Query 032398
Match_columns 141
No_of_seqs 130 out of 297
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 22:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s7r_A Heterogeneous nuclear r 98.1 3.2E-06 1.1E-10 54.6 4.7 39 101-139 8-46 (87)
2 2mss_A Protein (musashi1); RNA 98.1 2.3E-06 8E-11 53.9 3.9 33 107-139 2-34 (75)
3 4fxv_A ELAV-like protein 1; RN 98.1 3E-06 1E-10 57.8 4.1 33 106-138 21-53 (99)
4 4a8x_A RNA-binding protein wit 98.1 4.4E-06 1.5E-10 53.6 4.6 36 103-138 3-38 (88)
5 1wex_A Hypothetical protein (r 98.1 3E-06 1E-10 59.1 4.1 35 104-138 15-49 (104)
6 3d2w_A TAR DNA-binding protein 98.1 3.5E-06 1.2E-10 56.3 4.1 37 102-138 9-45 (89)
7 1iqt_A AUF1, heterogeneous nuc 98.1 3.4E-06 1.2E-10 53.0 3.8 32 107-138 2-33 (75)
8 1uaw_A Mouse-musashi-1; RNP-ty 98.0 3.3E-06 1.1E-10 53.1 3.5 34 106-139 2-35 (77)
9 1whx_A Hypothetical protein ri 98.0 3.8E-06 1.3E-10 58.0 4.2 35 104-138 10-44 (111)
10 3mdf_A Peptidyl-prolyl CIS-tra 98.0 6.2E-06 2.1E-10 52.7 4.8 37 102-138 5-41 (85)
11 2ywk_A Putative RNA-binding pr 98.0 5.3E-06 1.8E-10 54.2 4.6 38 102-139 14-51 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 98.0 5.6E-06 1.9E-10 53.1 4.5 37 103-139 5-41 (87)
13 1x4d_A Matrin 3; structural ge 98.0 2.2E-06 7.5E-11 60.3 2.7 36 103-138 14-50 (102)
14 1x5s_A Cold-inducible RNA-bind 98.0 6.6E-06 2.3E-10 54.6 4.9 38 102-139 10-47 (102)
15 2ytc_A PRE-mRNA-splicing facto 98.0 4.8E-06 1.6E-10 53.4 4.1 37 102-138 10-46 (85)
16 4f25_A Polyadenylate-binding p 98.0 5.5E-06 1.9E-10 57.2 4.6 35 104-138 5-39 (115)
17 2lxi_A RNA-binding protein 10; 98.0 3.4E-06 1.1E-10 56.4 3.1 34 105-138 2-36 (91)
18 2cq1_A PTB-like protein L; RRM 98.0 4.2E-06 1.5E-10 58.2 3.7 36 103-138 14-49 (101)
19 3ucg_A Polyadenylate-binding p 98.0 6.5E-06 2.2E-10 53.0 4.3 36 104-139 6-41 (89)
20 2cqi_A Nucleolysin TIAR; RNA r 98.0 7.2E-06 2.5E-10 54.6 4.7 38 102-139 13-50 (103)
21 3md1_A Nuclear and cytoplasmic 98.0 6E-06 2E-10 52.6 4.0 34 106-139 3-36 (83)
22 2dnp_A RNA-binding protein 14; 98.0 6.6E-06 2.3E-10 53.8 4.3 38 101-138 6-43 (90)
23 2dgt_A RNA-binding protein 30; 98.0 7.7E-06 2.6E-10 53.6 4.6 38 101-138 7-44 (92)
24 1wf0_A TDP-43, TAR DNA-binding 98.0 6.5E-06 2.2E-10 53.6 4.2 36 103-138 4-39 (88)
25 1sjq_A Polypyrimidine tract-bi 98.0 7E-06 2.4E-10 58.7 4.6 37 102-138 14-50 (105)
26 2e5h_A Zinc finger CCHC-type a 98.0 7.2E-06 2.5E-10 53.5 4.3 38 102-139 14-51 (94)
27 2cqc_A Arginine/serine-rich sp 98.0 6.2E-06 2.1E-10 53.7 4.0 36 103-138 14-49 (95)
28 2cq3_A RNA-binding protein 9; 98.0 9.3E-06 3.2E-10 54.1 4.9 39 101-139 12-50 (103)
29 1x4e_A RNA binding motif, sing 98.0 5.6E-06 1.9E-10 53.2 3.7 37 103-139 4-40 (85)
30 2ad9_A Polypyrimidine tract-bi 98.0 6.5E-06 2.2E-10 59.8 4.4 36 103-138 30-65 (119)
31 2cpf_A RNA binding motif prote 98.0 6.5E-06 2.2E-10 54.2 4.0 36 103-138 4-39 (98)
32 2cph_A RNA binding motif prote 98.0 7.8E-06 2.7E-10 54.5 4.4 39 101-139 12-50 (107)
33 3r27_A HnRNP L, heterogeneous 98.0 7.3E-06 2.5E-10 58.2 4.5 37 102-138 19-55 (100)
34 2x1f_A MRNA 3'-END-processing 98.0 7.8E-06 2.7E-10 54.0 4.3 35 105-139 3-37 (96)
35 1whw_A Hypothetical protein ri 98.0 8.8E-06 3E-10 53.7 4.5 38 102-139 6-43 (99)
36 2dnq_A RNA-binding protein 4B; 98.0 6.8E-06 2.3E-10 53.7 3.9 36 102-137 6-41 (90)
37 2dnh_A Bruno-like 5, RNA bindi 98.0 7.9E-06 2.7E-10 54.4 4.2 38 102-139 13-50 (105)
38 2do4_A Squamous cell carcinoma 97.9 9.4E-06 3.2E-10 53.8 4.5 37 102-138 15-51 (100)
39 1p27_B RNA-binding protein 8A; 97.9 9.8E-06 3.4E-10 54.1 4.6 36 103-138 22-57 (106)
40 2dnz_A Probable RNA-binding pr 97.9 1.2E-05 4.1E-10 52.5 4.8 37 103-139 4-40 (95)
41 2dgv_A HnRNP M, heterogeneous 97.9 9.9E-06 3.4E-10 52.6 4.4 37 102-138 6-42 (92)
42 1why_A Hypothetical protein ri 97.9 1.1E-05 3.6E-10 53.4 4.5 37 102-138 15-51 (97)
43 2dnm_A SRP46 splicing factor; 97.9 1.2E-05 3.9E-10 53.6 4.7 37 102-138 11-47 (103)
44 2cpj_A Non-POU domain-containi 97.9 1.1E-05 3.9E-10 53.5 4.6 37 102-138 13-49 (99)
45 2d9p_A Polyadenylate-binding p 97.9 7.5E-06 2.5E-10 54.6 3.6 37 102-138 13-49 (103)
46 1x5u_A Splicing factor 3B subu 97.9 1.3E-05 4.5E-10 53.4 4.8 38 102-139 13-50 (105)
47 2div_A TRNA selenocysteine ass 97.9 1.4E-05 4.8E-10 52.7 4.9 38 102-139 7-45 (99)
48 1x4b_A Heterogeneous nuclear r 97.9 1.1E-05 3.6E-10 55.0 4.3 36 104-139 27-62 (116)
49 2dgp_A Bruno-like 4, RNA bindi 97.9 1.2E-05 4E-10 53.7 4.4 37 102-138 11-47 (106)
50 2krb_A Eukaryotic translation 97.9 8.7E-06 3E-10 52.4 3.6 33 106-138 3-41 (81)
51 1s79_A Lupus LA protein; RRM, 97.9 9.5E-06 3.2E-10 56.1 4.0 36 103-138 10-45 (103)
52 2cqb_A Peptidyl-prolyl CIS-tra 97.9 1.2E-05 4.1E-10 53.3 4.4 37 102-138 10-46 (102)
53 2cqd_A RNA-binding region cont 97.9 1.1E-05 3.8E-10 54.9 4.2 38 102-139 15-52 (116)
54 2hvz_A Splicing factor, argini 97.9 1.1E-05 3.7E-10 53.6 4.1 33 106-138 2-34 (101)
55 2la4_A Nuclear and cytoplasmic 97.9 1.2E-05 4.3E-10 53.3 4.4 36 103-138 26-61 (101)
56 1x4a_A Splicing factor, argini 97.9 1.3E-05 4.3E-10 54.1 4.4 37 102-138 20-56 (109)
57 1oo0_B CG8781-PA, drosophila Y 97.9 1.3E-05 4.6E-10 53.9 4.5 37 102-138 24-60 (110)
58 2xs2_A Deleted in azoospermia- 97.9 1.3E-05 4.4E-10 53.3 4.4 36 103-138 8-43 (102)
59 1p1t_A Cleavage stimulation fa 97.9 1.2E-05 4.1E-10 53.3 4.1 35 104-138 8-42 (104)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.9 1.6E-05 5.6E-10 54.9 4.9 38 102-139 61-98 (140)
61 2dh8_A DAZ-associated protein 97.9 1.2E-05 4.1E-10 53.7 4.1 38 102-139 14-51 (105)
62 1x4f_A Matrin 3; structural ge 97.9 6.4E-06 2.2E-10 59.3 2.9 37 102-138 23-60 (112)
63 2dgu_A Heterogeneous nuclear r 97.9 1.4E-05 4.8E-10 53.5 4.4 37 102-138 9-45 (103)
64 2dgo_A Cytotoxic granule-assoc 97.9 1.5E-05 5E-10 54.1 4.5 38 102-139 13-50 (115)
65 2cq0_A Eukaryotic translation 97.9 7.9E-06 2.7E-10 54.4 3.1 38 102-139 13-50 (103)
66 2cqg_A TDP-43, TAR DNA-binding 97.9 1.7E-05 5.8E-10 52.8 4.7 37 102-138 13-49 (103)
67 1x4h_A RNA-binding protein 28; 97.9 1.7E-05 5.7E-10 53.2 4.6 37 102-138 13-49 (111)
68 2khc_A Testis-specific RNP-typ 97.9 1.2E-05 4.2E-10 54.7 4.0 38 102-139 38-75 (118)
69 1x5t_A Splicing factor 3B subu 97.9 1.1E-05 3.9E-10 52.7 3.6 36 103-138 4-40 (96)
70 2cpz_A CUG triplet repeat RNA- 97.9 1.6E-05 5.4E-10 54.1 4.4 37 103-139 24-60 (115)
71 2kn4_A Immunoglobulin G-bindin 97.8 1.4E-05 4.7E-10 56.8 4.2 38 102-139 68-105 (158)
72 2ki2_A SS-DNA binding protein 97.8 4.9E-06 1.7E-10 54.1 1.7 34 106-139 3-36 (90)
73 2err_A Ataxin-2-binding protei 97.8 1.9E-05 6.4E-10 54.0 4.7 38 101-138 26-63 (109)
74 2dgs_A DAZ-associated protein 97.8 1.8E-05 6.3E-10 52.3 4.5 37 102-138 8-44 (99)
75 3lqv_A PRE-mRNA branch site pr 97.8 1.5E-05 5.3E-10 54.0 4.2 36 103-138 7-42 (115)
76 3ulh_A THO complex subunit 4; 97.8 1.7E-05 5.8E-10 53.0 4.3 38 101-138 26-63 (107)
77 1x4g_A Nucleolysin TIAR; struc 97.8 2.2E-05 7.5E-10 53.1 4.8 38 101-138 22-59 (109)
78 1x5o_A RNA binding motif, sing 97.8 1.7E-05 5.7E-10 53.7 4.2 37 102-138 23-59 (114)
79 2rs2_A Musashi-1, RNA-binding 97.8 1.8E-05 6E-10 54.3 4.2 39 101-139 22-60 (109)
80 1x4c_A Splicing factor, argini 97.8 1.9E-05 6.6E-10 53.6 4.3 36 103-138 14-49 (108)
81 2i2y_A Fusion protein consists 97.8 1.6E-05 5.5E-10 56.5 4.1 37 102-138 71-107 (150)
82 2la6_A RNA-binding protein FUS 97.8 2.8E-05 9.5E-10 51.6 5.0 37 102-138 11-55 (99)
83 2e5g_A U6 snRNA-specific termi 97.8 3E-05 1E-09 51.1 5.1 36 103-138 7-42 (94)
84 2kvi_A Nuclear polyadenylated 97.8 2.2E-05 7.4E-10 52.2 4.4 37 101-137 7-44 (96)
85 1wf1_A RNA-binding protein RAL 97.8 2.4E-05 8.1E-10 53.0 4.6 34 104-137 27-61 (110)
86 2fy1_A RNA-binding motif prote 97.8 3E-05 1E-09 53.8 5.2 38 102-139 5-42 (116)
87 2xnq_A Nuclear polyadenylated 97.8 2E-05 7E-10 53.0 4.2 37 101-137 19-56 (97)
88 3ex7_B RNA-binding protein 8A; 97.8 2.1E-05 7.1E-10 54.1 4.3 36 104-139 22-57 (126)
89 2jrs_A RNA-binding protein 39; 97.8 2E-05 6.9E-10 54.1 4.1 38 101-138 23-60 (108)
90 2do0_A HnRNP M, heterogeneous 97.8 2E-05 6.8E-10 53.2 4.0 36 103-138 14-49 (114)
91 2jvo_A Nucleolar protein 3; nu 97.8 2.9E-05 1E-09 53.4 4.9 38 100-137 27-64 (108)
92 2cq4_A RNA binding motif prote 97.8 2.2E-05 7.4E-10 53.3 4.2 35 104-138 25-59 (114)
93 2jwn_A Embryonic polyadenylate 97.8 1.4E-05 4.8E-10 54.8 3.2 35 104-138 36-70 (124)
94 2dhg_A TRNA selenocysteine ass 97.8 2.1E-05 7.3E-10 52.2 4.0 36 103-138 8-44 (104)
95 3s8s_A Histone-lysine N-methyl 97.8 2.1E-05 7E-10 54.8 4.0 35 104-138 6-40 (110)
96 1rk8_A CG8781-PA, CG8781-PA pr 97.8 2.6E-05 8.8E-10 56.7 4.5 35 104-138 72-106 (165)
97 2dis_A Unnamed protein product 97.7 2.7E-05 9.1E-10 52.2 4.1 35 103-137 7-42 (109)
98 2e44_A Insulin-like growth fac 97.7 2E-05 6.9E-10 51.6 3.4 35 103-137 14-49 (96)
99 2dgx_A KIAA0430 protein; RRM d 97.7 2.6E-05 9E-10 51.9 3.9 35 104-138 9-47 (96)
100 4f02_A Polyadenylate-binding p 97.7 2.6E-05 8.7E-10 58.2 4.3 35 104-138 15-49 (213)
101 1nu4_A U1A RNA binding domain; 97.7 3.9E-05 1.3E-09 50.2 4.7 36 102-137 6-45 (97)
102 2cpd_A Apobec-1 stimulating pr 97.7 3.3E-05 1.1E-09 51.2 4.3 37 102-138 13-51 (99)
103 2kt5_A RNA and export factor-b 97.7 3.6E-05 1.2E-09 53.1 4.5 37 102-138 33-69 (124)
104 3ns6_A Eukaryotic translation 97.7 1.2E-05 4E-10 54.3 1.9 35 104-138 6-46 (100)
105 2ek1_A RNA-binding protein 12; 97.7 1.8E-05 6E-10 51.7 2.7 35 103-137 14-48 (95)
106 1h2v_Z 20 kDa nuclear CAP bind 97.7 4.5E-05 1.5E-09 54.5 5.1 38 101-138 36-73 (156)
107 3p5t_L Cleavage and polyadenyl 97.7 2.7E-05 9.2E-10 51.1 3.4 33 106-138 3-37 (90)
108 1l3k_A Heterogeneous nuclear r 97.7 3.8E-05 1.3E-09 54.7 4.5 38 102-139 11-48 (196)
109 2nlw_A Eukaryotic translation 97.7 3.6E-05 1.2E-09 52.1 4.0 36 103-138 14-55 (105)
110 3nmr_A Cugbp ELAV-like family 97.7 4.8E-05 1.6E-09 52.9 4.6 37 103-139 94-130 (175)
111 2cqh_A IGF-II mRNA-binding pro 97.7 2.8E-05 9.5E-10 50.9 3.2 34 103-136 7-41 (93)
112 1wi8_A EIF-4B, eukaryotic tran 97.7 3.8E-05 1.3E-09 51.3 3.9 37 102-139 13-49 (104)
113 2m2b_A RNA-binding protein 10; 97.6 3.7E-05 1.3E-09 53.9 3.7 36 103-138 22-59 (131)
114 2cpi_A CCR4-NOT transcription 97.6 2E-05 6.9E-10 53.9 2.0 38 102-139 13-53 (111)
115 2qfj_A FBP-interacting repress 97.6 5.7E-05 2E-09 54.6 4.5 35 104-138 28-62 (216)
116 1u6f_A Tcubp1, RNA-binding pro 97.6 4.6E-05 1.6E-09 53.2 3.9 37 102-138 40-76 (139)
117 2wbr_A GW182, gawky, LD47780P; 97.6 4.5E-05 1.5E-09 54.3 3.8 36 103-138 6-41 (89)
118 2cqp_A RNA-binding protein 12; 97.6 2.8E-05 9.6E-10 51.1 2.5 35 102-136 13-47 (98)
119 2cpe_A RNA-binding protein EWS 97.6 7.8E-05 2.7E-09 50.3 4.7 37 102-138 13-57 (113)
120 2cjk_A Nuclear polyadenylated 97.6 4.4E-05 1.5E-09 53.1 3.5 36 104-139 87-122 (167)
121 2kxn_B Transformer-2 protein h 97.6 3.4E-05 1.2E-09 54.9 3.0 37 102-138 44-80 (129)
122 2lkz_A RNA-binding protein 5; 97.6 4.8E-05 1.7E-09 52.2 3.5 34 105-138 10-45 (95)
123 2lea_A Serine/arginine-rich sp 97.6 5.4E-05 1.8E-09 54.1 3.7 35 104-138 47-81 (135)
124 2dng_A Eukaryotic translation 97.6 6.8E-05 2.3E-09 50.0 3.9 37 102-139 13-49 (103)
125 3beg_B Splicing factor, argini 97.5 4.8E-05 1.6E-09 52.6 3.1 35 104-138 16-50 (115)
126 2dnl_A Cytoplasmic polyadenyla 97.5 7.3E-05 2.5E-09 51.3 4.0 34 103-137 7-40 (114)
127 1l3k_A Heterogeneous nuclear r 97.5 7.9E-05 2.7E-09 53.1 4.3 37 103-139 103-139 (196)
128 2j76_E EIF-4B, EIF4B, eukaryot 97.5 3.9E-05 1.3E-09 51.4 2.4 37 102-139 17-53 (100)
129 2g4b_A Splicing factor U2AF 65 97.5 8.9E-05 3.1E-09 51.7 4.3 37 103-139 93-129 (172)
130 2e5i_A Heterogeneous nuclear r 97.5 7.3E-05 2.5E-09 54.4 3.9 33 106-138 27-59 (124)
131 2qfj_A FBP-interacting repress 97.5 0.00023 7.9E-09 51.4 6.2 40 100-139 121-160 (216)
132 2cpy_A RNA-binding protein 12; 97.5 0.00011 3.8E-09 50.3 4.3 37 102-138 13-50 (114)
133 2e5j_A Methenyltetrahydrofolat 97.5 9.5E-05 3.3E-09 48.9 3.7 31 102-132 17-47 (97)
134 1b7f_A Protein (SXL-lethal pro 97.5 0.00012 4.1E-09 50.7 4.3 38 102-139 87-124 (168)
135 1fxl_A Paraneoplastic encephal 97.4 0.00017 6E-09 49.5 4.9 37 103-139 87-123 (167)
136 3zzy_A Polypyrimidine tract-bi 97.4 9.8E-05 3.4E-09 54.7 3.9 37 102-138 26-62 (130)
137 2yh0_A Splicing factor U2AF 65 97.4 0.00018 6E-09 51.3 4.9 38 102-139 112-149 (198)
138 2hzc_A Splicing factor U2AF 65 97.4 0.00014 4.8E-09 46.5 4.0 35 104-138 6-51 (87)
139 3md3_A Nuclear and cytoplasmic 97.4 0.00015 5E-09 49.8 4.4 38 102-139 85-122 (166)
140 1wg5_A Heterogeneous nuclear r 97.4 0.00015 5.3E-09 48.9 4.3 37 102-138 13-50 (104)
141 2adc_A Polypyrimidine tract-bi 97.4 0.00012 4.2E-09 55.1 4.2 38 102-139 32-70 (229)
142 1sjr_A Polypyrimidine tract-bi 97.4 0.00011 3.8E-09 56.5 3.9 36 103-138 45-80 (164)
143 2cpx_A Hypothetical protein FL 97.4 4.2E-05 1.4E-09 51.6 1.3 31 103-133 24-54 (115)
144 3n9u_C Cleavage and polyadenyl 97.4 0.00013 4.4E-09 53.8 4.0 36 103-138 54-91 (156)
145 2ghp_A U4/U6 snRNA-associated 97.4 0.00011 3.7E-09 56.3 3.5 39 100-138 37-75 (292)
146 2f3j_A RNA and export factor b 97.4 0.00017 6E-09 53.9 4.5 36 103-138 87-122 (177)
