Query 032397
Match_columns 141
No_of_seqs 106 out of 525
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_I 3'-5' exoribonuclease C 99.9 5.7E-29 1.9E-33 194.2 4.5 130 6-141 17-158 (209)
2 3m7n_A Putative uncharacterize 99.9 9.6E-28 3.3E-32 183.0 11.2 109 8-128 1-113 (179)
3 2nn6_H Exosome complex exonucl 99.9 1.1E-24 3.7E-29 178.6 7.1 125 5-141 36-171 (308)
4 2ba0_A Archeal exosome RNA bin 99.9 1.4E-23 4.7E-28 165.7 9.9 113 8-141 2-124 (229)
5 2je6_I RRP4, exosome complex R 99.9 7.5E-24 2.6E-28 169.3 7.3 117 5-141 13-143 (251)
6 2nn6_G Exosome complex exonucl 99.9 3.5E-23 1.2E-27 168.4 5.2 122 7-141 38-192 (289)
7 2z0s_A Probable exosome comple 99.9 2.9E-23 9.8E-28 164.2 3.0 115 8-141 9-136 (235)
8 2ja9_A Exosome complex exonucl 98.6 2.6E-08 8.8E-13 75.5 3.6 49 71-127 2-52 (175)
9 2k52_A Uncharacterized protein 97.7 0.0001 3.6E-09 48.1 6.3 38 74-119 3-40 (80)
10 2k4k_A GSP13, general stress p 97.2 0.00069 2.4E-08 48.3 6.2 38 74-119 5-42 (130)
11 1kl9_A Eukaryotic translation 97.1 0.0011 3.9E-08 50.0 6.7 41 71-119 10-52 (182)
12 2khj_A 30S ribosomal protein S 97.0 0.00048 1.7E-08 47.4 3.6 40 72-119 27-66 (109)
13 2cqo_A Nucleolar protein of 40 97.0 0.0011 3.7E-08 46.7 4.9 49 71-127 17-68 (119)
14 2a19_A EIF-2- alpha, eukaryoti 96.9 0.0015 5E-08 49.1 5.9 41 71-119 10-52 (175)
15 2khi_A 30S ribosomal protein S 96.9 0.0022 7.6E-08 44.5 6.0 51 60-118 14-64 (115)
16 2eqs_A ATP-dependent RNA helic 96.8 0.0025 8.4E-08 43.5 5.7 40 71-118 7-49 (103)
17 3aev_A Translation initiation 96.6 0.0043 1.5E-07 49.7 6.5 41 71-119 6-48 (275)
18 1luz_A Protein K3, protein K2; 96.6 0.0071 2.4E-07 40.2 6.4 39 72-119 7-48 (88)
19 3cw2_C Translation initiation 96.3 0.0031 1.1E-07 50.2 4.1 41 71-119 6-48 (266)
20 1q8k_A Eukaryotic translation 96.2 0.0042 1.4E-07 50.5 4.2 40 72-119 9-50 (308)
21 2c35_B Human RPB7, DNA-directe 94.8 0.064 2.2E-06 39.4 6.0 40 71-119 76-115 (172)
22 1go3_E DNA-directed RNA polyme 94.8 0.045 1.5E-06 40.6 5.3 39 72-119 77-115 (187)
23 1wi5_A RRP5 protein homolog; S 94.2 0.068 2.3E-06 36.9 4.8 37 73-117 18-55 (119)
24 2bh8_A 1B11; transcription, mo 93.4 0.08 2.7E-06 35.9 3.9 40 72-119 57-96 (101)
25 3v2d_0 50S ribosomal protein L 93.1 0.12 4.2E-06 34.4 4.2 60 3-67 23-84 (85)
26 1y14_B B16, RPB7, DNA-directed 93.1 0.21 7.2E-06 36.6 6.1 58 72-138 79-144 (171)
27 4aid_A Polyribonucleotide nucl 92.5 0.023 7.9E-07 51.1 0.0 40 72-119 633-672 (726)
28 4ayb_E DNA-directed RNA polyme 92.4 0.21 7.1E-06 36.8 5.2 39 72-119 77-115 (180)
29 3go5_A Multidomain protein wit 92.3 0.16 5.6E-06 40.5 4.8 38 74-119 150-188 (285)
30 3r8s_W 50S ribosomal protein L 91.5 0.2 6.7E-06 32.8 3.6 60 3-66 14-75 (76)
31 2zjr_T 50S ribosomal protein L 91.1 0.21 7.3E-06 33.7 3.6 60 3-67 23-84 (91)
32 2b8k_G B16, DNA-directed RNA p 89.7 0.42 1.5E-05 36.6 4.7 39 72-119 79-117 (215)
33 1hh2_P NUSA, N utilization sub 89.5 0.77 2.6E-05 37.7 6.4 39 71-118 129-167 (344)
34 3h0g_G DNA-directed RNA polyme 88.9 0.14 4.8E-06 37.7 1.4 58 71-137 79-144 (172)
35 3cdi_A Polynucleotide phosphor 88.5 0.086 2.9E-06 47.3 0.0 40 72-119 623-662 (723)
36 2bx2_L Ribonuclease E, RNAse E 87.2 0.69 2.4E-05 40.0 4.9 38 73-118 42-81 (517)
37 2ftc_O L27MT, MRP-L27, mitocho 87.1 0.64 2.2E-05 29.8 3.5 44 3-47 23-68 (69)
38 3bzc_A TEX; helix-turn-helix, 86.8 0.39 1.3E-05 43.5 3.2 38 74-119 652-689 (785)
39 2ckz_B C25, DNA-directed RNA p 86.4 0.91 3.1E-05 34.8 4.7 41 71-119 76-116 (218)
40 1e3p_A Guanosine pentaphosphat 86.3 0.11 3.8E-06 46.8 -0.6 38 72-117 663-700 (757)
41 2asb_A Transcription elongatio 85.4 0.97 3.3E-05 35.7 4.5 39 72-118 3-48 (251)
42 3psi_A Transcription elongatio 85.3 0.92 3.1E-05 43.0 5.0 41 71-119 897-937 (1219)
43 3ayh_B DNA-directed RNA polyme 85.3 1.1 3.9E-05 33.7 4.7 39 72-119 77-115 (203)
44 1k0r_A NUSA; two component arr 83.5 1.2 4.2E-05 36.9 4.5 40 71-118 125-171 (366)
45 1y71_A Kinase-associated prote 81.4 2.7 9.3E-05 29.9 5.0 46 74-119 8-83 (130)
46 3go5_A Multidomain protein wit 77.2 4.1 0.00014 32.3 5.5 36 74-118 4-39 (285)
47 2ja9_A Exosome complex exonucl 74.3 2.6 9E-05 31.2 3.4 42 71-113 49-90 (175)
48 3psf_A Transcription elongatio 72.5 0.75 2.6E-05 42.9 0.0 40 72-119 901-940 (1030)
49 2rf4_A DNA-directed RNA polyme 71.8 4.6 0.00016 30.6 4.3 40 72-119 125-164 (214)
50 3d0f_A Penicillin-binding 1 tr 65.5 14 0.00049 24.4 5.4 57 72-136 29-89 (106)
51 1yez_A MM1357; MAR30, autostru 64.5 9.5 0.00032 23.3 4.0 21 76-96 46-66 (68)
52 1yvc_A MRR5; structure, autost 62.3 11 0.00037 23.3 4.0 21 76-96 48-68 (70)
53 3bbo_X Ribosomal protein L27; 61.6 0.42 1.4E-05 36.3 -3.3 60 3-67 80-141 (198)
54 2ckk_A KIN17; beta barrel, rib 53.5 29 0.001 24.1 5.4 54 28-90 31-97 (127)
55 1a62_A RHO; transcription term 52.8 8.9 0.0003 26.9 2.6 46 60-105 77-125 (130)
56 2k52_A Uncharacterized protein 46.4 19 0.00066 22.4 3.3 24 73-96 45-68 (80)
57 2eqs_A ATP-dependent RNA helic 37.7 34 0.0011 22.4 3.5 24 73-96 60-83 (103)
58 2equ_A PHD finger protein 20-l 37.3 60 0.002 20.4 4.5 48 70-119 6-58 (74)
59 3l0o_A Transcription terminati 36.9 16 0.00056 30.8 2.1 46 60-105 84-132 (427)
60 2nn6_I 3'-5' exoribonuclease C 35.4 37 0.0013 25.4 3.8 23 74-96 136-160 (209)
61 2z0s_A Probable exosome comple 34.7 39 0.0013 25.6 3.9 24 73-96 114-138 (235)
62 1nh2_C Transcription initiatio 33.9 77 0.0026 20.5 4.6 30 74-103 31-66 (79)
63 2nn6_G Exosome complex exonucl 33.3 25 0.00084 28.0 2.6 20 72-91 169-188 (289)
64 3m7n_A Putative uncharacterize 31.2 38 0.0013 24.6 3.2 22 72-96 110-131 (179)
65 2ba0_A Archeal exosome RNA bin 30.4 57 0.002 24.7 4.2 24 73-96 102-126 (229)
66 2dig_A Lamin-B receptor; tudor 29.8 1E+02 0.0036 19.3 4.5 45 74-119 13-63 (68)
67 2l8d_A Lamin-B receptor; DNA b 29.8 1E+02 0.0036 19.2 4.6 44 74-118 10-59 (66)
68 1nvp_C Transcription initiatio 29.7 1.1E+02 0.0038 19.5 4.9 31 73-103 28-64 (76)
69 1uwv_A 23S rRNA (uracil-5-)-me 29.3 70 0.0024 26.0 4.8 25 76-100 46-70 (433)
70 2id0_A Exoribonuclease 2; RNAs 28.5 67 0.0023 28.0 4.8 37 74-118 556-595 (644)
71 2je6_I RRP4, exosome complex R 27.7 54 0.0018 25.2 3.6 19 73-91 121-139 (251)
72 2jjq_A Uncharacterized RNA met 26.8 76 0.0026 26.0 4.6 25 75-99 45-69 (425)
73 2a19_A EIF-2- alpha, eukaryoti 21.9 1.5E+02 0.0051 21.4 4.9 26 71-96 59-86 (175)
74 3prb_A FKBP-type peptidyl-prol 20.8 1.2E+02 0.0041 23.1 4.4 56 72-131 101-164 (231)
No 1
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.95 E-value=5.7e-29 Score=194.20 Aligned_cols=130 Identities=26% Similarity=0.394 Sum_probs=111.0
Q ss_pred cCCcEEecCCccCCCCCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEE
