Query 032400
Match_columns 141
No_of_seqs 118 out of 1121
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.9E-37 3.4E-41 229.8 11.6 115 1-116 1-126 (169)
2 2fo3_A Ubiquitin-conjugating e 100.0 1.5E-36 5.1E-41 218.5 11.0 107 1-108 4-121 (125)
3 2aak_A UBC1, ubiquitin conjuga 100.0 3.4E-36 1.2E-40 222.8 11.7 115 1-116 1-126 (152)
4 2h2y_A Ubiquitin-conjugating e 100.0 1.1E-35 3.7E-40 217.0 12.8 107 1-108 18-135 (136)
5 1jat_A Ubiquitin-conjugating e 100.0 8.9E-36 3.1E-40 221.3 11.7 115 2-117 4-128 (155)
6 2c2v_B Ubiquitin-conjugating e 100.0 4.2E-36 1.4E-40 223.0 9.9 115 1-116 2-127 (154)
7 2e2c_A Ubiquitin conjugating e 100.0 1.3E-35 4.5E-40 220.7 12.0 113 4-117 10-132 (156)
8 4gpr_A Ubiquitin-conjugating e 100.0 9.1E-36 3.1E-40 220.5 10.7 113 3-116 4-126 (151)
9 2ucz_A UBC7, ubiquitin conjuga 100.0 9.3E-36 3.2E-40 223.1 10.8 115 1-116 1-140 (165)
10 2ayv_A Ubiquitin-conjugating e 100.0 1.3E-35 4.4E-40 223.1 11.5 113 3-116 21-143 (166)
11 2r0j_A Ubiquitin carrier prote 100.0 9.6E-36 3.3E-40 219.9 10.5 112 4-116 2-123 (149)
12 1zdn_A Ubiquitin-conjugating e 100.0 8.3E-36 2.8E-40 222.2 9.5 112 4-116 14-135 (158)
13 2bep_A Ubiquitin-conjugating e 100.0 1.5E-35 5.2E-40 220.9 10.7 116 1-116 5-134 (159)
14 1z2u_A Ubiquitin-conjugating e 100.0 1.9E-35 6.6E-40 218.4 10.8 112 4-116 5-126 (150)
15 2c4o_A Ubiquitin-conjugating e 100.0 1.9E-35 6.5E-40 221.9 10.6 112 4-116 20-141 (165)
16 3h8k_A Ubiquitin-conjugating e 100.0 2.8E-35 9.7E-40 220.2 11.3 114 2-116 2-139 (164)
17 1i7k_A Ubiquitin-conjugating e 100.0 2.1E-35 7.2E-40 224.5 10.7 113 4-117 31-153 (179)
18 3k9o_A Ubiquitin-conjugating e 100.0 2.2E-35 7.5E-40 227.5 10.6 116 1-116 2-131 (201)
19 2a7l_A Hypothetical ubiquitin- 100.0 1.6E-35 5.5E-40 216.3 9.1 102 1-103 20-128 (136)
20 1yrv_A Ubiquitin-conjugating l 100.0 1.6E-35 5.5E-40 223.2 9.3 116 1-117 20-149 (169)
21 1yh2_A HSPC150 protein similar 100.0 3.3E-35 1.1E-39 221.2 10.8 114 3-117 4-131 (169)
22 3rz3_A Ubiquitin-conjugating e 100.0 4.4E-35 1.5E-39 223.1 11.3 115 2-117 6-144 (183)
23 1fxt_A Ubiquitin-conjugating e 100.0 1.7E-35 6E-40 218.4 8.5 113 4-116 2-125 (149)
24 3bzh_A Ubiquitin-conjugating e 100.0 2.8E-35 9.6E-40 226.3 10.0 114 2-116 47-170 (194)
25 2awf_A Ubiquitin-conjugating e 100.0 1E-34 3.5E-39 219.2 12.4 115 3-118 17-155 (172)
26 2gjd_A Ubiquitin-conjugating e 100.0 6.8E-35 2.3E-39 217.1 10.7 115 1-116 1-133 (157)
27 1y8x_A Ubiquitin-conjugating e 100.0 6.7E-35 2.3E-39 217.9 10.6 114 1-116 4-126 (160)
28 2pwq_A Ubiquitin conjugating e 100.0 3E-35 1E-39 229.4 8.6 114 3-116 23-146 (216)
29 3rcz_B SUMO-conjugating enzyme 100.0 1.2E-34 4.2E-39 217.2 11.0 113 3-116 10-139 (163)
30 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.1E-34 3.7E-39 222.9 10.8 113 4-116 33-168 (193)
31 2onu_A Ubiquitin-conjugating e 100.0 4.9E-36 1.7E-40 222.4 3.1 114 3-116 2-123 (152)
32 2grr_A Ubiquitin-conjugating e 100.0 2.1E-34 7.3E-39 215.2 10.1 115 1-116 4-136 (161)
33 2nvu_C NEDD8-conjugating enzym 100.0 3E-34 1E-38 218.2 10.2 113 2-116 25-146 (180)
34 3e46_A Ubiquitin-conjugating e 100.0 3.4E-34 1.2E-38 228.0 10.8 116 1-116 54-183 (253)
35 2a4d_A Ubiquitin-conjugating e 100.0 1.4E-33 4.8E-38 211.1 12.3 114 4-117 26-156 (160)
36 1wzv_A Ubiquitin-conjugating e 100.0 4.7E-34 1.6E-38 212.0 9.6 111 4-116 5-127 (155)
37 2z5d_A Ubiquitin-conjugating e 100.0 7.3E-35 2.5E-39 221.6 5.1 112 4-116 26-145 (179)
38 1tte_A Ubiquitin-conjugating e 100.0 9.9E-35 3.4E-39 226.3 5.8 115 2-116 1-126 (215)
39 1jat_B Ubiquitin-conjugating e 100.0 9.2E-34 3.2E-38 207.0 10.2 116 1-117 2-135 (138)
40 2y9m_A Ubiquitin-conjugating e 100.0 1.5E-33 5E-38 212.8 10.3 116 1-116 3-143 (172)
41 2q0v_A Ubiquitin-conjugating e 100.0 7.1E-33 2.4E-37 206.4 12.1 114 2-117 20-150 (156)
