Query 032400
Match_columns 141
No_of_seqs 118 out of 1121
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 5.8E-39 1.3E-43 239.3 10.9 113 4-117 6-129 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.3E-38 5.1E-43 232.8 10.6 111 5-116 3-123 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 2.1E-36 4.6E-41 218.3 9.2 116 1-117 1-127 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 4.6E-35 9.9E-40 218.6 11.6 114 1-116 1-124 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.3E-34 5E-39 213.6 11.3 111 5-116 3-123 (147)
6 KOG0416 Ubiquitin-protein liga 100.0 1.2E-34 2.5E-39 216.9 8.7 130 1-130 1-173 (189)
7 KOG0418 Ubiquitin-protein liga 100.0 2.4E-33 5.2E-38 212.7 10.0 116 1-116 1-129 (200)
8 KOG0421 Ubiquitin-protein liga 100.0 1.4E-31 3E-36 196.0 8.6 109 4-113 30-148 (175)
9 KOG0425 Ubiquitin-protein liga 100.0 3.2E-31 7E-36 196.1 9.6 111 6-117 11-142 (171)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.8E-31 3.8E-36 195.3 8.0 109 7-116 1-121 (140)
11 KOG0426 Ubiquitin-protein liga 100.0 6.4E-31 1.4E-35 190.2 10.2 115 1-116 1-140 (165)
12 KOG0424 Ubiquitin-protein liga 100.0 7.8E-31 1.7E-35 191.7 10.3 115 1-116 1-133 (158)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1.4E-30 3E-35 191.0 10.1 110 6-116 2-122 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 3.4E-29 7.4E-34 184.3 10.1 111 6-117 1-123 (145)
15 KOG0427 Ubiquitin conjugating 99.9 1.8E-26 3.9E-31 166.9 9.4 96 4-101 16-115 (161)
16 KOG0422 Ubiquitin-protein liga 99.9 3.4E-26 7.3E-31 166.6 8.7 111 4-116 3-125 (153)
17 KOG0420 Ubiquitin-protein liga 99.9 1.2E-24 2.6E-29 163.3 6.3 112 3-116 28-151 (184)
18 KOG0423 Ubiquitin-protein liga 99.9 1.1E-24 2.3E-29 164.1 2.1 112 4-116 11-132 (223)
19 KOG0894 Ubiquitin-protein liga 99.9 5.7E-23 1.2E-27 159.2 9.3 93 4-101 6-106 (244)
20 KOG0428 Non-canonical ubiquiti 99.8 7.2E-19 1.6E-23 138.9 8.5 94 3-99 11-109 (314)
21 KOG0429 Ubiquitin-conjugating 99.6 1.4E-14 3E-19 113.1 8.6 103 7-110 23-138 (258)
22 KOG0895 Ubiquitin-conjugating 99.5 9.9E-15 2.1E-19 133.0 5.4 101 6-107 850-966 (1101)
23 KOG0895 Ubiquitin-conjugating 99.3 4.8E-12 1E-16 115.8 10.0 102 4-106 283-398 (1101)
24 KOG0896 Ubiquitin-conjugating 99.0 1.5E-09 3.3E-14 79.0 7.0 94 4-97 6-108 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.2 7E-06 1.5E-10 59.7 6.8 65 45-110 34-104 (133)
26 KOG0897 Predicted ubiquitin-co 98.0 3.4E-06 7.4E-11 60.1 2.7 53 49-101 13-66 (122)
27 PF05743 UEV: UEV domain; Int 97.5 0.00027 5.8E-09 50.9 5.1 68 26-95 25-99 (121)
28 KOG2391 Vacuolar sorting prote 96.4 0.015 3.1E-07 48.8 7.3 61 35-97 54-121 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.3 0.0017 3.6E-08 48.3 1.1 79 5-89 26-117 (161)
30 PF05773 RWD: RWD domain; Int 96.0 0.023 4.9E-07 38.8 5.4 48 25-72 25-74 (113)
31 smart00591 RWD domain in RING 93.7 0.59 1.3E-05 31.4 7.6 26 46-71 40-65 (107)
32 PF14462 Prok-E2_E: Prokaryoti 93.4 0.41 8.9E-06 34.7 6.5 61 11-72 5-67 (122)
33 KOG3357 Uncharacterized conser 90.7 0.26 5.6E-06 36.3 2.8 80 5-88 29-119 (167)
34 KOG0309 Conserved WD40 repeat- 81.4 7.6 0.00016 36.4 7.6 64 6-70 423-490 (1081)
35 PF14457 Prok-E2_A: Prokaryoti 79.4 1.6 3.5E-05 32.9 2.4 47 50-97 56-111 (162)
36 KOG4018 Uncharacterized conser 74.4 9.8 0.00021 30.1 5.5 21 48-68 50-70 (215)
37 PF06113 BRE: Brain and reprod 70.0 6.8 0.00015 33.0 3.9 28 46-74 305-332 (333)
38 PF09765 WD-3: WD-repeat regio 62.5 20 0.00044 29.5 5.3 58 6-70 102-160 (291)
39 PF03366 YEATS: YEATS family; 49.8 54 0.0012 21.9 4.9 40 30-71 2-41 (84)
40 cd00421 intradiol_dioxygenase 49.6 28 0.0006 25.4 3.8 25 46-70 65-90 (146)
41 cd03457 intradiol_dioxygenase_ 43.5 37 0.00081 26.1 3.8 25 46-70 86-110 (188)
42 PF14460 Prok-E2_D: Prokaryoti 41.3 13 0.00029 28.0 1.0 19 70-89 90-111 (175)
43 cd03459 3,4-PCD Protocatechuat 37.3 55 0.0012 24.4 3.8 24 47-70 73-101 (158)
44 PF00845 Gemini_BL1: Geminivir 35.8 78 0.0017 25.8 4.6 47 28-74 101-155 (276)
45 COG3866 PelB Pectate lyase [Ca 31.4 80 0.0017 26.7 4.1 41 31-71 198-241 (345)
46 PF06113 BRE: Brain and reprod 30.3 78 0.0017 26.7 3.9 48 43-97 61-109 (333)
47 KOG4445 Uncharacterized conser 29.5 69 0.0015 27.0 3.4 25 47-71 45-69 (368)
48 TIGR03737 PRTRC_B PRTRC system 28.1 32 0.0007 27.4 1.2 19 70-89 131-152 (228)
49 TIGR02423 protocat_alph protoc 28.1 88 0.0019 24.2 3.6 23 47-69 97-124 (193)
50 cd03463 3,4-PCD_alpha Protocat 24.4 1.2E+02 0.0025 23.3 3.7 23 47-69 93-120 (185)
51 KOG3696 Aspartyl beta-hydroxyl 24.3 55 0.0012 27.5 2.0 22 57-78 303-324 (334)
52 KOG3203 Mitochondrial/chloropl 24.3 41 0.00088 25.5 1.1 15 70-86 49-63 (165)
53 KOG1047 Bifunctional leukotrie 23.6 78 0.0017 28.8 2.9 30 42-72 248-280 (613)