Q 032397 6 EEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVT 85 (141)
Q Consensus 6 ~~~~iVlPGd~L~~~~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig~V~ 85 (141)
+++.+|+|||+|+..++|.+|+|||+++ |+||||++|.+.... .++..++|+|.|.+...|.|++||+|+|+|+
T Consensus 17 ~~~~iV~PGd~l~~~~~~~~G~Gty~~~--g~I~Asv~G~v~~~~----~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~ 90 (209)
T 2nn6_I 17 PPVRYCIPGERLCNLEEGSPGSGTYTRH--GYIFSSLAGCLMKSS----ENGALPVVSVVRETESQLLPDVGAIVTCKVS 90 (209)
T ss_dssp ---CCCCTTCEEEETTTCCCSSSCEEET--TEEECCSCSCBCCCB----CTTSSBC-CBCCSCCCCCCCCTTCEEEEEEE
T ss_pred CCCcEEcCCCCCCCCCCeeecCCEEEEC--CEEEEEEEEEEEEec----cCCcccEEEEecCCCCcCCCCCCCEEEEEEE
Confidence 3567999999999888999999999999 999999999987521 1223567899998766799999999999999
Q ss_pred EeccceEEEEEEEecCeecccceeEEEeccccch----hhhHHHHhh-------hhccccccc-eeeC
Q 032397 86 KVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI----ELLMHLLYG-------YLGSCKMQL-NYSL 141 (141)
Q Consensus 86 ~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~----~v~~~~~f~-------~vis~gd~~-~y~l 141 (141)
++++.+|+|+|.++++++|..+|.|+||++|++. +++|.++|+ +|+|++|.. .|+|
T Consensus 91 ~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~L 158 (209)
T 2nn6_I 91 SINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLL 158 (209)
T ss_dssp EECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEE
T ss_pred EEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEE
Confidence 9999999999999999999999999999999996 358999995 899999875 4665
No 2
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.95 E-value=9.6e-28 Score=183.04 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=99.9
Q ss_pred CcEEecCCccCCCCCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEe
Q 032397 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (141)
Q Consensus 8 ~~iVlPGd~L~~~~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig~V~~v 87 (141)
|++|+|||+|+.+++|.+|+|||.++ |+|+||++|.+++. ++.++|.|.+..+|+|+ ||+|+|+|++|
T Consensus 1 m~iV~PGd~l~~~~~~~~G~Gty~~~--~~i~as~~G~v~~~---------~~~v~V~~~~~~~y~p~-GdiV~G~V~~V 68 (179)
T 3m7n_A 1 MRFVMPGDRIGSAEEYVKGEGVYEEG--GELFAAVAGKLIIK---------DRVAKVESISPIPEIVK-GDVVLGRVVDL 68 (179)
T ss_dssp CCEECTTCEEEETTTSEECTTEEEET--TEEEESSSEEEEEE---------TTEEEEEESSCCCCCCT-TCEEEEEEEEE
T ss_pred CeEEcCCCCCCCCCCEeccCCEEEeC--CEEEEEEEEEEEEe---------CCEEEEEECCCCcccCC-CCEEEEEEEEE
Confidence 57999999999989999999999999 99999999999983 57999999876789999 99999999999
Q ss_pred ccceEEEEEEEe--cCeecccceeEEEeccccch--hhhHHHHhh
Q 032397 88 MTRMASADIMCV--GAKSVREKFSGIIRFFIFYI--ELLMHLLYG 128 (141)
Q Consensus 88 ~~~~a~v~I~~v--~~~~l~~~~~G~Ir~~dvr~--~v~~~~~f~ 128 (141)
.+..|+|+|.++ +++++..++.|+||++|++. ..+|.++|+
T Consensus 69 ~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~ 113 (179)
T 3m7n_A 69 RNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVG 113 (179)
T ss_dssp CSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCC
T ss_pred eCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCC
Confidence 999999999999 66788899999999999997 357778874
No 3
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.90 E-value=1.1e-24 Score=178.60 Aligned_cols=125 Identities=21% Similarity=0.241 Sum_probs=95.8
Q ss_pred ccCCcEEecCCccCCCCCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEE
Q 032397 5 EEEMVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARV 84 (141)
Q Consensus 5 ~~~~~iVlPGd~L~~~~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig~V 84 (141)
..++.+|+|||+|+..++|.+|+|||.++ |+||||++|.+... ++.++|.|.+ .+|+|++||+|+|+|
T Consensus 36 ~~~~~iVlPGd~L~~~~~~~~G~Gty~~~--g~I~Asv~G~v~~~---------~~~vsV~p~~-~rY~P~vGDvViG~V 103 (308)
T 2nn6_H 36 DTKKHLVVPGDTITTDTGFMRGHGTYMGE--EKLIASVAGSVERV---------NKLICVKALK-TRYIGEVGDIVVGRI 103 (308)
T ss_dssp ----CBCCTTCBCCCCTTCCBCTTEEECS--SSEEECSSEEEEEE---------TTEEEEEESS-CCCCCCSSBCCCEEE
T ss_pred CCCCcEEeCCCCCCCCCCEeecCCeEEEC--CEEEEEEEEEEEec---------CCEEEEeeCC-CccCCCCCCEEEEEE
Confidence 34567999999999888999999999999 99999999998873 5799999988 479999999999999
Q ss_pred EEeccceEEEEEEEecCeecc-c--ce-eEEEeccccchhhhHHHHhh-------hhccccccceeeC
Q 032397 85 TKVMTRMASADIMCVGAKSVR-E--KF-SGIIRFFIFYIELLMHLLYG-------YLGSCKMQLNYSL 141 (141)
Q Consensus 85 ~~v~~~~a~v~I~~v~~~~l~-~--~~-~G~Ir~~dvr~~v~~~~~f~-------~vis~gd~~~y~l 141 (141)
+++++++|+|+|.+..+..+. + .| .|++|+++++++.+|+++|+ +|+|+++...|+|
T Consensus 104 t~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~L 171 (308)
T 2nn6_H 104 TEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 171 (308)
T ss_dssp EEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred EEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEE
Confidence 999999999999876555432 2 35 58889999988889999994 9999998777765
No 4
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.90 E-value=1.4e-23 Score=165.66 Aligned_cols=113 Identities=24% Similarity=0.299 Sum_probs=100.1
Q ss_pred CcEEecCCccCCCCCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEe
Q 032397 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (141)
Q Consensus 8 ~~iVlPGd~L~~~~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig~V~~v 87 (141)
+++|+|||.|+. ++|.+|+|||.++ |+||||++|.+... ++.++|.|.+ .+|.|++||+|+|+|+++
T Consensus 2 ~~iV~PGd~l~~-~~~~~G~Gty~~~--g~i~as~~G~v~~~---------~~~v~V~p~~-~~y~p~~GDiV~G~V~~v 68 (229)
T 2ba0_A 2 RKIVLPGDLLST-NPRAAGYGTYVEG--GKVYAKIIGLFDQT---------ETHVRVIPLK-GRYTPSVGDVVIGIIREV 68 (229)
T ss_dssp CCEECTTCEEES-CTTSBCTTEEEET--TEEEECSSEEEEEC---------SSCEEEEECS-SSCCCCTTCEEEEEEEEE
T ss_pred CCEEcCCCCccc-CCeEecCCEEEeC--CEEEEEEEEEEEEe---------CCEEEEEeCC-CcccCCCCCEEEEEEEEE
Confidence 469999999985 6799999999999 99999999999873 3579999988 479999999999999999
Q ss_pred ccceEEEEEEEecCeecccceeEEEeccccch---hhhHHHHhh-------hhccccccceeeC
Q 032397 88 MTRMASADIMCVGAKSVREKFSGIIRFFIFYI---ELLMHLLYG-------YLGSCKMQLNYSL 141 (141)
Q Consensus 88 ~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~---~v~~~~~f~-------~vis~gd~~~y~l 141 (141)
.++.|+|+| .+++.|+||.++++. ..+|.++|+ +|+++++..++.|
T Consensus 69 ~~~~a~V~I--------~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~L 124 (229)
T 2ba0_A 69 AANGWAVDI--------YSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTL 124 (229)
T ss_dssp CSSEEEEEC--------SSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEE
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEE
Confidence 999999999 788999999999994 567888884 8999988766654
No 5
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.89 E-value=7.5e-24 Score=169.25 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=102.7