147 1qm9_A Polypyrimidine tract-bi 97.4 0.00022 7.7E-09 51.4 4.8 36 104-139 120-156 (198)
148 2jvr_A Nucleolar protein 3; RN 97.4 0.00014 4.9E-09 51.4 3.7 38 100-137 24-62 (111)
149 1fjc_A Nucleolin RBD2, protein 97.3 0.00011 3.8E-09 48.1 2.8 33 102-134 14-46 (96)
150 2voo_A Lupus LA protein; RNA-b 97.3 0.00018 6E-09 54.5 4.1 36 103-138 108-143 (193)
151 3egn_A RNA-binding protein 40; 97.3 0.00015 5.1E-09 51.1 3.3 32 102-133 43-74 (143)
152 3smz_A Protein raver-1, ribonu 97.3 0.00034 1.2E-08 53.3 5.4 40 97-137 15-54 (284)
153 3pgw_A U1-A; protein-RNA compl 97.3 0.00021 7.2E-09 54.4 4.1 36 104-139 207-242 (282)
154 2cq2_A Hypothetical protein LO 97.3 0.00018 6.1E-09 52.1 3.5 37 102-138 23-61 (114)
155 1wez_A HnRNP H', FTP-3, hetero 97.3 0.00023 7.9E-09 48.5 3.8 36 102-138 13-48 (102)
156 2lmi_A GRSF-1, G-rich sequence 97.3 0.00022 7.6E-09 48.3 3.7 37 102-138 9-48 (107)
157 2a3j_A U1 small nuclear ribonu 97.3 0.00023 7.8E-09 51.3 3.9 35 104-138 29-67 (127)
158 2fc9_A NCL protein; structure 97.3 0.00015 5.1E-09 48.0 2.7 30 102-131 13-42 (101)
159 2dha_A FLJ20171 protein; RRM d 97.3 0.00033 1.1E-08 50.3 4.7 38 101-138 20-61 (123)
160 3q2s_C Cleavage and polyadenyl 97.3 0.0002 7E-09 55.6 3.8 36 103-138 67-104 (229)
161 3sde_A Paraspeckle component 1 97.2 0.00027 9.1E-09 54.4 4.4 37 102-138 20-56 (261)
162 2db1_A Heterogeneous nuclear r 97.2 0.00027 9.3E-09 49.1 3.9 36 103-138 16-54 (118)
163 1wg1_A KIAA1579 protein, homol 97.2 0.00031 1E-08 45.8 3.8 33 103-136 4-36 (88)
164 3pgw_S U1-70K; protein-RNA com 97.2 0.00044 1.5E-08 58.9 5.8 34 105-138 103-136 (437)
165 4f02_A Polyadenylate-binding p 97.2 0.00037 1.3E-08 51.9 4.7 36 103-138 102-137 (213)
166 2lcw_A RNA-binding protein FUS 96.3 5.5E-05 1.9E-09 51.6 0.0 31 103-133 6-36 (116)
167 2dgw_A Probable RNA-binding pr 97.2 0.00053 1.8E-08 44.5 4.8 37 102-139 8-44 (91)
168 1fj7_A Nucleolin RBD1, protein 97.2 0.00013 4.5E-09 48.2 1.9 31 103-133 16-46 (101)
169 2adc_A Polypyrimidine tract-bi 97.1 0.00047 1.6E-08 51.9 4.6 35 104-138 151-186 (229)
170 1wel_A RNA-binding protein 12; 97.1 0.00024 8.4E-09 49.1 2.5 32 102-133 23-54 (124)
171 3tyt_A Heterogeneous nuclear r 97.1 0.00032 1.1E-08 53.2 3.4 36 104-139 123-160 (205)
172 3sde_A Paraspeckle component 1 97.0 0.00064 2.2E-08 52.3 4.6 37 103-139 95-131 (261)
173 2hgl_A HNRPF protein, heteroge 97.0 0.00053 1.8E-08 50.0 3.7 36 103-138 43-81 (136)
174 3smz_A Protein raver-1, ribonu 97.0 0.00084 2.9E-08 51.2 4.7 36 103-138 94-129 (284)
175 2ghp_A U4/U6 snRNA-associated 97.0 0.00077 2.6E-08 51.6 4.5 37 102-138 115-152 (292)
176 2hgn_A Heterogeneous nuclear r 96.9 0.00094 3.2E-08 49.0 4.2 36 102-138 44-79 (139)
177 1owx_A Lupus LA protein, SS-B, 96.8 0.00081 2.8E-08 49.5 3.6 37 104-140 18-55 (121)
178 3u1l_A PRE-mRNA-splicing facto 96.8 0.00055 1.9E-08 55.1 2.6 37 102-138 132-177 (240)
179 1fje_B Nucleolin RBD12, protei 96.7 0.001 3.6E-08 46.7 3.2 32 103-134 98-129 (175)
180 2fc8_A NCL protein; structure 96.6 0.0014 4.7E-08 43.2 3.0 34 101-134 12-45 (102)
181 2dnn_A RNA-binding protein 12; 96.6 0.0023 7.8E-08 44.8 4.2 33 105-138 17-49 (109)
182 1x5p_A Negative elongation fac 96.6 0.0025 8.5E-08 42.0 4.2 33 103-137 14-46 (97)
183 1fje_B Nucleolin RBD12, protei 96.3 0.0016 5.4E-08 45.7 2.2 33 101-133 10-42 (175)
184 2hgm_A HNRPF protein, heteroge 96.3 0.0038 1.3E-07 45.2 4.3 36 102-138 40-77 (126)
185 2bz2_A Negative elongation fac 96.0 0.0049 1.7E-07 43.3 3.4 34 102-137 37-70 (121)
186 2diu_A KIAA0430 protein; struc 95.3 0.012 4.1E-07 42.4 3.2 29 106-134 11-44 (96)
187 3tht_A Alkylated DNA repair pr 95.2 0.013 4.3E-07 49.4 3.7 37 102-138 16-54 (345)
188 2d9o_A DNAJ (HSP40) homolog, s 95.1 0.016 5.4E-07 40.3 3.2 25 113-137 26-50 (100)
189 2dit_A HIV TAT specific factor 95.0 0.026 8.7E-07 38.4 4.1 35 102-136 13-58 (112)
190 2pe8_A Splicing factor 45; RRM 94.2 0.071 2.4E-06 36.8 4.9 37 102-138 6-47 (105)
191 3pq1_A Poly(A) RNA polymerase; 93.0 0.041 1.4E-06 48.4 2.4 34 104-138 53-86 (464)
192 2l9w_A U4/U6 snRNA-associated- 92.3 0.19 6.6E-06 37.7 4.8 48 92-139 9-61 (117)
193 3v4m_A Splicing factor U2AF 65 90.7 0.15 5.3E-06 35.0 2.7 35 104-138 5-49 (105)
194 3ue2_A Poly(U)-binding-splicin 90.5 0.2 6.7E-06 35.6 3.2 36 103-138 19-59 (118)
195 2dnr_A Synaptojanin-1; RRM dom 89.3 0.28 9.6E-06 34.8 3.1 36 104-139 7-50 (91)
196 1uw4_A UPF3X; nonsense mediate 88.0 0.37 1.3E-05 33.8 3.0 34 107-140 4-37 (91)
197 1ufw_A Synaptojanin 2; RNP dom 87.7 0.44 1.5E-05 34.2 3.3 36 104-139 15-59 (95)
198 1whv_A Poly(A)-specific ribonu 85.5 0.74 2.5E-05 33.6 3.6 31 101-132 13-43 (100)
199 1jmt_A Splicing factor U2AF 35 82.0 0.18 6.2E-06 34.5 -0.9 18 121-138 43-61 (104)
200 3s6e_A RNA-binding protein 39; 81.3 1 3.5E-05 31.7 2.8 36 104-139 7-52 (114)
201 3ctr_A Poly(A)-specific ribonu 80.9 1.2 4.2E-05 32.5 3.1 28 103-131 5-32 (101)
202 2l08_A Regulator of nonsense t 76.6 0.98 3.4E-05 32.4 1.5 32 107-138 12-43 (97)
203 3pgw_A U1-A; protein-RNA compl 54.0 6 0.00021 29.7 1.9 18 121-138 30-47 (282)
204 2a1j_A DNA repair endonuclease 52.6 4 0.00014 26.1 0.6 23 114-136 10-32 (63)
205 3d45_A Poly(A)-specific ribonu 49.7 16 0.00056 31.7 4.2 30 101-131 437-466 (507)
206 2vt3_A REX, redox-sensing tran 47.7 9.1 0.00031 29.8 2.1 35 102-136 27-65 (215)
207 3dxb_A Thioredoxin N-terminall 40.9 16 0.00054 26.8 2.4 20 118-137 143-162 (222)
208 3keo_A Redox-sensing transcrip 38.0 13 0.00046 29.1 1.7 31 103-133 27-61 (212)
209 1z00_B DNA repair endonuclease 37.5 9 0.00031 26.2 0.6 23 112-135 23-45 (84)
210 2dt5_A AT-rich DNA-binding pro 36.8 16 0.00055 28.2 2.0 32 104-135 24-59 (211)
211 1yrx_A Hypothetical protein RS 35.1 19 0.00065 26.1 2.0 23 105-127 6-28 (121)
212 2iyg_A APPA, antirepressor of 35.1 19 0.00065 26.3 2.0 26 102-127 15-40 (124)
213 3sft_A CHEB, chemotaxis respon 28.8 53 0.0018 25.4 3.7 37 103-140 34-83 (193)
214 2nxf_A Putative dimetal phosph 25.9 1.1E+02 0.0037 22.3 4.8 29 104-132 221-259 (322)
215 2dhx_A Poly (ADP-ribose) polym 25.2 92 0.0032 22.5 4.2 35 104-138 8-47 (104)
216 3ghf_A Septum site-determining 25.0 51 0.0017 23.4 2.8 30 101-130 46-75 (120)
217 4fxw_B Splicing factor 1; UHM, 24.3 37 0.0013 25.2 2.0 19 110-128 30-48 (124)
218 2a7o_A Huntingtin interacting 23.7 30 0.001 25.6 1.4 20 119-141 90-109 (112)
219 2yh9_A Small protein A, BAME p 22.9 45 0.0015 22.1 2.0 19 109-127 10-28 (88)
220 1wwh_A Nucleoporin 35, nucleop 20.2 71 0.0024 23.3 2.8 32 104-136 24-55 (119)
No 1
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.12 E-value=3.2e-06 Score=54.65 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=35.0
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...+-.|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec
Confidence 456778999999999999999999999999999998643
No 2
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.11 E-value=2.3e-06 Score=53.90 Aligned_cols=33 Identities=9% Similarity=0.341 Sum_probs=30.9
Q ss_pred EEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 107 CYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 107 IYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
|||+.||+.+++..|+.+|++||.|..+++.+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 34 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD 34 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 899999999999999999999999999998653
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.08 E-value=3e-06 Score=57.78 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.4
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
-|||+.||+.+++..|+++|++||.|..+++.+
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 53 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR 53 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee
Confidence 599999999999999999999999999999865
No 4
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.08 E-value=4.4e-06 Score=53.56 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=33.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
++-.|||+.||+.+++..|+++|++||.|.++++.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 38 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 38 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 467899999999999999999999999999999854
No 5
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=3e-06 Score=59.10 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=32.8
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-+|||++||+.+++..|+++|++||.|.+|++.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~ 49 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP 49 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 46899999999999999999999999999999865
No 6
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.06 E-value=3.5e-06 Score=56.27 Aligned_cols=37 Identities=22% Similarity=0.511 Sum_probs=33.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.|||++||+.+++..|+++|++||.|..+++..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~ 45 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 45 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 4577899999999999999999999999999999864
No 7
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.06 E-value=3.4e-06 Score=52.96 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=30.4
Q ss_pred EEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 107 CYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 107 IYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
|||+.||+.+++..|+++|++||.|..+++.+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 33 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPM 33 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 89999999999999999999999999998864
No 8
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=3.3e-06 Score=53.10 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=31.4
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
-|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 35 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 35 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC
Confidence 3899999999999999999999999999998653
No 9
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=3.8e-06 Score=57.99 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=32.5
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-+|||++||+.+++..|+.+|++||.|.+|++.+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 45899999999999999999999999999999864
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.04 E-value=6.2e-06 Score=52.72 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|.+|++.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEE
Confidence 4567899999999999999999999999999999854
No 11
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.04 E-value=5.3e-06 Score=54.23 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|.+|++.+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~ 51 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD 51 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 34568999999999999999999999999999998653
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.03 E-value=5.6e-06 Score=53.15 Aligned_cols=37 Identities=5% Similarity=0.234 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..-.|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 41 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD 41 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec
Confidence 3457999999999999999999999999999998653
No 13
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=2.2e-06 Score=60.32 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=33.5
Q ss_pred CcceEEecCCCC-CCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPA-HMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPp-gM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-+|||++||+ .+++..|+.+|++||.|..|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~ 50 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN 50 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc
Confidence 456899999999 999999999999999999999875
No 14
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=6.6e-06 Score=54.56 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=34.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD 47 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 45679999999999999999999999999999999653
No 15
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=4.8e-06 Score=53.43 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..+++.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 3456899999999999999999999999999998865
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.02 E-value=5.5e-06 Score=57.20 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=32.2
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.+-|||+.||+.+++..|+++|++||.|..+++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~ 39 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 39 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 45699999999999999999999999999998865
