BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032400
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 83/103 (80%), Gaps = 4/103 (3%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V+F GP+ + Y+GGVWK+RV+LPD
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFC 100
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ +++
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLT 121
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 73/97 (75%)
Query: 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSI 66
R++ D KL+M+ Y +E+ N Q+F V F+GP ++Y+GG+WK+ V LPD YP+ SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 67 GFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFCEKY 103
GF+NK+ HPNVDE SGSVCLDVINQTW+P++ +
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVF 102
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Query: 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
++RREMD M+L S KV +D + EF+VEF GP+ + Y+ G W + V+LP YP+KSP
Sbjct: 14 NRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEF 99
SIGF N+I HPNVDE SGSVCLDVINQTW+PM++
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQL 107
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +C
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 87
Query: 86 LDVINQTWSPMFEF 99
LDV+ WSP +
Sbjct: 88 LDVLKTNWSPALQI 101
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +C
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 89
Query: 86 LDVINQTWSPMFEF 99
LDV+ WSP +
Sbjct: 90 LDVLKTNWSPALQI 103
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 81 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 140
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 141 TGAICLDILKDQWA 154
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 32 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 91
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 92 TGAICLDILKDQWA 105
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L G +CLD++
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 93
Query: 92 TWSPMFEF 99
WSP +
Sbjct: 94 KWSPALQI 101
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 45 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 104
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 105 TGAICLDILKDQWA 118
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L G +CLD++
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 95
Query: 92 TWSPMFEF 99
WSP +
Sbjct: 96 KWSPALQI 103
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 29 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 88
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 89 TGAICLDILKDQWA 102
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L G +CLD++
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 98
Query: 92 TWSPMFEF 99
WSP +
Sbjct: 99 KWSPALQI 106
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L G +CLD++
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 96
Query: 92 TWSPMFEF 99
WSP +
Sbjct: 97 KWSPALQI 104
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 51/74 (68%)
Query: 21 KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80
KV+++++ E E GP ++ Y+GG +++ +++P+ YP+ P + F+ KI+HPN+ +
Sbjct: 30 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 89
Query: 81 SGSVCLDVINQTWS 94
+G++CLD++ W+
Sbjct: 90 TGAICLDILKDQWA 103
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 32 FYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQ 91
F+V GP++S ++GG +K+ + LP+ YP +P + F+ KIYHPNVD+L G +CLD++
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 91
Query: 92 TWSPMFEF 99
WSP +
Sbjct: 92 KWSPALQI 99
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHPN+D L G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIS 87
Query: 86 LDVINQTWSPMFEF 99
LDV+ WSP +
Sbjct: 88 LDVLKTNWSPALQI 101
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 44 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMF 97
CLD++ WSP
Sbjct: 103 CLDILRSQWSPAL 115
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 28 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMF 97
CLD++ WSP
Sbjct: 87 CLDILRSQWSPAL 99
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQTWSPMF 97
CLD++ WSP
Sbjct: 91 CLDILRSQWSPAL 103
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + + F + NGP + Y+GG +K+ + LP+ YP + P + F+ KIYHPN+D+L G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP +
Sbjct: 85 CLDILKDKWSPALQI 99
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ + + F + NGP + Y+GG +K+ + LP+ YP + P + F+ KIYHPN+D+L G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP +
Sbjct: 85 CLDILKDKWSPALQI 99
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 103 CLDILRSQWSPALTI 117
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 31 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 90 CLDILRSQWSPALTI 104
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 95 CLDILRSQWSPALTI 109
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 95 CLDILRSQWSPALTI 109