Q ss_pred ccCCcEEecCCccCCCCCeeecC--cEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEE
Q 032397 5 EEEMVLVTPGEVLGKATEVKAGK--GAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIA 82 (141)
Q Consensus 5 ~~~~~iVlPGd~L~~~~e~~~G~--GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig 82 (141)
+++..+|+|||.|+. ++|.+|+ |||.++ |+||||++|.+... ++.++|.|.+..+|.|++||+|+|
T Consensus 13 ~~~~~iV~PGd~l~~-~~~~~G~~~Gty~~~--g~i~as~~G~v~~~---------~~~v~V~p~~~~~y~p~~GDiV~G 80 (251)
T 2je6_I 13 LQPRSIVVPGELLAE-GEFQIPWSPYILKIN--SKYYSTVVGLFDVK---------DTQFEVIPLEGSFYYPKINDIVIG 80 (251)
T ss_dssp CCSSCEECTTCEEEE-ECCCCCCCTTEEEET--TEEEECSSEEEEEE---------TTEEEEEESCCSCCCCCTTCEEEE
T ss_pred cCCCcEEcCCCCCcc-CCeeeCCCCCEEEEC--CEEEEEEEEEEEEe---------CCEEEEEECCCcccCCCCCCEEEE
Confidence 456789999999996 6799999 999999 99999999999883 368999999866899999999999
Q ss_pred EEEEeccceEEEEEEEecCeecccceeEEEeccccch----h-hhHHHHhh-------hhccccccceeeC
Q 032397 83 RVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI----E-LLMHLLYG-------YLGSCKMQLNYSL 141 (141)
Q Consensus 83 ~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~----~-v~~~~~f~-------~vis~gd~~~y~l 141 (141)
+|+++++..|+|+| .+++.|+||.++++. + .+|.++|+ +|+++++...+.|
T Consensus 81 ~V~~v~~~ga~VdI--------~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~L 143 (251)
T 2je6_I 81 LVEDVEIYGWVVDI--------KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVL 143 (251)
T ss_dssp EEEEECSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEE
T ss_pred EEEEEeCceEEEEc--------CCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEE
Confidence 99999999999998 889999999999986 2 66777874 8899887666654
No 6
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.87 E-value=3.5e-23 Score=168.37 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=91.0
Q ss_pred CCcEEecCCccCCCC-----------------------Ceee--cCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCe
Q 032397 7 EMVLVTPGEVLGKAT-----------------------EVKA--GKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPT 61 (141)
Q Consensus 7 ~~~iVlPGd~L~~~~-----------------------e~~~--G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~ 61 (141)
-+.+|+|||.|+..+ +|.+ |+|||..+ |.||||++|.++...+.. ....+.
T Consensus 38 ~~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~--~~I~as~aG~l~~~~~~~--~~~~~~ 113 (289)
T 2nn6_G 38 LGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCG--DRLLVTKCGRLRHKEPGS--GSGGGV 113 (289)
T ss_dssp GSSBCCSSEEECCSCSCCEECSSEEECC-----------------------C--CCEEECSCCEEEEECCTT--TSSCCE
T ss_pred CCcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEEC--CEEEEEEeEeEEeccCCc--cCccce
Confidence 356899999998765 7889 99999999 999999999998842000 001148
Q ss_pred EEEecCCCCCCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch-hhhHHHHhh-------hhccc
Q 032397 62 VEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI-ELLMHLLYG-------YLGSC 133 (141)
Q Consensus 62 i~V~~~~~~~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~-~v~~~~~f~-------~vis~ 133 (141)
+||.|.+ .+|+|++||+|+|+|+++++++|+|+| ..++.|+|+.++++. ..+|+++|+ +|+|+
T Consensus 114 v~V~~~~-~rYiP~vGDiVIG~Vt~v~~~~~~VdI--------~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~ 184 (289)
T 2nn6_G 114 YWVDSQQ-KRYVPVKGDHVIGIVTAKSGDIFKVDV--------GGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVA 184 (289)
T ss_dssp EEEECCC-SSCCCCSSEEEEEEEEEEETTEEEEEC--------SSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEEC
T ss_pred EEEEecC-CCCCCCCCCEEEEEEEEEeCcEEEEEE--------CCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEc
Confidence 8999988 479999999999999999999999999 678999999999984 456888884 89999
Q ss_pred cccceeeC
Q 032397 134 KMQLNYSL 141 (141)
Q Consensus 134 gd~~~y~l 141 (141)
++...+.|
T Consensus 185 ~~~~~~eL 192 (289)
T 2nn6_G 185 NKDMEPEM 192 (289)
T ss_dssp CTTSCCEE
T ss_pred CCCCceEE
Confidence 88766654
No 7
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.87 E-value=2.9e-23 Score=164.18 Aligned_cols=115 Identities=23% Similarity=0.152 Sum_probs=55.3
Q ss_pred CcEEecCCccCCCCCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEEEEEEEEe
Q 032397 8 MVLVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKV 87 (141)
Q Consensus 8 ~~iVlPGd~L~~~~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiVig~V~~v 87 (141)
+.+|+|||.|+. ++|.+|+|||.++ |.|||+++|.+.. ++++..++|.|.+. +|.|++||+|+|+|+++
T Consensus 9 ~~iV~PGd~l~~-~~~~~G~Gty~~~--~~I~Asv~G~v~~-------~~~~~~vsV~p~~~-~y~p~~GDiV~G~V~~v 77 (235)
T 2z0s_A 9 GRIVVPGEPLPE-EVEASPPYVIDYK--GVKRATVVGLLRE-------KGDGGGRAFVKLKE-IYVPQAGDVVIGLIQSV 77 (235)
T ss_dssp -------------------------------------------------------------C-CCCCCTTCCEEEEEEEE
T ss_pred CcEEeCCCCccc-CceEcCCCEEEEC--CEEEEEEeEEEEE-------eCCccEEEEEeCCC-ccCCCCCCEEEEEEEEE
Confidence 479999999986 6699999999999 9999999998876 23345899999884 79999999999999999
Q ss_pred ccceEEEEEEEecCeecccceeEEEeccccch------hhhHHHHhh-------hhccccccceeeC
Q 032397 88 MTRMASADIMCVGAKSVREKFSGIIRFFIFYI------ELLMHLLYG-------YLGSCKMQLNYSL 141 (141)
Q Consensus 88 ~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~------~v~~~~~f~-------~vis~gd~~~y~l 141 (141)
+++.|+|+| .+++.|+||.+++.. ..+|.++|+ +|+++++...++|
T Consensus 78 ~~~~~~V~I--------~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~L 136 (235)
T 2z0s_A 78 GIMNWFVDI--------NSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLL 136 (235)
T ss_dssp CSSEEEEEC--------SSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEE
T ss_pred eCCeEEEEe--------CCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEE
Confidence 999999999 889999999999964 367778884 8999988666654
No 8
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.58 E-value=2.6e-08 Score=75.49 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeeccc-ceeEEEeccccch-hhhHHHHh
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRFFIFYI-ELLMHLLY 127 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~-~~~G~Ir~~dvr~-~v~~~~~f 127 (141)
+|+|++||+|+|+|+.+.++.|+|+| .. ++.|+|+.+++.. .-+|...|
T Consensus 2 rY~P~~gDvViG~V~~v~~~~~~VdI--------~~~~~~a~L~~s~~~g~~k~~r~~l 52 (175)
T 2ja9_A 2 RYIPSVNDFVIGVIIGTFSDSYKVSL--------QNFSSSVSLSYMAFPNASKKNRPTL 52 (175)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEES--------STTSCCEEEETTSSTTCCSSSCCCC
T ss_pred CccCCCcCEEEEEEEEEECcEEEEEE--------CCCCccEEEEHHHCCchhhhhhccC
Confidence 69999999999999999999999999 77 8999999999874 33344444
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.69 E-value=0.0001 Score=48.12 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
|++|+++.|+|+++++..|.|+| .....|+|+.+++..