54 PF09966 DUF2200: Uncharacteri 23.3 32 0.00069 24.5 0.3 19 71-89 61-79 (111)
55 smart00340 HALZ homeobox assoc 22.1 65 0.0014 19.1 1.4 12 4-15 20-31 (44)
56 PF04881 Adeno_GP19K: Adenovir 20.6 1.3E+02 0.0028 22.2 3.0 31 25-55 43-74 (139)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=239.29 Aligned_cols=113 Identities=33% Similarity=0.707 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+||++|++++ +++++++.+..+ |+++|+++|.||.+|||+||+|++.|.||.+||++||+|+|.|+||||||+
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~- 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD- 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-
Confidence 799999999987 567999999988 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
.+|.|||++|+++|+|++ .++.+|.+|...++++.|++
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa 129 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAA 129 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHH
Confidence 899999999999999999 66679999999999998874
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-38 Score=232.79 Aligned_cols=111 Identities=32% Similarity=0.703 Sum_probs=102.5
Q ss_pred HHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCC
Q 032400 5 SKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (141)
Q Consensus 5 ~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~ 81 (141)
.+||.||++++ +++||.+.+.++|+++|+++|.||.+|||+||+|++.|.||.+||++||+|+|+|+||||||+ .+
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~ 81 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SN 81 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-cc
Confidence 47999999866 788999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 82 GSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 82 G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|.||+|+|+++|+|++ .+++++.+|.+-++-.-+.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~i 123 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDI 123 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHH
Confidence 9999999999999999 6677999998877655444
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=218.30 Aligned_cols=116 Identities=29% Similarity=0.659 Sum_probs=108.5
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
|++ +.|||++|++++ ++.||+..+.++|+..|.++|.||.+|||+||+|++.|.|+.+||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 788 577889999987 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
|| .+|.|||++|+..|+|+| .+..+|.+|...++++.++.
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA 127 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAA 127 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHH
Confidence 99 799999999999999999 55668999999999998874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.6e-35 Score=218.56 Aligned_cols=114 Identities=33% Similarity=0.638 Sum_probs=104.5
Q ss_pred CCcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
|+ +.|||++|++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 44 589999999987 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 78 DELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 78 ~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+ .+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 80 ~-~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~a 124 (152)
T PTZ00390 80 D-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSV 124 (152)
T ss_pred C-CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 9 699999999999999999 5556888898888776665
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.3e-34 Score=213.64 Aligned_cols=111 Identities=30% Similarity=0.638 Sum_probs=102.3
Q ss_pred HHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCC
Q 032400 5 SKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (141)
Q Consensus 5 ~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~ 81 (141)
.+||++|++++ +++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CC
Confidence 48999999977 577899999999999999999999999999999999999999999999999999999999999 69
Q ss_pred CeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 82 GSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 82 G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~a 123 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEI 123 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 9999999999999999 5566888888887776665
No 6
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=216.94 Aligned_cols=130 Identities=63% Similarity=1.133 Sum_probs=116.8
Q ss_pred CCcHHHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
|+...|||..|+++|...++.|...++++.+++|.+.||.+|||+||+|+++|.+|++||++.|+|.|.++||||||++.