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 87 CLDILRSQWSPALTI 101
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 85 CLDILRSQWSPALTI 99
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 87 CLDILRSQWSPALTI 101
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 87 CLDILRSQWSPALTI 101
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 84 CLDILRSQWSPALTI 98
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 34 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 92
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 93 CLDILRSQWSPALTI 107
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP ES YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMF 97
CLD++ WSP
Sbjct: 88 CLDILRSQWSPAL 100
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGGV+ + + P YP+K P + F KIYHPN++ +GS+
Sbjct: 31 VGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMF 97
CLD++ WSP
Sbjct: 90 CLDILRSQWSPAL 102
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 26 NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85
+D ++ F V GP++S Y+ G++++ + LPD YP ++P + F+ KIYHP +D L G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRL-GRIS 87
Query: 86 LDVINQTWSPMFEF 99
LDV+ WSP +
Sbjct: 88 LDVLKTNWSPALQI 101
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 87 CLDILRSQWSPALTI 101
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD + WSP
Sbjct: 87 CLDALRSQWSPALTI 101
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFEF 99
CLD++ W P
Sbjct: 87 CLDILRSQWGPALTI 101
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 3 SPSKRREMDLMKLMMS-DYKVEMINDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAY 59
S SKR + +L L+MS D + DG + ++ +GPK++ Y+ +K+ +E P Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 60 PYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98
PYK P + F +HPNVD+ SG++CLD++ + W+ ++
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYD 106
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 6 KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPS 65
R DL K S + D + + GP +S Y GGV+ + + P YP+K P
Sbjct: 7 NRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPK 66
Query: 66 IGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFCE 101
+ F +IYHPN++ +GS+CLD++ WSP +
Sbjct: 67 VNFTTRIYHPNINS-NGSICLDILRDQWSPALTISK 101
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ ++ G +K+ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFC 100
+ YP K P++ F++K++HPNV GS+CLD++ WSP ++
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVA 103
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S Y GGV+ + + P YP+K P I F KIYHPN++ +G++
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA-NGNI 85
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 86 CLDILKDQWSPALTL 100
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP++S Y GGV+ + + P YP+K P + F KIYHPN++ G++
Sbjct: 46 VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS-QGAI 104
Query: 85 CLDVINQTWSPMFEFCE 101
CLD++ WSP +
Sbjct: 105 CLDILKDQWSPALTISK 121
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ ++ G +K+ +E
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFC 100
+ YP K P++ F++K++HPNV GS+CLD++ WSP ++
Sbjct: 64 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVA 106
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S YQGG++ + V P YP+K+P + F+ K+YHPN+++ +G +
Sbjct: 29 VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVI 87
Query: 85 CLDVINQTWSPMFEF 99
CLD++ WSP
Sbjct: 88 CLDILKDQWSPALTL 102
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D + + GP +S+YQGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQTWSPMF 97
LD++ WSP
Sbjct: 91 KLDILRSQWSPAL 103
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFEFCE 101
LD++ WSP + +
Sbjct: 84 SLDILRSQWSPALKISK 100
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMFEFCE 101
LD++ WSP +
Sbjct: 88 SLDILRSQWSPALTISK 104
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
GP+ + Y+GG + + + +P+ YPY P I FV KI+HPN+ +G++CLDV+ WSP
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPAL 120
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFEFCE 101
LD++ WSP +
Sbjct: 85 SLDILRSQWSPALTISK 101
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFEFCE 101
LD++ WSP +
Sbjct: 103 XLDILRSQWSPALTISK 119
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP 95
F GP + Y+GG + + +E+P YP+K P + F K+YHPN+ ++G++CLD++ WSP
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSP 97
Query: 96 MFEF 99
+
Sbjct: 98 VITL 101
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMF 97
LD++ WSP
Sbjct: 87 SLDILRSQWSPAL 99
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP 95
F GP + Y+GG + + +E+P YP+K P + F K+YHPN+ ++G++CLD++ WSP
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSP 98
Query: 96 MFEF 99
+
Sbjct: 99 VITL 102
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
MS+P++RR M K + D V + N+ MQ V F GP+ + ++ G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIF-GPEGTPFEDGTFKLVIEF 59
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98
