospora crassa OR74A]
Length = 214
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP---------------PD 54
+ PG+ LG ++ + G G ++ H +Y+SL G++ P
Sbjct: 10 MAIPGQFLGPVSKFQPGPGTHI--HESNLYSSLLGVVNITQPAKAPGPAKRLNKIINTQT 67
Query: 55 SPDQRPTVEVTGHKAHGP----VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSG 110
+P + PT+ V +PE G++V+ RV ++M R A I+ G + ++ G
Sbjct: 68 TPAELPTISVLRSAGSSDKREVLPEVGNIVLCRVIRIMPRQAVVAILICGDTVLEAEWQG 127
Query: 111 IIR 113
+IR
Sbjct: 128 LIR 130
>gi|440789538|gb|ELR10845.1| RNA-binding domain-containing protein [Acanthamoeba castellanii
str. Neff]
Length = 240
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV- 64
E +V PG+ +G A + AG+G YV +YAS+ G R LSP ++ R + V
Sbjct: 24 EAGAVVVPGQRVGHAEDYAAGEGTYV--RGSHIYASVLGRRRLLSPA-EAQRWREGLNVG 80
Query: 65 ------TGHKAHGP-------------------VPEPGSVVIARVTKVMTRMASADIMCV 99
G + G VP G VV V +V R+A+ +I CV
Sbjct: 81 EEASPVNGGEDAGKSVVVVEKAGGRGLGGGGGWVPRAGDVVTGVVVRVTPRVAAVNIACV 140
Query: 100 GAKSVREKFSGIIR 113
G +++ E FSGI+R
Sbjct: 141 GRRALPETFSGIVR 154
>gi|221505209|gb|EEE30863.1| 3'-5' exoribonuclease csl4, putative [Toxoplasma gondii VEG]
Length = 269
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 12 TPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG----- 66
TPGE L +E G+G YV + +YA++ G+ + P P Q T E G
Sbjct: 69 TPGERLSSTSEYACGRGTYV--KDDFIYAAVVGIEQIDHPTPRG--QPTTTEGRGGQKRA 124
Query: 67 -----------HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K+ +P G V+A+VTKV I+ V ++ E F G IR
Sbjct: 125 GGLPVLSVVPFAKSASVLPTTGCFVLAQVTKVARHRVECSILAVDGHTLAEPFRGFIR 182
>gi|342879077|gb|EGU80352.1| hypothetical protein FOXB_09149 [Fusarium oxysporum Fo5176]
Length = 208
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP--------------DQ 58
PG VLG T+ G G +V + G V +SL G + T++PP +P ++
Sbjct: 12 PGNVLGPVTKFAPGAGTHV--YEGNVVSSLLGRV-TVTPPTKNPGPQKRLNKITAPTTEE 68
Query: 59 RPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
T+ V+ H + +P+ ++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 69 LATISVSRHGRKREILPDVENIVLARVLRLMPKQAIVVIQQVGDTVLQTEWQGVIR 124
>gi|241647943|ref|XP_002410000.1| exosomal 3'-5' exoribonuclease complex, subunit ski4, putative
[Ixodes scapularis]
gi|215501492|gb|EEC10986.1| exosomal 3'-5' exoribonuclease complex, subunit ski4, putative
[Ixodes scapularis]
Length = 186
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 26 GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85
GKG YV +G +Y+SL G T+ D + V+V VP PG++V A++T
Sbjct: 20 GKGTYV--QHGYIYSSLAGRF-TIERQKD----KKIVQVQ-RSMDKNVPTPGNIVTAKIT 71
Query: 86 KVMTRMASADIMCVGAKSVREKFSGIIR 113
V R I+ + + E F GIIR
Sbjct: 72 AVTHRFCKCSIIAIEDCELWEPFRGIIR 99
>gi|440635670|gb|ELR05589.1| hypothetical protein GMDG_01780 [Geomyces destructans 20631-21]
Length = 218
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-------------PDSP 56
+ PG+ LG +T+ G G ++ H ++AS+ G + PP P +P
Sbjct: 8 IAIPGQPLGASTKYIPGPGTHL--HLSQIHASILGPIHLTHPPKPVGPQKRLTKITPSAP 65
Query: 57 DQRPTVEVTGHKA------------HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSV 104
PT+ V A +PE S+V+ RVT++ R AS I+ VG
Sbjct: 66 TPLPTISVLRSPALDTKPGEVQTAKREAIPEVSSIVLCRVTRITARQASVAILVVGETVG 125
Query: 105 REKFSGIIR 113
++ G++R
Sbjct: 126 EGEWQGVVR 134
>gi|336472238|gb|EGO60398.1| hypothetical protein NEUTE1DRAFT_119585 [Neurospora tetrasperma
FGSC 2508]
gi|350294544|gb|EGZ75629.1| hypothetical protein NEUTE2DRAFT_105638 [Neurospora tetrasperma
FGSC 2509]
Length = 214
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP---------------PD 54
+ PG+ LG ++ + G G ++ H +Y+SL G++ P
Sbjct: 10 MAIPGQFLGPISKFQPGPGTHI--HESNLYSSLLGVVNITQPAKAPGPAKRLNKIINTQT 67
Query: 55 SPDQRPTVEVTGHKAHGP----VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSG 110
+P + PT+ V +PE G++V+ RV ++M R A I+ G + ++ G
Sbjct: 68 TPAELPTISVLRSAGSSDKREVLPEVGNIVLCRVIRIMPRQAVVAILICGDTVLEAEWQG 127
Query: 111 IIR 113
+IR
Sbjct: 128 LIR 130
>gi|68069599|ref|XP_676711.1| 3'-5' exoribonuclease [Plasmodium berghei strain ANKA]
gi|56496530|emb|CAH95860.1| 3'-5' exoribonuclease Csl4 homolog, putative [Plasmodium berghei]
Length = 194
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+V PGEV+G +G Y+ N + +++ G + +S + + + + + K
Sbjct: 4 IVLPGEVVGNINNYISGNNTYIL--NNEIRSTILG-KKNISI---NNENKQIINIDVIKD 57
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ P+P+ G +VI +V +V M +IM K ++ G I
Sbjct: 58 YTPLPQVGDLVICKVYRVTFNMIYCNIMLTNNKPLKNSLKGYIN 101
>gi|346319938|gb|EGX89539.1| exosome component 1 [Cordyceps militaris CM01]
Length = 208
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP------------- 56
L PG VLG ++ G G ++ + N V +SL G + T+ PP +P
Sbjct: 9 LAIPGRVLGPVSKYAPGAGTHIFEGN--VVSSLMGNV-TIIPPSKTPGPAKRLNKITAPV 65
Query: 57 -DQRPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
D+ T+ V H + +P+ ++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 66 SDELSTITVARHGRKREILPDVNNIVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIR 124
>gi|29841415|gb|AAP06447.1| similar to NM_016046 homolog of yeast exosomal core protein CSL4 in
Homo sapiens [Schistosoma japonicum]
Length = 250
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 10 LVTPGEVLGKATEV-KAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+V PG+++ + K+G Y +G +++S G ++ S D TV V K
Sbjct: 6 IVVPGDLICCSNATNKSGTSTYC--RSGNIFSSAFGYIKEES----HADGSKTVSVEPLK 59
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G VP G++V+A+V + R DI+ VG + F G+IR
Sbjct: 60 TAGIVPYAGAIVLAKVCSITGRFVRCDIVAVGDVYLSGPFKGLIR 104
>gi|291415944|ref|XP_002724209.1| PREDICTED: exosomal core protein CSL4 [Oryctolagus cuniculus]
Length = 195
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLRNLEEGSPGSGTYT--QHGYIFSSLAGCLTKTS----ENGALPVVSVMREAESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ GS+V +V+ + + A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGSIVTCKVSSINSCFAKVHILYVGSTPLKNFFRGTIR 104