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCCchHH-------------------------------------------HHHHHhCCcCcCCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------------------------------------------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------------------------------------------~~~~~~~~pe~~~~~~~~~~ 117 (141)
+|.|||+.+++.|+|.| ++++.||+|++......+.+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~~~~~~~ 160 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKEEDLGLE 160 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcccccccc
Confidence 99999999999999999 88999999998766444444
Q ss_pred CCCcccccccccC
Q 032400 118 SDDEELSEDEYAS 130 (141)
Q Consensus 118 ~~~~~~~~~~~~~ 130 (141)
+.++++|++++.|
T Consensus 161 ~~d~d~s~~~~~s 173 (189)
T KOG0416|consen 161 DSDDDSSSESSGS 173 (189)
T ss_pred ccccccccccccc
Confidence 4445555544443
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=212.71 Aligned_cols=116 Identities=29% Similarity=0.683 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHHHHc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 032400 1 MSSPSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l------~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~H 74 (141)
|+.+.+||++|+++. ...||.+.+.++++.+.++.|.||++|||+||+|.+.|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 788999999999865 26699999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 75 PNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 75 PnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|||...+|.||||+|+++|++++ .+..++++||+.+++....
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavv 129 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVV 129 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHH
Confidence 99988999999999999999999 5666899999988876543
No 8
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=195.97 Aligned_cols=109 Identities=31% Similarity=0.697 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcC---CCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKLM---MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l~---~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
..|||++||+.++ .+||++.|.++|+++|..+|.||++|+|+|..|++.+.||.+||++||+|+|+|+.|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 4799999999984 67999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEeccCCCCCCchHHHHH-------HHhCCcCcCCCCC
Q 032400 81 SGSVCLDVINQTWSPMFEFC-------EKYAKPEDIGGAT 113 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~~~~-------~~~~~pe~~~~~~ 113 (141)
.|.|||+||++.|+..|.+- +++-.|.-.++-+
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLN 148 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLN 148 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcch
Confidence 99999999999999999444 4555554444333
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-31 Score=196.13 Aligned_cols=111 Identities=26% Similarity=0.630 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCCeE
Q 032400 6 KRREMDLMKLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84 (141)
Q Consensus 6 kRl~kEl~~l~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G~i 84 (141)
+|-.++|.+.+..|+.+.+.++ |++.|.|.|+||++|+|+||+|+..+.||.+||.+||+++|.|.+|||||| .+|.+
T Consensus 11 ~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy-~~G~v 89 (171)
T KOG0425|consen 11 LKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY-EDGDV 89 (171)
T ss_pred HHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-CCCCE
Confidence 3444556566888999988766 999999999999999999999999999999999999999999999999999 79999
Q ss_pred eccCCC-------------CCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 85 CLDVIN-------------QTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 85 Cl~~L~-------------~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
|++||. +.|+|.+ .++++|..|...++|+.|+.
T Consensus 90 CISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa 142 (171)
T KOG0425|consen 90 CISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAA 142 (171)
T ss_pred EEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHH
Confidence 999995 3699998 78889999999999999984
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1.8e-31 Score=195.35 Aligned_cols=109 Identities=32% Similarity=0.721 Sum_probs=92.0
Q ss_pred HHHHHHHHc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCC
Q 032400 7 RREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (141)
Q Consensus 7 Rl~kEl~~l---~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G 82 (141)
||++|++++ ++.|+.+.+..+ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 888888866 788999999987 999999999999999999999999999999999999999999999999999 899
Q ss_pred eEeccCCCC-CCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 83 SVCLDVINQ-TWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 83 ~iCl~~L~~-~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.||+++|.. .|+|++ .+..++.+|+...+.+.++
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a 121 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEA 121 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHH
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHH
Confidence 999999985 599998 4555777776666655554
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-31 Score=190.21 Aligned_cols=115 Identities=28% Similarity=0.604 Sum_probs=103.9
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEec-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccC
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~-~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HP 75 (141)
|+. ++|||++|++++ ++.||.+.+. ++|.+.|.|.|.||++|+|+||.|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 444 799999999987 6889998876 56899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCCC-------------CCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 76 NVDELSGSVCLDVIN-------------QTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 76 nI~~~~G~iCl~~L~-------------~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||+ .+|+||++||. +.|+|.+ .+++.++.|...+.++-++
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA 140 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDA 140 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHH
Confidence 999 79999999994 4799999 6777899998888877665
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-31 Score=191.71 Aligned_cols=115 Identities=27% Similarity=0.547 Sum_probs=102.1
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMIND-----GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~-----d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
||+ +..||+.|-++. .+-|+.+.+... |+..|.|.|.|+.+|+|+||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 555 577888777654 677999887643 79999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEeccCCCCC--CchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 72 IYHPNVDELSGSVCLDVINQT--WSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 72 i~HPnI~~~~G~iCl~~L~~~--WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|||||| .+|.|||++|.++ |+|+. .|..+|.+|+..++|++|+
T Consensus 81 l~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA 133 (158)
T KOG0424|consen 81 LFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEA 133 (158)
T ss_pred CcCCCcC-CCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHH
Confidence 9999999 6999999999754 99999 5566899999999999887
