BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032399
(141 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118488224|gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 98/148 (66%), Gaps = 17/148 (11%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
+KAYSDKSRDYT+ D +L+A Q P + AP++WQ+ QA MY+G+ YAT AVP QVP
Sbjct: 326 NVKAYSDKSRDYTIPDASLIAAQA-PGLHTAPTMWQNPQAGSMYTGNNYATTAAVPVQVP 384
Query: 66 PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSP----------- 114
PGQVP+W+P+ QAG Y S G +PGQTYP P AYATA P GSSP
Sbjct: 385 PGQVPAWDPTMQAGGQGYASVPGTYPGQTYPTPPASAYATAAIPAGSSPRSHSSPISHSV 444
Query: 115 --LSLTQPGV-PPVRPGGASPPGHPPYY 139
++++ PG+ +RP GASPPG PPYY
Sbjct: 445 ASMAMSHPGMQSNLRPSGASPPGQPPYY 472
>gi|255584813|ref|XP_002533124.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223527087|gb|EEF29269.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 483
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 99/151 (65%), Gaps = 18/151 (11%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
+KAYSDKSRDYT+ D +LLA Q+P VP AP++WQ+ QA+PMY + YA+ AV QVP
Sbjct: 334 NVKAYSDKSRDYTIPDASLLAAGQVPGVPTAPTMWQNPQASPMYPVNSYASAAAVTAQVP 393
Query: 66 PGQVPSWNPSAQAGPAAYVSA-SGPFPGQTYPQSPVFAYATAPTPTGSSPLS-------- 116
GQVP+WNPS +AG AY S G FPGQ+YP P Y +A P GSSPL+
Sbjct: 394 AGQVPAWNPSMEAGGPAYPSVPPGTFPGQSYPAPPP-TYVSAAMPVGSSPLTQGSPMSPG 452
Query: 117 -----LTQPGV-PPVRPGGASPPGHPPYYVR 141
+T PGV +RPGGASPPG PP+Y R
Sbjct: 453 VGTMPMTHPGVQSNLRPGGASPPGQPPFYGR 483
>gi|224141415|ref|XP_002324068.1| predicted protein [Populus trichocarpa]
gi|222867070|gb|EEF04201.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 19/150 (12%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
+KA+SDKSRDYT+ D + L T Q P + AP+ WQ+ QA MY GS YAT A P QVP
Sbjct: 330 NVKAFSDKSRDYTIPDASFL-TAQAPGLHTAPTTWQNPQAGSMYLGSNYATTAAAPAQVP 388
Query: 66 PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSP----------- 114
PGQV +W+PS QAG Y S G +PGQTYP P AYA++ P GSSP
Sbjct: 389 PGQVAAWDPSMQAGGPGYSSVRGMYPGQTYPTPP--AYASSALPPGSSPHSYSSPISPGV 446
Query: 115 --LSLTQPGV-PPVRPGGASPPGHPPYYVR 141
+ +T PGV P +RPGGASPPG PYY R
Sbjct: 447 ASMGMTHPGVQPNMRPGGASPPGQTPYYGR 476
>gi|225452859|ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera]
gi|296082938|emb|CBI22239.3| unnamed protein product [Vitis vinifera]
Length = 449
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 12/133 (9%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SD+SRDYT+ D LLA QQ P P A +VWQ+ QAAP+Y+G + A A
Sbjct: 326 NVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQNPQAAPLYTGHDAAAA-----AAV 380
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPP-VR 126
QVPSW+P+ QAG + + SA+ FP Q + S + AY P P GSSPL+ P VPP VR
Sbjct: 381 QVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAY---PAPPGSSPLT---PAVPPNVR 434
Query: 127 PGGASPPGHPPYY 139
PGGASPPG PPY+
Sbjct: 435 PGGASPPGRPPYF 447
>gi|225452861|ref|XP_002283752.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 2
[Vitis vinifera]
Length = 420
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 12/133 (9%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SD+SRDYT+ D LLA QQ P P A +VWQ+ QAAP+Y+G + A A
Sbjct: 297 NVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQNPQAAPLYTGHDAAAA-----AAV 351
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPP-VR 126
QVPSW+P+ QAG + + SA+ FP Q + S + AY P P GSSPL+ P VPP VR