+ YP K P++ F++K++HPNV GS+CLD++ WSP ++
Sbjct: 60 SEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYD 101
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+ D M + GP +S YQGGV+ + + P YP+K P + F +IYHP ++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS-NGSI 84
Query: 85 CLDVINQTWSPMFEFCE 101
LD++ WSP +
Sbjct: 85 SLDILRSQWSPALTISK 101
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFN----GPKESSYQGGVWKIRVELP 56
MS+P+++R M K + D + + +N GP ++ + GG +K+ ++
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98
+ YP K P++ FV++++HPN+ GS+CLD++ WSP+++
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYD 101
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
GP + Y+GG + + + +P YPY P + FV KI+HPN+ +G++CLD++ WSP
Sbjct: 83 GPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL 142
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 1 MSSPSKRREMDLMKLMMSD----YKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELP 56
MS+P++RR M K M D + D + + GP ++ Y+ G +++ +E
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFC 100
+ YP K P + F+++++HPNV +G +CLD++ W+P ++
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVA 103
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 6 KRREMDLMKLMMS-DYKVEMI--NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYK 62
KR + +LM LMMS D + +D + ++ +G + Y+ +K+ +E P YPY
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98
+P++ F+ YHPNVD G++ LD++ + WS +++
Sbjct: 93 APTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYD 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86
D M + + G + Y+ GV+K+ V +P+ YP++ P I F+ IYHPN+D +G +CL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICL 89
Query: 87 DVI 89
DV+
Sbjct: 90 DVL 92
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI-NQTWSPMF 97
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I ++ W P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 98 EFCE 101
+ C+
Sbjct: 99 KTCQ 102
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI-NQTWSPMF 97
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I ++ W P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 98 EFCE 101
+ C+
Sbjct: 102 KTCQ 105
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 59/97 (60%), Gaps = 9/97 (9%)
Query: 1 MSSPSKRREMDLMKLM------MSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRV 53
M SPS ++ + L++L + ++V ++++G + + V GP + Y+GG +K R+
Sbjct: 3 MGSPSSQKAL-LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 61
Query: 54 ELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN 90
+ P YPY P+ F+ K++HPN+ E +G VC+ +++
Sbjct: 62 KFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILH 97
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 1 MSSPSKRREMDLMKLMMS---DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
+S+ +KR + +L + + + D + E+ GP S Y+GGV+ + +
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 58 AYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEF 99
YP+K P + F +IYH N++ G +CLD++ WSP
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTI 146
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSP 95
P Y G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ + W P
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKP 97
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSP 95
P Y G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ + W P
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKP 99
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 2 SSPSKRREMDLMKLMMS---DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDA 58
S+ +KR + +L ++ + + D + E+ GP S Y+GGV+ + +
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 59 YPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEF 99
YP+K P + F +IYH N++ G +CLD++ WSP
Sbjct: 62 YPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTI 101
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
+R+ +L K + + +I+D + + V GP ++ Y+GGV+K + P YP + P
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFEFCEKYAKPED 108
+ F+ +I+HPNVD+ +G VC+ ++++ + Y KPE+
Sbjct: 83 KMKFITEIWHPNVDK-NGDVCISILHEPGEDKY----GYEKPEE 121
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 20 YKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78
++V ++++G + + V GP + Y+GG +K R++ P YPY P+ F+ K++HPN+
Sbjct: 24 FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 83
Query: 79 ELSGSVCLDVIN 90
E +G VC+ +++
Sbjct: 84 E-TGDVCISILH 94
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64
K++ D+ ++ + + +++D + ++ V GP ++ Y+GG +K ++ P YP K P
Sbjct: 9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 68
Query: 65 SIGFVNKIYHPNVDELSGSVCLDVIN 90
+ F+++I+HPN+D+ G+VC+ +++
Sbjct: 69 KMKFISEIWHPNIDK-EGNVCISILH 93
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDV 88
+Q++ G + +++ GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 98
Query: 89 IN--QTWSPMFEF 99
+N Q W P
Sbjct: 99 LNEDQDWRPAITL 111
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDV 88
+Q++ G + +++ GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 96