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=1.4e-30 Score=190.97 Aligned_cols=110 Identities=34% Similarity=0.748 Sum_probs=99.1
Q ss_pred HHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCC
Q 032400 6 KRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (141)
Q Consensus 6 kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G 82 (141)
|||++|++++ +..|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 6888888865 567999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred eEeccCCCCC-CchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 83 SVCLDVINQT-WSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 83 ~iCl~~L~~~-WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.||+++|... |+|++ .+..++.+|+...+.+.++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~a 122 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEA 122 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHH
Confidence 9999999876 99999 4555777888877766655
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=3.4e-29 Score=184.34 Aligned_cols=111 Identities=32% Similarity=0.682 Sum_probs=98.1
Q ss_pred HHHHHHHHHc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCC
Q 032400 6 KRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (141)
Q Consensus 6 kRl~kEl~~l---~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~ 81 (141)
+||++|++.+ .+.|+.+.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.+++|||||+ .+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CC
Confidence 5888888865 567898888776 999999999999999999999999999999999999999999999999999 69
Q ss_pred CeEeccCCC-CCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 82 GSVCLDVIN-QTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 82 G~iCl~~L~-~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
|.||+++|. ++|+|++ .+..++.+|+...+.+.++.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa 123 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAA 123 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 999999998 8999999 44557778877777766653
No 15
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-26 Score=166.87 Aligned_cols=96 Identities=27% Similarity=0.661 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc-ccCcccC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i-~HPnI~~ 79 (141)
+.+||+|||.++ ++.|+... ..+|+.+|.+.+.|.+||.|+|.+|.+.+.||+.||+..|+|.|..++ .|||||
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 688999999976 67899877 678999999999999999999999999999999999999999999987 899999
Q ss_pred CCCeEeccCCCCCCchHHHHHH
Q 032400 80 LSGSVCLDVINQTWSPMFEFCE 101 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~~~~~ 101 (141)
++|.|||++|.++|+|++.+.+
T Consensus 94 SNGHICL~iL~d~WsPAmsv~S 115 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQS 115 (161)
T ss_pred cCCeEEEEeecccCCcchhhHH
Confidence 8999999999999999994444
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.4e-26 Score=166.63 Aligned_cols=111 Identities=29% Similarity=0.593 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCCCcE----EEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 4 PSKRREMDLMKLMMSDYK----VEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l~~~~i~----v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+||.|||..+...+.. +...+.|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD- 80 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD- 80 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC-
Confidence 579999999988443332 4566789999999999 8999999999999999999999999999999999999999
Q ss_pred CCCeEeccCC-CCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVI-NQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L-~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
..|.||+.++ .++|+|++ .++.+..+|+...+=..|.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dl 125 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDL 125 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhH
Confidence 5799999999 58999999 4555777888776655444
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-24 Score=163.29 Aligned_cols=112 Identities=29% Similarity=0.682 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHc-CCCCcEEEec--CCCce--eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 3 SPSKRREMDLMKL-MMSDYKVEMI--NDGMQ--EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 3 ~~~kRl~kEl~~l-~~~~i~v~~~--~~d~~--~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
.+.-||++|+..+ .+++++.... .+++. .+.++|. |..+.|+||.|+|.+.+|+.||++||+|+|+|.||||||
T Consensus 28 ~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNI 106 (184)
T KOG0420|consen 28 AALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNI 106 (184)
T ss_pred HHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCc
Confidence 3577899999887 4556654322 33444 5999999 999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 78 DELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 78 ~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+ .+|.|||+||+++|+|+. -...+|..|...++=+-|+
T Consensus 107 d-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eA 151 (184)
T KOG0420|consen 107 D-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEA 151 (184)
T ss_pred C-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHH
Confidence 9 799999999999999998 3344777887777666666
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-24 Score=164.12 Aligned_cols=112 Identities=23% Similarity=0.527 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
..|.+.+|+..+ ++.||.|.+.++|+....+.|.||.||||++|.|++.+.+.++||.+||+-.|+|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 367788999877 788999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|.||.+.|+.+|+|.. ++-.++..|.+.++-+|++
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeA 132 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEA 132 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHH
Confidence 99999999999999998 2223444444444445554
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.7e-23 Score=159.20 Aligned_cols=93 Identities=22% Similarity=0.537 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc--cccCccc
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPNVD 78 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~--i~HPnI~ 78 (141)
+.|||+||++.+ +.+.|.+.+..+|++.||.+|.||++|||+||.|+..|.||++||++||.|++.|| .|-+|-
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktnt- 84 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNT- 84 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecCc-
Confidence 689999999977 77899999999999999999999999999999999999999999999999999995 344443
Q ss_pred CCCCeEeccCCC---CCCchHHHHHH
Q 032400 79 ELSGSVCLDVIN---QTWSPMFEFCE 101 (141)
Q Consensus 79 ~~~G~iCl~~L~---~~WsP~~~~~~ 101 (141)
++||++-. +.|+|.|.+-.
T Consensus 85 ----RLCLSiSDfHPdsWNP~WsVSt 106 (244)
T KOG0894|consen 85 ----RLCLSISDFHPDSWNPGWSVST 106 (244)
T ss_pred ----eEEEeccccCcCcCCCcccHHH
Confidence 79999974 78999994433
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.2e-19 Score=138.94 Aligned_cols=94 Identities=26% Similarity=0.571 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHcCC--CCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 3 SPSKRREMDLMKLMM--SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 3 ~~~kRl~kEl~~l~~--~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
.+.|||+||.+++.. ..+...+.++|+++|+++|.||.+|=|+||+|+.+|.||.+||++||.+..+|+--..- .