>gi|47223879|emb|CAG06056.1| unnamed protein product [Tetraodon nigroviridis]
Length = 192
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L A + G G Y+ +G +++SL G + + + P + V
Sbjct: 8 PGEKLCSAEDCIPGPGVYL--RHGHIHSSLAGYVIRKT----EGKELPMISVVRGTESQL 61
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +VT + R A I+ VG+ S+++ F G IR
Sbjct: 62 LPDVGAIVTCKVTSINPRFAKVHILKVGSTSLKDHFRGTIR 102
>gi|396477146|ref|XP_003840207.1| similar to exosome complex subunit Csl4 [Leptosphaeria maculans
JN3]
gi|312216778|emb|CBX96728.1| similar to exosome complex subunit Csl4 [Leptosphaeria maculans
JN3]
Length = 212
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 35/131 (26%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
L PG++LG + G G ++ + N +YAS+ G + + SPP +P PT + KA
Sbjct: 6 LALPGQLLGHTDKYLPGPGTHIHESN--IYASIAGPVLS-SPPSHNP---PTP--SSSKA 57
Query: 70 HG----------PVPEPG-----------------SVVIARVTKVMTRMASADIMCVGAK 102
H P PG S+V+ R+T++ R A+ DI+ +
Sbjct: 58 HPTPLLSVARPPPTSSPGILGPSSGGGTALLPTISSIVLCRITRLGPRFATCDILVIDDV 117
Query: 103 SVREKFSGIIR 113
RE F G IR
Sbjct: 118 VCREAFQGQIR 128
>gi|194861810|ref|XP_001969861.1| GG10323 [Drosophila erecta]
gi|190661728|gb|EDV58920.1| GG10323 [Drosophila erecta]
Length = 204
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 1 MVVKEEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
M +++E V+ PGE L + + + G G Y + NG +YAS +G++ +S +
Sbjct: 1 MSAQQDETVVCLPGERLCRTEDNIVLGIGTY--EQNGYIYASKSGIVHI----EESGENC 54
Query: 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V V H +P G VV ARV + I CV + + G++R
Sbjct: 55 QVVSVHKPGFHLTIPATGDVVTARVLVTTPKFVKCAIFCVRNVLLESSYRGLLR 108
>gi|430811801|emb|CCJ30726.1| unnamed protein product, partial [Pneumocystis jirovecii]
gi|430813990|emb|CCJ28713.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 254
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG-LLRTLSPPPDSPDQRPT-----VE 63
LV PG+ + G G + H + AS+ G ++++L DS Q ++
Sbjct: 94 LVLPGQPISPINAATGGPGTII--HTSFIRASIPGKIVQSL----DSNGQHQISVERLLD 147
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ K +PE ++V+ RVTK+ + A+ +I VG + +F GIIR
Sbjct: 148 MFHRKGSSILPEVNAIVLGRVTKIKPKEATVNIFVVGETVCQREFQGIIR 197
>gi|237836691|ref|XP_002367643.1| 3'-5' exoribonuclease csl4, putative [Toxoplasma gondii ME49]
gi|211965307|gb|EEB00503.1| 3'-5' exoribonuclease csl4, putative [Toxoplasma gondii ME49]
Length = 269
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 12 TPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG----- 66
TPGE L +E G+G YV + +YA++ G+ + P P Q T+E G
Sbjct: 69 TPGERLSSTSEYACGRGTYV--KDDFIYAAVVGIEQIDHPTPRG--QPTTIEGRGGQKRA 124
Query: 67 -----------HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K+ +P G V+A+V KV I+ V ++ E F G IR
Sbjct: 125 GGLPVLSVVPFAKSASVLPTTGCFVLAQVAKVARHRVECSILAVDGHTLAEPFRGFIR 182
>gi|432113107|gb|ELK35685.1| Exosome complex component CSL4 [Myotis davidii]
Length = 195
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G + P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCMTKSC----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|336257905|ref|XP_003343774.1| hypothetical protein SMAC_04432 [Sordaria macrospora k-hell]
gi|380091597|emb|CCC10729.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 214
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 25/125 (20%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP---------------PD 54
+ PG+ LG ++ + G G ++ H + ASL G++ P
Sbjct: 10 MAIPGQFLGPVSKFQPGPGTHI--HESNLCASLLGVVNITQPAKAPGPAKRLNKIINTQT 67
Query: 55 SPDQRPTVEVTGHKAHGP------VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKF 108
SP + PT+ V +A G +PE G++V+ RV ++M R A I+ G + ++
Sbjct: 68 SPAELPTISVL--RAAGSSDKREVLPEVGNIVLCRVIRIMPRQAVVAILICGDTVLEAEW 125
Query: 109 SGIIR 113
G+IR
Sbjct: 126 QGLIR 130
>gi|400596719|gb|EJP64475.1| exosome component EXOSC1/CSL4 [Beauveria bassiana ARSEF 2860]
Length = 208
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP------------- 56
L PG VLG ++ G G ++ + N V +SL G + T+ PP +P
Sbjct: 9 LAIPGRVLGPVSKYAPGAGTHIFEGN--VVSSLMGNV-TVMPPAKAPGPAKRLNKLTAPS 65
Query: 57 -DQRPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
D+ T+ V H + +P+ ++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 66 SDELSTITVARHGRKREILPDVNNIVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIR 124
>gi|198474701|ref|XP_001356791.2| GA19469 [Drosophila pseudoobscura pseudoobscura]
gi|198138507|gb|EAL33857.2| GA19469 [Drosophila pseudoobscura pseudoobscura]
Length = 205
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 EEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+E V+ PGE L + + V G G Y + NG +YAS +G++ +S + V
Sbjct: 6 DENTVVCLPGERLCRVEDNVVLGIGTY--EQNGYIYASKSGVVNI----EESGENCQVVS 59
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V H +P G VV ARV + A I CV + + G++R
Sbjct: 60 VHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 109
>gi|195148326|ref|XP_002015125.1| GL18587 [Drosophila persimilis]
gi|194107078|gb|EDW29121.1| GL18587 [Drosophila persimilis]
Length = 205
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 EEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+E V+ PGE L + + V G G Y + NG +YAS +G++ +S + V
Sbjct: 6 DENTVVCLPGERLCRVEDNVVLGIGTY--EQNGYIYASKSGVVNI----EESGENCQVVS 59
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V H +P G VV ARV + A I CV + + G++R
Sbjct: 60 VHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLR 109
>gi|403220682|dbj|BAM38815.1| 3'-5' exoribonuclease [Theileria orientalis strain Shintoku]
Length = 183
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+V PG +LG E YV + ++Y+++ G + S DS + +V V +
Sbjct: 4 IVFPGTLLGTVHEYTPSNNVYV--KDSVIYSAILGNVSYSSE--DS--TKTSVSVVSN-- 55
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