Query: 89 IN--QTWSPMFEF 99
+N Q W P
Sbjct: 97 LNEDQDWRPAITL 109
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEW 113
Query: 94 SPMFEF 99
+P+++
Sbjct: 114 TPVWDL 119
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMFEF 99
+P+++
Sbjct: 114 TPVWDL 119
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVIN-QTW 93
+GP ++ Y+ ++I +E+P +YP P I F+ N I H NV +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMFEF 99
+P+++
Sbjct: 114 TPVWDL 119
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98
P E Y G ++ + YP + P + + KI+HPN+D L G+VCL+++ + WSP +
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALD 130
Query: 99 F 99
Sbjct: 131 L 131
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDV 88
+ + V GP+ + Y GG++++++ L +P P F+ KI+HPNV +G +C++V
Sbjct: 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNV 100
Query: 89 INQTWS 94
+ + W+
Sbjct: 101 LKRDWT 106
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 18 SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77
SD ++++N + V G ++S++GG++K+ + P+ YP + P F ++HPNV
Sbjct: 38 SDGGLDLMN-----WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV 92
Query: 78 DELSGSVCLDVINQT--WSP 95
SG+VCL ++N+ W P
Sbjct: 93 YP-SGTVCLSILNEEEGWKP 111
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 25 INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
+++ M E+ VE G + S +QG V+++ + Y Y P + F+ +HPNVD +G
Sbjct: 48 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107
Query: 85 CLDVINQ 91
C+D ++
Sbjct: 108 CIDFLDN 114
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQT------ 92
P E YQGG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP 95
W+P
Sbjct: 112 WAP 114
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQT------ 92
P E YQGG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP 95
W+P
Sbjct: 112 WAP 114
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
P E Y+ G + ++ YP+ P + +YHPN+D L G+VCL+++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID-LEGNVCLNILREDWKPVL 100
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRP 108
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 106
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 105
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 110
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 39 PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMF 97
P E Y+ G + ++ YP+ P + +YHPN+D L G+V L+++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LEGNVALNILREDWKPVL 120
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 36 FNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP 95
GP ++ Y GV+ ++E P YP P + F I HPN+ +G VC+ +++ SP
Sbjct: 41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILH---SP 96
Query: 96 -----MFEFCEKYAKP 106
M+E E+ P
Sbjct: 97 GDDPNMYELAEERWSP 112
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HP V SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRP 108
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 1 MSSPSKRREMDLMKLMMS-----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVEL 55
M+S KR + +L+ L + + + + ++ V+ G + Y+G +++ +
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 56 PDAYPYKSPSIGFV--NKIYHPNVDELSGSVCLDVINQTWSP 95
YP+ SP + F N HP+V +G +CL ++ + WSP
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSP 120
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 27 DGMQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
D + + ++ P +S Y G +++ V D YP++ P++ FV +Y P V G +
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGI 105
Query: 85 CLDVINQTWSP 95
C ++N W+P
Sbjct: 106 CDRMVNDFWTP 116
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRP 105
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN-------------QTWSP-------MFEFC 100
P + F +++HPN+ G VC+ +++ + WSP +
Sbjct: 65 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 101 EKYAKPEDIGGAT 113
A+P D GA
Sbjct: 124 SMLAEPNDESGAN 136
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN-------------QTWSP-------MFEFC 100
P + F +++HPN+ G VC+ +++ + WSP +
Sbjct: 69 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 127
Query: 101 EKYAKPEDIGGAT 113
A+P D GA
Sbjct: 128 SMLAEPNDESGAN 140
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVI--NQTWSP 95
G K + ++GG++K+R+ D YP P F ++HPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRP 105
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN-------------QTWSP-------MFEFC 100
P + F +++HPN+ G VC+ +++ + WSP +
Sbjct: 68 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 126
Query: 101 EKYAKPEDIGGAT 113
A+P D GA
Sbjct: 127 SMLAEPNDESGAN 139
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 13 MKLMMSDYKVEMIN--DGM------QEFYVEFN----GPKESSYQGGVWKIRVELPDAYP 60
+K +M++YK +N +G+ +E + E+ GP+++ ++ GV+ + P YP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 61 YKSPSIGFVNKIYHPNVDELSGSVCLDVIN-------------QTWSP-------MFEFC 100
P + F +++HPN+ G VC+ +++ + WSP +
Sbjct: 71 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 129
Query: 101 EKYAKPEDIGGAT 113
A+P D GA