T Consensus 11 paVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~ 87 (314)
T KOG0428|consen 11 PAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---V 87 (314)
T ss_pred HHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---e
Confidence 368999999998854 36778999999999999999999999999999999999999999999999999432222 3
Q ss_pred CCeEeccCCC---CCCchHHHH
Q 032400 81 SGSVCLDVIN---QTWSPMFEF 99 (141)
Q Consensus 81 ~G~iCl~~L~---~~WsP~~~~ 99 (141)
+-+|||+|-. +.|.|+|.+
T Consensus 88 nkKiCLSISgyHPEtWqPSWSi 109 (314)
T KOG0428|consen 88 NKKICLSISGYHPETWQPSWSI 109 (314)
T ss_pred CceEEEEecCCCccccCcchhH
Confidence 4589999985 789999944
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=113.08 Aligned_cols=103 Identities=16% Similarity=0.263 Sum_probs=86.1
Q ss_pred HHHHHHHH---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCC--CCeEEEecccccCcccCCC
Q 032400 7 RREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYK--SPSIGFVNKIYHPNVDELS 81 (141)
Q Consensus 7 Rl~kEl~~---l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~--pP~V~F~t~i~HPnI~~~~ 81 (141)
.|+.|+.. .+..||+|.|...|-+.|.++|+ ...++|.||+|+|+|.+|++||.. -|+|.|.+.+|||+|++.+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 35555542 37889999999999999999999 466789999999999999999944 6999999999999999999
Q ss_pred CeEeccCCCCCCchHH-------HH-HHHhCCcCcCC
Q 032400 82 GSVCLDVINQTWSPMF-------EF-CEKYAKPEDIG 110 (141)
Q Consensus 82 G~iCl~~L~~~WsP~~-------~~-~~~~~~pe~~~ 110 (141)
+.+|++--...|+..- .+ ..+|.+|+...
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si 138 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSI 138 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccch
Confidence 9999988766687765 23 33888887644
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.9e-15 Score=133.04 Aligned_cols=101 Identities=21% Similarity=0.418 Sum_probs=86.0
Q ss_pred HHHHHHHHHc-------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc--cccCc
Q 032400 6 KRREMDLMKL-------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPN 76 (141)
Q Consensus 6 kRl~kEl~~l-------~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~--i~HPn 76 (141)
+|++++..++ .+.+|.|...++.+-..++.|.|+.+|||+.|.|+|.|.||++||..||.|...+. .++||
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 850 AQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 3555555432 67899999999988888999999999999999999999999999999999999874 59999
Q ss_pred ccCCCCeEeccCCC-------CCCchHHHHHHHhCCcC
Q 032400 77 VDELSGSVCLDVIN-------QTWSPMFEFCEKYAKPE 107 (141)
Q Consensus 77 I~~~~G~iCl~~L~-------~~WsP~~~~~~~~~~pe 107 (141)
.| ..|+|||++|+ +.|+|+-.+++.|..-+
T Consensus 930 ly-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 930 LY-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQ 966 (1101)
T ss_pred cc-cccceehhhhccccCCCccccCcchhHHHHHHHhh
Confidence 99 69999999996 57999887777555443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.8e-12 Score=115.75 Aligned_cols=102 Identities=23% Similarity=0.444 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc---cccCcc
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNV 77 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~---i~HPnI 77 (141)
..+|+.+|++-+ .+.|+.+.+.+..+...++.|.||.+|||++|.|.|.|.||..||..||+|.++|. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 367899999855 67799999999999999999999999999999999999999999999999999986 699999
Q ss_pred cCCCCeEeccCCC-------CCCchH-HHHHHHhCCc
Q 032400 78 DELSGSVCLDVIN-------QTWSPM-FEFCEKYAKP 106 (141)
Q Consensus 78 ~~~~G~iCl~~L~-------~~WsP~-~~~~~~~~~p 106 (141)
| .+|+||+++|. +.|+|. ..+.+.|-+.
T Consensus 363 Y-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sI 398 (1101)
T KOG0895|consen 363 Y-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESI 398 (1101)
T ss_pred c-cCceEEeeeeeecccccccCCCccccchhhhhhhh
Confidence 9 59999999993 679998 3444433333
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.5e-09 Score=79.02 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHc----CCCCcEEEecCC-C--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 4 PSKRREMDLMKL----MMSDYKVEMIND-G--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 4 ~~kRl~kEl~~l----~~~~i~v~~~~~-d--~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
+.-||+.|+.+= -+..++..+..+ | +..|..+|.||+.|+|++-.|.+.|.+-++||..||+|+|.++|--+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 345777777642 222333333333 3 668999999999999999999999999999999999999999998888
Q ss_pred ccCCCCeEeccCC--CCCCchHH
Q 032400 77 VDELSGSVCLDVI--NQTWSPMF 97 (141)
Q Consensus 77 I~~~~G~iCl~~L--~~~WsP~~ 97 (141)
|+..+|.|.-..+ ..+|+-.|
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y 108 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSY 108 (138)
T ss_pred cccCCCccCccccchhhcccccc
Confidence 8877787766444 26788776
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.17 E-value=7e-06 Score=59.74 Aligned_cols=65 Identities=23% Similarity=0.579 Sum_probs=53.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEeccc---ccCcccCCCCeEec---cCCCCCCchHHHHHHHhCCcCcCC
Q 032400 45 QGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDELSGSVCL---DVINQTWSPMFEFCEKYAKPEDIG 110 (141)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~V~F~t~i---~HPnI~~~~G~iCl---~~L~~~WsP~~~~~~~~~~pe~~~ 110 (141)
.|+.+.+.|.||+.||..||.|....+. +-|||+ .+|.||+ ...-+.|.|.-.+...+..-...+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL 104 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAIRLL 104 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888654 689999 6999999 777789999986666554444444
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.4e-06 Score=60.09 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCCCCCCeEEEecccccCcccCCCCeEeccCCC-CCCchHHHHHH
Q 032400 49 WKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVIN-QTWSPMFEFCE 101 (141)
Q Consensus 49 f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G~iCl~~L~-~~WsP~~~~~~ 101 (141)
