Query 032399
Match_columns 141
No_of_seqs 33 out of 35
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 13:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190 Polypyrimidine tract-b 97.0 0.00028 6E-09 64.0 1.1 18 6-23 229-246 (492)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 91.1 0.11 2.4E-06 46.0 1.5 20 5-24 174-193 (481)
3 PF12426 DUF3674: RNA dependen 76.6 1.4 3E-05 28.5 1.1 17 7-23 14-32 (41)
4 KOG1924 RhoA GTPase effector D 38.3 1.3E+02 0.0028 30.6 7.2 11 125-135 590-600 (1102)
5 KOG1456 Heterogeneous nuclear 36.0 18 0.00038 33.5 1.1 21 6-26 200-220 (494)
6 PF10285 Luciferase_cat: Lucif 32.4 14 0.00031 32.0 -0.1 14 8-21 225-246 (296)
7 KOG3446 NADH:ubiquinone oxidor 25.0 20 0.00043 26.9 -0.4 13 1-13 35-47 (97)
8 KOG1190 Polypyrimidine tract-b 16.1 68 0.0015 30.0 0.9 25 5-29 373-397 (492)
9 KOG2790 Phosphoserine aminotra 15.4 72 0.0016 28.8 0.9 38 3-55 116-157 (370)
10 PF07981 Plasmod_MYXSPDY: Plas 15.4 57 0.0012 17.5 0.1 8 16-23 4-11 (17)
No 1
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.96 E-value=0.00028 Score=64.04 Aligned_cols=18 Identities=50% Similarity=0.510 Sum_probs=16.6
Q ss_pred ccceeeccCCCcccccCc
Q 032399 6 YGRLKAYSDKSRDYTVQD 23 (141)
Q Consensus 6 ~~NVKa~~DrSRDYTip~ 23 (141)
.+|||-+||||||||-|+
T Consensus 229 ~LnvKynndkSRDyTnp~ 246 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPD 246 (492)
T ss_pred cceeeccccccccccCCC
Confidence 589999999999999877
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=91.11 E-value=0.11 Score=46.02 Aligned_cols=20 Identities=40% Similarity=0.395 Sum_probs=17.6
Q ss_pred cccceeeccCCCcccccCch
Q 032399 5 RYGRLKAYSDKSRDYTVQDQ 24 (141)
Q Consensus 5 ~~~NVKa~~DrSRDYTip~~ 24 (141)
..+|||-++|||||||.|+-
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l 193 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDL 193 (481)
T ss_pred CCceeEecccCCCCCcCCCC
Confidence 46999999999999999763
No 3
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=76.63 E-value=1.4 Score=28.48 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred ccee--eccCCCcccccCc
Q 032399 7 GRLK--AYSDKSRDYTVQD 23 (141)
Q Consensus 7 ~NVK--a~~DrSRDYTip~ 23 (141)
-|+| .+.+|.|+|.|||
T Consensus 14 FNLKFhi~~~k~~~y~IP~ 32 (41)
T PF12426_consen 14 FNLKFHIGGPKTQPYYIPD 32 (41)
T ss_pred hceeeeeCCcccccccCCC
Confidence 4778 6799999999998
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=38.26 E-value=1.3e+02 Score=30.65 Aligned_cols=11 Identities=36% Similarity=0.534 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q 032399 125 VRPGGASPPGH 135 (141)
Q Consensus 125 m~Pggapp~g~ 135 (141)
+.+||.||+..
T Consensus 590 g~~Gg~ppPP~ 600 (1102)
T KOG1924|consen 590 GFLGGPPPPPP 600 (1102)
T ss_pred CCCCCCCCCCC
Confidence 45666555443
No 5
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=36.02 E-value=18 Score=33.53 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.0
Q ss_pred ccceeeccCCCcccccCchhh
Q 032399 6 YGRLKAYSDKSRDYTVQDQTL 26 (141)
Q Consensus 6 ~~NVKa~~DrSRDYTip~~~~ 26 (141)
-+||--|+-.+||||+|+-..