42 3fn1_B NEDD8-conjugating enzym 100.0 3.1E-33 1.1E-37 209.8 10.0 113 2-116 13-143 (167)
43 1yf9_A Ubiquitin carrier prote 100.0 5.9E-34 2E-38 215.0 5.8 112 4-116 13-132 (171)
44 2hlw_A Ubiquitin-conjugating e 100.0 3.8E-33 1.3E-37 210.5 9.9 115 3-117 35-166 (170)
45 4ds2_A Ubiquitin-conjugating e 100.0 1.7E-33 6E-38 211.3 7.9 97 1-98 5-119 (167)
46 3o2u_A NEDD8-conjugating enzym 100.0 5.9E-33 2E-37 212.6 10.2 115 1-117 27-156 (190)
47 1c4z_D UBCH7, ubiquitin conjug 100.0 8.8E-33 3E-37 204.9 8.7 111 4-116 3-125 (154)
48 4ddg_A Ubiquitin-conjugating e 100.0 3.1E-32 1.1E-36 228.4 10.3 115 2-117 2-126 (399)
49 2f4w_A Ubiquitin-conjugating e 100.0 1.7E-30 5.7E-35 198.6 11.5 104 3-109 14-130 (187)
50 1zuo_A Hypothetical protein LO 100.0 2.1E-31 7.1E-36 203.5 6.3 104 4-108 28-158 (186)
51 3ceg_A Baculoviral IAP repeat- 100.0 1.3E-29 4.5E-34 207.4 12.4 112 4-116 77-217 (323)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.2E-26 4E-31 173.8 -1.7 95 5-103 34-143 (172)
53 3kpa_A Probable ubiquitin fold 99.7 2.2E-18 7.4E-23 127.0 0.9 86 5-97 36-132 (168)
54 3r3q_A Suppressor protein STP2 99.6 4E-16 1.4E-20 116.6 7.6 102 6-109 31-160 (162)
55 3obq_A Tumor susceptibility ge 99.3 2.4E-12 8.2E-17 94.6 4.9 62 27-95 51-120 (146)
56 2ebm_A RWD domain-containing p 96.3 0.016 5.5E-07 40.2 7.2 68 1-70 8-78 (128)
57 2yz0_A Serine/threonine-protei 94.3 0.25 8.5E-06 34.4 7.9 42 29-71 45-86 (138)
58 2day_A Ring finger protein 25; 93.5 0.26 9E-06 33.8 6.7 66 6-71 11-83 (128)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 91.9 1.1 3.7E-05 30.9 8.2 24 47-70 63-86 (137)
60 2ebk_A RWD domain-containing p 91.4 0.33 1.1E-05 33.4 5.0 41 29-70 39-79 (128)
61 2daw_A RWD domain containing p 90.1 0.5 1.7E-05 33.9 5.2 24 48-71 76-99 (154)
62 2dax_A Protein C21ORF6; RWD do 88.2 0.37 1.3E-05 34.3 3.3 24 48-71 74-97 (152)
63 3zqs_A E3 ubiquitin-protein li 65.5 22 0.00075 26.4 6.8 59 7-72 5-63 (186)
64 3rls_A YAF9, protein AF-9 homo 37.7 86 0.0029 23.0 6.0 43 27-71 30-72 (175)
65 3qrl_A Transcription initiatio 33.5 1.3E+02 0.0043 21.3 6.1 43 29-73 32-77 (140)
66 3c9p_A Uncharacterized protein 28.6 18 0.00061 25.1 0.9 19 71-89 67-85 (123)
67 2bum_A Protocatechuate 3,4-dio 26.5 62 0.0021 24.2 3.7 25 46-70 110-139 (209)
68 3pft_A Flavin reductase; desul 20.1 51 0.0018 23.0 2.0 41 61-105 42-85 (157)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.9e-37 Score=229.78 Aligned_cols=115 Identities=24% Similarity=0.610 Sum_probs=103.9
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
||+ +.+||++|++++ ++.||.+.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 775 789999999976 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|+ .+|.|||++|.++|+|++ .+.+++.+|+..++.+.++
T Consensus 81 I~-~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~a 126 (169)
T 1ayz_A 81 VY-ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126 (169)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHH
T ss_pred CC-CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 99 699999999999999999 5556788888877765543
No 2
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-36 Score=218.48 Aligned_cols=107 Identities=21% Similarity=0.500 Sum_probs=91.5
Q ss_pred CCcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc-ccCc
Q 032400 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i-~HPn 76 (141)
|+++.+||++|++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 788899999999976 677999999999999999999999999999999999999999999999999999997 9999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCc
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPED 108 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~ 108 (141)
|+ .+|.||+++|.++|+|++ .+.+++.+|+.