..+.+.|+.+||+.||.+|...++..-..-..+|+||+.+|. +.|+.+|++..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~ 66 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVER 66 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHH
Confidence 456788999999999999988876555544468999999994 78999995443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.45 E-value=0.00027 Score=50.89 Aligned_cols=68 Identities=31% Similarity=0.605 Sum_probs=42.5
Q ss_pred CCCceeEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEeccc-----ccCcccCCCCeEeccCCCCCCch
Q 032400 26 NDGMQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNKI-----YHPNVDELSGSVCLDVINQTWSP 95 (141)
Q Consensus 26 ~~d~~~w~v~i~Gp~~tpY~gg~f~--~~i~fp~~YP~~pP~V~F~t~i-----~HPnI~~~~G~iCl~~L~~~WsP 95 (141)
++...+--+.+.|----.|+|.+|. +.|-+|.+||..||.|...... -+.+|+ .+|+|.+..| ++|++
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~ 99 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNP 99 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--T
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCC
Confidence 4444444444555433458888885 5566899999999999776321 244999 7999999988 56988
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.015 Score=48.78 Aligned_cols=61 Identities=33% Similarity=0.564 Sum_probs=46.7
Q ss_pred EEeCCCCCCCCCcEEEEEEE--cCCCCCCCCCeEEEe-cc----cccCcccCCCCeEeccCCCCCCchHH
Q 032400 35 EFNGPKESSYQGGVWKIRVE--LPDAYPYKSPSIGFV-NK----IYHPNVDELSGSVCLDVINQTWSPMF 97 (141)
Q Consensus 35 ~i~Gp~~tpY~gg~f~~~i~--fp~~YP~~pP~V~F~-t~----i~HPnI~~~~G~iCl~~L~~~WsP~~ 97 (141)
.+.|---.+|.|.+|.+=|. +.+.||+.||.+... |. -.|-||+ .+|.|.|..| .+|.|..
T Consensus 54 ~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYL-h~W~~ps 121 (365)
T KOG2391|consen 54 QLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYL-HNWDPPS 121 (365)
T ss_pred hccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhh-ccCCCcc
Confidence 34454446789988876555 699999999998554 21 1499999 7999999999 5698876
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.29 E-value=0.0017 Score=48.25 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHHHHHc----------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCc--EEEEEEEcCCCCCCCCCeEEEeccc
Q 032400 5 SKRREMDLMKL----------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGG--VWKIRVELPDAYPYKSPSIGFVNKI 72 (141)
Q Consensus 5 ~kRl~kEl~~l----------~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg--~f~~~i~fp~~YP~~pP~V~F~t~i 72 (141)
.+||..|+..| ....+.++ ...+-..|...-.- .|.-- .|.+++.+|..||..||.|....--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 46888888865 12234444 22233444332220 12223 3456666799999999999776321
Q ss_pred -ccCcccCCCCeEeccCC
Q 032400 73 -YHPNVDELSGSVCLDVI 89 (141)
Q Consensus 73 -~HPnI~~~~G~iCl~~L 89 (141)
--.-.| -.|+|||+.-
T Consensus 101 GKTaKMY-RGGkIClt~H 117 (161)
T PF08694_consen 101 GKTAKMY-RGGKICLTDH 117 (161)
T ss_dssp TT-SSBC-CCCBB---TT
T ss_pred Cchhhhh-cCceEeeecc
Confidence 122345 4899999874
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.95 E-value=0.023 Score=38.80 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred cCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc
Q 032400 25 INDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (141)
Q Consensus 25 ~~~d~~~w~v~i~G--p~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i 72 (141)
...+...+.+.+.. ...+.-....+++.|.||++||..+|.|.+.+..
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 25 ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 34455566666632 2333344568999999999999999999887643
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.71 E-value=0.59 Score=31.44 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.4
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 46 GGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
.-.+.+.|.||.+||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 35688999999999999999988764
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.36 E-value=0.41 Score=34.65 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=47.6
Q ss_pred HHHHcCCCCcEEEecCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc
Q 032400 11 DLMKLMMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (141)
Q Consensus 11 El~~l~~~~i~v~~~~~d~~~w~v~i~G--p~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i 72 (141)
|..-|...|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..|-
T Consensus 5 D~~~L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~ 67 (122)
T PF14462_consen 5 DEEYLDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP 67 (122)
T ss_pred HHHHHHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc
Confidence 334455668888877777777766 665 4777799999999999999999999988777643
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=0.26 Score=36.28 Aligned_cols=80 Identities=15% Similarity=0.315 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeEEEeccc-c
Q 032400 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNKI-Y 73 (141)
Q Consensus 5 ~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~V~F~t~i-~ 73 (141)
.+||..|+..+.. +++-..++-..|.-.=..+.||-|-|. .|.+++.+|-.||..+|.|...--- -
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 4677777775521 112223334445444445677777663 3456666799999999998654211 1
Q ss_pred cCcccCCCCeEeccC
Q 032400 74 HPNVDELSGSVCLDV 88 (141)
Q Consensus 74 HPnI~~~~G~iCl~~ 88 (141)
---.| -.|+|||.-
T Consensus 106 takmy-rggkiclt~ 119 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTD 119 (167)
T ss_pred hhhhh-cCceEeecc
Confidence 12234 479999954
No 34
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.41 E-value=7.6 Score=36.37 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=39.1
Q ss_pred HHHHHHHHHc--CCCCcEEEecCCCceeEEEEEeCCCCCCCCC-cEEEEEEEcCCCCCCC-CCeEEEec
Q 032400 6 KRREMDLMKL--MMSDYKVEMINDGMQEFYVEFNGPKESSYQG-GVWKIRVELPDAYPYK-SPSIGFVN 70 (141)
Q Consensus 6 kRl~kEl~~l--~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~g-g~f~~~i~fp~~YP~~-pP~V~F~t 70 (141)
+-|..|+.-+ +-+.+.++-.+-.-....+.+.+|-..- .| ...++.|.||.+||.+ +|++.|..