H P G+ VIA++ K+ A +I+CV + V++ F G++
Sbjct: 56 HIKTPYVGATVIAQIIKLNITKAECNIICVDGRFVKDYFKGVL 98
>gi|357603889|gb|EHJ63965.1| hypothetical protein KGM_08299 [Danaus plexippus]
Length = 223
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 25 AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84
AG G Y K G +Y+ LTG+L+T D + + V + +P G +V A+V
Sbjct: 28 AGPGTYELK--GYIYSMLTGVLKTEE---DEERKATRICVVSPRTPSVLPVTGDIVTAKV 82
Query: 85 TKVMTRMASADIMCVGAKSVREKFSGIIR 113
T V +R + I+CVG + + GI++
Sbjct: 83 TVVNSRQVNCIILCVGPSPLVRPYRGILK 111
>gi|46125893|ref|XP_387500.1| hypothetical protein FG07324.1 [Gibberella zeae PH-1]
Length = 603
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP--------------DQ 58
PG+VLG T+ G G + + G V +SL G + T++P P ++
Sbjct: 12 PGKVLGPVTKFAPGAGTHA--YEGNVVSSLLGQV-TVTPAAKGPGPQKRLNKITAPTSEE 68
Query: 59 RPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
T+ V+ H + +P+ ++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 69 LATISVSRHGRKREILPDVDNIVLARVLRLMPKQAIVVIQQVGDTVLQTEWQGLIR 124
>gi|170033758|ref|XP_001844743.1| exosomal 3'-5' exoribonuclease complex subunit ski4 [Culex
quinquefasciatus]
gi|167874820|gb|EDS38203.1| exosomal 3'-5' exoribonuclease complex subunit ski4 [Culex
quinquefasciatus]
Length = 213
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 10 LVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+ PG+ L TE G+G Y + G ++ASL+G++R ++ + V
Sbjct: 17 ICVPGQRLCAVTEYTVGGEGTY--EKLGYLHASLSGVVRIRKRKKNN-----HISVASFG 69
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VP G VV A++T + R A I+C+G + + GI+R
Sbjct: 70 SKTVVPVMGDVVTAKITVINQRFAKCVIICIGKTCLNRPYRGILR 114
>gi|449017378|dbj|BAM80780.1| similar to 3'-5' exoribonuclease CSL4 [Cyanidioschyzon merolae
strain 10D]
Length = 213
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHN---GLVYASLTGLLRTLSPPPDSPDQRPTVEVT- 65
V PGEV G A E+ K + +YA + + + + TV+
Sbjct: 51 FVLPGEVTGNAEELAYNASGVFYKWDLELRSLYAGVLTCSEQCATSAKAAQRLATVQCDL 110
Query: 66 -----GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
KA +P PG VIA V +V R A+A I+ VG + +F G++R
Sbjct: 111 ENPRGDQKASALIPRPGKRVIAVVLRVNRRQATALILHVGTVPAKSEFIGVVR 163
>gi|194761250|ref|XP_001962842.1| GF14226 [Drosophila ananassae]
gi|190616539|gb|EDV32063.1| GF14226 [Drosophila ananassae]
Length = 202
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 6 EEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
EE ++ PGE L + + + G G Y + NG +YAS +G++ +S + V V
Sbjct: 6 EETIVCLPGERLCRIEDNIVLGVGTY--EQNGYIYASKSGIVNI----EESGENCQVVNV 59
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
H +P G +V ARV + I CV + + G++R
Sbjct: 60 HKPGFHLTIPTTGDIVTARVLVTTPKFVKCAIFCVRNVLLENSYRGLLR 108
>gi|83317659|ref|XP_731258.1| 3'-5' exoribonuclease Csl4 [Plasmodium yoelii yoelii 17XNL]
gi|23491235|gb|EAA22823.1| 3'-5' exoribonuclease csl4 homolog (ec 3.1.13.-) (cgi-108). [human,
putative [Plasmodium yoelii yoelii]
Length = 195
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+V PGEV+G +G Y+ N + +++ G + +S + + + + + K
Sbjct: 5 IVLPGEVVGNLNNYISGNNTYIL--NNEIRSTILG-KKNISI---NNENKEIINIDVIKD 58
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ P+P+ G +VI +V +V M +I+ K ++ G I
Sbjct: 59 YTPLPQVGDLVICKVYRVTFNMIYCNILLTNNKPLKNSLKGYIN 102
>gi|195434078|ref|XP_002065030.1| GK15242 [Drosophila willistoni]
gi|194161115|gb|EDW76016.1| GK15242 [Drosophila willistoni]
Length = 213
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 5 EEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
+ + + PGE L + + + G G Y + NG +YA +G++ D D+ +
Sbjct: 14 DSDELFCLPGERLCRVEDNIILGLGTY--EQNGYIYACKSGIVSI-----DDSDENTQI- 65
Query: 64 VTGHKA--HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V+ HK H +P G +V ARV + A I CV + + + G++R
Sbjct: 66 VSVHKPGFHLTIPVTGDIVTARVLVTTPKFAKCAIFCVRNQLLENSYRGLLR 117
>gi|324506406|gb|ADY42737.1| 3'-5' exoribonuclease CSL4 [Ascaris suum]
gi|324522916|gb|ADY48155.1| 3'-5' exoribonuclease CSL4 [Ascaris suum]
Length = 224
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 11 VTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-- 67
V PG+ L +E ++AG G Y + G +YASL G++ L P + Q TVEV +
Sbjct: 20 VFPGDRLFPISERLRAGIGTY--ELFGHIYASLFGVVHML-PATEGTKQVTTVEVRRNNE 76
Query: 68 -KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VP G + A+V + A I+CV A + +FS ++R
Sbjct: 77 IEQRHIVPYIGCIATAKVQNIGPNYAKCGIVCVDASMLAHEFSALLR 123
>gi|70944928|ref|XP_742342.1| 3'-5' exoribonuclease Csl4 [Plasmodium chabaudi chabaudi]
gi|56521265|emb|CAH75916.1| 3'-5' exoribonuclease Csl4 homolog, putative [Plasmodium chabaudi
chabaudi]
Length = 198
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+V PGEV+G G Y+ K+ + +++ G + +S +S + + + K
Sbjct: 8 IVLPGEVVGSLNNYINGSNTYILKNE--IRSTILG-KKNISINNES---KQIINIDVIKD 61
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ P+P+ G +VI +V +V M +IM K ++ G I
Sbjct: 62 YVPLPQVGDLVICKVYRVTFNMIYCNIMLRNNKPLKNSLKGYIN 105
>gi|324507333|gb|ADY43114.1| 3'-5' exoribonuclease CSL4 [Ascaris suum]
Length = 224
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 11 VTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-- 67
V PG+ L +E ++AG G Y + G +YASL G++ L P + Q TVEV +
Sbjct: 20 VFPGDRLFPISERLRAGIGTY--ELFGHIYASLFGVVHML-PATEGTKQVTTVEVRRNNE 76
Query: 68 -KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VP G + A+V + A I+CV A + +FS ++R
Sbjct: 77 IEQRHIVPYIGCIATAKVQNIGPNYAKCGIVCVDASMLAHEFSALLR 123
>gi|312069234|ref|XP_003137587.1| hypothetical protein LOAG_02001 [Loa loa]
gi|307767251|gb|EFO26485.1| hypothetical protein LOAG_02001 [Loa loa]
Length = 215
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 11 VTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLR---TLSPPPDSPDQRPTVEVTG 66
V PG+ L +E +KAG G Y + G +YASL G L T+ ++ E
Sbjct: 23 VIPGDRLFPISEQLKAGIGTY--ELFGHIYASLAGTLHMYTTVERDKETKIVEVRRESEK 80