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~ 121 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKE 121 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC----
T ss_pred CC-CCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccc
Confidence 99 699999999999999999 44556666654
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3.4e-36 Score=222.82 Aligned_cols=115 Identities=27% Similarity=0.620 Sum_probs=105.9
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
||+ +.+||++|++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 775 789999999976 6779999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|+ .+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 81 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 126 (152)
T 2aak_A 81 IY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126 (152)
T ss_dssp BC-TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHH
T ss_pred CC-CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHH
Confidence 99 699999999999999999 5556888998888777766
No 4
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.1e-35 Score=216.96 Aligned_cols=107 Identities=21% Similarity=0.501 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc-ccCc
Q 032400 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i-~HPn 76 (141)
|+.+.+||++|++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 566889999999976 677999999999999999999999999999999999999999999999999999997 9999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCc
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPED 108 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~ 108 (141)
|+ .+|.||+++|.++|+|++ .+..++.+|+.
T Consensus 98 v~-~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 98 VY-SNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CC-CCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99 699999999999999999 44456666653
No 5
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=8.9e-36 Score=221.34 Aligned_cols=115 Identities=33% Similarity=0.665 Sum_probs=105.4
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCccc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
+.+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 44679999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 79 ELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 79 ~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
.+|.||+++|.++|+|++ .+..++.+|+..++.+.++.
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa 128 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 128 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTH
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 899999999999999999 55568889988888777763
No 6
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-36 Score=222.99 Aligned_cols=115 Identities=30% Similarity=0.611 Sum_probs=103.3
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
||. +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 344 579999999976 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 77 VDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 77 I~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|+ .+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~a 127 (154)
T 2c2v_B 82 VD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127 (154)
T ss_dssp BC-TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHH
T ss_pred Cc-cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 99 689999999999999999 5556888888888777665
No 7
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-35 Score=220.66 Aligned_cols=113 Identities=27% Similarity=0.600 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD-Q 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc-c
Confidence 789999999976 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
+|.||+++|.++|+|++ .+..++.+|+..++.+.++.
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa 132 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 132 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHH
T ss_pred CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 99999999999999999 55568889988888877764
No 8
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=9.1e-36 Score=220.46 Aligned_cols=113 Identities=27% Similarity=0.655 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
.+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~- 82 (151)
T 4gpr_A 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN- 82 (151)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC-
Confidence 3689999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 126 (151)
T 4gpr_A 83 KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEV 126 (151)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHH
T ss_pred CCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHH
Confidence 699999999999999999 5566888998888777666
No 9
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.3e-36 Score=223.13 Aligned_cols=115 Identities=26% Similarity=0.542 Sum_probs=103.3
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccC
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~-~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HP 75 (141)
|++ +.+||++|++++ ++.||++.+.+ +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 775 789999999976 67899999875 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCC-------------CCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 76 NVDELSGSVCLDVI-------------NQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 76 nI~~~~G~iCl~~L-------------~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||+ .+|.||+++| .++|+|++ .+..++.+|+..++.+.++
T Consensus 81 Nv~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~a 140 (165)
T 2ucz_A 81 NIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDA 140 (165)
T ss_dssp TBC-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHH
T ss_pred CCC-CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHH
Confidence 999 6999999999 68899999 4556788888888777766
No 10
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-35 Score=223.09 Aligned_cols=113 Identities=30% Similarity=0.668 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
.+.+||++|++++ ++.||.+.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+
T Consensus 21 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~- 99 (166)
T 2ayv_A 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN- 99 (166)
T ss_dssp THHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-
Confidence 3689999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|.++|+|++ .+.+++.+|+..++.+.++
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~a 143 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 143 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHH
Confidence 799999999999999999 5556888888877766665
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=9.6e-36 Score=219.89 Aligned_cols=112 Identities=29% Similarity=0.628 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID-K 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCC-C
Confidence 358999999976 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|.||+++|.++|+|++ .+.+++.+|+..++.+.++
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 123 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHH
T ss_pred CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHH
Confidence 89999999999999999 5556888898887777665
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.3e-36 Score=222.24 Aligned_cols=112 Identities=23% Similarity=0.491 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.||.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-A 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC-C
Confidence 578999999976 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~a 135 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHH
T ss_pred CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 89999999999999999 5556888888877777665
No 13
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.5e-35 Score=220.90 Aligned_cols=116 Identities=24% Similarity=0.670 Sum_probs=104.6
Q ss_pred CCc-HHHHHHHHHHHc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccc
Q 032400 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l------~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~ 73 (141)
|++ +.+||++|++++ .+.|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 554 789999999976 2679999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 74 HPNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||||+..+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 134 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 134 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 999995589999999999999999 5566888888877766655
No 14
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.9e-35 Score=218.37 Aligned_cols=112 Identities=32% Similarity=0.705 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC-C
Confidence 679999999976 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~a 126 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHH
Confidence 99999999999999999 4556788888777766655
No 15
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.9e-35 Score=221.94 Aligned_cols=112 Identities=32% Similarity=0.704 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~-~ 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC-C
Confidence 689999999976 677999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|.||+++|.++|+|++ .+.+++.+|+..++.+.++
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~a 141 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHH
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHH
Confidence 99999999999999999 5556888888877766665
No 16
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.8e-35 Score=220.18 Aligned_cols=114 Identities=25% Similarity=0.533 Sum_probs=103.8
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
+.+.+||++|++++ ++.||++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 35789999999976 678999998876 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCC-------------CCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 78 DELSGSVCLDVIN-------------QTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 78 ~~~~G~iCl~~L~-------------~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+ .+|.||+++|. ++|+|++ .+..++.+|+..++.+.++
T Consensus 82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~a 139 (164)
T 3h8k_A 82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDA 139 (164)
T ss_dssp C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHH
T ss_pred C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHH
Confidence 9 79999999997 7899999 5566888998888877666
No 17
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-35 Score=224.47 Aligned_cols=113 Identities=25% Similarity=0.518 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~ 80 (141)
+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~-~ 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-T 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc-c
Confidence 689999999976 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 81 SGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 81 ~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
+|.|||++|.++|+|++ .+..++.+|+..++.+.++.