Sbjct: 352 QVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAY---PAPPGSSPLT---PAVPPNVR 405
Query: 127 PGGASPPGHPPYY 139
PGGASPPG PPY+
Sbjct: 406 PGGASPPGRPPYF 418
>gi|356531752|ref|XP_003534440.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 467
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +LLA Q P+ WQ+ QAA MY GS A A QVP G
Sbjct: 297 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 348
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
QVPSW+PS QA +Y SA G FP QT P+ +YA + P SSP + + P
Sbjct: 349 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 408
Query: 127 PGGASPPGHPP 137
P G + G PP
Sbjct: 409 PMGIAQLGVPP 419
>gi|356531748|ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +LLA Q P+ WQ+ QAA MY GS A A QVP G
Sbjct: 326 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 377
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
QVPSW+PS QA +Y SA G FP QT P+ +YA + P SSP + + P
Sbjct: 378 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 437
Query: 127 PGGASPPGHPP 137
P G + G PP
Sbjct: 438 PMGIAQLGVPP 448
>gi|356531750|ref|XP_003534439.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 505
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +LLA Q P+ WQ+ QAA MY GS A A QVP G
Sbjct: 335 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 386
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
QVPSW+PS QA +Y SA G FP QT P+ +YA + P SSP + + P
Sbjct: 387 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 446
Query: 127 PGGASPPGHPP 137
P G + G PP
Sbjct: 447 PMGIAQLGVPP 457
>gi|357501941|ref|XP_003621259.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496274|gb|AES77477.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 780
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 83/179 (46%), Gaps = 64/179 (35%)
Query: 9 LKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMY--SGSEYATAVPG---- 62
+KA+SDKSRDYTV P VPA VWQ+ QAAPMY + Y T VPG
Sbjct: 616 VKAFSDKSRDYTV-----------PLVPAP--VWQNPQAAPMYPTNSPAYQTQVPGGSPA 662
Query: 63 ---QVPPGQVPSWNPSAQAGPAAYVSASGPFPGQT--YPQSPVFAYATAPTPTGSSPLS- 116
QVP GQVPSW+ + A YV G +PGQT +P P +Y +A PT SSPL+
Sbjct: 663 YQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMP--SYGSAAMPTASSPLAQ 720
Query: 117 ------------------------------------LTQPGVPP-VRPGGASPPGHPPY 138
+ +PG PP VRPGGASP G Y
Sbjct: 721 SSHPGAPHNVNLQPSGGSTSGPGSSPHMQQNLGAQGMVRPGAPPNVRPGGASPSGQHYY 779
>gi|334702291|gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]
Length = 467
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 16/125 (12%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
++AYSDKSRDYTV + +LLA QQ +V A P VW + Q+ P+ S + YAT VPGQ P
Sbjct: 326 NVQAYSDKSRDYTVPESSLLAMQQASAVHATPPVWHNPQSGPVQSSAGYATTGTVPGQAP 385
Query: 66 PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQS----------PVFAYATAPTPTGSSPL 115
P+WNP+ Q G + + SA +PG +Y P + T TGS P
Sbjct: 386 ----PAWNPNLQGGGSTFPSAPTGYPGHSYAPPAPAYATAVHPPGSSQQTNHISTGSRPF 441
Query: 116 SLTQP 120
S++QP
Sbjct: 442 SVSQP 446
>gi|356568678|ref|XP_003552537.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 467
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 86/178 (48%), Gaps = 55/178 (30%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +LLA Q PA + WQ+ QAAPMY GS A A QVP G
Sbjct: 297 NVKAFSDKSRDYTVPDPSLLAAQG----PA--TAWQNPQAAPMYPGS--APAYHTQVPGG 348
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA--------------TAPTPTGSS 113