Sbjct: 130 SMLAEPNDESGAN 142
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 28 GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK-IYHPNVDELSGSVCL 86
++ + V++ G + + Y V+KI++ PD YP K P + F+ K H +V +G +CL
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICL 106
Query: 87 DVINQTWSPMFEF 99
V+ ++P
Sbjct: 107 SVLGDDYNPSLSI 119
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK-IYHPNVDELSGSVC 85
+ ++ + V++ G + + Y V+K+++ PD YP K P + F+ K H +V +G +C
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDIC 91
Query: 86 LDVINQTWSP 95
L ++ ++P
Sbjct: 92 LSLLGDDYNP 101
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 52 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 46 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 47 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP ++Y+ ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 57 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 2 SSPSKRREMDLMKLMMSDYK-----------VEMINDGMQEFYVEFNGPKESSYQGGVWK 50
S+ SKR + + DY E + + E++ GP+ + Y+GG +
Sbjct: 5 STSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYH 64
Query: 51 IRVELPDAYPYKSPSIGFVNKIYHPNVD-ELSGSVCLDVIN---QTWSP 95
++ P +P+K PSI + PN + + +CL + + TW+P
Sbjct: 65 GKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNP 109
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLD 87
GP S+++ ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 48 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLD 87
GP S+++ ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 47 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 34 VEFNGPKESSYQGGVWKIRVELPDAYPYKSP-----SIGFVNKIYHPNVDELSGSVCLDV 88
V GP ++ Y G ++ V P YP P + G + ++PN+ G VCL +
Sbjct: 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSI 172
Query: 89 INQTW 93
+N TW
Sbjct: 173 LN-TW 176
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 49 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|3NSW|A Chain A, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|B Chain B, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|C Chain C, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|D Chain D, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|E Chain E, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|F Chain F, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|G Chain G, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
Length = 106
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 16 MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFV 69
M+S+ + E IND YV G SY W++ ++P P + PS G +
Sbjct: 10 MLSEIRQEDINDVETVAYVTVTGKTARSYNLQYWRL-YDVPKTAPSQWPSFGTL 62
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 77 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 38 GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84
GP + Y+ ++ +++E YP P + FV KI V+ +G V
Sbjct: 67 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|3MXN|A Chain A, Crystal Structure Of The Rmi Core Complex
pdb|4DAY|A Chain A, Crystal Structure Of The Rmi Core Complex With Mm2
Peptide From Fancm
Length = 157
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 13 MKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72
+ ++M+ E+ ++ F V G SS GG+W I ++ D Y + FV++I
Sbjct: 26 LSVLMASKPKEVTTVKVKAFIVTLTGNLSSS--GGIWSITAKVSDGTAY--LDVDFVDEI 81
>pdb|1XX1|A Chain A, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|B Chain B, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|C Chain C, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|D Chain D, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|2F9R|A Chain A, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|B Chain B, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|C Chain C, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|D Chain D, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
Length = 285
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 53 VELPDAYPYKSPSIGFVNKIYHPNVDELSGS-VCLDV 88
L +A + + GF+NKIY+ +VD++S + LDV
Sbjct: 208 ARLKEAIKSRDSANGFINKIYYWSVDKVSTTKAALDV 244
>pdb|2GSR|A Chain A, Structure Of Porcine Class Pi Glutathione S-Transferase
pdb|2GSR|B Chain B, Structure Of Porcine Class Pi Glutathione S-Transferase
Length = 207
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 22 VEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPD 57
V+M+NDG+++ ++ ++Y+ G K ELP+
Sbjct: 87 VDMVNDGVEDLRCKYATLIYTNYEAGKEKYVKELPE 122
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 20 YKVEMINDGMQEFYVEF-----NGPKESSYQ-----GGVWKIRVELP--DAYPYKSPSIG 67
Y VE+IND + +++V+ + P S Q G+ I + D +P+ P +
Sbjct: 50 YSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVR 109
Query: 68 FVNKIYHPNVDELSGSVCLDVIN-QTWSPMFEF 99
V + G++C++++ Q WS +
Sbjct: 110 VVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,123,165
Number of Sequences: 62578
Number of extensions: 161876
Number of successful extensions: 479
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 120
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)