BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032397
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DAA6|EXOS1_MOUSE Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=2 SV=1
Length = 195
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G+VV +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIR 104
>sp|Q9Y3B2|EXOS1_HUMAN Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1
Length = 195
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 13 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGP 72
PGE L E G G Y +G +++SL G L S P V V
Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQL 63
Query: 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113
+P+ G++V +V+ + +R A I+ VG+ ++ F G IR
Sbjct: 64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIR 104
>sp|O59821|CSL4_SCHPO Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=csl4 PE=3 SV=2
Length = 181
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67
M LV PG+V+ + A G K + ++ TG+ P +S VE T
Sbjct: 1 MNLVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA- 52
Query: 68 KAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGII 112
+P GS+V+ARV+++ R A+ +I V +++F G+I
Sbjct: 53 ----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVI 93
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVT 65
E LV PGEVL E +G+G + K NG + +SL GL+ + + V
Sbjct: 5 ENKDLVIPGEVLA-DDEYYSGRGTF--KENGKICSSLMGLVSL---------RNKKIRVI 52
Query: 66 GHKAHGPVPEPGSVVIARVTKVMTRMASADI 96
K+ VP+ G VVI ++ V M DI
Sbjct: 53 PLKSK-YVPKKGDVVIGKIKDVRFSMWDVDI 82
>sp|Q1R1E5|DXS_CHRSD 1-deoxy-D-xylulose-5-phosphate synthase OS=Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
13768) GN=dxs PE=3 SV=1
Length = 653
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 26 GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV- 84
G+G A+ + + Y ++T L +T S PP + R T P P+P V
Sbjct: 291 GRGFRPAEADPIGYHAITKLEKTTSEPPPKKEPRSPNAATAEPEAQPKPQPKPRKYCNVF 350
Query: 85 TKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIE 120
+ + MA+ D +G + S +IRF Y E
Sbjct: 351 GEWICDMAAVDARLIGITPAMREGSDLIRFSREYPE 386
>sp|A6H0G8|NHAA_FLAPJ Na(+)/H(+) antiporter NhaA OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=nhaA PE=3 SV=1
Length = 384
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 30 YVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVP 74
Y H+G V+A++TG+L + P + D R T + H H PV
Sbjct: 210 YFMLHSG-VHATITGVLLAFAIPFGNGDSRSTSYILQHFLHKPVA 253
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 1 MVVKEEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRP 60
+ V+ +E+VL PG +L K G+G Y K NG +Y+S+TGL+ S +
Sbjct: 2 IFVENKEIVL--PGSLL-TDNNYKLGRGTY--KENGKIYSSITGLVYFESEQIKVIPLKD 56
Query: 61 TVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADI 96
T P G +VI RVT S DI
Sbjct: 57 TYS----------PNYGDLVIGRVTGSSYSSWSIDI 82
>sp|Q5RAJ8|TIM50_PONAB Mitochondrial import inner membrane translocase subunit TIM50
OS=Pongo abelii GN=TIMM50 PE=2 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 25 AGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH-KAHGPVPEPGSVVIAR 83
A + +GL S R +PPP +PDQ + G KA GP +PGS +
Sbjct: 3 ASAAVFSRLRSGLRLGSRGLCTRLATPPPRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSY 62
Query: 84 VTKVMTRMA 92
KV +A
Sbjct: 63 AKKVALWLA 71
>sp|O94390|ATP7_SCHPO ATP synthase subunit d, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=atp7 PE=3 SV=3
Length = 175
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 20 ATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSV 79
A E KA +GA K+ LV A L L TL + RPT E+T VPE +
Sbjct: 96 AFEAKASEGAK--KNVELVKAELQNLSATLKNIEQA---RPTEEITIEDMKQAVPEIEKI 150
Query: 80 VIARVTK 86
V VTK
Sbjct: 151 VETMVTK 157
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp4 PE=3 SV=1
Length = 329
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 10 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKA 69
LVTPG+++ + G G Y +G +YAS+ G ++ ++ R
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYF--EDGGIYASVAGSVQRVNKLISVKPLRSKY------- 107
Query: 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAK 102
VPE G ++I ++ +V + DI GAK
Sbjct: 108 ---VPEIGDLIIGKIAEVQPKRWKVDI---GAK 134
>sp|Q9Y6X6|MYO16_HUMAN Unconventional myosin-XVI OS=Homo sapiens GN=MYO16 PE=1 SV=3
Length = 1858
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 50 SPPPDSPDQRPT-VEVTGHKAHGPVPEPGSVV 80
+PP D D P +E+ GH A P+PG V
Sbjct: 1400 APPGDEDDSEPVYIEMLGHAARPDSPDPGESV 1431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,278,574
Number of Sequences: 539616
Number of extensions: 2053732
Number of successful extensions: 6391
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6385
Number of HSP's gapped (non-prelim): 22
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)