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.00 E-value=3.4e-06 Score=56.43 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred ceEEecCCCCCCCHHHHHHHhhccC-ccceEEecc
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQYG-EIQRIYLAP 138 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsqfG-eV~RIyL~p 138 (141)
-+|||+.||+.+++..|+++|++|| +|..|+|.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~ 36 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMR 36 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEe
Confidence 4899999999999999999999999 899998865
No 18
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=4.2e-06 Score=58.21 Aligned_cols=36 Identities=8% Similarity=0.308 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-+|||++||+.+++..|+.+|++||.|.+|++.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~ 49 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK 49 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 356899999999999999999999999999998865
No 19
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.00 E-value=6.5e-06 Score=53.02 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=32.8
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 41 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD 41 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec
Confidence 457999999999999999999999999999998653
No 20
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=7.2e-06 Score=54.62 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 50 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec
Confidence 45678999999999999999999999999999998753
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.99 E-value=6e-06 Score=52.57 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=31.4
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
-|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 36 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 36 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence 4899999999999999999999999999998643
No 22
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=6.6e-06 Score=53.77 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=34.1
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC
Confidence 34567899999999999999999999999999998864
No 23
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=7.7e-06 Score=53.63 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=34.2
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...+-.|||+.||+.+++..|+.+|++||.|..+++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence 34567899999999999999999999999999998864
No 24
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=6.5e-06 Score=53.59 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..+++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 39 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK 39 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec
Confidence 456799999999999999999999999999999864
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=7e-06 Score=58.71 Aligned_cols=37 Identities=5% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-+|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~ 50 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 50 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 4567899999999999999999999999999999865
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=7.2e-06 Score=53.46 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=34.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..+-.|||+.||+.+++..|+++|++||.|.+|++.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 51 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD 51 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 34568999999999999999999999999999998653
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=6.2e-06 Score=53.70 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+++|++||.|.+|++.+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 456899999999999999999999999999999865
No 28
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=9.3e-06 Score=54.09 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=34.9
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...+-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 50 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 50 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 345678999999999999999999999999999998653
No 29
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=5.6e-06 Score=53.25 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.+-.|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 4568999999999999999999999999999998653
No 30
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=6.5e-06 Score=59.79 Aligned_cols=36 Identities=6% Similarity=0.262 Sum_probs=33.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-+|||+.||+..++..|+.+|++||.|.+|++.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~ 65 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK 65 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 456899999999999999999999999999999865
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=6.5e-06 Score=54.24 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=32.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.+-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 39 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK 39 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 456799999999999999999999999999999864
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=7.8e-06 Score=54.47 Aligned_cols=39 Identities=18% Similarity=0.443 Sum_probs=35.0
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
....-.|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 345678999999999999999999999999999998654
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.96 E-value=7.3e-06 Score=58.25 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-||||+.||+..++..|+++|++||.|..|.+.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~ 55 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP 55 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc
Confidence 3456999999999999999999999999999999864
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.96 E-value=7.8e-06 Score=53.99 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=32.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
-.|||+.||+.+++..|+++|++||.|.+|++...
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 37 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD 37 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 47999999999999999999999999999998653
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=8.8e-06 Score=53.69 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+.+|++||.|..|++...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 43 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID 43 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec
Confidence 45678999999999999999999999999999998653
No 36
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=6.8e-06 Score=53.71 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 346689999999999999999999999999999875
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.95 E-value=7.9e-06 Score=54.44 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..+-.|||+.||+.+++..|+.+|++||.|.+|++.+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG 50 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 34678999999999999999999999999999998653
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=9.4e-06 Score=53.81 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+..|||+.||+.+++..|+.+|++||.|.+|++.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 51 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT 51 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 4567899999999999999999999999999999865
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=9.8e-06 Score=54.06 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~ 57 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL 57 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe
Confidence 356799999999999999999999999999999864
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=52.49 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.+-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 40 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 40 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec
Confidence 4568999999999999999999999999999998653
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.93 E-value=9.9e-06 Score=52.62 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 3456899999999999999999999999999999875
No 42
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.93 E-value=1.1e-05 Score=53.44 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~ 51 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK 51 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC
Confidence 3456899999999999999999999999999998865
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=53.63 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=34.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 47 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR 47 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 4567899999999999999999999999999999865
No 44
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=1.1e-05 Score=53.45 Aligned_cols=37 Identities=11% Similarity=0.497 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 49 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK 49 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec
Confidence 3456899999999999999999999999999999865
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=7.5e-06 Score=54.56 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM 49 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 3566899999999999999999999999999999864
No 46
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.3e-05 Score=53.36 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD 50 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 45678999999999999999999999999999998653
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=52.67 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=33.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccc-eEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQ-RIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~-RIyL~pE 139 (141)
..+-.|||+.||+.+++..|+++|++||.|. .+++.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~ 45 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN 45 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec
Confidence 4567899999999999999999999999999 8888653
No 48
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.1e-05 Score=55.03 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=33.0
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.-.|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 467999999999999999999999999999998653
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.90 E-value=1.2e-05 Score=53.69 Aligned_cols=37 Identities=16% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 47 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 47 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 3466899999999999999999999999999999865
No 50
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.90 E-value=8.7e-06 Score=52.40 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=30.4
Q ss_pred eEEecCCCCCC------CHHHHHHHhhccCccceEEecc
Q 032398 106 ICYLSRIPAHM------DPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 106 VIYLSrIPpgM------~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.|||+.||+.+ ++..|+++|++||.|..|++.+
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~ 41 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 41 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 69999999999 6799999999999999999864
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=9.5e-06 Score=56.06 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=33.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....||||.||+.+++..|+++|++||.|..|++.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~ 45 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 45 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE
Confidence 456799999999999999999999999999999865
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.2e-05 Score=53.29 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 46 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL 46 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEe
Confidence 3467899999999999999999999999999999865
No 53
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.1e-05 Score=54.93 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 52 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD 52 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc
Confidence 44678999999999999999999999999999998753
No 54
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=53.62 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=31.0
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
-|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 34 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR 34 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 489999999999999999999999999999865
No 55
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.2e-05 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=32.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..+++.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 356899999999999999999999999999998853
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.3e-05 Score=54.10 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 56 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 56 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3456899999999999999999999999999999854
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.89 E-value=1.3e-05 Score=53.89 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 60 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL 60 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 3456799999999999999999999999999999864
No 58
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.89 E-value=1.3e-05 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.473 Sum_probs=32.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.+..|||+.||+.+++..|+.+|++||.|.++++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 43 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT 43 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 356799999999999999999999999999998865
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.2e-05 Score=53.32 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+.+|++||.|..+++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 42 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 42 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 34799999999999999999999999999999864
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.88 E-value=1.6e-05 Score=54.85 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+.+|++||.|.+|++.+.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 98 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 98 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence 45778999999999999999999999999999998653
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=53.73 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 45678999999999999999999999999999998653
No 62
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=6.4e-06 Score=59.27 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=33.6
Q ss_pred CCcceEEecCCCCC-CCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAH-MDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpg-M~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-+|||++||+. +++..|+.+|++||.|.+|+|.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~ 60 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 60 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec
Confidence 34669999999997 99999999999999999999865
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.87 E-value=1.4e-05 Score=53.51 Aligned_cols=37 Identities=14% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 3456899999999999999999999999999998854
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.87 E-value=1.5e-05 Score=54.06 Aligned_cols=38 Identities=5% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 50 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 34668999999999999999999999999999998653
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=7.9e-06 Score=54.44 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+.+|++||.|.+|++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~ 50 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD 50 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec
Confidence 34678999999999999999999999999999998653
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=1.7e-05 Score=52.79 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe
Confidence 4567799999999999999999999999999999865
No 67
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=1.7e-05 Score=53.17 Aligned_cols=37 Identities=11% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 3466899999999999999999999999999999864
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.86 E-value=1.2e-05 Score=54.68 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|.+|++.+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 75 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID 75 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 34568999999999999999999999999999998653
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.1e-05 Score=52.69 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=32.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceE-Eecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRI-YLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RI-yL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..+ ++.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~ 40 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 40 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE
Confidence 35689999999999999999999999999998 7755
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.85 E-value=1.6e-05 Score=54.09 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=33.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID 60 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 3468999999999999999999999999999998653
No 71
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.85 E-value=1.4e-05 Score=56.79 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=34.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+++|++||.|.+|+|.+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~ 105 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 105 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 34689999999999999999999999999999998753
No 72
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.85 E-value=4.9e-06 Score=54.06 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=31.6
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 36 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD 36 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc
Confidence 4899999999999999999999999999998653
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.9e-05 Score=54.04 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=34.6
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 63 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF 63 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE
Confidence 34577899999999999999999999999999999865
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=52.28 Aligned_cols=37 Identities=14% Similarity=0.417 Sum_probs=33.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 44 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 44 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 4567899999999999999999999999999999865
No 75
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.84 E-value=1.5e-05 Score=53.96 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=32.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 42 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 356899999999999999999999999999999854
No 76
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.84 E-value=1.7e-05 Score=52.98 Aligned_cols=38 Identities=8% Similarity=0.312 Sum_probs=34.3
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 63 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 63 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 34567899999999999999999999999999998864
No 77
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=2.2e-05 Score=53.07 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=34.4
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 59 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 44566899999999999999999999999999999865
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.7e-05 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.|||+.||+.+++..|+++|++||.|..+++.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 4567899999999999999999999999999999865
No 79
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.81 E-value=1.8e-05 Score=54.31 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=32.8
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
......|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 60 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 60 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC
Confidence 345678999999999999999999999999999998653
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=1.9e-05 Score=53.56 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=32.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..--|||+.||+.+++..|+.+|++||.|..+++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~ 49 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 49 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec
Confidence 356799999999999999999999999999998854
No 81
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.81 E-value=1.6e-05 Score=56.49 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=34.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.....|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 107 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR 107 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee
Confidence 4567899999999999999999999999999999865
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.81 E-value=2.8e-05 Score=51.57 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccce--------EEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQR--------IYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R--------IyL~p 138 (141)
.....||||.||+.+++..|+++|++||.|.. +++..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~ 55 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT 55 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe
Confidence 45788999999999999999999999999998 77754
No 83
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=3e-05 Score=51.09 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=31.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..--|||+.||+.+++..|+.+|++||.|.+|.+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~ 42 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK 42 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC
Confidence 455799999999999999999999999999985443
No 84
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=2.2e-05 Score=52.15 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=32.6
Q ss_pred cCCcceEEecCCCC-CCCHHHHHHHhhccCccceEEec
Q 032398 101 ADRCGICYLSRIPA-HMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 101 ~~k~GVIYLSrIPp-gM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
....-.|||+.||+ .+++..|+.+|++||.|..|++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34567899999998 99999999999999999999874
No 85
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.80 E-value=2.4e-05 Score=52.98 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=31.5
Q ss_pred cceEEecCCCCC-CCHHHHHHHhhccCccceEEec
Q 032398 104 CGICYLSRIPAH-MDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 104 ~GVIYLSrIPpg-M~p~kLR~~fsqfGeV~RIyL~ 137 (141)
.-.|||+.||+. +++..|+.+|++||.|..|++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~ 61 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH 61 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe
Confidence 368999999999 9999999999999999999873
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.80 E-value=3e-05 Score=53.80 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=34.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..+..|||+.||+.+++..|+++|++||.|..|.+...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 42 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD 42 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 45678999999999999999999999999999998653
No 87
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.80 E-value=2e-05 Score=52.97 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=33.4
Q ss_pred cCCcceEEecCCCC-CCCHHHHHHHhhccCccceEEec
Q 032398 101 ADRCGICYLSRIPA-HMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 101 ~~k~GVIYLSrIPp-gM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
....-.|||+.||+ .+++..|+.+|++||.|..+++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34567899999998 99999999999999999999874
No 88
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.80 E-value=2.1e-05 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=32.9
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.-.|||+.||+.+++..|+.+|++||.|..|++...