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gllh~sel~~ 40 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINL--------NEQVRGLLRPRDMIS 40 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEECGGGCSS
T ss_pred CCCCCEEEEEEEEEeCCEEEEEE--------CCCCEEEEEHHHCCc
Confidence 78999999999999999999999 667999999999865
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.23 E-value=0.00069 Score=48.28 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
+++|++|.|+|++|++..|.|+| .....|+||.+++..
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l--------~~~~~Glihisel~~ 42 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVAL--------DEETQGLVHISEVTH 42 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEE--------ETTEEEEEEGGGTSS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEE--------CCCcEEEEEHHHCCc
Confidence 78999999999999999999999 667999999999975
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=97.12 E-value=0.0011 Score=50.01 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecc--cceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~--~~~~G~Ir~~dvr~ 119 (141)
...|++|++|.|+|++|++-.|.|+| . ....|+||++++..
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L--------~e~~g~eGLvhiSels~ 52 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSL--------LEYNNIEGMILLSELSR 52 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEE--------TTTTTEEEEEEGGGC--
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEE--------ccCCCcEEEEEHHHCCC
Confidence 35689999999999999999999999 4 35899999999964
No 12
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.03 E-value=0.00048 Score=47.42 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-+++|++|.|+|+++.+..|.|+| .....|+|+.+++..
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l--------~~~~~Gll~~sel~~ 66 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVEL--------ADGVEGYLRASEASR 66 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEEC--------STTCBCCBCTTCCCS
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEE--------CCCCEEEEEHHHcCc
Confidence 4589999999999999999999999 667999999999864
No 13
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.0011 Score=46.65 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=39.4
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeeccc-ceeEEEeccccch-h-hhHHHHh
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRFFIFYI-E-LLMHLLY 127 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~-~~~G~Ir~~dvr~-~-v~~~~~f 127 (141)
.+.|++|++|.|+|++|++..|+|+| .. ...|+||.+++.. + -.+.+.|
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l--------~g~~~~Glvhisel~~~~~~~~~~~~ 68 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKI--------PGCRKQGLVHRTHMSSCRVDKPSEIV 68 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEEC--------TTCSSCEEEEHHHHCSSCCSCHHHHC
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEE--------CCCcEEEEEEHHHCCcccccChhhcC
Confidence 46789999999999999999999999 33 3789999999975 3 3344444
No 14
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.95 E-value=0.0015 Score=49.08 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecc--cceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~--~~~~G~Ir~~dvr~ 119 (141)
...|++||+|.|+|+++++-.|.|+| . ....|+||.+++..
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L--------~e~~gveGLvhiSels~ 52 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKL--------LEYDNIEGMILLSELSR 52 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEE--------TTTTTCEEEEECC----
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEE--------cCCCCcEEEEEHHHcCC
Confidence 45689999999999999999999999 4 45899999999864
No 15
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.88 E-value=0.0022 Score=44.52 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=38.7
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccc
Q 032397 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFY 118 (141)
Q Consensus 60 ~~i~V~~~~~~~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr 118 (141)
+.+.+.|......-|++|+++.|+|+++++..|.|+| .....|+|+.+++.
T Consensus 14 k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l--------~~~~~Glvhisel~ 64 (115)
T 2khi_A 14 LVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI--------EEGVEGLVHVSEMD 64 (115)
T ss_dssp -------CCCSSCSSCSSCEEEEEEEEEETTEEEEEC--------STTCEEEEETTSSS
T ss_pred hhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEE--------CCCCEEEEEHHHCC
Confidence 4556666654456789999999999999999999999 66799999999985
No 16
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.0025 Score=43.51 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=35.5
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeeccc---ceeEEEeccccc
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE---KFSGIIRFFIFY 118 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~---~~~G~Ir~~dvr 118 (141)
...|++|+++.|+|++|.+..|.|+| .. ...|+||.+++.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l--------~~~~~~~~Glvhisel~ 49 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQL--------EGLRKRWEGLVHISELR 49 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEE--------CSSSSCCEEEECGGGTS
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEE--------cCCCCCeEEEEEHHHCC
Confidence 34589999999999999999999999 54 789999999994
No 17
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=96.59 E-value=0.0043 Score=49.65 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecc--cceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~--~~~~G~Ir~~dvr~ 119 (141)
...|++||+|.|+|+++.+..|.|+| . ....|+||.+++..
T Consensus 6 ~~~p~~Gdiv~G~V~~I~~fGaFV~L--------~e~~gieGlIhiSels~ 48 (275)
T 3aev_A 6 REYPEEGEFVVATVKRIHNYGAFLEL--------DEYPGKEAFMHISEVAS 48 (275)
T ss_dssp -CCCCTTCEEEEEEEEEETTEEEEEE--------TTSTTCEEEEEGGGSCS
T ss_pred ccCCCCCCEEEEEEEEEECcEEEEEE--------CCCCCeEEEEEHHHcCc
Confidence 45689999999999999999999999 6 36899999999964
No 18
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.55 E-value=0.0071 Score=40.23 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeeccc--ceeEEEecc-ccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVRE--KFSGIIRFF-IFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~--~~~G~Ir~~-dvr~ 119 (141)
-.|++|+++.|+|+ +++-.|.|+| .+ ...|++|.+ ++..
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel--------~~~~~~eGLvhis~el~~ 48 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYL--------FDYPHFEAILAESVKMHM 48 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEE--------TTCTTSEEEEGGGSSCCH
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEE--------CCCCCeEEEEEeeHHhCc
Confidence 45899999999999 9999999999 54 489999999 9865
No 19
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=96.33 E-value=0.0031 Score=50.17 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecc--cceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~--~~~~G~Ir~~dvr~ 119 (141)
.+.|++|++|.|+|+++.+..|.|+| . ....|+||.+++..
T Consensus 6 ~~~~~vG~iv~G~V~~I~~~GaFV~l--------~e~~~~~GlihiSels~ 48 (266)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDYGSYVSL--------DEYGGLQAFLPWSEVSS 48 (266)
T ss_dssp SSSCCTTCEEEEEEEECCSSSBEEEE--------TTTTSEECBBCGGGSSC
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEE--------cCCCCeEEEEEhHHcCc
Confidence 56799999999999999999999999 6 56899999999964
No 20
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=96.18 E-value=0.0042 Score=50.53 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecc--cceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVR--EKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~--~~~~G~Ir~~dvr~ 119 (141)
..|++||+|.|+|++|++..|.|+| . ....|+||.+++..
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L--------~ey~gveGLvhiSels~ 50 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSL--------LEYNNIEGMIHLSELSR 50 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEES--------CTTTSCCEEECGGGTSC
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEE--------CCCCCeEEEEEhHHcCc
Confidence 4588999999999999999999999 5 46889999999964
No 21
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=94.78 E-value=0.064 Score=39.38 Aligned_cols=40 Identities=28% Similarity=0.058 Sum_probs=35.3
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
..-|.+|+++.|+|++++.-.|.|+| . +++|++|.+++.+
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l--------~-~~~glvhis~l~~ 115 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEI--------G-PMSCFISRHSIPS 115 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEE--------T-TEEEEEEGGGSCT
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEE--------C-CEEEEEEHHHCCC
Confidence 34589999999999999999999999 3 6889999998854
No 22
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=94.78 E-value=0.045 Score=40.64 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
+-|++|+++.|+|+++++..|.|+| . ++.|++|.+++..
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l--------~-~~eglvhis~l~~ 115 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRL--------G-PLDGLIHVSQIMD 115 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SSEEEEEGGGSCS
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEE--------c-CccEEEEhHHhCC
Confidence 4599999999999999999999999 2 3899999998864
No 23
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=94.24 E-value=0.068 Score=36.94 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCCCCCEEEEEEEEeccceEEEEEEEecCeecc-cceeEEEecccc
Q 032397 73 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVR-EKFSGIIRFFIF 117 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~-~~~~G~Ir~~dv 117 (141)
-+++|+++.|+|++|....|.|+| . ....|+++.++.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l--------~~~~~~~l~~~~~~ 55 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDI--------GVDGTRAFLPLLKA 55 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEC--------CCSSCEEEEEHHHH
T ss_pred cCCCCCEEEEEEEEEeCceEEEEE--------CCCCeEEEEEEecc
Confidence 379999999999999999999999 3 235566666654
No 24
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=93.45 E-value=0.08 Score=35.90 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
--|++|++|.+.|+++.+.-+.++| .....|++|++++..
T Consensus 57 ~~l~~Ge~V~g~V~~i~~fG~fv~l--------~~~~eGlvhis~i~~ 96 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDFGIFIGL--------DGGIDGLVHLSDISW 96 (101)
T ss_dssp CCCCTTCEEEEEEEECCSEEEEECT--------TSCEEEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEeCCcEEEEEc--------CCCceEEEEHHHCcc
Confidence 3689999999999999999999998 567899999999853
No 25
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=93.12 E-value=0.12 Score=34.41 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=46.3
Q ss_pred ccccCCcEEecCCccCCC--CCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecC
Q 032397 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (141)
Q Consensus 3 ~~~~~~~iVlPGd~L~~~--~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~ 67 (141)
+|...++.|.||..|... ..+-||.++-.-. |..|||.+-|.+++... ..+++.|+|.|.