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa 153 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 153 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHH
Confidence 99999999999999999 55568889988888877773
No 18
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.2e-35 Score=227.48 Aligned_cols=116 Identities=24% Similarity=0.682 Sum_probs=104.7
Q ss_pred CCc-HHHHHHHHHHHcC------CCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccc
Q 032400 1 MSS-PSKRREMDLMKLM------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l~------~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~ 73 (141)
||+ +.+||++|++++. +.||++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 665 7899999999872 569999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 74 HPNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||||+..+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~a 131 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 131 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHH
Confidence 999995599999999999999999 5666888999888877666
No 19
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-35 Score=216.30 Aligned_cols=102 Identities=24% Similarity=0.576 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHc---CCCCcEEE--ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccc--
Q 032400 1 MSSPSKRREMDLMKL---MMSDYKVE--MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY-- 73 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l---~~~~i~v~--~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~-- 73 (141)
|++..+||++|++++ +++|+.+. +.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 676679999999976 67788865 77889999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEeccCCCCCCchHHHHHHHh
Q 032400 74 HPNVDELSGSVCLDVINQTWSPMFEFCEKY 103 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L~~~WsP~~~~~~~~ 103 (141)
||||+ .+|.||+++|+++|+|++++.+++
T Consensus 100 HPNV~-~~G~ICL~iL~~~WsP~~ti~~vL 128 (136)
T 2a7l_A 100 HPHVY-SNGHICLSILTEDWSPALSVQSVC 128 (136)
T ss_dssp BTTBC-TTCBBCCGGGTTTCCTTSCHHHHH
T ss_pred CccCC-CCCeEEchhcCCCCCCCCcHHHHH
Confidence 99999 699999999999999999666654
No 20
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-35 Score=223.23 Aligned_cols=116 Identities=22% Similarity=0.461 Sum_probs=106.1
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
|++ +.+||++|++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+|||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 555 689999999976 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cCCCCeEeccCCC--CCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 77 V-DELSGSVCLDVIN--QTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 77 I-~~~~G~iCl~~L~--~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
| + .+|.||+++|. ++|+|++ .+..++.+|+..++.+.++.
T Consensus 100 I~~-~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa 149 (169)
T 1yrv_A 100 VDP-HTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149 (169)
T ss_dssp BCT-TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHH
T ss_pred ccC-CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHH
Confidence 9 6 79999999998 8999999 55668899998888877763
No 21
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-35 Score=221.22 Aligned_cols=114 Identities=28% Similarity=0.566 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
++.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~- 82 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID- 82 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-
Confidence 4789999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCC----CCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 80 LSGSVCLDVIN----QTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 80 ~~G~iCl~~L~----~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
.+|.||+++|+ ++|+|++ .+..++.+|+..++.+.++.
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa 131 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADIS 131 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHH
Confidence 79999999998 8999999 45568889988888777763
No 22
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.4e-35 Score=223.10 Aligned_cols=115 Identities=27% Similarity=0.620 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~-~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
+++.|||++|++++ ++.|+++. +.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 85 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85 (183)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCC
Confidence 34789999999976 67799998 667899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCC-------------CCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 78 DELSGSVCLDVIN-------------QTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 78 ~~~~G~iCl~~L~-------------~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
+ .+|.||+++|. ++|+|++ .+..++.+|+..++++.|+.
T Consensus 86 ~-~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa 144 (183)
T 3rz3_A 86 Y-ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144 (183)
T ss_dssp C-TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHH
T ss_pred C-CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 9 69999999996 7899999 56668999999998888774
No 23
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.7e-35 Score=218.39 Aligned_cols=113 Identities=27% Similarity=0.665 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~~~~-d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+||++|++++ ++.|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999976 677999999887 9999999999999999999999999999999999999999999999999994
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 125 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEV 125 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 499999999999999999 5556888888877777665
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=2.8e-35 Score=226.27 Aligned_cols=114 Identities=26% Similarity=0.578 Sum_probs=103.5
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCccc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
+.+.+||++|++++ ++.||.+.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 34689999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 79 ELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 79 ~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.|||++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 127 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~a 170 (194)
T 3bzh_A 127 -SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 170 (194)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred -CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHH
Confidence 699999999999999999 4556788888777766555
No 25
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1e-34 Score=219.23 Aligned_cols=115 Identities=27% Similarity=0.624 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCccc
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~-~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
.+.+||++|++++ ++.||++.+.+ +|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+
T Consensus 17 ~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~ 96 (172)
T 2awf_A 17 RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96 (172)
T ss_dssp TTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC
Confidence 4789999999976 77899999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCC-------------CCCchHH-------HHHHHhCCcCcCCCCCCCCCC
Q 032400 79 ELSGSVCLDVIN-------------QTWSPMF-------EFCEKYAKPEDIGGATEEKSS 118 (141)
Q Consensus 79 ~~~G~iCl~~L~-------------~~WsP~~-------~~~~~~~~pe~~~~~~~~~~~ 118 (141)
.+|.||+++|. ++|+|++ .+..++.+|+..++.+.++..