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 57 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD 57 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 458999999999999999999999999999998643
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.79 E-value=2e-05 Score=54.08 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=34.3
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...+-.|||+.||+.+++..|+.+|++||.|.+|++.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 60 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 60 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 34567899999999999999999999999999999864
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=2e-05 Score=53.16 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=32.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 49 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE 49 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 345799999999999999999999999999998864
No 91
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.79 E-value=2.9e-05 Score=53.43 Aligned_cols=38 Identities=11% Similarity=0.301 Sum_probs=34.0
Q ss_pred hcCCcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 100 KADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 100 k~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
.....-.|||+.||+.+++..|+.+|++||.|..|++.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 34567899999999999999999999999999999874
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=2.2e-05 Score=53.31 Aligned_cols=35 Identities=14% Similarity=0.401 Sum_probs=32.5
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+++|++||.|..|+|..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe
Confidence 45799999999999999999999999999999864
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.78 E-value=1.4e-05 Score=54.84 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=32.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+++|++||.|..|++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 70 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC 70 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 56899999999999999999999999999998864
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.1e-05 Score=52.24 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhc-cCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQ-YGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsq-fGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+++|++ ||.|..|++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~ 44 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL 44 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE
Confidence 4567999999999999999999999 99999999864
No 95
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.77 E-value=2.1e-05 Score=54.78 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=32.2
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
+-.|||+.||+.+++..|+++|++||.|..|++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~ 40 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL 40 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 45799999999999999999999999999998854
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.76 E-value=2.6e-05 Score=56.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.4
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+.+|++||.|..|+|..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 106 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL 106 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe
Confidence 44799999999999999999999999999999865
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=2.7e-05 Score=52.15 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=32.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCc-cceEEec
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGE-IQRIYLA 137 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGe-V~RIyL~ 137 (141)
..--|||+.||+.+++..|+++|++||. |..+++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~ 42 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY 42 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE
Confidence 3457999999999999999999999999 9999986
No 98
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=51.65 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=31.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEE-ec
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIY-LA 137 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIy-L~ 137 (141)
.+-.|||+.||+.+++..|+.+|++||.|..++ +.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~ 49 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVN 49 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 467899999999999999999999999999994 54
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=2.6e-05 Score=51.89 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=32.2
Q ss_pred cceEEecCCCCCCCHHHHH----HHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLR----QILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR----~~fsqfGeV~RIyL~p 138 (141)
.--|||+.||+.+++..|+ .+|++||.|..|++.+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~ 47 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP 47 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe
Confidence 4469999999999999999 9999999999999874
No 100
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.74 E-value=2.6e-05 Score=58.23 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=32.4
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.||||.||+.+++..|+++|++||+|..|+|.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~ 49 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR 49 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEec
Confidence 34799999999999999999999999999999865
No 101
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.74 E-value=3.9e-05 Score=50.22 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCcceEEecCCCCCCCHHHHH----HHhhccCccceEEec
Q 032398 102 DRCGICYLSRIPAHMDPVKLR----QILSQYGEIQRIYLA 137 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR----~~fsqfGeV~RIyL~ 137 (141)
...-.|||+.||+.+++..|+ ++|++||.|.+|++.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 345689999999999999999 999999999999875
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=3.3e-05 Score=51.19 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhcc--CccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQY--GEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqf--GeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++| |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC
Confidence 345689999999999999999999999 9999988753
No 103
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.72 E-value=3.6e-05 Score=53.10 Aligned_cols=37 Identities=5% Similarity=0.269 Sum_probs=33.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 3456899999999999999999999999999999865
No 104
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.71 E-value=1.2e-05 Score=54.31 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=32.0
Q ss_pred cceEEecCCCC------CCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPA------HMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPp------gM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||. .+.+..|+++|++||.|..|++..
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~ 46 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI 46 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE
Confidence 34799999999 999999999999999999999854
No 105
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.71 E-value=1.8e-05 Score=51.71 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
.+-.|||+.||+.+++..|+++|++||.|.++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~ 48 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 48 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 35789999999999999999999999999866654
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.71 E-value=4.5e-05 Score=54.49 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=34.6
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...+-.|||+.||+.+++..|+.+|++||.|.+|++.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 73 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL 73 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 34678999999999999999999999999999999864
No 107
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.69 E-value=2.7e-05 Score=51.14 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=30.3
Q ss_pred eEEecCCCCCCCHHHHHHHhhccC--ccceEEecc
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYG--EIQRIYLAP 138 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfG--eV~RIyL~p 138 (141)
-||||.||+.+++..|+++|++|| .|..+++..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~ 37 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE 37 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe
Confidence 489999999999999999999999 999998864
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.69 E-value=3.8e-05 Score=54.70 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 48 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 48 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc
Confidence 34668999999999999999999999999999998653
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.68 E-value=3.6e-05 Score=52.10 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=32.2
Q ss_pred CcceEEecCCCCCC------CHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHM------DPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM------~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....|||+.||+.+ ++..|+.+|++||.|..|++.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~ 55 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 55 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC
Confidence 35689999999999 6799999999999999999864
No 110
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.67 E-value=4.8e-05 Score=52.91 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
....|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 4567999999999999999999999999999998653
No 111
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=2.8e-05 Score=50.88 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=30.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCc-cceEEe
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGE-IQRIYL 136 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGe-V~RIyL 136 (141)
..-.|||+.||+.+++..|+++|++||. |..+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 4567999999999999999999999999 776655
No 112
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=3.8e-05 Score=51.32 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..+-.|||+.||+.+++..|+.+|++|| |..|++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~ 49 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE 49 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC
Confidence 3457899999999999999999999999 999998653
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.64 E-value=3.7e-05 Score=53.94 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=32.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccce--EEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQR--IYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R--IyL~p 138 (141)
.+..|||+.||+.+++..|+.+|++||.|.. |+|..
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~ 59 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIK 59 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEE
Confidence 3567999999999999999999999999976 88764
No 114
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=2e-05 Score=53.86 Aligned_cols=38 Identities=5% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCcceEEecCCCCCCCHHHHH---HHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLR---QILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR---~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+ ++|++||.|..|++.+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~ 53 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS 53 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC
Confidence 456789999999999999999 99999999999998653
No 115
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.61 E-value=5.7e-05 Score=54.57 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 62 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW 62 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee
Confidence 45799999999999999999999999999999864
No 116
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.61 E-value=4.6e-05 Score=53.15 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=33.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3456899999999999999999999999999998864
No 117
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.61 E-value=4.5e-05 Score=54.25 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=33.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
-++-|||+.|++.+++..||.+|+|||+|..++|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 368899999999999999999999999999999864
No 118
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=2.8e-05 Score=51.13 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=30.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEe
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL 136 (141)
..+-.|||+.||+.+++..|+.+|++||.|..+.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~ 47 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC 47 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEE
Confidence 34678999999999999999999999999975544
No 119
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=7.8e-05 Score=50.31 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccc--------eEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQ--------RIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~--------RIyL~p 138 (141)
...-.|||+.||+.+++..|+++|++||.|. +|++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~ 57 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL 57 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE
Confidence 4567899999999999999999999999998 687764
No 120
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.59 E-value=4.4e-05 Score=53.09 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.+.|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 122 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD 122 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc
Confidence 678999999999999999999999999999998754
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.59 E-value=3.4e-05 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 80 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 80 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 3456899999999999999999999999999999864
No 122
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.58 E-value=4.8e-05 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=30.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhhccCc--cceEEecc
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQYGE--IQRIYLAP 138 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsqfGe--V~RIyL~p 138 (141)
-.|||+.||+..++..|+++|++||. |..|++.+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe
Confidence 35999999999999999999999995 67888765
No 123
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.56 E-value=5.4e-05 Score=54.07 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=32.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+.+|++||.|.+|++.+
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 55799999999999999999999999999999864
No 124
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.56 E-value=6.8e-05 Score=49.99 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..+-.|||+.||+.+++..|+++|++|| |..|++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~ 49 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD 49 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec
Confidence 3467899999999999999999999998 999988653
No 125
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.54 E-value=4.8e-05 Score=52.58 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=31.7
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+++|++||.|..+.+..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 50 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 50 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec
Confidence 46799999999999999999999999999998854
No 126
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=7.3e-05 Score=51.27 Aligned_cols=34 Identities=9% Similarity=0.342 Sum_probs=30.3
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
..--|||+.||+.+++..|+++|++||.|. +.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~ 40 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWP 40 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEe
Confidence 456799999999999999999999999998 6654
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.54 E-value=7.9e-05 Score=53.07 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
..-.|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 4578999999999999999999999999999988653
No 128
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.52 E-value=3.9e-05 Score=51.40 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=31.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++|| |..|++...
