Query 032399
Match_columns 141
No_of_seqs 33 out of 35
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 22:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032399.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032399hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vpra1 b.60.1.7 (A:868-1218) 40.8 3.1 0.00022 33.3 0.4 14 8-21 301-322 (351)
2 d1mmsa2 d.47.1.1 (A:8-70) Ribo 25.5 9.2 0.00067 23.8 0.6 12 10-21 52-63 (63)
3 d1adta3 g.51.1.1 (A:386-529) S 11.9 24 0.0018 25.2 0.2 24 6-29 70-94 (144)
4 d1vh9a_ d.38.1.5 (A:) Hypothet 11.4 18 0.0013 23.8 -0.6 18 1-18 2-19 (138)
5 d2gycg2 d.47.1.1 (G:2-72) Ribo 8.3 47 0.0034 20.8 0.5 12 9-20 37-48 (71)
6 d1vh5a_ d.38.1.5 (A:) Hypothet 8.0 30 0.0022 22.7 -0.6 20 1-20 2-21 (138)
7 d2diga1 b.34.9.1 (A:8-62) Lami 5.4 79 0.0057 19.0 0.4 11 11-21 29-39 (55)
8 d2onsa1 c.94.1.1 (A:32-342) Mo 4.9 75 0.0055 20.1 0.1 12 2-13 23-34 (311)
9 d2piaa1 b.43.4.2 (A:1-103) Pht 4.5 90 0.0066 19.3 0.3 18 6-23 44-61 (103)
10 d2f71a1 c.45.1.2 (A:2-298) Tyr 4.5 93 0.0068 22.5 0.4 14 3-17 42-55 (297)
No 1
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase {Lingulodinium polyedrum [TaxId: 160621]}
Probab=40.82 E-value=3.1 Score=33.29 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=12.0
Q ss_pred ceeeccC--------CCccccc
Q 032399 8 RLKAYSD--------KSRDYTV 21 (141)
Q Consensus 8 NVKa~~D--------rSRDYTi 21 (141)
-||+.|| .|||||.
T Consensus 301 yvkvsndpes~pip~qsrdyta 322 (351)
T d1vpra1 301 YVKVSNDPESDPIPLQSRDYTA 322 (351)
T ss_dssp EEEEESCCCSCCCCCCCCHHHH
T ss_pred EEEecCCCCCCcccccccchHh
Confidence 4899999 5999997
No 2
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.52 E-value=9.2 Score=23.85 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.4
Q ss_pred eeccCCCccccc
Q 032399 10 KAYSDKSRDYTV 21 (141)
Q Consensus 10 Ka~~DrSRDYTi 21 (141)
.+++|||-|++|
T Consensus 52 ~v~~DrsF~f~i 63 (63)
T d1mmsa2 52 TVYEDKSFTFII 63 (63)
T ss_dssp EECTTSCEEEEE
T ss_pred EEeCCCcEEEeC
Confidence 378999988775
No 3
>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=11.86 E-value=24 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=11.8
Q ss_pred ccceee-ccCCCcccccCchhhhhh
Q 032399 6 YGRLKA-YSDKSRDYTVQDQTLLAT 29 (141)
Q Consensus 6 ~~NVKa-~~DrSRDYTip~~~~~~~ 29 (141)
|-|.|+ +..|.+|+.|..+.++.+
T Consensus 70 ~rnsra~~~~knCdfKISa~Dl~~A 94 (144)
T d1adta3 70 YRNSRAQGGGPNCDFKISAPDLLNA 94 (144)
T ss_dssp -----------CCCCEEEHHHHHHH
T ss_pred ccCcccCCCCCCceEEechHHHHHH
Confidence 568887 789999999988877655
No 4
>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli [TaxId: 562]}
Probab=11.44 E-value=18 Score=23.84 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.1
Q ss_pred CccccccceeeccCCCcc
Q 032399 1 MIEKRYGRLKAYSDKSRD 18 (141)
Q Consensus 1 ~~~~~~~NVKa~~DrSRD 18 (141)