T Consensus 97 -~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~ 155 (172)
T 2awf_A 97 -KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAK 155 (172)
T ss_dssp -TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC------------
T ss_pred -CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHH
Confidence 68999999996 6899999 556688999999998888854
No 26
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=6.8e-35 Score=217.10 Aligned_cols=115 Identities=30% Similarity=0.550 Sum_probs=102.2
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~-----~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
||+ +.+||++|++++ ++.|+.+.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 775 789999999876 67899998875 389999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEeccCCCC--CCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 72 IYHPNVDELSGSVCLDVINQ--TWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 72 i~HPnI~~~~G~iCl~~L~~--~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||||||+ .+|.||+++|.. +|+|++ .+..++.+|+..++.+.++
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 133 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHH
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 9999999 799999999986 799999 5556888998888777665
No 27
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.7e-35 Score=217.91 Aligned_cols=114 Identities=24% Similarity=0.530 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHc-CCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCccc
Q 032400 1 MSSPSKRREMDLMKL-MMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l-~~~~i~v~-~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
|+.+.+||++|++++ ++.|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 566899999999998 56789988 6788999999988 99999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 79 ELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 79 ~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~a 126 (160)
T 1y8x_A 83 -LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEA 126 (160)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHH
T ss_pred -CCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 699999999999999999 5556788888888777666
No 28
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3e-35 Score=229.42 Aligned_cols=114 Identities=27% Similarity=0.633 Sum_probs=104.2
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
.+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.
T Consensus 23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~ 102 (216)
T 2pwq_A 23 KELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISS 102 (216)
T ss_dssp HHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcC
Confidence 3789999999976 6789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.|||++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 103 ~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~ea 146 (216)
T 2pwq_A 103 QTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146 (216)
T ss_dssp TTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred CCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 589999999999999999 5566888898888776655
No 29
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-34 Score=217.21 Aligned_cols=113 Identities=24% Similarity=0.517 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMIND-----GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~-----d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~H 74 (141)
.+.+||+||++++ ++.|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||
T Consensus 10 ~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~H 89 (163)
T 3rcz_B 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFH 89 (163)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCcc
Confidence 3789999999976 678999999876 99999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCeEeccCCCC--CCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 75 PNVDELSGSVCLDVINQ--TWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 75 PnI~~~~G~iCl~~L~~--~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|||+ .+|.||+++|.. +|+|++ .+..++.+|+..++.+.++
T Consensus 90 PnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~a 139 (163)
T 3rcz_B 90 PNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEA 139 (163)
T ss_dssp TTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHH
T ss_pred CCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 9999 799999999975 499999 5566889998888777665
No 30
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-34 Score=222.90 Aligned_cols=113 Identities=26% Similarity=0.611 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHc---CC-------------CCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEE
Q 032400 4 PSKRREMDLMKL---MM-------------SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~-------------~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~ 67 (141)
+.+||++|++++ ++ .||.+.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 678999999976 33 69999999999999999999999999999999999999999999999999
Q ss_pred EecccccCcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 68 FVNKIYHPNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 68 F~t~i~HPnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
|.|+||||||+..+|.|||++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~a 168 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEV 168 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 999999999995589999999999999999 5556888888877776655
No 31
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.9e-36 Score=222.41 Aligned_cols=114 Identities=47% Similarity=0.940 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCC
Q 032400 3 SPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (141)
Q Consensus 3 ~~~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G 82 (141)
++.+||++|++++...|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+..+|
T Consensus 2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G 81 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81 (152)
T ss_dssp -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence 56799999999997789999999999999999999999999999999999999999999999999999999999995589
Q ss_pred eEeccCCCCCCchHH-------H-HHHHhCCcCcCCCCCCCC
Q 032400 83 SVCLDVINQTWSPMF-------E-FCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 83 ~iCl~~L~~~WsP~~-------~-~~~~~~~pe~~~~~~~~~ 116 (141)
.||+++|.++|+|++ . +..++.+|+..++.+.++
T Consensus 82 ~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~a 123 (152)
T 2onu_A 82 SVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123 (152)
T ss_dssp BBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHH
T ss_pred eEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 999999999999998 2 236788888888777665
No 32
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.1e-34 Score=215.20 Aligned_cols=115 Identities=25% Similarity=0.473 Sum_probs=102.6
Q ss_pred CCc-HHHHHHHHHHHc---CCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~~~~i~v~~~~-----~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
|++ +.+||++|++++ ++.|+.+.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 664 689999999976 67899998764 589999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEeccCCCC--CCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 72 IYHPNVDELSGSVCLDVINQ--TWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 72 i~HPnI~~~~G~iCl~~L~~--~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||||||+ .+|.||+++|.. +|+|++ .+..++.+|+..++.+.++