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~ 53 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE 53 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEec
Confidence 4567899999999999999999999999 999998653
No 129
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.52 E-value=8.9e-05 Score=51.74 Aligned_cols=37 Identities=11% Similarity=0.433 Sum_probs=33.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.+..|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 3678999999999999999999999999999998654
No 130
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.51 E-value=7.3e-05 Score=54.43 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=30.4
Q ss_pred eEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 106 ICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 106 VIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.|||++||...++..|+++|++||.|.+|++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 478999999999999999999999999998853
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.49 E-value=0.00023 Score=51.36 Aligned_cols=40 Identities=15% Similarity=0.386 Sum_probs=35.9
Q ss_pred hcCCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 100 KADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 100 k~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.......|||+.||+.+++..|+++|++||.|.+|++.+.
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 3456789999999999999999999999999999998653
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=0.00011 Score=50.34 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=33.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCcc-ceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEI-QRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV-~RIyL~p 138 (141)
...-.|||+.||..+++..|+++|++||.| ..|+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~ 50 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV 50 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE
Confidence 345689999999999999999999999999 8888854
No 133
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=9.5e-05 Score=48.92 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQ 132 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~ 132 (141)
..+-.|||+.||+.+++..|+++|++||.|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE
Confidence 3466899999999999999999999999995
No 134
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.46 E-value=0.00012 Score=50.71 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=34.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc
Confidence 34568999999999999999999999999999998654
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.45 E-value=0.00017 Score=49.51 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=33.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
....|||+.||+.+++..|+++|++||.|..+++.+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 4567999999999999999999999999999988653
No 136
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.44 E-value=9.8e-05 Score=54.67 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.+.=-|||++||...++..|+++|++||.|.+|++..
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc
Confidence 3444588999999999999999999999999998854
No 137
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.43 E-value=0.00018 Score=51.31 Aligned_cols=38 Identities=13% Similarity=0.470 Sum_probs=34.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.....|||+.||+.+++..|+++|++||.|..|++.+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec
Confidence 45689999999999999999999999999999998653
No 138
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.43 E-value=0.00014 Score=46.46 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=31.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhhcc----C-------ccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQY----G-------EIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqf----G-------eV~RIyL~p 138 (141)
+-.|||+.||+.+++..|+++|++| | .|..+++.+
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~ 51 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 51 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence 5579999999999999999999999 8 898888754
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00015 Score=49.84 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=34.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++||.|.++++.+.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 34568999999999999999999999999999998653
No 140
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=0.00015 Score=48.88 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccce-EEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQR-IYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R-IyL~p 138 (141)
.....|||+.||...++..|+.+|++||.|.. |+|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~ 50 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV 50 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEE
Confidence 35678999999999999999999999999987 77753
No 141
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.41 E-value=0.00012 Score=55.08 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCcceEEecCCCC-CCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPA-HMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPp-gM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+ .+++..|+.+|++||.|..|++.+.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~ 70 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN 70 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 3456899999999 9999999999999999999998753
No 142
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.41 E-value=0.00011 Score=56.53 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=32.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
+.-.|||++||..+++..|+++|++||.|.+|++..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 344589999999999999999999999999999853
No 143
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=4.2e-05 Score=51.63 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=28.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
..-.|||+.||+.+++..|+++|++||.|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~ 54 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKG 54 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 4568999999999999999999999999953
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=53.78 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccC--ccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYG--EIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfG--eV~RIyL~p 138 (141)
...-||||.||+.+++..|+.+|++|| .|..|++..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~ 91 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 91 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe
Confidence 456899999999999999999999999 999999864
No 145
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.37 E-value=0.00011 Score=56.30 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=32.7
Q ss_pred hcCCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 100 KADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 100 k~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.......|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 75 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD 75 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 345688999999999999999999999999999999865
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.37 E-value=0.00017 Score=53.94 Aligned_cols=36 Identities=6% Similarity=0.252 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..-.|||+.||+.+++..|+++|++||.|..|++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 122 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 122 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 346899999999999999999999999999999864
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.36 E-value=0.00022 Score=51.43 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=33.4
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccC-ccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYG-EIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfG-eV~RIyL~pE 139 (141)
.-+|||+.||+.+++..|+++|++|| .|..|++.+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 56899999999999999999999999 9999999663
No 148
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.36 E-value=0.00014 Score=51.39 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=33.3
Q ss_pred hcCCcceEEecCCCCCCCHHHHHHHhhccC-ccceEEec
Q 032398 100 KADRCGICYLSRIPAHMDPVKLRQILSQYG-EIQRIYLA 137 (141)
Q Consensus 100 k~~k~GVIYLSrIPpgM~p~kLR~~fsqfG-eV~RIyL~ 137 (141)
.....--|||+.||+.+++..|+.+|++|| +|..+.+.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 344566899999999999999999999999 99999884
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00011 Score=48.09 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=29.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceE
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRI 134 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RI 134 (141)
..+-.|||+.||+.+++..|+++|++||.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 346789999999999999999999999999776
No 150
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.33 E-value=0.00018 Score=54.48 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=33.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....|||+.||+..++..|+.+|++||.|..|++.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 356899999999999999999999999999999865
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.30 E-value=0.00015 Score=51.06 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
...-.|||+.||+.+++..|+.+|++||.|..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 34568999999999999999999999999976
No 152
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.29 E-value=0.00034 Score=53.30 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=34.0
Q ss_pred HHhhcCCcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 97 EAAKADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 97 ~~~k~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
.......+-.|||+.||+.+++..|+.+|++|| |..+++.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~ 54 (284)
T 3smz_A 15 TERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD 54 (284)
T ss_dssp HHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE
T ss_pred hhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe
Confidence 334445678999999999999999999999999 9888773
No 153
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.28 E-value=0.00021 Score=54.44 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=33.0
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
.-+|||+.||+.+++..|+++|++||.|.+|+|.+.
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 357999999999999999999999999999998753
No 154
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.00018 Score=52.10 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCcceEEe--cCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYL--SRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYL--SrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.||| |.||..+++..|+++|++||+|.+|++.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 34567999 88999999999999999999999998854
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.00023 Score=48.54 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=31.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||..+++..|+++|++||.| +|+|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEE
Confidence 456789999999999999999999999965 888854
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.26 E-value=0.00022 Score=48.34 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=33.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCc---cceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGE---IQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGe---V~RIyL~p 138 (141)
...-.|||+.||...++..|+++|++||. |..|+|..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~ 48 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLL 48 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEE
Confidence 45678999999999999999999999998 88998864
No 157
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.26 E-value=0.00023 Score=51.32 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.6
Q ss_pred cceEEecCCCCCCCHHHHH----HHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLR----QILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR----~~fsqfGeV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+ .+|++||.|..|++..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL 67 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence 4579999999999998766 7999999999998853
No 158
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00015 Score=48.01 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCcc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEI 131 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV 131 (141)
...-.|||+.||+.+++..|+++|++||.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI 42 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE
Confidence 346789999999999999999999999988
No 159
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.00033 Score=50.34 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=33.4
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCcc----ceEEecc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEI----QRIYLAP 138 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV----~RIyL~p 138 (141)
.....+|||+.||...++..|+++|++||.| ..|+|..
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~ 61 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVT 61 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEE
Confidence 3567899999999999999999999999986 6888754
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.25 E-value=0.0002 Score=55.57 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccC--ccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYG--EIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfG--eV~RIyL~p 138 (141)
.+--|||+.||..+++..|+.+|++|| .|.+|+|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~ 104 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE 104 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe
Confidence 455799999999999999999999999 999999864
No 161
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.24 E-value=0.00027 Score=54.37 Aligned_cols=37 Identities=11% Similarity=0.465 Sum_probs=33.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||+.+++..|+.+|++||.|..|++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR 56 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 3456899999999999999999999999999999864
No 162
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.22 E-value=0.00027 Score=49.07 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=32.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCc---cceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGE---IQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGe---V~RIyL~p 138 (141)
..-.|||+.||...++..|+++|++||. |..|+|..
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEE
Confidence 4567999999999999999999999999 88888864
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.21 E-value=0.00031 Score=45.83 Aligned_cols=33 Identities=12% Similarity=0.372 Sum_probs=30.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEe
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL 136 (141)
....|||+.||+.+++..|+++|++| .|..+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE
Confidence 45679999999999999999999999 9999987
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.21 E-value=0.00044 Score=58.87 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=32.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
-.|||+.||+.+++..|+.+|++||.|..|.|..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~ 136 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec
Confidence 5899999999999999999999999999998854
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.21 E-value=0.00037 Score=51.89 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-|||+.||+.+++..|+++|++||.|..+++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeec
Confidence 456799999999999999999999999999998864
No 166
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.27 E-value=5.5e-05 Score=51.60 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=28.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
..-.|||+.||+.+++..|+++|++||.|..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 36 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKT 36 (116)
Confidence 4567999999999999999999999999988
No 167
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00053 Score=44.49 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
...-.|||+.||+.+++..|+++|++| .|..|++...
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC
Confidence 456789999999999999999999999 8999988653
No 168
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.19 E-value=0.00013 Score=48.24 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=28.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
.+-.|||+.||+.+++..|+.+|++||.|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 4568999999999999999999999998865
No 169
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.13 E-value=0.00047 Score=51.89 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=32.8
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccC-ccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYG-EIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfG-eV~RIyL~p 138 (141)
.-.|||+.||+.+++..|+++|++|| .|..|++.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 57899999999999999999999999 999999965
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00024 Score=49.13 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
...-.|||+.||+.+++..|+.+|++||.|..
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccc
Confidence 34579999999999999999999999999975
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.09 E-value=0.00032 Score=53.21 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=32.3
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCcc--ceEEeccC
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEI--QRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV--~RIyL~pE 139 (141)
.-+|||+.||+.+++..|+++|++||.| .++.+.+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 3479999999999999999999999999 88887653
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.03 E-value=0.00064 Score=52.25 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=33.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEeccC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pE 139 (141)
....|||+.||+.+++..|+.+|++||.|.+|++.+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 4568999999999999999999999999999998653
No 173
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.00 E-value=0.00053 Score=50.03 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=32.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCc---cceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGE---IQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGe---V~RIyL~p 138 (141)
..-.|||+.||...++..|+.+|++||. |..|+|..
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE
Confidence 4567999999999999999999999999 88998864
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.97 E-value=0.00084 Score=51.15 Aligned_cols=36 Identities=11% Similarity=0.451 Sum_probs=33.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
....|||+.||+.+++..|+++|++||.|..+++..