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K H +P G +V A+V + R A I CV + +F+GI+R
Sbjct: 81 EKRH-IMPYVGCIVTAKVQNIGQRFAKCAIHCVECSVLSHEFNGILR 126
>gi|339234281|ref|XP_003382257.1| 3'-5' exoribonuclease CSL4-like protein [Trichinella spiralis]
gi|316978754|gb|EFV61688.1| 3'-5' exoribonuclease CSL4-like protein [Trichinella spiralis]
Length = 213
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 23 VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPV-PEPGSVVI 81
+++G G YVA +G +ASL G L+ L+ D VEV + + P P +VV
Sbjct: 26 IRSGYGCYVA--HGYYFASLAGQLK-LTKENDCA----VVEVVRENSSTSILPSPQAVVT 78
Query: 82 ARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
RVT V + A I+ V + F GIIR
Sbjct: 79 CRVTGVANKYAKCTILMVHNNILPYPFVGIIR 110
>gi|19076010|ref|NP_588510.1| exosome subunit Csl4 (predicted) [Schizosaccharomyces pombe 972h-]
gi|28380026|sp|O59821.2|CSL4_SCHPO RecName: Full=Exosome complex component csl4
gi|3395592|emb|CAA20134.1| exosome subunit Csl4 (predicted) [Schizosaccharomyces pombe]
Length = 181
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M LV PG+V+ + A G K + ++ TG+ P +S VE T
Sbjct: 1 MNLVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA- 52
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+P GS+V+ARV+++ R A+ +I V +++F G+I
Sbjct: 53 ----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVI 93
>gi|327288885|ref|XP_003229155.1| PREDICTED: 3'-5' exoribonuclease CSL4 homolog [Anolis carolinensis]
Length = 194
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G ++ASL G L S P + V
Sbjct: 9 PGERLCSLEEGVPGSGTYT--RHGFIFASLAGCLVRKS----ENGTLPVISVMRDVESQL 62
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+ V +V + +R A I+ VG+ ++ F G IR
Sbjct: 63 LPDVGATVTCKVCSINSRFAKVHILYVGSSPLKTPFRGTIR 103
>gi|91084271|ref|XP_971155.1| PREDICTED: similar to Csl4 CG6249-PA [Tribolium castaneum]
gi|270008798|gb|EFA05246.1| hypothetical protein TcasGA2_TC015397 [Tribolium castaneum]
Length = 196
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 25 AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84
+G+G Y + G +YA+L G++ + P D+ +EV VP G +V A++
Sbjct: 22 SGQGTY--ERGGYIYATLAGVVDIV--PKDNVQ---IIEVRSSGQETLVPSQGDIVTAQI 74
Query: 85 TKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ + I CVG K + ++ GI+R
Sbjct: 75 HTITQQFCKCYIKCVGDKVLGRQYRGILR 103
>gi|358389682|gb|EHK27274.1| hypothetical protein TRIVIDRAFT_114665, partial [Trichoderma virens
Gv29-8]
Length = 529
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 16/118 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQR------PTV 62
L PG +LG A++ +G G ++ + G + +SL G + ++P P +R P+V
Sbjct: 9 LAIPGTILGPASKYASGPGTHI--YEGSIVSSLLGNVAVIAPAKAPGPVKRLNKITAPSV 66
Query: 63 E-------VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
E + + +P+ G++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 67 EELATISVIRRGRKREVLPDVGNIVLARVVRLMPKQAIVVIQQVGETVLQTEWQGVIR 124
>gi|432098414|gb|ELK28213.1| Exosome complex component CSL4 [Myotis davidii]
Length = 197
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G + P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCMTKSC----ENGALPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR 104
>gi|189502870|gb|ACE06816.1| unknown [Schistosoma japonicum]
Length = 257
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 10 LVTPGEVLGKATEV-KAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+V PG+++ + K+G Y N +++ G ++ S D TV V K
Sbjct: 6 IVVPGDLICCSNATNKSGTSTYCRAGN--IFSGAFGYIKEES----HADGSKTVSVEPLK 59
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G VP G++V+A+V + R DI+ VG + F G+IR
Sbjct: 60 TAGIVPYAGAIVLAKVCSITGRFVRCDIVAVGDVYLSGPFKGLIR 104
>gi|339234287|ref|XP_003382260.1| 3'-5' exoribonuclease CSL4-like protein [Trichinella spiralis]
gi|316978751|gb|EFV61686.1| 3'-5' exoribonuclease CSL4-like protein [Trichinella spiralis]
Length = 568
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 23 VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPV-PEPGSVVI 81
+++G G YVA +G +ASL G L+ L+ D VEV + + P P +VV
Sbjct: 381 IRSGYGCYVA--HGYYFASLAGQLK-LTKENDCA----VVEVVRENSSTSILPSPQAVVT 433
Query: 82 ARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
RVT V + A I+ V + F GIIR
Sbjct: 434 CRVTGVANKYAKCTILMVHNNILPYPFVGIIR 465
>gi|324523789|gb|ADY48303.1| 3'-5' exoribonuclease CSL4 [Ascaris suum]
Length = 253
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 11 VTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-- 67
V PG+ L +E ++AG G Y + G +YASL G++ L P + Q TVEV +
Sbjct: 20 VFPGDRLFPISERLRAGIGTY--ELFGHIYASLFGVVHML-PATEGTKQVTTVEVRRNNE 76
Query: 68 -KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ VP G + A+V + A I+CV A + +FS ++R
Sbjct: 77 IEQRHIVPYIGCIATAKVQNIGPNYAKCGIVCVDASMLAHEFSALLR 123
>gi|408396471|gb|EKJ75628.1| hypothetical protein FPSE_04129 [Fusarium pseudograminearum CS3096]
Length = 208
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSP--------------DQ 58
PG+VLG T+ G G +V + G V +SL G + T++P P D+
Sbjct: 12 PGKVLGPVTKFAPGAGTHV--YEGNVVSSLLGQV-TVTPAAKGPGPQKRLNKITAPTSDE 68
Query: 59 RPTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ V+ H + +P+ ++V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 69 LAAISVSRHGRKREILPDVDNIVLARVLRLMPKQAIVVIQQVGDTVLQTEWQGLIR 124
>gi|302911154|ref|XP_003050430.1| hypothetical protein NECHADRAFT_96196 [Nectria haematococca mpVI
77-13-4]
gi|256731367|gb|EEU44717.1| hypothetical protein NECHADRAFT_96196 [Nectria haematococca mpVI
77-13-4]
Length = 208
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDS-PDQR------------ 59
PG+VLG T+ G G +V + G V +SL G + + P + P +R
Sbjct: 12 PGKVLGPVTKFAPGPGTHV--YEGNVVSSLLGKVTVIQPAKAAGPAKRLNKITAPTTEEL 69
Query: 60 PTVEVTGH-KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
TV V+ H + +P+ ++V+ARV ++M + A I VG + ++ G+IR