T Consensus 23 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~Gk-D~TLfAl~~G~V~f~~~----~~~r~~VsV~p~ 84 (85)
T 3v2d_0 23 VKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGR-DFTLFALVDGVVEFQDR----GRLGRYVHVRPL 84 (85)
T ss_dssp ESSCTTCEECTTCEEEECSSCSEEECTTEEECT-TCCEEESSSEEEEEEEC----GGGCEEEEEEEC
T ss_pred eEecCCeEEcCCeEEEecCCccCcCCCCEeEcC-CCeEEEecCEEEEEEEc----CCCCEEEEEEEC
Confidence 677889999999999654 3499999987663 48999999999999530 134578888763
No 26
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=93.12 E-value=0.21 Score=36.59 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=42.6
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccchh--hh-HHH--Hh---hhhccccccce
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIE--LL-MHL--LY---GYLGSCKMQLN 138 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~~--v~-~~~--~f---~~vis~gd~~~ 138 (141)
.-|.+|+++.|+|++++.-.|.|+| .. ..|++|.+++..+ .+ -.. ++ +++++.||.-.
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~FV~l--------~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~ 144 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIR 144 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEE--------TT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEE
T ss_pred ccCCCCCEEEEEEEEEecCEEEEEe--------cC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEE
Confidence 3489999999999999999999999 54 8999999988541 11 111 22 26688887643
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=92.47 E-value=0.023 Score=51.08 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|++|+++.|+|++|.+-.|+|+| .....|+||++++..
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel--------~~g~eGLvHiSels~ 672 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNF--------FGAKDGLVHVSQISN 672 (726)
T ss_dssp ------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEE--------CCCcEEEEEHHHcCc
Confidence 4589999999999999999999999 456999999999975
No 28
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=92.43 E-value=0.21 Score=36.77 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|.+|+++.|+|++++.-.+.|++ . ++.|++|.+++..
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l--------~-~~~glvh~s~l~~ 115 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNL--------G-PMDGLVHISQITD 115 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SSEEEEEGGGSCS
T ss_pred eeccCCCEEEEEEeeeccceEEEEE--------C-CccceEEeeecCC
Confidence 4599999999999999999999997 3 5899999999975
No 29
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=92.27 E-value=0.16 Score=40.53 Aligned_cols=38 Identities=13% Similarity=-0.091 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEEEeccceEEE-EEEEecCeecccceeEEEeccccch
Q 032397 74 PEPGSVVIARVTKVMTRMASA-DIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v-~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
-++||+|.|+|+++++--|+| .| ...+.|+||.+++..
T Consensus 150 ~~~G~~V~g~V~~i~~~G~fV~~i--------~~g~~Glih~SEl~~ 188 (285)
T 3go5_A 150 NMQNQNWPAIVYRLKLSGTFVYLP--------ENNMLGFIHPSERYA 188 (285)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET--------TTTEEEEECGGGCSS
T ss_pred CCCCCEEEEEEEEEeCCcEEEEEe--------CCCeEEEEEHHHccc
Confidence 367999999999999999999 88 778999999999874
No 30
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=91.55 E-value=0.2 Score=32.79 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=45.4
Q ss_pred ccccCCcEEecCCccCCC--CCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEec
Q 032397 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTG 66 (141)
Q Consensus 3 ~~~~~~~iVlPGd~L~~~--~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~ 66 (141)
+|...++.|.||..|... ..+-||.++-.-. |..++|.+-|.++... ....+++.|+|.|
T Consensus 14 vK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~Gk-D~TLfAl~~G~V~f~~---~~~~~r~~VsV~p 75 (76)
T 3r8s_W 14 VKRFGGESVLAGSIIVRQRGTKFHAGANVGCGR-DHTLFAKADGKVKFEV---KGPKNRKFISIEA 75 (76)
T ss_dssp ESSCTTCEECTTCEEEECSSCSSEECTTEEECT-TSCEEESSSEEEEEEE---ETTTTEEEEEEEC
T ss_pred EEecCCeEEecCcEEEeccCccCcCCCCeeecC-CCeEEEccCEEEEEEE---eCCCCCEEEEEEe
Confidence 677889999999999654 3499999987663 4899999999999852 0112356788875
No 31
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=91.06 E-value=0.21 Score=33.65 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=46.2
Q ss_pred ccccCCcEEecCCccCCC--CCeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecC
Q 032397 3 VKEEEMVLVTPGEVLGKA--TEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (141)
Q Consensus 3 ~~~~~~~iVlPGd~L~~~--~e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~ 67 (141)
+|...+..|.||..|... ..+-||.++-.-. |..|+|.+-|.+++... ..+++.|+|.|.
T Consensus 23 vK~~gGq~V~aG~IivRQRGtk~hPG~NVg~Gk-D~TLfAl~~G~V~f~~~----~~~r~~V~V~p~ 84 (91)
T 2zjr_T 23 VKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGR-DHTLFALSDGKVVFINK----GKGARFISIEAA 84 (91)
T ss_dssp CSSCTTCEECSSCEEECCSSSSSEECTTEECCT-TSCEEESSCEEEEEEEE----TTTEEEEEECCC
T ss_pred EEecCCeEEcCCeEEEecCCCEEcCCCCEEEcC-CCcEEeccceEEEEEEc----CCCcEEEEEEeC
Confidence 677889999999999654 3499999987652 48999999999999520 134578888874
No 32
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=89.68 E-value=0.42 Score=36.64 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|++|+++.|+|++++.-.+.|+| .. ..|++|++.+.+
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVel--------g~-~dGlVhiS~l~d 117 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQV--------GP-MKVFVTKHLMPQ 117 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEEC--------TT-SEEEEEGGGSCS
T ss_pred eccCCCCEEEEEEEEEecceEEEEe--------cC-cEEEEEHHHCCc
Confidence 4489999999999999999999999 44 789999998854
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.53 E-value=0.77 Score=37.73 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccc
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFY 118 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr 118 (141)
.|..+.|++|.|+|.++....+.|+| . ...|+|++++..
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDl--------G-k~EgiLp~sE~i 167 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRI--------G-KLETRLPKKEWI 167 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEE--------T-TEEEEEEGGGSC
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEe--------C-CeEEEEeHHHcC
Confidence 45677999999999999999999999 3 478888888774
No 34
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.92 E-value=0.14 Score=37.74 Aligned_cols=58 Identities=17% Similarity=-0.084 Sum_probs=42.8
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccchh--hhHH------HHhhhhccccccc
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYIE--LLMH------LLYGYLGSCKMQL 137 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~~--v~~~------~~f~~vis~gd~~ 137 (141)
..-|.+|+++.|+|+++++-.+.|++ . ++.|++|.+++.+. .+.. +.-.+++.+||.-
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l--------~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V 144 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANI--------G-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNV 144 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCB--------T-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCE
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEe--------C-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEE
Confidence 34599999999999999999999998 3 68899999998541 1110 1123577777754
No 35
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=88.53 E-value=0.086 Score=47.35 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|++|+++.|+|+++.+-.|+|+| .....|+||++++..
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel--------~~g~eGLvHiSel~~ 662 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAI--------GGGKEGLVHISQIAD 662 (723)
T ss_dssp ------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCC
Confidence 4589999999999999999999999 456889999999864
No 36
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=87.21 E-value=0.69 Score=39.99 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEEEEeccc--eEEEEEEEecCeecccceeEEEeccccc
Q 032397 73 VPEPGSVVIARVTKVMTR--MASADIMCVGAKSVREKFSGIIRFFIFY 118 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~--~a~v~I~~v~~~~l~~~~~G~Ir~~dvr 118 (141)
-+.+|+|..|+|+++.+. .|+|+| ...-.|+||.+|+.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdi--------G~gk~gfLhisei~ 81 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDY--------GAERHGFLPLKEIA 81 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEES--------SSSSCEEEEGGGSC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEe--------CCCcEEEEEHHHcC
Confidence 368999999999999999 899999 77788999999985
No 37
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=87.13 E-value=0.64 Score=29.76 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=35.4
Q ss_pred ccccCCcEEecCCccCCCC--CeeecCcEEEeCCCCeEEEEEeeEEE
Q 032397 3 VKEEEMVLVTPGEVLGKAT--EVKAGKGAYVAKHNGLVYASLTGLLR 47 (141)
Q Consensus 3 ~~~~~~~iVlPGd~L~~~~--e~~~G~GtY~~~~~g~I~Asv~G~~~ 47 (141)
+|......|.||..|...- .+-||.++-.-. |..|+|.+.|.++
T Consensus 23 vK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~Gk-D~TLfAl~~G~V~ 68 (69)
T 2ftc_O 23 IKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGK-NKCLYALEEGIVR 68 (69)
T ss_pred EEecCCeEecCCeEEEecCCCeEcCCCCeeecC-CCcEEEccceEEe
Confidence 5778889999999997543 488898886652 4899999999885
No 38
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=86.78 E-value=0.39 Score=43.54 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.++|++|.|+|++|+.-.++|+| .....|+||++++..