||+||..+++--|+++++
T Consensus 2 mi~~~~~tl~~l~~~~~~ 19 (138)
T d1vh9a_ 2 LIWKRHLTLDELNATSDN 19 (138)
T ss_dssp CCCSSCCCHHHHHHTSTT
T ss_pred CcccCCCCHHHHHhhCcc
Confidence 899999998887777775
No 5
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.32 E-value=47 Score=20.81 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.0
Q ss_pred eeeccCCCcccc
Q 032399 9 LKAYSDKSRDYT 20 (141)
Q Consensus 9 VKa~~DrSRDYT 20 (141)
+|.+|||..||-
T Consensus 37 ~k~fN~~T~~~~ 48 (71)
T d2gycg2 37 CKAFNAKTDSIE 48 (71)
T ss_dssp STTTTTTSCSSC
T ss_pred HHHHHHHhhccC
Confidence 578999999974
No 6
>d1vh5a_ d.38.1.5 (A:) Hypothetical protein YdiI {Escherichia coli [TaxId: 562]}
Probab=7.99 E-value=30 Score=22.68 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=15.9
Q ss_pred CccccccceeeccCCCcccc
Q 032399 1 MIEKRYGRLKAYSDKSRDYT 20 (141)
Q Consensus 1 ~~~~~~~NVKa~~DrSRDYT 20 (141)
||+||..+++.-|+.+++.-
T Consensus 2 ~~~~~~~~~e~ln~~~~~~~ 21 (138)
T d1vh5a_ 2 LIWKRKITLEALNAMGEGNM 21 (138)
T ss_dssp CCCSSCCCHHHHHHTTTTSH
T ss_pred CCccCCCCHHHHHhhcccch
Confidence 78999999888888777643
No 7
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.39 E-value=79 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=9.8
Q ss_pred eccCCCccccc
Q 032399 11 AYSDKSRDYTV 21 (141)
Q Consensus 11 a~~DrSRDYTi 21 (141)
-+++||+-||+
T Consensus 29 s~d~~~~~YtV 39 (55)
T d2diga1 29 SHDSTSQLYTV 39 (55)
T ss_dssp EEETTTTEEEE
T ss_pred eecCcceEEEE
Confidence 68899999997
No 8
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.88 E-value=75 Score=20.10 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=8.8
Q ss_pred ccccccceeecc
Q 032399 2 IEKRYGRLKAYS 13 (141)
Q Consensus 2 ~~~~~~NVKa~~ 13 (141)
.||+|.|||++=
T Consensus 23 Fe~~~P~I~V~~ 34 (311)
T d2onsa1 23 FEEKHPNVEVQT 34 (311)
T ss_dssp HHHHCTTEEEEE
T ss_pred HHHHCcCcEEEE
Confidence 478888888654
No 9
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=4.53 E-value=90 Score=19.30 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=13.7
Q ss_pred ccceeeccCCCcccccCc
Q 032399 6 YGRLKAYSDKSRDYTVQD 23 (141)
Q Consensus 6 ~~NVKa~~DrSRDYTip~ 23 (141)
|..|+.-++..|-|||-.
T Consensus 44 ~v~v~~~~~~~R~YSl~s 61 (103)
T d2piaa1 44 NLTVAVPNGSRRTYSLCN 61 (103)
T ss_dssp EEEEECTTSCEEEEECCS
T ss_pred eEEEEEecceeEEEEEec
Confidence 567777778889999843
No 10
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]}
Probab=4.47 E-value=93 Score=22.48 Aligned_cols=14 Identities=36% Similarity=0.759 Sum_probs=9.3
Q ss_pred cccccceeeccCCCc
Q 032399 3 EKRYGRLKAYSDKSR 17 (141)
Q Consensus 3 ~~~~~NVKa~~DrSR 17 (141)
+.||.||..+ |++|
T Consensus 42 KNRy~~i~p~-D~tR 55 (297)
T d2f71a1 42 RNRYRDVSPF-DHSR 55 (297)
T ss_dssp GCSCTTCCCC-GGGE
T ss_pred cCCCCCCCCC-cCcE
Confidence 3488888776 5555
Done!