Sbjct: 70 ATVSVSRHGRKREVLPDVDNIVLARVLRLMPKQAIVVIQQVGDTVLETEWQGVIR 124
>gi|387015836|gb|AFJ50037.1| 3'-5' exoribonuclease CSL4-like protein [Crotalus adamanteus]
Length = 194
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G ++ASL G S P + V
Sbjct: 9 PGERLCSLEEGTPGNGTYT--RHGSIFASLAGRFVKKS----ENGTLPVISVMRDVESQL 62
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V + +R A I+ VG+ ++ F G IR
Sbjct: 63 LPDVGAIVTCKVCSINSRFAKVHILYVGSTPLKSPFRGTIR 103
>gi|170594968|ref|XP_001902194.1| 3'-5' exoribonuclease CSL4 homolog [Brugia malayi]
gi|158590258|gb|EDP28956.1| 3'-5' exoribonuclease CSL4 homolog, putative [Brugia malayi]
Length = 216
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 11 VTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLR---TLSPPPDSPDQRPTVEVTG 66
V PG+ L +E +KAG G Y + G +YASL G + T+ ++ E
Sbjct: 24 VIPGDRLFPISEQLKAGIGTY--ELFGHIYASLAGTMHMYTTVERDKETKIVEVRRESEK 81
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
K H +P G +V A+V + R A I CV + +F+G++R
Sbjct: 82 EKRH-VMPYVGCIVTAKVQNIGQRFAKCTIHCVECSVLSHEFNGVLR 127
>gi|195472096|ref|XP_002088338.1| Csl4 [Drosophila yakuba]
gi|194174439|gb|EDW88050.1| Csl4 [Drosophila yakuba]
Length = 203
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 EEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
++E V+ PGE L + + + G G + + NG +YAS +G++ +S + V
Sbjct: 4 QDETVVCLPGERLCRTEDNIVLGIGTF--EQNGYIYASKSGIVHI----EESGENCQVVS 57
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V H +P G VV ARV + I CV + + G++R
Sbjct: 58 VHKPGFHLTIPATGDVVTARVLVTTPKFVKCAIFCVRNVLLESSYRGLLR 107
>gi|147921606|ref|YP_684577.1| hypothetical protein LRC269 [Methanocella arvoryzae MRE50]
gi|110619973|emb|CAJ35251.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 187
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E V PG+++G + E G G Y + NG +YA +TG + + ++ +E
Sbjct: 3 ENDFVVPGDLVGTSEEYLPGSGTY--EENGNIYADITGKIAI-----NKKERAVYIEPAV 55
Query: 67 HKAHGPVPEPGSVVIARVTKVMTRMA 92
H PVP G +VI RVT + +A
Sbjct: 56 HAP--PVPREGDIVIGRVTDIKGSVA 79
>gi|169779469|ref|XP_001824199.1| exosome complex subunit Csl4 [Aspergillus oryzae RIB40]
gi|83772938|dbj|BAE63066.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870328|gb|EIT79513.1| exosomal 3'-5' exoribonuclease complex, subunit ski4 [Aspergillus
oryzae 3.042]
Length = 257
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 32/120 (26%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG------------------LLRTLSP 51
L PG+ LG T AG G +V + N VYAS+ G + R++
Sbjct: 8 LAIPGQRLGPVTSYSAGPGTHVQQSN--VYASIAGPVVVEPAQPGSKGKATLSVSRSIRA 65
Query: 52 PPDSPDQRPTVEVTGHK--AHGPVPEP----------GSVVIARVTKVMTRMASADIMCV 99
P +P G K A P+P SVV+ARVT+V R A+ I+ V
Sbjct: 66 PGTGNASKPVTTAPGAKPAATSATPKPKVKYNTLPAVDSVVLARVTRVQKRQATVSILVV 125
>gi|225711060|gb|ACO11376.1| 3-5 exoribonuclease CSL4 homolog [Caligus rogercresseyi]
Length = 220
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 10 LVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPP------DSPDQRPTV 62
+V PG L A E +G G Y NG +Y+SL+G +R L + R TV
Sbjct: 6 IVVPGMRLCVADENNVSGPGTY--SQNGYIYSSLSGTMRLLREKKKKEKDMSKSEVRITV 63
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V + +P G +V +V V R A I+CV + E F G+IR
Sbjct: 64 -VPPCSVYSEIPSLGDIVTVKVIAVNPRFAKVQIICVRDSPLSEPFRGLIR 113
>gi|38048131|gb|AAR09968.1| similar to Drosophila melanogaster CG6249, partial [Drosophila
yakuba]
Length = 200
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 EEEMVLVTPGEVLGKATE-VKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVE 63
++E V+ PGE L + + + G G + + NG +YAS +G++ +S + V
Sbjct: 1 QDETVVCLPGERLCRTEDNIVLGIGTF--EQNGYIYASKSGIVHI----EESGENCQVVS 54
Query: 64 VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
V H +P G VV ARV + I CV + + G++R
Sbjct: 55 VHKPGFHLTIPATGDVVTARVLVTTPKFVKCAIFCVRNVLLESSYRGLLR 104
>gi|412986845|emb|CCO15271.1| predicted protein [Bathycoccus prasinos]
Length = 243
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 63 EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
E+ +PE VV A+ TK+ +MA D++ K ++ +FSGI+R
Sbjct: 103 EIEDENVRVRLPEVNDVVFAKCTKIREKMAQFDVLVCDGKPLKTEFSGIVR 153
>gi|429328527|gb|AFZ80287.1| hypothetical protein BEWA_031400 [Babesia equi]
Length = 183
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
L PG LG +++ G YV + ++Y+S+ G +S P+ +VE KA
Sbjct: 5 LTYPGTCLGPVSDLVPGNNTYV--RDSMIYSSVLGNC-IISRDPNVEKGTVSVETNQIKA 61
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
P G+VV+A+VTK+ + +++ V + +++ + G++
Sbjct: 62 ----PYVGAVVVAQVTKLHRKKLECNVVSVDGRVLKDPYKGVL 100
>gi|225709852|gb|ACO10772.1| 3-5 exoribonuclease CSL4 homolog [Caligus rogercresseyi]
Length = 222
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 10 LVTPGEVLGKATEVK-AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVT--- 65
+V PG L A E +G G Y NG +Y+SL+G +R L EV
Sbjct: 6 IVVPGMRLCVADENNVSGPGTY--SQNGYIYSSLSGTMRLLREKKKKEKDMSKSEVRITV 63
Query: 66 --GHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ +P G +V +V V R A I+CV + E F G+IR
Sbjct: 64 VPPCSVYSEIPSLGDIVTVKVIAVNPRFAKVQIICVRDSPLSEPFRGLIR 113
>gi|238500117|ref|XP_002381293.1| exosome complex subunit Csl4, putative [Aspergillus flavus
NRRL3357]
gi|220693046|gb|EED49392.1| exosome complex subunit Csl4, putative [Aspergillus flavus
NRRL3357]
Length = 257
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 32/120 (26%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG------------------LLRTLSP 51
L PG+ LG T AG G +V + N VYAS+ G + R++
Sbjct: 8 LAIPGQRLGPVTSYSAGPGTHVQQSN--VYASIAGPVVVEPAHPGSKGKATLSVSRSIRA 65
Query: 52 PPDSPDQRPTVEVTGHK--AHGPVPEP----------GSVVIARVTKVMTRMASADIMCV 99
P +P G K A P+P SVV+ARVT+V R A+ I+ V
Sbjct: 66 PGTGNASKPVTTAPGAKPAATSATPKPKVKYNTLPAVDSVVLARVTRVQKRQATVSILVV 125
>gi|444708223|gb|ELW49315.1| Exosome complex component CSL4 [Tupaia chinensis]