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l--------~~~~eGLVhiS~Lsd 689 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDI--------GVHQDGLVHISALSE 689 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEEC--------SSSSEEEEETTTSCS
T ss_pred cCCCCEEEEEEEEEecCCeEEEe--------CCCcEEEEEHHHcCc
Confidence 68999999999999999999998 445789999999975
No 39
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=86.40 E-value=0.91 Score=34.82 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
..-|.+|.++.|+|+.++...+.|++ ..++.|+++.++..+
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL--------~g~~eglv~~s~l~~ 116 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSL--------LGIFDDIFIPQNMLF 116 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEC--------TTSCCCEEEETTTSC
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEc--------cCccceEEEcHHHCC
Confidence 35589999999999999999999999 667899999998864
No 40
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=86.28 E-value=0.11 Score=46.83 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=19.0
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEecccc
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIF 117 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dv 117 (141)
.-|++|+++.|+|+++.+-.|+|+| .....|+||++++
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l--------~~g~eGLvHiSel 700 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSL--------LPGKDGLLHISQI 700 (757)
T ss_dssp ----------CBEEECC-CSCEECC--------C---CCCCC----
T ss_pred hhcccccEEEEEEEEccccEEEEEE--------cCCcEEEEEhHHh
Confidence 4589999999999999999999999 5568999999999
No 41
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=85.40 E-value=0.97 Score=35.66 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEEEEE----eccceEEEEEEEecCeeccc---ceeEEEeccccc
Q 032397 72 PVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRFFIFY 118 (141)
Q Consensus 72 ~~P~~GdiVig~V~~----v~~~~a~v~I~~v~~~~l~~---~~~G~Ir~~dvr 118 (141)
|..++|++|.|.|.+ +....+.|+| .. ...|+|.+++.-
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdl--------G~~~~k~EgiLP~~Eqi 48 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQV 48 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CSSSSCEEEEECGGGSC
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEe--------CCCCcceEEEEcHHHcC
Confidence 567899999999999 8999999999 33 367777777654
No 42
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=85.29 E-value=0.92 Score=43.01 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.--+++|++|.|+|++|+.-.|.|+| .....|+||++++..
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd 937 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAG 937 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEEC--------TTSCEEEECTTSSSS
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEe--------CCCceEEEEHHHcCC
Confidence 34578999999999999999999999 566899999999875
No 43
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=85.28 E-value=1.1 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|.+|.++.|+|++++...+.|++ . ++.|+++.++...
T Consensus 77 f~p~~GEv~~G~Vs~vt~~GifV~l--------g-~~eglv~~~~l~~ 115 (203)
T 3ayh_B 77 FRPFRGEVMLGKIKSCSEEGIRVTI--------S-FFDDIFIPKDMLF 115 (203)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEC--------S-SCCCEEEEGGGBC
T ss_pred EccCCCCEEEEEEEEEeccEEEEEE--------e-CceEEEEcHHhCC
Confidence 4489999999999999999999998 3 6889999988864
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=83.46 E-value=1.2 Score=36.88 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEEEEE----eccceEEEEEEEecCeeccc---ceeEEEeccccc
Q 032397 71 GPVPEPGSVVIARVTK----VMTRMASADIMCVGAKSVRE---KFSGIIRFFIFY 118 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~----v~~~~a~v~I~~v~~~~l~~---~~~G~Ir~~dvr 118 (141)
.|..++|++|.|.|.+ +....+.|+| .. ...|+|++++.-
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdL--------G~~~~k~EgiLP~~Eqi 171 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRI--------GTETKASEGVIPAAEQV 171 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEE--------CCSSSCEEEEECGGGSC
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEe--------CCCccceEEEEcHHHcC
Confidence 4668999999999999 9999999999 33 367888877764
No 45
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=81.41 E-value=2.7 Score=29.92 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=37.2
Q ss_pred CCCCCEE---------EEEEEEeccceEEEEEEEecC---------------------eecccceeEEEeccccch
Q 032397 74 PEPGSVV---------IARVTKVMTRMASADIMCVGA---------------------KSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiV---------ig~V~~v~~~~a~v~I~~v~~---------------------~~l~~~~~G~Ir~~dvr~ 119 (141)
.++||+| +|.|+..+++.+.|.|++|-- +.|+..-+..+..+.+++
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVlKHP~QGDLHnP~q~dvpfFHERkALs~~Ek~~ip~~~vk~ 83 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLHNVKQANVPFFHERRALAFREQTNIPEQMVKK 83 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCCC---------------CCCCCCTTCEEEEEGGGEEE
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEecCCCccCCCCCCcCCCcceeehhhccHHHHhcCCHHhccc
Confidence 5889999 899999999999999999822 455666677778888875
No 46
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=77.19 E-value=4.1 Score=32.31 Aligned_cols=36 Identities=6% Similarity=-0.153 Sum_probs=30.7
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccc
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFY 118 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr 118 (141)
..+|++|.|+|++++...|.+++ . ...|+|+.+++-
T Consensus 4 ~~~G~~v~g~V~~~~~~G~fv~~--------~-g~egllp~se~~ 39 (285)
T 3go5_A 4 TNLASFIVGLIIDENDRFYFVQK--------D-GQTYALAKEEGQ 39 (285)
T ss_dssp TTTTEEEEEEEEEECSSEEEEEE--------T-TEEEEEEGGGCC
T ss_pred ccCCCEEEEEEEEEECCEEEEEc--------C-CeEEEEEHHHCc
Confidence 35799999999999999999998 3 467888888773
No 47
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=74.31 E-value=2.6 Score=31.18 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=29.2
Q ss_pred CCCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEe
Q 032397 71 GPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIR 113 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir 113 (141)
...-++||+|.|||..+.... ...+-|++....+++.-|.|.
T Consensus 49 r~~l~~GDlV~ArV~~~~~~~-~~~Ltc~~~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 49 RPTLQVGDLVYARVCTAEKEL-EAEIECFDSTTGRDAGFGILE 90 (175)
T ss_dssp CCCCCTTCEEEEEEEECCTTS-CCEEESSCTTTCSCTTCEEEC
T ss_pred hccCCCCCEEEEEEEEecCCC-ceEEEecccccccccCCcCcC
Confidence 455699999999999998764 456666665444554446554
No 48
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=72.52 E-value=0.75 Score=42.89 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
--+++|++|.|+|++|+.-.|.|+| .....|+||++++..
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L--------~~gveGLVHiSelsd 940 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTT--------NSEVECVVNAQRHAG 940 (1030)
T ss_dssp ------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEe--------CCCcEEEEEHHHcCC
Confidence 3468999999999999999999999 455799999998865
No 49
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=71.82 E-value=4.6 Score=30.62 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI 119 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~ 119 (141)
.-|.+|+++.|+|+.++.....+-+ -..|...|...++.+
T Consensus 125 FrPf~GevL~G~V~~~s~~~Ig~~~--------~G~Fn~~Ip~~~ip~ 164 (214)
T 2rf4_A 125 WQPQVGDVLEGYIFIQSASHIGLLI--------HDAFNASIKKNNIPV 164 (214)
T ss_dssp ECCCTTCEEEEEECCCCSSCEEEEE--------TTTEEEEECSTTSCS
T ss_pred EecCCCCEEEEEEEEECCCcEEEEE--------eCCEEEEEcHHHCCC
Confidence 4499999999999999999887765 456777777777654
No 50
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=65.52 E-value=14 Score=24.37 Aligned_cols=57 Identities=9% Similarity=-0.226 Sum_probs=39.2
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEEEEecCeecccceeEEEeccccch-h--hhHHHH-hhhhcccccc
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRFFIFYI-E--LLMHLL-YGYLGSCKMQ 136 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~G~Ir~~dvr~-~--v~~~~~-f~~vis~gd~ 136 (141)
..|..|+...|.|+++.++.+.+.+ .....+.|..++++= + ..--+. ..++|..||.