T Consensus 200 rlnV~knd~DtwDyTlp~~~~ 220 (494)
T KOG1456|consen 200 RLNVQKNDKDTWDYTLPDLRG 220 (494)
T ss_pred eeeeeecCCccccccCCCCCC
Confidence 478988888889999998433
No 6
>PF10285 Luciferase_cat: Luciferase catalytic domain; InterPro: IPR018804 This entry represents the catalytic domain of dinoflagellate luciferase. Luciferase is involved in catalysing the light emitting reaction in bioluminescence. The structure of this domain has been solved []. The core part of the domain is a 10 stranded beta barrel that is structurally similar to lipocalins and FABP []. ; PDB: 1VPR_A.
Probab=32.44 E-value=14 Score=31.95 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=8.4
Q ss_pred ceeeccC--------CCccccc
Q 032399 8 RLKAYSD--------KSRDYTV 21 (141)
Q Consensus 8 NVKa~~D--------rSRDYTi 21 (141)
-||+.|| .|||||.
T Consensus 225 yvkvsndpes~~iplqsrdyta 246 (296)
T PF10285_consen 225 YVKVSNDPESKPIPLQSRDYTA 246 (296)
T ss_dssp EEEEES---S--------HHHH
T ss_pred EEEecCCCCCCcccccccccHh
Confidence 3799998 5999996
No 7
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=25.02 E-value=20 Score=26.85 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=10.1
Q ss_pred Cccccccceeecc
Q 032399 1 MIEKRYGRLKAYS 13 (141)
Q Consensus 1 ~~~~~~~NVKa~~ 13 (141)
.|||+|.|+|--|
T Consensus 35 fvEk~Y~~lKkaN 47 (97)
T KOG3446|consen 35 FVEKFYVNLKKAN 47 (97)
T ss_pred HHHHhhhhhhhcC
Confidence 3899999998443
No 8
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=16.14 E-value=68 Score=30.02 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=20.1
Q ss_pred cccceeeccCCCcccccCchhhhhh
Q 032399 5 RYGRLKAYSDKSRDYTVQDQTLLAT 29 (141)
Q Consensus 5 ~~~NVKa~~DrSRDYTip~~~~~~~ 29 (141)
.+.++|..+|++||||.+.......
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLh 397 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLH 397 (492)
T ss_pred ccccCCCCCCccccccccCCCCchh
Confidence 4678899999999999988665544
No 9
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=15.43 E-value=72 Score=28.83 Aligned_cols=38 Identities=34% Similarity=0.623 Sum_probs=27.6
Q ss_pred cccccceeeccCCCcccc---cCchhhhhhccCCCCCCCCCccc-cCCCCCCccCCc
Q 032399 3 EKRYGRLKAYSDKSRDYT---VQDQTLLATQQIPSVPAAPSVWQ-SHQAAPMYSGSE 55 (141)
Q Consensus 3 ~~~~~NVKa~~DrSRDYT---ip~~~~~~~~q~p~v~~~~~~wq-n~qaa~~Y~~~~ 55 (141)
.|||+|++.---+..+|| ||| ...|- ++-|..+|=|.+
T Consensus 116 Akk~~~~~~V~~~~k~y~ygkvPd---------------~~~w~~~~da~yvyyCaN 157 (370)
T KOG2790|consen 116 AKKYGTPNIVIPKLKSYTYGKVPD---------------PSTWELNPDASYVYYCAN 157 (370)
T ss_pred HHhhCCceEEeccccccccCcCCC---------------hhhcccCCCccEEEEecC
Confidence 378999976666778887 777 44566 788888886644
No 10
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=15.41 E-value=57 Score=17.49 Aligned_cols=8 Identities=50% Similarity=0.650 Sum_probs=6.0
Q ss_pred CcccccCc
Q 032399 16 SRDYTVQD 23 (141)
Q Consensus 16 SRDYTip~ 23 (141)
|-|||++-
T Consensus 4 SPdytL~~ 11 (17)
T PF07981_consen 4 SPDYTLRL 11 (17)
T ss_pred CCCceEEE
Confidence 77999753
Done!