Query 032399
Match_columns 141
No_of_seqs 33 out of 35
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 22:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vpr_A Luciferase; beta barrel 24.7 18 0.00061 31.0 0.4 14 8-21 303-324 (374)
2 4ekx_C 14L protein; binding pr 7.0 1.1E+02 0.0039 22.1 0.4 11 1-11 1-11 (116)
3 3qbt_B Inositol polyphosphate 6.8 67 0.0023 23.1 -1.0 25 5-29 35-59 (140)
4 2vty_A Protein F1, F1L; BCL-2, 5.5 80 0.0027 24.4 -1.3 12 10-21 95-106 (182)
5 1pei_A PEPC22; transferase, nu 5.4 51 0.0017 18.6 -1.8 7 13-19 14-20 (26)
6 2wz8_A Cellulosome protein doc 5.2 2.1E+02 0.007 20.8 0.9 20 3-22 84-103 (156)
7 2keg_A PLNK; protein, peptide, 5.2 1.8E+02 0.006 16.8 0.4 9 12-20 23-31 (32)
8 2i9s_A MESD, mesoderm developm 4.6 1.7E+02 0.0059 20.7 0.1 12 9-20 22-33 (97)
9 1gvp_A Gene V protein; DNA-bin 4.5 1.7E+02 0.0058 20.4 0.0 16 2-21 13-28 (87)
10 2b8m_A Hypothetical protein MJ 4.3 2.9E+02 0.01 17.6 1.1 15 1-15 2-16 (117)
No 1
>1vpr_A Luciferase; beta barrel, fatty acid binding protein, lipocalin, PH regulation, luminescent protein; 1.80A {Lingulodinium polyedrum} SCOP: b.60.1.7
Probab=24.70 E-value=18 Score=30.97 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=11.8
Q ss_pred ceeeccC--------CCccccc
Q 032399 8 RLKAYSD--------KSRDYTV 21 (141)
Q Consensus 8 NVKa~~D--------rSRDYTi 21 (141)
-||+.|| .|||||.
T Consensus 303 yvkv~~dp~s~pip~qsrd~ta 324 (374)
T 1vpr_A 303 YVKVSNDPESDPIPLQSRDYTA 324 (374)
T ss_dssp EEEEESCCCSCCCCCCCCHHHH
T ss_pred EEEecCCCCCCCcccccccchh
Confidence 4899998 5999996
No 2
>4ekx_C 14L protein; binding protein, beta trefoil, immunoglobulin fold, YLDV, YA yatapoxvirus, cytokine signaling, cytokine-viral prote complex; 1.75A {Yaba-like disease virus} PDB: 4eee_A
Probab=7.01 E-value=1.1e+02 Score=22.14 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.2
Q ss_pred Cccccccceee
Q 032399 1 MIEKRYGRLKA 11 (141)
Q Consensus 1 ~~~~~~~NVKa 11 (141)
|++||.+||++
T Consensus 1 ~~~~r~~~v~v 11 (116)
T 4ekx_C 1 MVKTRSVNIHV 11 (116)
T ss_dssp ---CCEEEEEE
T ss_pred CcceeeEEEEe
Confidence 67888888874
No 3
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=6.76 E-value=67 Score=23.06 Aligned_cols=25 Identities=4% Similarity=0.167 Sum_probs=20.5
Q ss_pred cccceeeccCCCcccccCchhhhhh
Q 032399 5 RYGRLKAYSDKSRDYTVQDQTLLAT 29 (141)
Q Consensus 5 ~~~NVKa~~DrSRDYTip~~~~~~~ 29 (141)
.+|+||...+++|..||-|-+...+
T Consensus 35 dFG~v~~~~~~~~~l~I~Ntg~vpa 59 (140)
T 3qbt_B 35 VFENVKFRQLQKEKFQISNNGQVPC 59 (140)
T ss_dssp EEEEECBTCCEEEEEEEEECSSSCE
T ss_pred EeeeceeeeeeeeEEEEEcCCccce
Confidence 4789999999999999988655533
No 4
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=5.46 E-value=80 Score=24.38 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=5.5
Q ss_pred eeccCCCccccc
Q 032399 10 KAYSDKSRDYTV 21 (141)
Q Consensus 10 Ka~~DrSRDYTi 21 (141)
|++||-|||-.|
T Consensus 95 kv~ndy~rd~ni 106 (182)
T 2vty_A 95 KVSNDYNRDMNI 106 (182)
T ss_dssp HHHHHC------
T ss_pred hcCcccccchhh
Confidence 789999999776
No 5
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=5.36 E-value=51 Score=18.60 Aligned_cols=7 Identities=43% Similarity=0.990 Sum_probs=5.0
Q ss_pred cCCCccc
Q 032399 13 SDKSRDY 19 (141)
Q Consensus 13 ~DrSRDY 19 (141)
-|||||.