QVP+W+P+ QA +YVSA G F Q+ P+ AYA ++P ++
Sbjct: 349 QVPAWDPNLQAVRPSYVSAPGTFHVQSGAAPPMPAYAPAAAMPAASSPHAQSSPMAHNAN 408
Query: 114 PLSLTQPGVPP---------------------------------VRPGGASPPGHPPY 138
P+ + QP VPP RPGGASPPG Y
Sbjct: 409 PMGIAQPRVPPNANLQSSGASLSAPGSSPLMQTSQAAQGLVQPNARPGGASPPGQHYY 466
>gi|356568676|ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 86/178 (48%), Gaps = 55/178 (30%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +LLA Q PA + WQ+ QAAPMY GS A A QVP G
Sbjct: 326 NVKAFSDKSRDYTVPDPSLLAAQG----PA--TAWQNPQAAPMYPGS--APAYHTQVPGG 377
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA--------------TAPTPTGSS 113
QVP+W+P+ QA +YVSA G F Q+ P+ AYA ++P ++
Sbjct: 378 QVPAWDPNLQAVRPSYVSAPGTFHVQSGAAPPMPAYAPAAAMPAASSPHAQSSPMAHNAN 437
Query: 114 PLSLTQPGVPP---------------------------------VRPGGASPPGHPPY 138
P+ + QP VPP RPGGASPPG Y
Sbjct: 438 PMGIAQPRVPPNANLQSSGASLSAPGSSPLMQTSQAAQGLVQPNARPGGASPPGQHYY 495
>gi|81076794|gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanum tuberosum]
Length = 442
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 6/89 (6%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
++AYSDKSRDYTV + +LLA QQ +V A P VW + Q+ P+ S + YAT VPGQ P
Sbjct: 326 NVQAYSDKSRDYTVPESSLLAMQQASAVHATPPVWHNPQSGPVQSSAGYATTGTVPGQAP 385
Query: 66 PGQVPSWNPSAQAGPAAYVSASGPFPGQT 94
P+WNP+ Q G + + SA +PG +
Sbjct: 386 ----PAWNPNLQGGGSTFPSAPTGYPGHS 410
>gi|357496461|ref|XP_003618519.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355493534|gb|AES74737.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 483
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 72/132 (54%), Gaps = 25/132 (18%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+SDKSRDYTV D +L A Q AP+ WQ+ QAA MYSGS G
Sbjct: 361 NVKAFSDKSRDYTVLDPSLHAAQ-------APA-WQTTQAATMYSGS-----------MG 401
Query: 68 QVPSWNPSAQAGPAAYVSASGPFP-GQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVR 126
Q+PSW+P+ Q +Y+SA G FP GQ P P ++ A P P G+SP S +PP
Sbjct: 402 QMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFPGYSPAAVP-PAGASPHS----HMPPSS 456
Query: 127 PGGASPPGHPPY 138
GA P P Y
Sbjct: 457 FAGAFPGSQPHY 468
>gi|388491010|gb|AFK33571.1| unknown [Lotus japonicus]
Length = 457
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KAYSDKSRDYTV D +L A Q VPA + W + QAAPMY GS A A+ GQV G
Sbjct: 326 NVKAYSDKSRDYTVLDPSLRAAQ----VPA--TAWPNPQAAPMYPGS--APALQGQVSGG 377
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPG 92
Q+ SW+P+ Q +Y+ A G FPG
Sbjct: 378 QMSSWDPAHQEVSQSYIPAPGTFPG 402
>gi|77745463|gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tuberosum]
Length = 437
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
++AYSDKSRDYTV + +LLA QQ +V A P VW + Q+ P+ S + YAT VPGQ P
Sbjct: 326 NVQAYSDKSRDYTVPESSLLAMQQASAVHATPPVWHNPQSGPVQSSAGYATTGTVPGQAP 385
Query: 66 PGQVPSWNPSAQ 77
P+WNP+ Q
Sbjct: 386 ----PTWNPNLQ 393
>gi|356541547|ref|XP_003539236.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Glycine max]
Length = 447
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+K SDKSRDYT+ + + Q + P S + S S A A+ QV G
Sbjct: 319 NVKGSSDKSRDYTMPNHGVFEEQVETTDLENPH---STSMSHNSSNSSSAHALQAQVHGG 375
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRP 127
Q+PSWNP Y+ A G FP QTY P YA S + +T PGVP P
Sbjct: 376 QIPSWNPIHN-----YMFAPGTFPNQTYAVPPYLVYAVH----NESYMEITPPGVPGFSP 426
Query: 128 G------GASPPGHPPYY 139
G P G PYY
Sbjct: 427 HMQAGFVGFLPLGVQPYY 444