T Consensus 423 QnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhHHhHHhHhhccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 3455566544 3334444433334455666777664333 22 3457889999999988 68888874
No 35
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=79.38 E-value=1.6 Score=32.91 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCCCCeEEEeccc---ccCcccCCC-----CeEeccCCC-CCCchHH
Q 032400 50 KIRVELPDAYPYKSPSIGFVNKI---YHPNVDELS-----GSVCLDVIN-QTWSPMF 97 (141)
Q Consensus 50 ~~~i~fp~~YP~~pP~V~F~t~i---~HPnI~~~~-----G~iCl~~L~-~~WsP~~ 97 (141)
.+.|.|+.+||..+|.|.+.... .+||+. .. ..+|+.--. ..|.++.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~ 111 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSW 111 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhcc
Confidence 46789999999999987777543 257776 34 689996642 3455544
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=74.43 E-value=9.8 Score=30.13 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEEEEcCCCCCCCCCeEEE
Q 032400 48 VWKIRVELPDAYPYKSPSIGF 68 (141)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~V~F 68 (141)
.+.+.+.++.+||..+|-|.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999943
No 37
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.04 E-value=6.8 Score=33.00 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=23.9
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 032400 46 GGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (141)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~V~F~t~i~H 74 (141)
+-+|-+.|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3458888899999999999999987 666
No 38
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=62.46 E-value=20 Score=29.49 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCC-CcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 032400 6 KRREMDLMKLMMS-DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (141)
Q Consensus 6 kRl~kEl~~l~~~-~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t 70 (141)
++|.+|+..+.-. .+.+. .++++...++++..-. -...++|.++.+||..+|.+..--
T Consensus 102 s~ll~EIe~IGW~kl~~i~-~d~~ls~i~l~~~D~~------R~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQ-FDDDLSTIKLKIFDSS------RQHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEE-E-CCCSEEEEEEETTC------EEEEEEEETTTTTTTSEEEECS-T
T ss_pred HHHHHHHHHhccccceEEe-cCCCccEEEEEEEcCC------ceEEEEEEECCCCCCCCceeeCCC
Confidence 4677777777333 33333 3567888888877322 467799999999999999754433
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=49.85 E-value=54 Score=21.86 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 30 ~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
.+|.|.+.|+.+.-...-+=++.+.|.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999987754444566788888888886 55555544
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=49.56 E-value=28 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.2
Q ss_pred CcEEEEEEEcCCCCC-CCCCeEEEec
Q 032400 46 GGVWKIRVELPDAYP-YKSPSIGFVN 70 (141)
Q Consensus 46 gg~f~~~i~fp~~YP-~~pP~V~F~t 70 (141)
.|.|.|.-.+|--|| .+||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 388999999999999 9999998873
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=43.54 E-value=37 Score=26.09 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEec
Q 032400 46 GGVWKIRVELPDAYPYKSPSIGFVN 70 (141)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~V~F~t 70 (141)
.|.|.|.-.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 3888999999999999999998874
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=41.27 E-value=13 Score=28.02 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=15.1
Q ss_pred ccccc---CcccCCCCeEeccCC
Q 032400 70 NKIYH---PNVDELSGSVCLDVI 89 (141)
Q Consensus 70 t~i~H---PnI~~~~G~iCl~~L 89 (141)
|++|| +||+ .+|.||+...