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 456899999999999999999999999999998764
No 175
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.96 E-value=0.00077 Score=51.57 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=33.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccC-ccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYG-EIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfG-eV~RIyL~p 138 (141)
.....|||+.||+.+++..|+.+|++|| .|..|++.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 3578999999999999999999999999 999999864
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.87 E-value=0.00094 Score=48.95 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=31.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.|||+.||...++..|+++|++|| |..|+|..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 3456899999999999999999999999 66998864
No 177
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.00081 Score=49.53 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=33.4
Q ss_pred cceEEecCCCCC-CCHHHHHHHhhccCccceEEeccCC
Q 032398 104 CGICYLSRIPAH-MDPVKLRQILSQYGEIQRIYLAPED 140 (141)
Q Consensus 104 ~GVIYLSrIPpg-M~p~kLR~~fsqfGeV~RIyL~pEd 140 (141)
--||||+.||+. .+...|+.+|++||+|.-|.+++.+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~ 55 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA 55 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 347899999999 9999999999999999999887754
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.79 E-value=0.00055 Score=55.09 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCcceEEecCCCCCC---------CHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPAHM---------DPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM---------~p~kLR~~fsqfGeV~RIyL~p 138 (141)
...-.||||.||+.+ .+..|+.+|++||+|..|++.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC
Confidence 345689999999998 6999999999999999999864
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.70 E-value=0.001 Score=46.70 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=29.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceE
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRI 134 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RI 134 (141)
..-.|||+.||+.+++..|+++|++||.|..+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 45789999999999999999999999999776
No 180
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0014 Score=43.20 Aligned_cols=34 Identities=3% Similarity=0.094 Sum_probs=28.6
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccceE
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQRI 134 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RI 134 (141)
....-.|||+.||+.+++..|+++|++|+.|.-+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~ 45 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIV 45 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEE
Confidence 3456789999999999999999999999765444
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.0023 Score=44.82 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=30.8
Q ss_pred ceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
-.|||+.||...++..|+++|++| .|.+|+|..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~ 49 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLK 49 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEE
Confidence 589999999999999999999999 899999864
No 182
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.0025 Score=41.97 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
..-.|||+.+ .+++..|+.+|++||.|..|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 4568999995 89999999999999999999874
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.35 E-value=0.0016 Score=45.74 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=29.3
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccce
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~R 133 (141)
...+..|||+.||+.+++..|+.+|++||.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~ 42 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND 42 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 456789999999999999999999999998654
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.35 E-value=0.0038 Score=45.24 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccc--eEEecc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQ--RIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~--RIyL~p 138 (141)
.....|||+.||...++..|+.+|++|| |. .|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~ 77 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPV 77 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEE
Confidence 4578999999999999999999999995 65 888754
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.02 E-value=0.0049 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=29.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhccCccceEEec
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
...-.|||+.+ .+++..|+.+|++||.|..|++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 44568999995 59999999999999999999874
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.012 Score=42.42 Aligned_cols=29 Identities=28% Similarity=0.553 Sum_probs=24.9
Q ss_pred eEEecCCCCCCCHHH----HHHHhhccC-ccceE
Q 032398 106 ICYLSRIPAHMDPVK----LRQILSQYG-EIQRI 134 (141)
Q Consensus 106 VIYLSrIPpgM~p~k----LR~~fsqfG-eV~RI 134 (141)
.|||++||-..++.. |+++|++|| .|..|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 499999999999987 558999995 88655
No 187
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.25 E-value=0.013 Score=49.44 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCcceEEecC--CCCCCCHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSR--IPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSr--IPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-.||||+ |+.+.++..|+++|++||+|.+|++.+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 4456899999 578999999999999999999998854
No 188
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.07 E-value=0.016 Score=40.28 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhhccCccceEEec
Q 032398 113 PAHMDPVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 113 PpgM~p~kLR~~fsqfGeV~RIyL~ 137 (141)
++.+++..|+.+|++||.|..|++.
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc
Confidence 3679999999999999999999985
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.04 E-value=0.026 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCcceEEecCCCCCCC-----------HHHHHHHhhccCccceEEe
Q 032398 102 DRCGICYLSRIPAHMD-----------PVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~-----------p~kLR~~fsqfGeV~RIyL 136 (141)
..+-+|+|.+|..--. +..|+.+|++||.|.+|++
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE
Confidence 4578999999943322 4689999999999999987
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=94.24 E-value=0.071 Score=36.77 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCcceEEecCCCC--CC---CHHHHHHHhhccCccceEEecc
Q 032398 102 DRCGICYLSRIPA--HM---DPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 102 ~k~GVIYLSrIPp--gM---~p~kLR~~fsqfGeV~RIyL~p 138 (141)
..+-||||.++.. .+ ....|+++|++||.|.+|++.+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~ 47 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFE 47 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3567999999963 12 5789999999999999999864
No 191
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.02 E-value=0.041 Score=48.40 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.7
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.--|||+ +|+...+.+|.+||+|||.|..+|+-.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~ 86 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE 86 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc
Confidence 3457888 899999999999999999999998753
No 192
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.19 Score=37.75 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCcceEEecCCCCCCCHHHHHHHhhcc-----CccceEEeccC
Q 032398 92 QRLLEEAAKADRCGICYLSRIPAHMDPVKLRQILSQY-----GEIQRIYLAPE 139 (141)
Q Consensus 92 K~L~~~~~k~~k~GVIYLSrIPpgM~p~kLR~~fsqf-----GeV~RIyL~pE 139 (141)
|+|..........-+|-|=.||--++.++||.++..| |.|..|+|.|.
T Consensus 9 k~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 9 KRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp HHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred HHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 4454443333447788888999999999999999999 99999999985
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=90.73 E-value=0.15 Score=34.97 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=27.2
Q ss_pred cceEEecCC--CCCCCH--------HHHHHHhhccCccceEEecc
Q 032398 104 CGICYLSRI--PAHMDP--------VKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrI--PpgM~p--------~kLR~~fsqfGeV~RIyL~p 138 (141)
+-||.|.++ |..+.. ..|++.|++||.|.+|++.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~ 49 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPR 49 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCC
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEec
Confidence 557888876 444442 58999999999999999854
No 194
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=90.52 E-value=0.2 Score=35.56 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=28.6
Q ss_pred CcceEEecCCCC--CC---CHHHHHHHhhccCccceEEecc
Q 032398 103 RCGICYLSRIPA--HM---DPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 103 k~GVIYLSrIPp--gM---~p~kLR~~fsqfGeV~RIyL~p 138 (141)
.+-||+|.++-. -+ -...|++.|++||.|.+|++.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~ 59 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ 59 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee
Confidence 578999999832 22 2478999999999999999864
No 195
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.27 E-value=0.28 Score=34.84 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=28.0
Q ss_pred cceEEecCCC----CCCCH----HHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIP----AHMDP----VKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIP----pgM~p----~kLR~~fsqfGeV~RIyL~pE 139 (141)
-|.|.++..| ..+++ ..|.+.|++||+|.-+++...
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d 50 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED 50 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC
Confidence 4678888877 34455 779999999999999987653
No 196
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.05 E-value=0.37 Score=33.81 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=29.1
Q ss_pred EEecCCCCCCCHHHHHHHhhccCccceEEeccCC
Q 032398 107 CYLSRIPAHMDPVKLRQILSQYGEIQRIYLAPED 140 (141)
Q Consensus 107 IYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~pEd 140 (141)
|-|-||||+|++.++.+.++.+..+.-.|..+.+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~ 37 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND 37 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc
Confidence 5588999999999999999999988877776543
No 197
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.72 E-value=0.44 Score=34.20 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=28.3
Q ss_pred cceEEecCCCCC-----CCH----HHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAH-----MDP----VKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpg-----M~p----~kLR~~fsqfGeV~RIyL~pE 139 (141)
-|.|.++.+|+. +++ ..|.+.|++||+|.-+++..+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d 59 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG 59 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 478889988853 444 678999999999999987653
No 198
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=85.51 E-value=0.74 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.6
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCccc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEIQ 132 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV~ 132 (141)
...+-|+|| ..|+-++-..|.++|++||-|.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE
Confidence 456889999 9999999999999999999553
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=82.01 E-value=0.18 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=14.2
Q ss_pred HHHHh-hccCccceEEecc
Q 032398 121 LRQIL-SQYGEIQRIYLAP 138 (141)
Q Consensus 121 LR~~f-sqfGeV~RIyL~p 138 (141)
|+..| ++||.|.+|++.+
T Consensus 43 l~~~f~~~~G~V~~v~i~~ 61 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCD 61 (104)
T ss_dssp HHHHHHHHTCCEEEEEECC
T ss_pred HHHHhhccCCceEEEEEEe
Confidence 44444 9999999999865
No 200
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=81.31 E-value=1 Score=31.67 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.2
Q ss_pred cceEEecCCCCCCC----------HHHHHHHhhccCccceEEeccC
Q 032398 104 CGICYLSRIPAHMD----------PVKLRQILSQYGEIQRIYLAPE 139 (141)
Q Consensus 104 ~GVIYLSrIPpgM~----------p~kLR~~fsqfGeV~RIyL~pE 139 (141)
+=||.|.++=.... ...|++.|++||.|.+|++.+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~ 52 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN 52 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC
Confidence 44677766533222 2468999999999999998543
No 201
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=80.89 E-value=1.2 Score=32.46 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=25.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCcc
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEI 131 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV 131 (141)
.+.|+|| ..|+-+.-.-|.++|++||-|
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCE
Confidence 4679999 999999999999999999943
No 202
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=76.64 E-value=0.98 Score=32.40 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=24.6
Q ss_pred EEecCCCCCCCHHHHHHHhhccCccceEEecc
Q 032398 107 CYLSRIPAHMDPVKLRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 107 IYLSrIPpgM~p~kLR~~fsqfGeV~RIyL~p 138 (141)
|-|-||||+|++.++.+.++.+=++...|..+
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~ 43 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFA 43 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeC
Confidence 56899999999999988888765555554443
No 203
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=53.96 E-value=6 Score=29.66 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=16.1
Q ss_pred HHHHhhccCccceEEecc
Q 032398 121 LRQILSQYGEIQRIYLAP 138 (141)
Q Consensus 121 LR~~fsqfGeV~RIyL~p 138 (141)
|.++|++||.|..|++.+
T Consensus 30 L~~~F~~~G~i~~v~~~~ 47 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSR 47 (282)
T ss_pred HHHHHhccCCeEEEEEcC
Confidence 779999999999999764
No 204
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=52.59 E-value=4 Score=26.15 Aligned_cols=23 Identities=9% Similarity=0.210 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhhccCccceEEe
Q 032398 114 AHMDPVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 114 pgM~p~kLR~~fsqfGeV~RIyL 136 (141)
||..+...+.+|..||.|.+|.-
T Consensus 10 pGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 10 PGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp TTCCHHHHHHHHHHCSSHHHHHT
T ss_pred CCCCHHHHHHHHHHcCCHHHHHH
Confidence 47999999999999999987653
No 205
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=49.66 E-value=16 Score=31.71 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.0
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCcc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGEI 131 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGeV 131 (141)
...+.|+|++ .|+.+....|.++|+.||.|
T Consensus 437 ~~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v 466 (507)
T 3d45_A 437 PKRDHVLHVT-FPKEWKTSDLYQLFSAFGNI 466 (507)
T ss_dssp CCGGGEEEEE-CCTTCCHHHHHHHGGGGCCC
T ss_pred CCcCcEEEEe-CCCCCCHHHHHHHHHhcCCE
Confidence 3457799998 99999999999999999965
No 206
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=47.67 E-value=9.1 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCcceEEecC--C--CCCCCHHHHHHHhhccCccceEEe
Q 032398 102 DRCGICYLSR--I--PAHMDPVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 102 ~k~GVIYLSr--I--PpgM~p~kLR~~fsqfGeV~RIyL 136 (141)
...||-+||. | =-+++++++|.-||-||..|+..+
T Consensus 27 ~~~g~~~iss~~l~~~~~~~~~~iRkdls~fg~~G~~g~ 65 (215)
T 2vt3_A 27 HASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGY 65 (215)
T ss_dssp HHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCCC----
T ss_pred HHcCCcEECHHHHHHHhCCCHHHeechHHHHHHhcCCcc
Confidence 3467877773 1 136889999999999999987654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=40.95 E-value=16 Score=26.83 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHHHHHhhccCccceEEec
Q 032398 118 PVKLRQILSQYGEIQRIYLA 137 (141)
Q Consensus 118 p~kLR~~fsqfGeV~RIyL~ 137 (141)
...|++.|++||.|.+|++.