Length = 126
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 26 GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85
G G Y +G +++SL G L S P + VT +P+ G++V +V+
Sbjct: 14 GSGTYT--RHGYIFSSLAGSLTKSS----ENGALPVISVTRETESQLLPDVGAIVTCKVS 67
Query: 86 KVMTRMASADIMCVGAKSVREKFSGIIR 113
+ +R A I+ VG+ ++ F G IR
Sbjct: 68 SINSRFAKVHILYVGSTPLKNSFRGTIR 95
>gi|452985490|gb|EME85247.1| hypothetical protein MYCFIDRAFT_46706 [Pseudocercospora fijiensis
CIRAD86]
Length = 197
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PG+ LG T G+ ++ K+N + AS+ G + + P + PT+ + H+ GP
Sbjct: 7 PGQSLGPNTSNNLGEATHIHKNN--LCASIAGPIHS-KPSTSKTSKAPTLSI--HRTTGP 61
Query: 73 -VPEPGSVVIARVTKVMTRMAS 93
+P G+ ++ R+TK TR A+
Sbjct: 62 LLPSVGTKILGRITKTQTRQAN 83
>gi|375082270|ref|ZP_09729336.1| exosome complex RNA-binding protein Csl4 [Thermococcus litoralis
DSM 5473]
gi|374743027|gb|EHR79399.1| exosome complex RNA-binding protein Csl4 [Thermococcus litoralis
DSM 5473]
Length = 199
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 32/122 (26%)
Query: 3 VKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLR--------TLSPPPD 54
VK+ ++VL PG+ LG E G+G + + NG +YA+ G +R ++ P D
Sbjct: 9 VKDGDIVL--PGDYLGVIEEFLPGEG--IIEENGELYAARAGRVRINPEKIEISVEPLTD 64
Query: 55 SPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCV-GAKSVRE----KFS 109
+P P+P+ G VVIARV +V + A ++ + G K RE K +
Sbjct: 65 TP---------------PLPQVGDVVIARVIEVKPQAAIVQLLRIEGRKGYREIATSKLA 109
Query: 110 GI 111
GI
Sbjct: 110 GI 111
>gi|282164175|ref|YP_003356560.1| putative 3'-5' exoribonuclease [Methanocella paludicola SANAE]
gi|282156489|dbj|BAI61577.1| putative 3'-5' exoribonuclease [Methanocella paludicola SANAE]
Length = 188
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
V PG+++G + E GKG Y + N +YA +TG L T S P +
Sbjct: 7 FVIPGDMIGTSEEFLPGKGTYEDRGN--IYAIMTGRL-TYDKKERSVSVDPVTNIP---- 59
Query: 70 HGPVPEPGSVVIARVTKVMTRMA 92
P P+ G +VI RVT + +A
Sbjct: 60 --PTPKEGDIVIGRVTDIKGSVA 80
>gi|212223523|ref|YP_002306759.1| exosome complex RNA-binding protein Csl4 [Thermococcus onnurineus
NA1]
gi|212008480|gb|ACJ15862.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 195
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LV PG+ LG E G+G V + NG +YA G +R PD R + +
Sbjct: 12 LVLPGDYLGVIEEYLPGEG--VKEENGELYAIRAGKVRI------DPD-RMEISIEPVTD 62
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE----KFSGI 111
P+P+ G VVIA+V +V + A ++ + ++ RE K +GI
Sbjct: 63 TPPLPQIGDVVIAKVIEVKPQAAIVQLVKIEGRNDREIATSKLAGI 108
>gi|256071809|ref|XP_002572231.1| 3'-5' exonuclease [Schistosoma mansoni]
gi|350644785|emb|CCD60492.1| 3'-5' exoribonuclease csl4-related [Schistosoma mansoni]
Length = 257
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 10 LVTPGEVLGK-ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+V PG+V+ K+G Y N + +S G ++ S D T V K
Sbjct: 6 VVVPGDVISPLDINKKSGPSTYCCSGN--ILSSAFGYVKEES----HTDGTKTFSVAPLK 59
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
G VP GS+V+A+V+ + R DI+ +G + F G+IR
Sbjct: 60 TPGIVPYTGSIVLAKVSSITRRFVRCDIVAIGEVYLAGPFKGLIR 104
>gi|242398483|ref|YP_002993907.1| RNA-binding protein, containing S1 domain [Thermococcus sibiricus
MM 739]
gi|242264876|gb|ACS89558.1| RNA-binding protein, containing S1 domain [Thermococcus sibiricus
MM 739]
Length = 199
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 30/115 (26%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLR--------TLSPPPDSPDQRPT 61
LV PG+ LG E G+G V + NG +YA+ G ++ ++ P D P
Sbjct: 14 LVLPGDYLGVIEEFLPGEG--VIEENGELYAARMGRVKIDLEKIEISVEPVTDVP----- 66
Query: 62 VEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCV-GAKSVRE----KFSGI 111
P+P+ G +VIARV +V ++ A +++ + G K RE K +GI
Sbjct: 67 ----------PLPQVGDIVIARVLEVKSQAAIVELLKIEGRKGYREIATSKLAGI 111
>gi|358374130|dbj|GAA90724.1| 3'-5' exoribonuclease [Aspergillus kawachii IFO 4308]
Length = 251
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 26/114 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASL-----------------------TGLL 46
L PG+ LG AG G +V N +YAS+ TG
Sbjct: 8 LAIPGQRLGSIASYAAGPGTHV--QNATIYASIAGPVVVDQAQPSSKAKLILSVSRTGPK 65
Query: 47 RTLSPPPDS-PDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCV 99
+ +PPP + +P + +P SVV+ARVT+V R A+ I+ V
Sbjct: 66 KAAAPPPSTKASAKPATTGKPKLRYNTLPAVDSVVLARVTRVQKRQATVSILVV 119
>gi|213404568|ref|XP_002173056.1| exosome subunit Csl4 [Schizosaccharomyces japonicus yFS275]
gi|212001103|gb|EEB06763.1| exosome subunit Csl4 [Schizosaccharomyces japonicus yFS275]
Length = 181
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
V+V PG+VL + VK G+G V + + L L+ L P ++ V T +
Sbjct: 4 VVVVPGQVLARG--VKGGEGTAV-RGDYL----LSTRLGVYDP------EKHIVSHTNEQ 50
Query: 69 AHGPV-PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
PV P+ GS+V+ +VT++ R AS + V +E+F G+I
Sbjct: 51 VEQPVLPKVGSIVLGQVTRISVRQASIKMTVVDNVCAKEEFQGVI 95
>gi|358401392|gb|EHK50698.1| hypothetical protein TRIATDRAFT_279999 [Trichoderma atroviride IMI
206040]
Length = 208
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPP-PDSPDQR------PTV 62
L PG +LG A + +G G ++ + G + +SL G + +P P +R P+V
Sbjct: 9 LAIPGTILGPAGKYVSGPGTHI--YGGNIVSSLLGNVNVTAPAKAPGPTKRLNKITAPSV 66
Query: 63 E-------VTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
E + + +P+ G+ V+ARV ++M + A I VG ++ ++ G+IR
Sbjct: 67 EELSTISVIRRGRKREVLPDVGNTVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIR 124
>gi|330795128|ref|XP_003285627.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
gi|325084449|gb|EGC37877.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
Length = 341
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LV PG+++ + E G G + HNG + L+ ++ D D+ +V+ +
Sbjct: 56 LVIPGQIISREGEYLKGHGTF---HNG------SNLIASVCGTLDKVDRLISVKALKSRY 106
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADI 96