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 136 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEA 136 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 9999999 799999999975 899999 4556788888887777665
No 33
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-34 Score=218.20 Aligned_cols=113 Identities=23% Similarity=0.504 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHHc-CCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 2 SSPSKRREMDLMKL-MMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 2 s~~~kRl~kEl~~l-~~~~i~v~-~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+.+||++|++++ +++|+++. +.++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 25 ~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~- 102 (180)
T 2nvu_C 25 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID- 102 (180)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC-
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC-
Confidence 44789999999998 56789988 7788999999998 99999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 103 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~a 146 (180)
T 2nvu_C 103 LEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEA 146 (180)
T ss_dssp TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHH
T ss_pred CCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 699999999999999999 4556788888888777666
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.4e-34 Score=228.01 Aligned_cols=116 Identities=24% Similarity=0.670 Sum_probs=105.4
Q ss_pred CCc-HHHHHHHHHHHc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccc
Q 032400 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l------~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~ 73 (141)
|++ +.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 444 689999999987 2579999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 74 HPNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
||||+..+|.||+++|.++|+|++ .+..++.+|+..++.+.++
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~ea 183 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVV 183 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHH
Confidence 999995589999999999999999 5566888999888877666
No 35
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.4e-33 Score=211.08 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHc---CCCC-cEEEe-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCc
Q 032400 4 PSKRREMDLMKL---MMSD-YKVEM-INDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~-i~v~~-~~~d--~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPn 76 (141)
+.+||++|++++ ++.| +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 688999999987 4456 67777 3454 899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC--CCCchHH-------HHHHHhC-CcCcCCCCCCCCC
Q 032400 77 VDELSGSVCLDVIN--QTWSPMF-------EFCEKYA-KPEDIGGATEEKS 117 (141)
Q Consensus 77 I~~~~G~iCl~~L~--~~WsP~~-------~~~~~~~-~pe~~~~~~~~~~ 117 (141)
|+..+|.||+++|. ++|+|++ .+..++. +|+..++++.|++
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 98568999999997 8999999 4444664 6888888877774
No 36
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=4.7e-34 Score=211.96 Aligned_cols=111 Identities=26% Similarity=0.487 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHc---CCCCcEE-EecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 4 PSKRREMDLMKL---MMSDYKV-EMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v-~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+||++|++++ ++.|+.+ .+.++|+++|+++|. |++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~- 82 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD- 82 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC-
Confidence 679999999976 6779998 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCeEeccCC-CCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVI-NQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L-~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++| .++|+|++ .+..++.+|+..++.+.++
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 127 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDL 127 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHH
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 6999999999 89999999 5556888888887777665
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=221.56 Aligned_cols=112 Identities=50% Similarity=1.000 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCCe
Q 032400 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (141)
Q Consensus 4 ~~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G~ 83 (141)
+.+||++|++++...|+++.+. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+..+|.
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999998789999887 578999999999999999999999999999999999999999999999999944999
Q ss_pred EeccCCCCCCchHH-------H-HHHHhCCcCcCCCCCCCC
Q 032400 84 VCLDVINQTWSPMF-------E-FCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 84 iCl~~L~~~WsP~~-------~-~~~~~~~pe~~~~~~~~~ 116 (141)
||+++|.++|+|++ . +..++.+|+..++.+.++
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~ea 145 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHH
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 99999999999999 3 555788888877777665
No 38
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=9.9e-35 Score=226.35 Aligned_cols=115 Identities=29% Similarity=0.666 Sum_probs=103.0
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEecCCC-ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMINDG-MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~~~d-~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
|++.+||++|++++ +++||++.+.++| +++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 1 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp CTTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 46789999999976 6789999988775 5699999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 78 DELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 78 ~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+..+|.||+++|.++|+|++ .+.+++.+|+..++.+.++
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~ea 126 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEV 126 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHH
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 93399999999999999999 5566888888877776664
No 39
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=9.2e-34 Score=206.99 Aligned_cols=116 Identities=20% Similarity=0.360 Sum_probs=99.5
Q ss_pred CCc--HHHHHHHHHHHc----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 1 MSS--PSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 1 Ms~--~~kRl~kEl~~l----~~~~i~v~~~~-~--d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
||. +.+||++|++++ ++.++++.+.. + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 664 678999999986 46689998853 3 49999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeE--eccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 72 IYHPNVDELSGSV--CLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 72 i~HPnI~~~~G~i--Cl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
||||||+..+|.| |+++|. +|+|++ .+..++.+|+..++.+.++.