>gi|326494672|dbj|BAJ94455.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528325|dbj|BAJ93344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 16/93 (17%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSV-WQSHQAAPMYSGSEYATAVPGQVPP 66
+KA+ ++SRDYTV D + V A P V WQS A Y S AT+V
Sbjct: 325 NVKAHDERSRDYTVLDPS-------ARVQAPPGVVWQSTTPAGFYGSSAGATSV------ 371
Query: 67 GQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSP 99
GQVP+WNP+ Q G A+ SAS +P Q +P
Sbjct: 372 GQVPTWNPNMQRG--AFASASTSYPTQLLMANP 402
>gi|195622556|gb|ACG33108.1| hypothetical protein [Zea mays]
Length = 276
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 8 RLKAYSDKSRDYTVQD--QTLLATQQIPSVPAAPSVWQSHQ---AAPMYSGSEYATAVPG 62
+KA+ ++SRDYT+ D L A Q P + + WQ+ AAP Y+ + AT+ P
Sbjct: 138 NVKAHDERSRDYTLSDPNVQLQAAAQTPVLRSPGVAWQNTASVPAAPFYAST--ATSTP- 194
Query: 63 QVPPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
+ GQV +WNP+ QAG ++ SAS +P Q
Sbjct: 195 -IGVGQVAAWNPNMQAG--SFASASTAYPNQ 222
>gi|194695192|gb|ACF81680.1| unknown [Zea mays]
gi|414870435|tpg|DAA48992.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
gi|414870436|tpg|DAA48993.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 276
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 8 RLKAYSDKSRDYTVQD--QTLLATQQIPSVPAAPSVWQSHQ---AAPMYSGSEYATAVPG 62
+KA+ ++SRDYT+ D L A Q P + + WQ+ AAP Y+ + AT+ P
Sbjct: 138 NVKAHDERSRDYTLSDPNVQLQAAAQTPVLRSPGVAWQNTASVPAAPFYAST--ATSTP- 194
Query: 63 QVPPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
+ GQV +WNP+ QAG ++ SAS +P Q
Sbjct: 195 -IGVGQVAAWNPNMQAG--SFASASTAYPNQ 222
>gi|115453245|ref|NP_001050223.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|18921326|gb|AAL82531.1|AC084766_17 putative polypyrimidine tract-binding protein [Oryza sativa
Japonica Group]
gi|108708433|gb|ABF96228.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113548694|dbj|BAF12137.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|215692946|dbj|BAG88366.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192927|gb|EEC75354.1| hypothetical protein OsI_11790 [Oryza sativa Indica Group]
gi|222625006|gb|EEE59138.1| hypothetical protein OsJ_11035 [Oryza sativa Japonica Group]
Length = 464
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH-QAAPMYSGSEYATAVPGQVPP 66
+KA+SDKSRDYT+ + A Q P VP + WQ + QA Y+ A G
Sbjct: 329 NVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTSAGWQGNPQAGGAYAPPGAAAPNHGTT-- 386
Query: 67 GQVPSWNPSAQAGPAAYVSASGPFPGQTY 95
GQVP+WNP G + Y A G +PGQ Y
Sbjct: 387 GQVPNWNP----GNSGYAPAPGAYPGQMY 411
>gi|242079253|ref|XP_002444395.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
gi|241940745|gb|EES13890.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
Length = 462
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 13/91 (14%)
Query: 8 RLKAYSDKSRDYTVQD-QTLLATQQIPSVPAAPSV-WQSHQ---AAPMYSGSEYATAVPG 62
+KA+ ++SRDYT+ D L V ++P V WQ+ AAP Y+ + +T
Sbjct: 326 NVKAHDERSRDYTLSDPNAQLQAAAQAPVLSSPGVAWQNTASAPAAPFYASTAAST---- 381
Query: 63 QVPPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
P GQVP+WNP+ QAG + SAS +P Q
Sbjct: 382 --PVGQVPAWNPNMQAG--GFASASTAYPNQ 408
>gi|357147881|ref|XP_003574527.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Brachypodium distachyon]
Length = 459
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 8 RLKAYSDKSRDYTVQD--QTLLATQQIPSVPAAPSVWQSHQ-AAPMYSGSEYATAVPGQV 64