HG V G +++ R+T++ ++ D+
Sbjct: 107 HGEV---GDIIVGRITEISSKRWKVDV 130
>gi|255953285|ref|XP_002567395.1| Pc21g03310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589106|emb|CAP95228.1| Pc21g03310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 243
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTG---------------LLRTLS--PP 52
+ PG+ LG + AG G +V +YAS+ G LR P
Sbjct: 7 IAIPGQRLGPLSTYSAGPGTHV--QQSFIYASIAGPVVADPAQPKSQTRPTLRVSRGIPS 64
Query: 53 PDSPDQRPTV-EVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCV 99
D P V VT + +P S+V+ARVT+V R A+ I+ V
Sbjct: 65 KDQASSNPAVPAVTSKPRYNTLPAVDSIVLARVTRVQKRQATVSILVV 112
>gi|358055298|dbj|GAA98685.1| hypothetical protein E5Q_05373 [Mixia osmundae IAM 14324]
Length = 189
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 13 PGEVL-GKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHG 71
PG+ L G T++++G G Y G V ++L G +R S TV V G +A
Sbjct: 10 PGQQLTGAPTKLQSGDGTYT--RGGQVISALAGPVRHDSK---------TVSV-GREAQA 57
Query: 72 PV-PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+ PE G +VI VT++ A+ I VG++ G+IR
Sbjct: 58 TLLPEVGQIVIGTVTRIARAQATLAIQVVGSRLTVRDIQGVIR 100
>gi|367038801|ref|XP_003649781.1| hypothetical protein THITE_2074474 [Thielavia terrestris NRRL 8126]
gi|346997042|gb|AEO63445.1| hypothetical protein THITE_2074474 [Thielavia terrestris NRRL 8126]
Length = 230
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 35/137 (25%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLL------RTLSPPPDSPDQR---- 59
LV PG++LG A+ G G ++ H +Y+SL G + R +P P +R
Sbjct: 12 LVIPGQLLGPASRFLPGPGTHL--HESNLYSSLLGQVHITQPARRPAPAQPGPAKRLTKI 69
Query: 60 -----------PTVEVTGH------------KAHGPVPEPGSVVIARVTKVMTRMASADI 96
PT+ V K +PE G++V+ RV ++ R A I
Sbjct: 70 TPAPAPAPAELPTISVAPARAAGAGAGAGAGKRREVLPEVGNIVLCRVIRITPRQAVVAI 129
Query: 97 MCVGAKSVREKFSGIIR 113
+ G + + G+IR
Sbjct: 130 LVCGDSVLEADWQGLIR 146
>gi|403376905|gb|EJY88440.1| EXOSC1 domain containing protein [Oxytricha trifallax]
Length = 224
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPD-----------SP 56
M V G++LG + +GKG Y VYAS TG + D S
Sbjct: 1 MEKVHAGKLLGSTEDCISGKGTYTYLKG--VYASQTGFVNIDKSQGDKSIISVERTNQSE 58
Query: 57 DQRPTVEVTGHKAHGPV---PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+ + + T V P+ G++V AR+T+V A+I+ + + ++ F GI+
Sbjct: 59 KKNDSSQQTQSNIESNVFGQPKIGNLVYARITRVEPNFVKAEILAIENQPLKTVFQGIL 117
>gi|268325874|emb|CBH39462.1| hypothetical protein BSM_29410 [uncultured archaeon]
Length = 186
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV 64
E EMVL PG+ LG + E G G Y G +YA G + S + + V
Sbjct: 2 ESEMVL--PGDFLGTSEEYILGDGVY--DDEGNLYALYIGDV--------SISDKRVISV 49
Query: 65 TGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIELLMH 124
PV + G VVI ++ + +A I CV K RE + + + I + +
Sbjct: 50 VPKVETPPVIKDGDVVIGQIGDIKDTVAVVSIACVEGKENRE-IAAVNQGIIH----ISN 104
Query: 125 LLYGYLGSCKMQLNY 139
+ GY+ + + Y
Sbjct: 105 VRNGYVNELRQEFGY 119
>gi|15965348|ref|NP_385701.1| hypothetical protein SMc01198 [Sinorhizobium meliloti 1021]
gi|15074528|emb|CAC46174.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
Length = 502
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E ++ PGE+LGKA + A + L + L + L PPD + T+ G
Sbjct: 38 EALVGRPGEILGKAELMDAAWSGRAVEEGNLT-VQIAQLRKMLGAPPDGGEWIATIPRVG 96
Query: 67 HKAHGPVPEPG 77
++ GPV + G
Sbjct: 97 YRFTGPVEKAG 107
>gi|384529346|ref|YP_005713434.1| adenylate cyclase [Sinorhizobium meliloti BL225C]
gi|384536404|ref|YP_005720489.1| hypothetical protein SM11_chr1965 [Sinorhizobium meliloti SM11]
gi|433613371|ref|YP_007190169.1| putative integral membrane protein [Sinorhizobium meliloti GR4]
gi|333811522|gb|AEG04191.1| Adenylate cyclase [Sinorhizobium meliloti BL225C]
gi|336033296|gb|AEH79228.1| hypothetical protein SM11_chr1965 [Sinorhizobium meliloti SM11]
gi|429551561|gb|AGA06570.1| putative integral membrane protein [Sinorhizobium meliloti GR4]
Length = 505
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E ++ PGE+LGKA + A + L + L + L PPD + T+ G
Sbjct: 41 EALVGRPGEILGKAELMDAAWSGRAVEEGNLT-VQIAQLRKMLGAPPDGGEWIATIPRVG 99
Query: 67 HKAHGPVPEPG 77
++ GPV + G
Sbjct: 100 YRFTGPVEKAG 110
>gi|290992701|ref|XP_002678972.1| predicted protein [Naegleria gruberi]
gi|284092587|gb|EFC46228.1| predicted protein [Naegleria gruberi]
Length = 216
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR------ 59
E V PG+ +G+ ++G+G YV + ++AS+ G ++ +S D +
Sbjct: 8 ETQQRVVPGQRIGQTDTYQSGRGTYV--KDNRIHASVVGSVK-ISNHADIDESTPSSSNN 64
Query: 60 ----------PTVEVTGHKAHGP-VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKF 108
P + V VP SVV A+V K A DI+CV K V +
Sbjct: 65 SSSTSEVASLPYIHVIQENNQETIVPNILSVVTAKVIKTTKSFAKVDILCVDGKPVTKSG 124
Query: 109 SGI 111
S I
Sbjct: 125 SAI 127
>gi|116197969|ref|XP_001224796.1| hypothetical protein CHGG_07140 [Chaetomium globosum CBS 148.51]
gi|88178419|gb|EAQ85887.1| hypothetical protein CHGG_07140 [Chaetomium globosum CBS 148.51]
Length = 200
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQR 59
L PG++LG A+ + G G ++ HN +YASL G + P P QR
Sbjct: 11 LAIPGQLLGPASRYQPGPGTHL--HNANLYASLLGHVHITQPAQQPPRQR 58
>gi|71032387|ref|XP_765835.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352792|gb|EAN33552.1| hypothetical protein TP01_0308 [Theileria parva]
Length = 178
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M +V PG +LG ++ + YV + ++Y+S+ G S P E++
Sbjct: 1 MSVVLPGMLLGTVSDYVPLRNVYV--KDSIIYSSVLG----------SQHISPNNEISVE 48
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKF 108
VP G+VV+A++++V A I+ V +++++++
Sbjct: 49 SGCVRVPYVGAVVVAQISRVHINKADCHIIAVNGRTLKDQY 89
>gi|430811223|emb|CCJ31317.1| unnamed protein product [Pneumocystis jirovecii]
Length = 312
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
+VTPGE + + G G YV N VYAS+ G ++ ++ + V K+
Sbjct: 45 VVTPGEFITNDPQFMRGHGTYVRDKN-TVYASVVGTVQRVN---------KLISVKPLKS 94
