BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032399
         (141 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
           thaliana GN=PTB PE=2 SV=1
          Length = 399

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
            +KA+SDKSRDYT+ D +LL  Q+ P+V  +  P+ WQ+ QA   YSG
Sbjct: 326 NVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373


>sp|P08699|LEG3_RAT Galectin-3 OS=Rattus norvegicus GN=Lgals3 PE=1 SV=4
          Length = 262

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 19 YTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQA 78
          +++ D   LA    P+    P  W +   A  Y G+ Y  A PGQ PPG  P      QA
Sbjct: 5  FSLNDA--LAGSGNPNPQGWPGAWGNQPGAGGYPGASYPGAYPGQAPPGGYP-----GQA 57

Query: 79 GPAAYVSASGP--FPGQTYP 96
           P+AY   +GP  +PG T P
Sbjct: 58 PPSAYPGPTGPSAYPGPTAP 77


>sp|P16110|LEG3_MOUSE Galectin-3 OS=Mus musculus GN=Lgals3 PE=1 SV=3
          Length = 264

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 19 YTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNP---- 74
          +++ D   LA    P+    P  W +   A  Y G+ Y  A PGQ PPG  P   P    
Sbjct: 5  FSLNDA--LAGSGNPNPQGYPGAWGNQPGAGGYPGAAYPGAYPGQAPPGAYPGQAPPGAY 62

Query: 75 SAQAGPAAY--VSASGPFPGQTYP 96
            QA P+AY   +A G +PG T P
Sbjct: 63 PGQAPPSAYPGPTAPGAYPGPTAP 86


>sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens GN=LGALS3 PE=1 SV=5
          Length = 250

 Score = 29.3 bits (64), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 16 SRDYTVQDQTLLATQQIPSVPAAPSVWQSHQA-APMYSGSEYATAVPGQVPPGQVPSWNP 74
          + ++++ D   L+    P+    P  W +  A A  Y G+ Y  A PGQ PPG  P    
Sbjct: 2  ADNFSLHDA--LSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYP---- 55

Query: 75 SAQAGPAAYVSASGPFPG 92
            QA P AY  A G +PG
Sbjct: 56 -GQAPPGAYPGAPGAYPG 72


>sp|P47953|LEG3_CRILO Galectin-3 OS=Cricetulus longicaudatus GN=LGALS3 PE=2 SV=2
          Length = 245

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 19 YTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWN-PSAQ 77
          +++ D   LA    P+    P  W +   A  Y G+ Y  A PGQ PPG  P    P A 
Sbjct: 5  FSLNDA--LAGSGNPNPQGWPGAWGNQPGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAY 62

Query: 78 AGPAAYVSASGPFPGQTYPQSP 99
           GP A  +  GP PG  YP  P
Sbjct: 63 PGPTAPGAYPGPAPG-AYPGQP 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.129    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,800,237
Number of Sequences: 539616
Number of extensions: 3307921
Number of successful extensions: 16473
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 1359
Number of HSP's that attempted gapping in prelim test: 11708
Number of HSP's gapped (non-prelim): 4656
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)