+KA+ ++SRDYT + + A Q P + A WQ+ AA Y S G
Sbjct: 325 NVKAHDERSRDYTASNPSAQVQAAGQAPGLSTAGVAWQNTTPAASFYPSS------AGGN 378
Query: 65 PPGQVPSWNPSAQAGPAAYVSASGPFPGQT 94
P GQVP+WNP+ Q G A+ SAS +P Q+
Sbjct: 379 PVGQVPAWNPNMQQG--AFASASTSYPTQS 406
>gi|223950081|gb|ACN29124.1| unknown [Zea mays]
gi|414870434|tpg|DAA48991.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 141
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 9 LKAYSDKSRDYTVQD--QTLLATQQIPSVPAAPSVWQSHQ---AAPMYSGSEYATAVPGQ 63
+ A+ ++SRDYT+ D L A Q P + + WQ+ AAP Y+ + AT+ P
Sbjct: 4 VTAHDERSRDYTLSDPNVQLQAAAQTPVLRSPGVAWQNTASVPAAPFYAST--ATSTPIG 61
Query: 64 VPPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
V GQV +WNP+ QAG ++ SAS +P Q
Sbjct: 62 V--GQVAAWNPNMQAG--SFASASTAYPNQ 87
>gi|186509647|ref|NP_001118547.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|332640096|gb|AEE73617.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 370
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
+KA+SDKSRDYT+ D +LL Q+ P+V + P+ WQ+ QA YSG
Sbjct: 297 NVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 344
>gi|15232047|ref|NP_186764.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|75336151|sp|Q9MAC5.1|PTBP1_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 1
gi|6714473|gb|AAF26159.1|AC008261_16 putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
gi|222423255|dbj|BAH19604.1| AT3G01150 [Arabidopsis thaliana]
gi|332640095|gb|AEE73616.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 399
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
+KA+SDKSRDYT+ D +LL Q+ P+V + P+ WQ+ QA YSG
Sbjct: 326 NVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373
>gi|3395938|gb|AAC62015.1| polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]
Length = 418
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
+KA+SDKSRDYT+ D +LL Q+ P+V + P+ WQ+ QA YSG
Sbjct: 326 NVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373
>gi|297832822|ref|XP_002884293.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
gi|297330133|gb|EFH60552.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
Length = 398
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
+KA+SDKSRDYT+ D +LLA Q+ P V A+ P+ WQ+ Q YSG
Sbjct: 326 NVKAFSDKSRDYTLPDLSLLA-QKGPGVSASAPPTGWQNPQVQTQYSG 372
>gi|115476578|ref|NP_001061885.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|42407521|dbj|BAD10638.1| putative polypyrimidine tract-binding protein homolog [Oryza sativa
Japonica Group]
gi|113623854|dbj|BAF23799.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|215695278|dbj|BAG90469.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640621|gb|EEE68753.1| hypothetical protein OsJ_27445 [Oryza sativa Japonica Group]
Length = 461
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVP--AAPSV-WQSHQAAPMYSGSEYATAVPGQV 64
+KA+ ++SRDYTV Q P + P V WQ+ + + GS A
Sbjct: 326 NVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAWQNTAPSASFYGSTAAA-----T 380
Query: 65 PPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
P GQVP+WNP+ QAG A+ SAS +P Q
Sbjct: 381 PVGQVPAWNPNMQAG--AFGSASSAYPTQ 407
>gi|326511767|dbj|BAJ92028.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 470
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH-QAAPMYS--GSEYATAVPGQV 64
+KA+SDKS+DYT+ + A Q VP + WQ + QAA Y G AV Q
Sbjct: 330 NVKAHSDKSKDYTIPEGAQQAAPQPAGVPPTTAGWQGNSQAAGPYGPPG----VAVQNQN 385