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~ 135 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 135 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchh
Confidence 9999999545999 999886 799999 55668889888887777663
No 40
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.5e-33 Score=212.84 Aligned_cols=116 Identities=20% Similarity=0.465 Sum_probs=100.6
Q ss_pred CCc-HHHHHHHHHHHcC-----C-----C----CcEEEe-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q 032400 1 MSS-PSKRREMDLMKLM-----M-----S----DYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l~-----~-----~----~i~v~~-~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP 64 (141)
||+ +.+||++|++++. . + ++.+.+ .++|+++|+++|.||++|||+||.|+|.|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 665 7899999999752 1 3 355677 7789999999999999999999999999999999999999
Q ss_pred eEEEec-ccccCcccCCCCeEeccCCC-CCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 65 SIGFVN-KIYHPNVDELSGSVCLDVIN-QTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 65 ~V~F~t-~i~HPnI~~~~G~iCl~~L~-~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
+|+|.| +||||||+..+|.||+++|. ++|+|++ .+..++.+|+..++.+.++
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~a 143 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDI 143 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHH
Confidence 999999 99999996469999999998 8999999 5556888998888877766
No 41
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7.1e-33 Score=206.42 Aligned_cols=114 Identities=16% Similarity=0.289 Sum_probs=99.9
Q ss_pred CcHHHHHHHHHHHc----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 032400 2 SSPSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (141)
Q Consensus 2 s~~~kRl~kEl~~l----~~~~i~v~~~~-~--d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~H 74 (141)
..+.+||++|++++ ++.++++.+.. + |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 34789999999976 45689998854 3 59999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCeE---eccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 75 PNVDELSGSV---CLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 75 PnI~~~~G~i---Cl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
|||+ .+|.| |+++|. +|+|++ .+..++.+|+..++.+.++.
T Consensus 100 PNV~-~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa 150 (156)
T 2q0v_A 100 SCVD-NCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEG 150 (156)
T ss_dssp TTBC-TTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTT
T ss_pred CCCc-cCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHH
Confidence 9999 68999 888886 599999 55568888888887777763
No 42
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=3.1e-33 Score=209.78 Aligned_cols=113 Identities=26% Similarity=0.494 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEec-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~-~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI 77 (141)
+.+.+||++|++++ ++.||++.+. +++++.|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 45789999999987 6779999865 57899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCC------CCchHH-------HHHHHhCC-cCcCCCCCCCC
Q 032400 78 DELSGSVCLDVINQ------TWSPMF-------EFCEKYAK-PEDIGGATEEK 116 (141)
Q Consensus 78 ~~~~G~iCl~~L~~------~WsP~~-------~~~~~~~~-pe~~~~~~~~~ 116 (141)
+ .+|.||+++|.. +|+|++ .+..++.+ |+..++.+.|+
T Consensus 92 ~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~ea 143 (167)
T 3fn1_B 92 T-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 143 (167)
T ss_dssp C-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHH
T ss_pred C-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHH
Confidence 9 799999999975 799998 44456677 57666666555
No 43
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-34 Score=215.00 Aligned_cols=112 Identities=52% Similarity=0.939 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccCCCCe
Q 032400 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (141)
Q Consensus 4 ~~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~~~G~ 83 (141)
+.+||++|++++....+.+ ..++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+..+|.
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5799999999885444555 357899999999999999999999999999999999999999999999999999955999
Q ss_pred EeccCCCCCCchHH-------HH-HHHhCCcCcCCCCCCCC
Q 032400 84 VCLDVINQTWSPMF-------EF-CEKYAKPEDIGGATEEK 116 (141)
Q Consensus 84 iCl~~L~~~WsP~~-------~~-~~~~~~pe~~~~~~~~~ 116 (141)
||+++|.++|+|++ .+ ..++.+|+..++.+.++
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~a 132 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHH
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHH
Confidence 99999999999999 23 35788888887777665
No 44
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=210.48 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHc---CCCC-cEEEe-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccC
Q 032400 3 SPSKRREMDLMKL---MMSD-YKVEM-INDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~-i~v~~-~~~d--~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HP 75 (141)
.+.+||++|++++ ++.| +.+.+ .++| +++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||
T Consensus 35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP 114 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 114 (170)
T ss_dssp CHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccC
Confidence 3789999999976 4456 67776 4554 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCCC--CCCchHH-------HHHHHhC-CcCcCCCCCCCCC
Q 032400 76 NVDELSGSVCLDVIN--QTWSPMF-------EFCEKYA-KPEDIGGATEEKS 117 (141)
Q Consensus 76 nI~~~~G~iCl~~L~--~~WsP~~-------~~~~~~~-~pe~~~~~~~~~~ 117 (141)
||+..+|.||+++|. ++|+|++ .+..++. .|...+++..|++
T Consensus 115 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 115 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 998569999999997 8999999 4444665 5888888877774
No 45
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.7e-33 Score=211.34 Aligned_cols=97 Identities=28% Similarity=0.552 Sum_probs=90.8
Q ss_pred CCc-HHHHHHHHHHHc---C------------CCCcEEEecCCCceeEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCC
Q 032400 1 MSS-PSKRREMDLMKL---M------------MSDYKVEMINDGMQEFYVEFNGPKESSYQ--GGVWKIRVELPDAYPYK 62 (141)
Q Consensus 1 Ms~-~~kRl~kEl~~l---~------------~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~--gg~f~~~i~fp~~YP~~ 62 (141)
||+ +.|||++|++++ + ..++.+.+.++|+++|+++|.||++|||+ ||.|++.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 665 689999999976 3 56889999999999999999999999999 99999999999999999
Q ss_pred CCeEEEecccccCcccCCCCeEeccCCCCCCchHHH
Q 032400 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFE 98 (141)
Q Consensus 63 pP~V~F~t~i~HPnI~~~~G~iCl~~L~~~WsP~~~ 98 (141)
||+|+|.|+||||||+ .+|.||+++|.++|+|+++
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~ 119 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQH 119 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSC
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCC
Confidence 9999999999999999 7999999999999999993
No 46
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=5.9e-33 Score=212.62 Aligned_cols=115 Identities=24% Similarity=0.514 Sum_probs=104.2
Q ss_pred CCcHHHHHHHHHHHc-CCCCcEEE----ecCCCce---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc
Q 032400 1 MSSPSKRREMDLMKL-MMSDYKVE----MINDGMQ---EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l-~~~~i~v~----~~~~d~~---~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i 72 (141)
++.+.+||++|++++ .++++++. +.++|++ +|+++|. |++|||+||.|++.|.||++||++||+|+|.|+|
T Consensus 27 ~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 105 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKI 105 (190)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCc
Confidence 356799999999998 56789988 7888999 9999997 8889999999999999999999999999999999
Q ss_pred ccCcccCCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 73 YHPNVDELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 73 ~HPnI~~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
|||||+ .+|.||+++|.++|+|++ .+..++.+|+..++.+.++.