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~--------~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~Gdv 89 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFR--------KNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGAL 89 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEE--------TTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEE--------cCCCeEEEcHHHChhhhhcccccccchhccCCCCCE
Confidence 4578899999999999999988877 555667788877762 2 110122 4556666653
No 51
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=64.50 E-value=9.5 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred CCCEEEEEEEEeccceEEEEE
Q 032397 76 PGSVVIARVTKVMTRMASADI 96 (141)
Q Consensus 76 ~GdiVig~V~~v~~~~a~v~I 96 (141)
+||.|.++|++...++|..++
T Consensus 46 PGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 46 VGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp TTCEEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEEEecCCEEEEEE
Confidence 599999999999999998766
No 52
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=62.35 E-value=11 Score=23.29 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=18.9
Q ss_pred CCCEEEEEEEEeccceEEEEE
Q 032397 76 PGSVVIARVTKVMTRMASADI 96 (141)
Q Consensus 76 ~GdiVig~V~~v~~~~a~v~I 96 (141)
+||.|.++|++...++|..++
T Consensus 48 PGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 48 KGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp TTCEEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEEEeeCCeEEEEE
Confidence 599999999999999998765
No 53
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=61.60 E-value=0.42 Score=36.26 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=43.6
Q ss_pred ccccCCcEEecCCccCCCC--CeeecCcEEEeCCCCeEEEEEeeEEEeeCCCCCCCCCCCeEEEecC
Q 032397 3 VKEEEMVLVTPGEVLGKAT--EVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGH 67 (141)
Q Consensus 3 ~~~~~~~iVlPGd~L~~~~--e~~~G~GtY~~~~~g~I~Asv~G~~~~~~~~~~~~~~~~~i~V~~~ 67 (141)
+|...+..|.||..|...- .+-||.++-.- +|..|+|.+-|.++.... ..+++.|+|.|.
T Consensus 80 VK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~G-kDhTLFAl~~G~VkF~~~----~~~Rk~VsV~p~ 141 (198)
T 3bbo_X 80 VKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIG-KDHTIFSLIDGLVKFEKF----GPDRKKISVYPR 141 (198)
T ss_dssp CSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSC-CCCCSBCCSCCCCCSSSS----CCCCSCCCSSCC
T ss_pred EEecCCeEeccCcEEEeccCceEcCCCCeeec-CCCceEeccceEEEEEEc----CCCcEEEEEEeC
Confidence 6778889999999997543 48888877543 248999999999988520 123566777764
No 54
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=53.52 E-value=29 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=34.8
Q ss_pred cEEEeCCCCeEEEEE---eeEEEeeCCCCCCCCCCCeEEEecCCCCCCCCCCCCEE----------EEEEEEeccc
Q 032397 28 GAYVAKHNGLVYASL---TGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVV----------IARVTKVMTR 90 (141)
Q Consensus 28 GtY~~~~~g~I~Asv---~G~~~~~~~~~~~~~~~~~i~V~~~~~~~~~P~~GdiV----------ig~V~~v~~~ 90 (141)
|.|-.. |.|..-+ .+.+.. .+....+.|....-...+|++|+-| +|+...+..+
T Consensus 31 g~y~~K--gvV~~V~~~~~c~V~l-------~~~g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~~id~~ 97 (127)
T 2ckk_A 31 KYHKKK--AIVKEVIDKYTAVVKM-------IDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEK 97 (127)
T ss_dssp GGTTCE--EEEEEEETTTEEEEEE-------TTTCCEEEEEGGGEEECCCCTTCEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCce--EEEEEecCCCeEEEEE-------CCCCCEEEEchHHcEEecCCCCCEEEEEecccCCcEEEEEEEeCC
Confidence 455555 6666654 445554 2334677888766567999999988 4666666555
No 55
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=52.84 E-value=8.9 Score=26.92 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=33.9
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEeccc---eEEEEEEEecCeecc
Q 032397 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTR---MASADIMCVGAKSVR 105 (141)
Q Consensus 60 ~~i~V~~~~~~~~~P~~GdiVig~V~~v~~~---~a~v~I~~v~~~~l~ 105 (141)
.-|.|.+..-+.+-...||+|.|+|..-... +|.+.|..||+.+..
T Consensus 77 ~DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~pe 125 (130)
T 1a62_A 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 (130)
T ss_dssp TCEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBCCC
T ss_pred CCEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCCHH
Confidence 4677777543445578999999999865443 389999999987654
No 56
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=46.43 E-value=19 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=18.6
Q ss_pred CCCCCCEEEEEEEEeccceEEEEE
Q 032397 73 VPEPGSVVIARVTKVMTRMASADI 96 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~~a~v~I 96 (141)
..++||.|.++|.++....-++++
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEEEE
T ss_pred eeCCCCEEEEEEEEEECCCCEEEE
Confidence 479999999999999875434433
No 57
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.71 E-value=34 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEEEeccceEEEEE
Q 032397 73 VPEPGSVVIARVTKVMTRMASADI 96 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~~a~v~I 96 (141)
..++||.|.++|.++...+..+.+
T Consensus 60 ~~~~Gd~V~VkV~~vd~~~i~LSl 83 (103)
T 2eqs_A 60 VVSKGQRVKVKVLSFTGTKTSLSM 83 (103)
T ss_dssp HCCTTCEEEEEEEEEETTEEEEES
T ss_pred EeCCCCEEEEEEEEEECCeeEEEE
Confidence 468999999999999886555444
No 58
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.26 E-value=60 Score=20.42 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCCCCCCCCEEEEEEEEeccceEEEEEEEecCee-----cccceeEEEeccccch
Q 032397 70 HGPVPEPGSVVIARVTKVMTRMASADIMCVGAKS-----VREKFSGIIRFFIFYI 119 (141)
Q Consensus 70 ~~~~P~~GdiVig~V~~v~~~~a~v~I~~v~~~~-----l~~~~~G~Ir~~dvr~ 119 (141)
....+++||.|+|+=+ -.......|..+.+.. ......-.++..++|.
T Consensus 6 ~~~~~kvGd~clA~ws--Dg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrp 58 (74)
T 2equ_A 6 SGFDFKAGEEVLARWT--DCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKA 58 (74)
T ss_dssp SCCCCCTTCEEEEECS--SSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEEC
T ss_pred CCCCCCCCCEEEEECC--CCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCee
Confidence 3567999999999965 6677888888886521 1122555566666664
No 59
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=36.90 E-value=16 Score=30.79 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=35.2
Q ss_pred CeEEEecCCCCCCCCCCCCEEEEEEEEeccc---eEEEEEEEecCeecc
Q 032397 60 PTVEVTGHKAHGPVPEPGSVVIARVTKVMTR---MASADIMCVGAKSVR 105 (141)
Q Consensus 60 ~~i~V~~~~~~~~~P~~GdiVig~V~~v~~~---~a~v~I~~v~~~~l~ 105 (141)
.-|.|.+..-+++-.+.||.|.|.|..-... ++.+.|..|++.+..
T Consensus 84 ~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~ 132 (427)
T 3l0o_A 84 DDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVE 132 (427)
T ss_dssp SCEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC-
T ss_pred CCeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChH
Confidence 4578887654556689999999999876544 599999999997653
No 60
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=35.42 E-value=37 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.9
Q ss_pred CCCCCEEEEEEEEeccc--eEEEEE
Q 032397 74 PEPGSVVIARVTKVMTR--MASADI 96 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~--~a~v~I 96 (141)
-++||+|.++|.++... ++.+.+
T Consensus 136 l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 136 FRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp CCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred cCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 58999999999999764 466666
No 61
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=34.74 E-value=39 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=18.8
Q ss_pred CCCCCCEEEEEEEEeccc-eEEEEE
Q 032397 73 VPEPGSVVIARVTKVMTR-MASADI 96 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~-~a~v~I 96 (141)
..++||+|.|+|.++... .+.+.+
T Consensus 114 ~l~~GD~V~a~Vi~v~~~~~i~LS~ 138 (235)
T 2z0s_A 114 LLKVGDYIKAKVVAFDKTRSPLLTV 138 (235)
T ss_dssp SSCTTCEEEEEEEEECTTSCEEEEC
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEE
Confidence 569999999999999875 344443
No 62
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=33.87 E-value=77 Score=20.47 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEEEec--cceEEEEE----EEecCee
Q 032397 74 PEPGSVVIARVTKVM--TRMASADI----MCVGAKS 103 (141)
Q Consensus 74 P~~GdiVig~V~~v~--~~~a~v~I----~~v~~~~ 103 (141)
+..+++|+|+-.+|. .++|+|.. +.++++.
T Consensus 31 ~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkD 66 (79)
T 1nh2_C 31 GPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRND 66 (79)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEE
T ss_pred cccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEE
Confidence 677999999877774 34699986 3445544
No 63
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.27 E-value=25 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=16.6
Q ss_pred CCCCCCCEEEEEEEEeccce
Q 032397 72 PVPEPGSVVIARVTKVMTRM 91 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~ 91 (141)
..-++||+|.|+|.++....