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~ 162 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIY 162 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHccCCeEEEEEe
Confidence 46899999999999999985
No 208
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=38.03 E-value=13 Score=29.09 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=22.8
Q ss_pred CcceEEecC--C--CCCCCHHHHHHHhhccCccce
Q 032398 103 RCGICYLSR--I--PAHMDPVKLRQILSQYGEIQR 133 (141)
Q Consensus 103 k~GVIYLSr--I--PpgM~p~kLR~~fsqfGeV~R 133 (141)
..||-+||. | =-+++++++|+-||-||..|+
T Consensus 27 ~~g~~~isS~ela~~~gv~~~qiRkDls~fg~~G~ 61 (212)
T 3keo_A 27 TDGIEKASSKQIADALGIDSATVRRDFSYFGELGR 61 (212)
T ss_dssp HTTCCEECHHHHHHHHTSCHHHHHHHHHTTGGGTT
T ss_pred HCCCeEECHHHHHHHHCCCHHHHHHHHHHHhhcCC
Confidence 356666663 1 136889999999999998774
No 209
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=37.49 E-value=9 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHhhccCccceEE
Q 032398 112 IPAHMDPVKLRQILSQYGEIQRIY 135 (141)
Q Consensus 112 IPpgM~p~kLR~~fsqfGeV~RIy 135 (141)
|| |..|...+.+|..||.|..|.
T Consensus 23 Ip-GIG~kr~~~LL~~FgSl~~i~ 45 (84)
T 1z00_B 23 MP-GVNAKNCRSLMHHVKNIAELA 45 (84)
T ss_dssp CS-SCCHHHHHHHHHHSSCHHHHH
T ss_pred CC-CCCHHHHHHHHHHcCCHHHHH
Confidence 44 689999999999999987764
No 210
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=36.81 E-value=16 Score=28.18 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred cceEEecC--C--CCCCCHHHHHHHhhccCccceEE
Q 032398 104 CGICYLSR--I--PAHMDPVKLRQILSQYGEIQRIY 135 (141)
Q Consensus 104 ~GVIYLSr--I--PpgM~p~kLR~~fsqfGeV~RIy 135 (141)
.||-+||. | =-+++++++|.-||-||..|+..
T Consensus 24 ~g~~~iss~~l~~~~~~~~~~iRkdls~~g~~G~~g 59 (211)
T 2dt5_A 24 QGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSYGTRG 59 (211)
T ss_dssp TTCCEECHHHHHHHHTSCHHHHHHHHHHTTCCCCTT
T ss_pred cCCcEECHHHHHHHhCCCHHHeechHHHHHHhcCCc
Confidence 46666552 1 12688999999999999987643
No 211
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=35.11 E-value=19 Score=26.11 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.9
Q ss_pred ceEEecCCCCCCCHHHHHHHhhc
Q 032398 105 GICYLSRIPAHMDPVKLRQILSQ 127 (141)
Q Consensus 105 GVIYLSrIPpgM~p~kLR~~fsq 127 (141)
-+||+|++-+.|.+..|..++.+
T Consensus 6 ~liY~S~a~~~~~~~~l~~Il~~ 28 (121)
T 1yrx_A 6 SCCYRSLAAPDLTLRDLLDIVET 28 (121)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEeecCCCCHHHHHHHHHH
Confidence 48999999999999999999875
No 212
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*
Probab=35.07 E-value=19 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHhhc
Q 032398 102 DRCGICYLSRIPAHMDPVKLRQILSQ 127 (141)
Q Consensus 102 ~k~GVIYLSrIPpgM~p~kLR~~fsq 127 (141)
.-.-+||+|++-+.|.+..|..++.+
T Consensus 15 ~L~~LiY~S~a~~~~~~~~l~~Il~~ 40 (124)
T 2iyg_A 15 DLVSCSYRSLAAPDLTLRDLLDIVET 40 (124)
T ss_dssp SCEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEEEEEeecCCCCHHHHHHHHHH
Confidence 34579999999999999999999975
No 213
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=28.76 E-value=53 Score=25.42 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=26.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHhhccCcc-------------ceEEeccCC
Q 032398 103 RCGICYLSRIPAHMDPVKLRQILSQYGEI-------------QRIYLAPED 140 (141)
Q Consensus 103 k~GVIYLSrIPpgM~p~kLR~~fsqfGeV-------------~RIyL~pEd 140 (141)
.-.||.+-|+|++|+. .|-+.|+++..+ ++||+.|.+
T Consensus 34 ~~~ivivQHm~~~f~~-~la~~L~~~~~l~V~ea~dg~~l~pG~vYiaP~~ 83 (193)
T 3sft_A 34 PAPIVVVQHMPPGFTK-SLAMRLDSTSELTVKEAEDGEEVKPGFVYIAPGD 83 (193)
T ss_dssp SSCEEEEECCCTTCHH-HHHHHHHHHCSSEEEECCTTCBCCTTEEEECCTT
T ss_pred CCeEEEEECCCCCcHH-HHHHHHhccCCCcEEEeCCCCEecCCEEEEcCCC
Confidence 3479999999998864 466777776543 567777654
No 214
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=25.93 E-value=1.1e+02 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=22.3
Q ss_pred cceEEecCCCCCC----------CHHHHHHHhhccCccc
Q 032398 104 CGICYLSRIPAHM----------DPVKLRQILSQYGEIQ 132 (141)
Q Consensus 104 ~GVIYLSrIPpgM----------~p~kLR~~fsqfGeV~ 132 (141)
.-||-++|.|+.- +...+..+|.+|+.|.
T Consensus 221 ~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~ll~~~~~v~ 259 (322)
T 2nxf_A 221 ERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVL 259 (322)
T ss_dssp CEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEE
T ss_pred CcEEEEEccCCCCCCCCccccccCHHHHHHHHhcCCCeE
Confidence 3478899999852 4678999999996553
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.19 E-value=92 Score=22.49 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=28.6
Q ss_pred cceEEecCCCCCCCHHHHHHHhhcc-----CccceEEecc
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQY-----GEIQRIYLAP 138 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqf-----GeV~RIyL~p 138 (141)
.-.|.+..||+......|.-||+.- |+|..|...+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~ 47 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG 47 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC
Confidence 4468999999999999999999982 6777776543
No 216
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=25.00 E-value=51 Score=23.41 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.9
Q ss_pred cCCcceEEecCCCCCCCHHHHHHHhhccCc
Q 032398 101 ADRCGICYLSRIPAHMDPVKLRQILSQYGE 130 (141)
Q Consensus 101 ~~k~GVIYLSrIPpgM~p~kLR~~fsqfGe 130 (141)
...|=||+|+.++....-..|.++|.+||-
T Consensus 46 ~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl 75 (120)
T 3ghf_A 46 KHAPVVINVSGLESPVNWPELHKIVTSTGL 75 (120)
T ss_dssp TTCEEEEEEEECCSSCCHHHHHHHHHTTTC
T ss_pred CCCcEEEEccccCChHHHHHHHHHHHHcCC
Confidence 356889999999877888999999999995
No 217
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=24.33 E-value=37 Score=25.24 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred cCCCCCCCHHHHHHHhhcc
Q 032398 110 SRIPAHMDPVKLRQILSQY 128 (141)
Q Consensus 110 SrIPpgM~p~kLR~~fsqf 128 (141)
..||++|++.++..|+-||
T Consensus 30 t~ip~~Lt~eq~~ay~~~~ 48 (124)
T 4fxw_B 30 TVIPPGLTREQERAYIVQL 48 (124)
T ss_dssp SBCCSSCCHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHh
Confidence 5799999999999998876
No 218
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=23.70 E-value=30 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.590 Sum_probs=14.8
Q ss_pred HHHHHHhhccCccceEEeccCCC
Q 032398 119 VKLRQILSQYGEIQRIYLAPEDP 141 (141)
Q Consensus 119 ~kLR~~fsqfGeV~RIyL~pEd~ 141 (141)
.-+++||.+||.| |..++|+
T Consensus 90 ~fi~kYM~K~G~v---Y~~~~d~ 109 (112)
T 2a7o_A 90 EYIKKYMQKFGAV---YKPKEDT 109 (112)
T ss_dssp HHHHHHHTTTCSB---CCGGGCC
T ss_pred HHHHHHHHHhCCc---cCCCCCc
Confidence 4589999999987 4466553
No 219
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=22.85 E-value=45 Score=22.09 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=17.1
Q ss_pred ecCCCCCCCHHHHHHHhhc
Q 032398 109 LSRIPAHMDPVKLRQILSQ 127 (141)
Q Consensus 109 LSrIPpgM~p~kLR~~fsq 127 (141)
|..|.+||+-.+++.+|..
T Consensus 10 ~~~i~~GmTk~qV~~lLG~ 28 (88)
T 2yh9_A 10 VSKIRVGMTQQQVAYALGT 28 (88)
T ss_dssp CTTCCTTCBHHHHHHHHCS
T ss_pred HHhccCCCCHHHHHHHcCC
Confidence 4789999999999999985
No 220
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=20.20 E-value=71 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.8
Q ss_pred cceEEecCCCCCCCHHHHHHHhhccCccceEEe
Q 032398 104 CGICYLSRIPAHMDPVKLRQILSQYGEIQRIYL 136 (141)
Q Consensus 104 ~GVIYLSrIPpgM~p~kLR~~fsqfGeV~RIyL 136 (141)
.-.|.|-=.|+.. -..+-++|++||+|.+...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 4556666677774 6778888999999998876
Done!