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCC
Confidence 55666 6999 6999999874
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=37.31 E-value=55 Score=24.42 Aligned_cols=24 Identities=33% Similarity=0.731 Sum_probs=21.5
Q ss_pred cEEEEEEEcCCCCC-----CCCCeEEEec
Q 032400 47 GVWKIRVELPDAYP-----YKSPSIGFVN 70 (141)
Q Consensus 47 g~f~~~i~fp~~YP-----~~pP~V~F~t 70 (141)
|.|.|.-.+|--|| .+||.|.|.-
T Consensus 73 G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 73 GRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 88999999999999 8999998874
No 44
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=35.81 E-value=78 Score=25.81 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=29.5
Q ss_pred CceeEEEEEeCCCCCCCCC---cEEEEEEEc-----CCCCCCCCCeEEEeccccc
Q 032400 28 GMQEFYVEFNGPKESSYQG---GVWKIRVEL-----PDAYPYKSPSIGFVNKIYH 74 (141)
Q Consensus 28 d~~~w~v~i~Gp~~tpY~g---g~f~~~i~f-----p~~YP~~pP~V~F~t~i~H 74 (141)
|..-|++....-......| ..|+..+.+ +.+-||++|+|+.+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 3444777666333333333 345555555 4789999999999986543
No 45
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=31.44 E-value=80 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCC-CCCCcEEEEEEEc--CCCCCCCCCeEEEecc
Q 032400 31 EFYVEFNGPKES-SYQGGVWKIRVEL--PDAYPYKSPSIGFVNK 71 (141)
Q Consensus 31 ~w~v~i~Gp~~t-pY~gg~f~~~i~f--p~~YP~~pP~V~F~t~ 71 (141)
+|+..|.|-.++ -|.+|.+++++.- -++-=.+.|+|||-.-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~v 241 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMV 241 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEE
Confidence 689999997666 7889999988763 2445566789999863
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.34 E-value=78 Score=26.74 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=35.9
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeEEEe-cccccCcccCCCCeEeccCCCCCCchHH
Q 032400 43 SYQGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDELSGSVCLDVINQTWSPMF 97 (141)
Q Consensus 43 pY~gg~f~~~i~fp~~YP~~pP~V~F~-t~i~HPnI~~~~G~iCl~~L~~~WsP~~ 97 (141)
||.|...+-.|.|...||..||-+.|. ..-|+|-.. . +..| .+|.+.-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~L-~~Wd~~d 109 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPSL-VNWDPSD 109 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cchh-hcCCCCC
Confidence 589999999999999999999999997 334888432 1 1222 5687654
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=29.51 E-value=69 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.7
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
-.+.+.+..+..||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577888999999999999999864
No 48
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=28.12 E-value=32 Score=27.44 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=14.6
Q ss_pred ccccc---CcccCCCCeEeccCC
Q 032400 70 NKIYH---PNVDELSGSVCLDVI 89 (141)
Q Consensus 70 t~i~H---PnI~~~~G~iCl~~L 89 (141)
|++|| +||+ .+|.||+.-.
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~ 152 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNA 152 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCC
Confidence 45666 5898 6999999765
No 49
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=28.06 E-value=88 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEEEEcCCCCCC-----CCCeEEEe
Q 032400 47 GVWKIRVELPDAYPY-----KSPSIGFV 69 (141)
Q Consensus 47 g~f~~~i~fp~~YP~-----~pP~V~F~ 69 (141)
|.|.|+-.+|--||. +||.|.|.
T Consensus 97 G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 97 GEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999998 88888776
No 50
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.39 E-value=1.2e+02 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.8
Q ss_pred cEEEEEEEcCCCCCC-----CCCeEEEe
Q 032400 47 GVWKIRVELPDAYPY-----KSPSIGFV 69 (141)
Q Consensus 47 g~f~~~i~fp~~YP~-----~pP~V~F~ 69 (141)
|.|.|.-.+|--||. +||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 88888776
No 51
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=55 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=18.0
Q ss_pred CCCCCCCCeEEEecccccCccc
Q 032400 57 DAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 57 ~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
++=+-..|+|.|.-.+|||||-
T Consensus 303 dgs~eds~rvV~~V~lwhpevq 324 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQ 324 (334)
T ss_pred CCCcccCceEEEEEeccCcccc
Confidence 4445557999999999999995
No 52
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=41 Score=25.49 Aligned_cols=15 Identities=40% Similarity=0.848 Sum_probs=11.9
Q ss_pred cccccCcccCCCCeEec
Q 032400 70 NKIYHPNVDELSGSVCL 86 (141)
Q Consensus 70 t~i~HPnI~~~~G~iCl 86 (141)
.|+|||+.| -|.+|+
T Consensus 49 KPiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD--CGDHVV 63 (165)
T ss_pred CCccCCccC--CCCEEE
Confidence 379999998 677765
No 53
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.62 E-value=78 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.708 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEEEcCCCCCCC---CCeEEEeccc
Q 032400 42 SSYQGGVWKIRVELPDAYPYK---SPSIGFVNKI 72 (141)
Q Consensus 42 tpY~gg~f~~~i~fp~~YP~~---pP~V~F~t~i 72 (141)
+||.=|.|-+ +.+|++||+. -|.++|.|+-
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 4677788886 4678999987 4999999863
No 54
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=23.27 E-value=32 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=11.2
Q ss_pred ccccCcccCCCCeEeccCC
Q 032400 71 KIYHPNVDELSGSVCLDVI 89 (141)
Q Consensus 71 ~i~HPnI~~~~G~iCl~~L 89 (141)
|-+|||-...+|.||---+
T Consensus 61 P~lNp~~~lItGvICGvrv 79 (111)
T PF09966_consen 61 PALNPNRSLITGVICGVRV 79 (111)
T ss_dssp S---GGGGG--SEETTEEG
T ss_pred cccCccHHHhcCcccceee
Confidence 5689999889999997544
No 55
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.12 E-value=65 Score=19.10 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHc
Q 032400 4 PSKRREMDLMKL 15 (141)
Q Consensus 4 ~~kRl~kEl~~l 15 (141)
..+||++|+.++
T Consensus 20 eNrRL~ke~~eL 31 (44)
T smart00340 20 ENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHH
Confidence 468999998876
No 56
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=20.61 E-value=1.3e+02 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=21.7
Q ss_pred cCCCceeEEEEEeCCCCCCCC-CcEEEEEEEc
Q 032400 25 INDGMQEFYVEFNGPKESSYQ-GGVWKIRVEL 55 (141)
Q Consensus 25 ~~~d~~~w~v~i~Gp~~tpY~-gg~f~~~i~f 55 (141)
...+...|.|++.|+.||++. ..+|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 345777889999999999874 4555544444
Done!