Query: 65 PPGQVPSWNPSAQAGPAAYVSASGPFPGQTY 95
QVP+WNP G + Y A G +PG Y
Sbjct: 386 TNRQVPNWNP----GNSGYPPAPGQYPGHMY 412
>gi|218201199|gb|EEC83626.1| hypothetical protein OsI_29352 [Oryza sativa Indica Group]
Length = 461
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVP--AAPSV-WQSHQAAPMYSGSEYATAVPGQV 64
+KA+ ++SRDYTV Q P + P V WQ+ + + GS A
Sbjct: 326 NVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAWQNTAPSASFYGSTAAAT----- 380
Query: 65 PPGQVPSWNPSAQAGPAAYVSASGPFPGQ 93
P GQVP+WNP+ QAG A+ SAS + Q
Sbjct: 381 PVGQVPAWNPNMQAG--AFGSASSAYTTQ 407
>gi|326502954|dbj|BAJ99105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH-QAAPMYS--GSEYATAVPGQV 64
+KA+SDKS+DYT + A Q VP + WQ + QAA Y G AV Q
Sbjct: 203 NVKAHSDKSKDYTTPEGAQQAAPQPAGVPPTTAGWQGNSQAAGPYGPPG----VAVQNQN 258
Query: 65 PPGQVPSWNPSAQAGPAAYVSASGPFPGQTY 95
QVP+WNP G + Y A G +PG Y
Sbjct: 259 TNRQVPNWNP----GNSGYPPAPGQYPGHMY 285
>gi|413922344|gb|AFW62276.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 458
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 8 RLKAYSDKSRDYTVQD-QTLLATQQIPSVPAAPSV-WQ---SHQAAPMYSGSEYATAVPG 62
+KA+ D+SRDYT+ D L V ++P V WQ S AAP Y + +T
Sbjct: 322 NVKAHDDRSRDYTLSDPNAQLQAAAQAPVISSPGVAWQNPASAPAAPFYGSTAAST---- 377
Query: 63 QVPPGQVPSWNPSAQAGPAAYVSASGPFPG 92
P GQ P+WNP+ QA + SAS +P
Sbjct: 378 --PVGQPPAWNPNMQA--PGFASASTAYPN 403
>gi|413922343|gb|AFW62275.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 462
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 8 RLKAYSDKSRDYTVQD-QTLLATQQIPSVPAAPSV-WQ---SHQAAPMYSGSEYATAVPG 62
+KA+ D+SRDYT+ D L V ++P V WQ S AAP Y + +T
Sbjct: 326 NVKAHDDRSRDYTLSDPNAQLQAAAQAPVISSPGVAWQNPASAPAAPFYGSTAAST---- 381
Query: 63 QVPPGQVPSWNPSAQAGPAAYVSASGPFPG 92
P GQ P+WNP+ QA + SAS +P
Sbjct: 382 --PVGQPPAWNPNMQA--PGFASASTAYPN 407
>gi|414867006|tpg|DAA45563.1| TPA: hypothetical protein ZEAMMB73_334584 [Zea mays]
Length = 504
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+ DKSRDYT+ + Q P + A WQ + A + G
Sbjct: 328 NVKAHGDKSRDYTIPAGVIQGAPQPPGIQATSPGWQGNLQAAG-PYAPPGAPPQNHSANG 386
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTY 95
QVP+W P G + Y A G +PGQ Y
Sbjct: 387 QVPNWTP----GNSGYSPAPGTYPGQMY 410
>gi|242040789|ref|XP_002467789.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
gi|241921643|gb|EER94787.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
Length = 486
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 8 RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
+KA+ DKSRDYT+ Q P V A WQ + A + + G
Sbjct: 328 NVKAHGDKSRDYTIPAGVTQGVPQPPGVQATSFGWQGNLQAAG-AYAPPGAPAQSHNANG 386
Query: 68 QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFA 102
Q+P+WNP G + Y G +PGQ Y P +A
Sbjct: 387 QMPNWNP----GNSVYPPGPGTYPGQMYSSPPQYA 417
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.129 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,967,366,977
Number of Sequences: 23463169
Number of extensions: 149297423
Number of successful extensions: 749258
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 12080
Number of HSP's that attempted gapping in prelim test: 685721
Number of HSP's gapped (non-prelim): 57885
length of query: 141
length of database: 8,064,228,071
effective HSP length: 105
effective length of query: 36
effective length of database: 9,895,562,622
effective search space: 356240254392
effective search space used: 356240254392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)