T Consensus 14 e~kSre~ 20 (26)
T 1pei_A 14 EEKSREF 20 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4788875
No 6
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=5.24 E-value=2.1e+02 Score=20.78 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=13.8
Q ss_pred cccccceeeccCCCcccccC
Q 032399 3 EKRYGRLKAYSDKSRDYTVQ 22 (141)
Q Consensus 3 ~~~~~NVKa~~DrSRDYTip 22 (141)
+.|.+.|.+|.++.++.++|
T Consensus 84 ~~r~~~v~VNG~~~~~v~fp 103 (156)
T 2wz8_A 84 VDRYCSISVNGGPEKGHYFF 103 (156)
T ss_dssp CCEEEEEEETTCCCEEEEEC
T ss_pred CcceEEEEECCceeeEEEeC
Confidence 35777788887776666654
No 7
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=5.18 E-value=1.8e+02 Score=16.83 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=6.2
Q ss_pred ccCCCcccc
Q 032399 12 YSDKSRDYT 20 (141)
Q Consensus 12 ~~DrSRDYT 20 (141)
--.-||||.
T Consensus 23 vlggsrdyn 31 (32)
T 2keg_A 23 VLGGSRDYN 31 (32)
T ss_dssp HTSSSCSCC
T ss_pred HhcCccccC
Confidence 345689984
No 8
>2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus}
Probab=4.59 E-value=1.7e+02 Score=20.73 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=10.2
Q ss_pred eeeccCCCcccc
Q 032399 9 LKAYSDKSRDYT 20 (141)
Q Consensus 9 VKa~~DrSRDYT 20 (141)
||...|+|||.|
T Consensus 22 V~v~g~~s~~e~ 33 (97)
T 2i9s_A 22 VTVSGNPTEKET 33 (97)
T ss_dssp EECCSSSSHHHH
T ss_pred EEecCCCCHHHH
Confidence 788899999976
No 9
>1gvp_A Gene V protein; DNA-binding protein, DNA replication; 1.60A {Escherichia coli} SCOP: b.40.4.7 PDB: 1vqb_A 2gn5_A 1vqj_A 1vqi_A 1vqg_A 1vqh_A 1vqf_A 1yhb_A 1yha_A 2gva_A 2gvb_A 1vqd_A 1vqe_A 1gkh_A 1vqc_A 1ae2_A 1vqa_A 1ae3_A
Probab=4.55 E-value=1.7e+02 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=10.6
Q ss_pred ccccccceeeccCCCccccc
Q 032399 2 IEKRYGRLKAYSDKSRDYTV 21 (141)
Q Consensus 2 ~~~~~~NVKa~~DrSRDYTi 21 (141)
++.|.+|.| +|| .|||
T Consensus 13 v~eR~~~~k--~gk--~~~~ 28 (87)
T 1gvp_A 13 FTTRSGVSR--QGK--PYSL 28 (87)
T ss_dssp CEEEEEECT--TSC--EEEE
T ss_pred EEEeecccc--CCC--ceEE
Confidence 356677776 777 6666
No 10
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=4.26 E-value=2.9e+02 Score=17.62 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=0.0
Q ss_pred CccccccceeeccCC
Q 032399 1 MIEKRYGRLKAYSDK 15 (141)
Q Consensus 1 ~~~~~~~NVKa~~Dr 15 (141)
||||+|-.-+..+++
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (117)
T 2b8m_A 2 MIEKVYEFKRDAKTK 16 (117)
T ss_dssp CSSCCCCCCSSCCSC
T ss_pred hhheeeeeecCCCcc
Done!