T Consensus 169 ~~f~~GDlV~ArV~s~~~~~ 188 (289)
T 2nn6_G 169 PNVQVGDLIYGQFVVANKDM 188 (289)
T ss_dssp SSSCTTCEEEEEEEECCTTS
T ss_pred hhcCCCCEEEEEEEEcCCCC
Confidence 34589999999999997754
No 64
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.16 E-value=38 Score=24.55 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=17.6
Q ss_pred CCCCCCCEEEEEEEEeccceEEEEE
Q 032397 72 PVPEPGSVVIARVTKVMTRMASADI 96 (141)
Q Consensus 72 ~~P~~GdiVig~V~~v~~~~a~v~I 96 (141)
-.-++||+|.++|.+ ..+.+.+
T Consensus 110 ~~~~~GD~V~akVi~---~~i~LS~ 131 (179)
T 3m7n_A 110 EAVGYLDILKARVIG---DNLRLST 131 (179)
T ss_dssp GTCCTTCEEEEEEEE---TTTEEEC
T ss_pred hcCCCCCEEEEEEEC---CeEEEEE
Confidence 345999999999998 5666666
No 65
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=30.40 E-value=57 Score=24.66 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCCCCCEEEEEEEEeccce-EEEEE
Q 032397 73 VPEPGSVVIARVTKVMTRM-ASADI 96 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~~-a~v~I 96 (141)
.-++||+|.|+|.++.... +.+.+
T Consensus 102 ~l~~GD~V~arVi~v~~~~~i~LS~ 126 (229)
T 2ba0_A 102 VLDIGDAIIAKVLNIDPKMKVTLTM 126 (229)
T ss_dssp TCCTTCEEEEEEEEECTTCCEEEEC
T ss_pred ccCCCCEEEEEEEEECCCCcEEEEE
Confidence 4599999999999998753 44443
No 66
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=29.83 E-value=1e+02 Score=19.26 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=29.9
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCee------cccceeEEEeccccch
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKS------VREKFSGIIRFFIFYI 119 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~------l~~~~~G~Ir~~dvr~ 119 (141)
=++||.|+||=. =...++.++|.++..+. .++.-.=-|+.+||+.
T Consensus 13 f~vgd~VmaRW~-Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~~kDIKp 63 (68)
T 2dig_A 13 FADGEVVRGRWP-GSSLYYEVEILSHDSTSQLYTVKYKDGTELELKENDIKS 63 (68)
T ss_dssp SCSSCEEEEECT-TTCCEEEEEEEEEETTTTEEEEECTTSCEEEEETTTEEC
T ss_pred eecCCEEEEEcc-CCccceEEEEEEeccCCceEEEEecCCCEEEechhcccc
Confidence 389999999977 45556888888887431 2333344567777763
No 67
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=29.77 E-value=1e+02 Score=19.18 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEEEeccceEEEEEEEecCee------cccceeEEEeccccc
Q 032397 74 PEPGSVVIARVTKVMTRMASADIMCVGAKS------VREKFSGIIRFFIFY 118 (141)
Q Consensus 74 P~~GdiVig~V~~v~~~~a~v~I~~v~~~~------l~~~~~G~Ir~~dvr 118 (141)
=++||.|+||= .=..-++.+.|.++..+. .++.-.=-|+.+||+
T Consensus 10 ~~vgd~VmaRW-~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~kDIk 59 (66)
T 2l8d_A 10 YADGEVVMGRW-PGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKESDIR 59 (66)
T ss_dssp SCSSCEEEEEC-TTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred eecCCEEEEEc-CCCccceEEEEEEeccCCceEEEEecCCCEEeechhccc
Confidence 37899999987 444556788888877431 233334456777776
No 68
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=29.69 E-value=1.1e+02 Score=19.53 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=20.5
Q ss_pred CCCCCCEEEEEEEEec--cceEEEEE----EEecCee
Q 032397 73 VPEPGSVVIARVTKVM--TRMASADI----MCVGAKS 103 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~--~~~a~v~I----~~v~~~~ 103 (141)
.+..+++|+|+-.+|+ .++|+|.+ +.++++.
T Consensus 28 ~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkd 64 (76)
T 1nvp_C 28 LFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRD 64 (76)
T ss_dssp --CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEE
T ss_pred ccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEE
Confidence 3577999999877764 34699986 3445544
No 69
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=29.33 E-value=70 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCCEEEEEEEEeccceEEEEEEEec
Q 032397 76 PGSVVIARVTKVMTRMASADIMCVG 100 (141)
Q Consensus 76 ~GdiVig~V~~v~~~~a~v~I~~v~ 100 (141)
+||.|.++|++...++|..++..|-
T Consensus 46 pGe~v~~~i~~~~~~~~~~~~~~i~ 70 (433)
T 1uwv_A 46 PQENAEVTVTEDKKQYARAKVVRRL 70 (433)
T ss_dssp TTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CCCEEEEEEEeecCCceeEEecccc
Confidence 5999999999999999999888763
No 70
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=28.52 E-value=67 Score=28.01 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=32.4
Q ss_pred CCCCC--EEEEEEEEeccceEEEEEEEecCeeccc-ceeEEEeccccc
Q 032397 74 PEPGS--VVIARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRFFIFY 118 (141)
Q Consensus 74 P~~Gd--iVig~V~~v~~~~a~v~I~~v~~~~l~~-~~~G~Ir~~dvr 118 (141)
+++|+ +..|+|++|+...+.|.| .. ...|+||.+++.
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L--------~~~gieGlVhis~l~ 595 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRL--------VDNGAIAFIPAPFLH 595 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEE--------TTTCCEEEEEGGGTC
T ss_pred hccCCCceEEEEEEEEeCCceEEEE--------cCCcEEEEEEchhcc
Confidence 57898 999999999999999999 53 589999998885
No 71
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=27.73 E-value=54 Score=25.23 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.5
Q ss_pred CCCCCCEEEEEEEEeccce
Q 032397 73 VPEPGSVVIARVTKVMTRM 91 (141)
Q Consensus 73 ~P~~GdiVig~V~~v~~~~ 91 (141)
..++||+|.|+|.++....
T Consensus 121 ~l~vGD~V~arVi~v~~~~ 139 (251)
T 2je6_I 121 YLDVGDYVIARIENFDRSI 139 (251)
T ss_dssp SCCTTCEEEEEEEEEETTE
T ss_pred cCCCCCEEEEEEEEECCCC
Confidence 5699999999999998753
No 72
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=26.80 E-value=76 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCEEEEEEEEeccceEEEEEEEe
Q 032397 75 EPGSVVIARVTKVMTRMASADIMCV 99 (141)
Q Consensus 75 ~~GdiVig~V~~v~~~~a~v~I~~v 99 (141)
=+||.|.++|++...++|..++..|
T Consensus 45 lPGe~v~~~i~~~k~~~~~a~~~~v 69 (425)
T 2jjq_A 45 APGDEIIVERVERVKKRRVASQWKL 69 (425)
T ss_dssp CTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred CCCCEEEEEEEEecCCceEEEEccc
Confidence 3699999999999999998888765
No 73
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=21.91 E-value=1.5e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.4
Q ss_pred CCCCCCCCEEEEEEEEeccc--eEEEEE
Q 032397 71 GPVPEPGSVVIARVTKVMTR--MASADI 96 (141)
Q Consensus 71 ~~~P~~GdiVig~V~~v~~~--~a~v~I 96 (141)
.-..++||.|.++|.++... +..+.+
T Consensus 59 ~~~~~vGd~V~vkVl~vd~~~~~I~LSl 86 (175)
T 2a19_A 59 QKLIRVGKNDVAVVLRVDKEKGYIDLSK 86 (175)
T ss_dssp CCCCCTTSEEEEEEEEEETTTTEEEEES
T ss_pred HHcCCCCCEEEEEEEEEECCCCeEEEEE
Confidence 34579999999999999764 344444
No 74
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=20.78 E-value=1.2e+02 Score=23.07 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=34.9
Q ss_pred CCCCCCCEEE-----EEEEEeccceEEEEEEEecCeeccc-ceeEEEeccccch--hhhHHHHhhhhc
Q 032397 72 PVPEPGSVVI-----ARVTKVMTRMASADIMCVGAKSVRE-KFSGIIRFFIFYI--ELLMHLLYGYLG 131 (141)
Q Consensus 72 ~~P~~GdiVi-----g~V~~v~~~~a~v~I~~v~~~~l~~-~~~G~Ir~~dvr~--~v~~~~~f~~vi 131 (141)
..|++|..+. |+|+.|....+.+|- +.||.- ...=-+.+-+||+ .-++..-|+.++
T Consensus 101 ~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~----NHPLAGk~L~F~vev~~v~eat~eei~~~~~~~~ 164 (231)
T 3prb_A 101 IKPIKGLTITIDGIPGKIVSINSGRVLVDF----NHELAGKEVKYRIKIEEVVDDKKNIVKEIVKMYV 164 (231)
T ss_dssp CCCCTTCEEEETTEEEEEEEEETTEEEEEC----SCTTTTCCEEEEEEEEEECCSHHHHHHHHHHHHC
T ss_pred CCCCCCcEEEecCCCEEEEEEcCCEEEEeC----CCccCCCEEEEEEEEEEEecCCHHHHHHHHHHhc
Confidence 4588898886 789999999888887 334331 1111255667775 445555555443
Done!