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADI 96
+PE G +VI R+ KV + DI
Sbjct: 95 R-YLPEIGDLVIGRIVKVGNKRWKVDI 120
>gi|402216788|gb|EJT96871.1| exosome complex exonuclease rrp4 [Dacryopinax sp. DJM-731 SS1]
Length = 273
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 9 VLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHK 68
+L +PGEV+ A E G G +V +G V ASL+G + + ++ +V +
Sbjct: 1 MLTSPGEVITSAMEFMRGHGTFV--EDGSVVASLSGTIERV-------NKLVSVRALQTR 51
Query: 69 AHGPVPEPGSVVIARVTKVMTRMASADI 96
HG V G +V+ R+T+V D+
Sbjct: 52 YHGEV---GDLVVGRITEVQAARWKVDV 76
>gi|407720540|ref|YP_006840202.1| adenylate cyclase [Sinorhizobium meliloti Rm41]
gi|407318772|emb|CCM67376.1| adenylate cyclase [Sinorhizobium meliloti Rm41]
Length = 505
Score = 35.8 bits (81), Expect = 6.7, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E ++ PGE+LGKA + A + L + L + L PPD + T+ G
Sbjct: 41 EALVGRPGEILGKAELMDAAWPGRAVEEGNLT-VQIAQLRKMLGAPPDGGEWIATIPRVG 99
Query: 67 HKAHGPVPEPG 77
++ GPV + G
Sbjct: 100 YRFTGPVEKAG 110
>gi|334316231|ref|YP_004548850.1| adenylate cyclase [Sinorhizobium meliloti AK83]
gi|334095225|gb|AEG53236.1| Adenylate cyclase [Sinorhizobium meliloti AK83]
Length = 505
Score = 35.8 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66
E ++ PGE+LGKA + A + L + L + L PPD + T+ G
Sbjct: 41 EALVGRPGEILGKAELMDAAWPGRAVEEGNLT-VQIAQLRKMLGAPPDGGEWIATIPRVG 99
Query: 67 HKAHGPVPEPG 77
++ GPV + G
Sbjct: 100 YRFTGPVEKAG 110
>gi|425767161|gb|EKV05739.1| Exosome complex subunit Csl4, putative [Penicillium digitatum Pd1]
gi|425780697|gb|EKV18699.1| Exosome complex subunit Csl4, putative [Penicillium digitatum
PHI26]
Length = 246
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEV---TG 66
+ PG+ LG + AG G +V +YAS+ G + P S RPT+ V T
Sbjct: 7 IAIPGQRLGPLSTYCAGPGTHV--QQSFIYASIAGPVVADPAQPKS-QTRPTIRVLRVTS 63
Query: 67 HKAHG-----------PVPEP--------GSVVIARVTKVMTRMASADIMCV 99
KA P+P S+V+ARVT+V R A+ I+ V
Sbjct: 64 PKAQAGSNPAVPAASSTTPKPRYNTLPAVDSIVLARVTRVQKRQATVSILVV 115
>gi|399216674|emb|CCF73361.1| unnamed protein product [Babesia microti strain RI]
Length = 146
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 75 EPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIE 120
E GSVV+AR+TK+ DI+C+G R + G+I + E
Sbjct: 10 EVGSVVMARITKLYPDKVECDILCIGDVPSRSRCKGVIALSDIFTE 55
>gi|317034769|ref|XP_001401124.2| exosome complex subunit Csl4 [Aspergillus niger CBS 513.88]
gi|350639558|gb|EHA27912.1| hypothetical protein ASPNIDRAFT_184867 [Aspergillus niger ATCC
1015]
Length = 251
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 26/114 (22%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQ----------- 58
L PG+ LG AG G +V N +YAS+ G + P S +
Sbjct: 8 LAIPGQRLGSIASYAAGPGTHV--QNATIYASIAGPVVVDQAQPSSKAKLILSVSRTGPK 65
Query: 59 -----RPTVEVTGHKAH--------GPVPEPGSVVIARVTKVMTRMASADIMCV 99
P+ + + + A+ +P SVV+ARVT+V R A+ I+ V
Sbjct: 66 KAAAPAPSTKASANPANTGKPKLRYNTLPAVDSVVLARVTRVQKRQATVSILVV 119
>gi|383320160|ref|YP_005381001.1| RNA-binding protein [Methanocella conradii HZ254]
gi|379321530|gb|AFD00483.1| putative RNA-binding protein [Methanocella conradii HZ254]
Length = 187
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 25/94 (26%)
Query: 7 EMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLL------RTLSPPP--DSPDQ 58
E V PG+++G + E GKG Y K N +YA TG + R++S P ++P
Sbjct: 3 EGEFVIPGDMIGTSEEFIPGKGTYEDKGN--IYAVTTGRVVYNKKERSVSVEPVTNTP-- 58
Query: 59 RPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMA 92
P P G +VI RVT + +A
Sbjct: 59 -------------PTPREGDIVIGRVTDIKGSVA 79
>gi|121714042|ref|XP_001274632.1| 3'-5' exoribonuclease (Csl4), putative [Aspergillus clavatus NRRL
1]
gi|119402785|gb|EAW13206.1| 3'-5' exoribonuclease (Csl4), putative [Aspergillus clavatus NRRL
1]
Length = 253
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 32/118 (27%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLT-------------------------- 43
L PG+ LG T AG G +V N +YAS+
Sbjct: 8 LAIPGQQLGSITSYFAGPGTHV--KNANIYASIAGPVIIEQTQPSSKVKAIVSVSRNLNT 65
Query: 44 --GLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCV 99
GL+ +P P +P + T + +P S+V+ARVT+V R A+ I+ V
Sbjct: 66 QPGLVAKPTPAPSTPAK--TTAAKPKLRYNTLPAVDSIVLARVTRVQKRQATVSILVV 121
>gi|57641104|ref|YP_183582.1| exosome complex RNA-binding protein Csl4 [Thermococcus kodakarensis
KOD1]
gi|57159428|dbj|BAD85358.1| RNA-binding protein, containing S1 domain [Thermococcus
kodakarensis KOD1]
Length = 198
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LV PG+ LG E G G V + NG +YA+ G +R DS +VE
Sbjct: 12 LVLPGDYLGVIEEFLPGDG--VREENGELYATRAGKVRI-----DSDKMEISVEPVTDVP 64
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCV-GAKSVRE----KFSGI 111
P+P G VVI RV +V + I+ + G ++ RE K +GI
Sbjct: 65 --PLPRVGDVVIGRVVEVKPQAVIVQIISIEGRENDREIATSKLAGI 109
>gi|395501798|ref|XP_003755277.1| PREDICTED: exosome complex component CSL4 [Sarcophilus harrisii]
Length = 307
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 52 PPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGI 111
P P P V VT +P+ G++V +V+ + +R A I+ VG+ ++ F G
Sbjct: 155 PRPKPAALPVVSVTRETESQMLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGT 214
Query: 112 IR 113
IR
Sbjct: 215 IR 216
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,233,704,139
Number of Sequences: 23463169
Number of extensions: 85866065
Number of successful extensions: 275990
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 275780
Number of HSP's gapped (non-prelim): 263
length of query: 141
length of database: 8,064,228,071
effective HSP length: 105
effective length of query: 36
effective length of database: 9,895,562,622
effective search space: 356240254392
effective search space used: 356240254392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)