T Consensus 106 ~HPnV~-~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa 156 (190)
T 3o2u_A 106 FHPNID-LKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156 (190)
T ss_dssp CCTTBC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHH
T ss_pred ccCCCC-CCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHH
Confidence 999999 699999999999999998 55668899998888877763
No 47
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.98 E-value=8.8e-33 Score=204.88 Aligned_cols=111 Identities=28% Similarity=0.576 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHc---CCCCcEEEe-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 4 PSKRREMDLMKL---MMSDYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~~i~v~~-~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
+.+||++|++++ ++.|+.+.. .++|+++|+++|. |++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID- 80 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC-
Confidence 568999999987 456887554 6779999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCC-CCCchHH-------HHHHHhCCcCcCCCCCCCC
Q 032400 80 LSGSVCLDVIN-QTWSPMF-------EFCEKYAKPEDIGGATEEK 116 (141)
Q Consensus 80 ~~G~iCl~~L~-~~WsP~~-------~~~~~~~~pe~~~~~~~~~ 116 (141)
.+|.||+++|. ++|+|++ .+..++.+|+..++.+.++
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a 125 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHH
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHH
Confidence 69999999996 8999999 4556888888877776665
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.97 E-value=3.1e-32 Score=228.38 Aligned_cols=115 Identities=30% Similarity=0.655 Sum_probs=106.1
Q ss_pred CcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCccc
Q 032400 2 SSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (141)
Q Consensus 2 s~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~ 78 (141)
+.+.|||++|++++ +++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 45789999999976 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCchHH-------HHHHHhCCcCcCCCCCCCCC
Q 032400 79 ELSGSVCLDVINQTWSPMF-------EFCEKYAKPEDIGGATEEKS 117 (141)
Q Consensus 79 ~~~G~iCl~~L~~~WsP~~-------~~~~~~~~pe~~~~~~~~~~ 117 (141)
.+|.||+++|.++|+|++ .+..++.+|++.++.+.++.
T Consensus 82 -~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa 126 (399)
T 4ddg_A 82 -SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126 (399)
T ss_dssp -TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHH
T ss_pred -CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHH
Confidence 699999999999999999 55668899998888777663
No 49
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.7e-30 Score=198.57 Aligned_cols=104 Identities=19% Similarity=0.473 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccCcccC
Q 032400 3 SPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (141)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPnI~~ 79 (141)
.+.+||++|++++ ++.||.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+ ||||+
T Consensus 14 ~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~- 90 (187)
T 2f4w_A 14 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK- 90 (187)
T ss_dssp CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec-
Confidence 3689999999976 67799999999999999999999999999999999999999999999999999998 99999
Q ss_pred CCCeEeccCC---CCCCchHH-------HHHHHhCCcCcC
Q 032400 80 LSGSVCLDVI---NQTWSPMF-------EFCEKYAKPEDI 109 (141)
Q Consensus 80 ~~G~iCl~~L---~~~WsP~~-------~~~~~~~~pe~~ 109 (141)
.+|.|||++| .++|+|++ .+..++.+|+..
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~ 130 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 130 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCC
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence 6999999999 68999999 455577777764
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=2.1e-31 Score=203.47 Aligned_cols=104 Identities=21% Similarity=0.431 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHc---C---CCCcEEEecCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCe
Q 032400 4 PSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGP-KESSYQG-----------GVWKIRVELPDAYPYKSPS 65 (141)
Q Consensus 4 ~~kRl~kEl~~l---~---~~~i~v~~~~~d~~~w~v~i~Gp-~~tpY~g-----------g~f~~~i~fp~~YP~~pP~ 65 (141)
+.+||++|++++ + +.++.+.+.++|+++|+++|.|| ++|||+| |.|+|.|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 689999999987 2 46799999999999999999998 9999998 8999999999999999999
Q ss_pred EEEecccccC-cccCCCCeEeccCCC-CCCchHH-------HHHHHhCCcCc
Q 032400 66 IGFVNKIYHP-NVDELSGSVCLDVIN-QTWSPMF-------EFCEKYAKPED 108 (141)
Q Consensus 66 V~F~t~i~HP-nI~~~~G~iCl~~L~-~~WsP~~-------~~~~~~~~pe~ 108 (141)
|+|.|++||| ||+ .+|.|||++|. ++|+|++ .+..++.+|++
T Consensus 108 V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a 158 (186)
T 1zuo_A 108 VRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKA 158 (186)
T ss_dssp EEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCCh
Confidence 9999999999 699 79999999997 7899999 44557777754
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=207.40 Aligned_cols=112 Identities=21% Similarity=0.434 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHc---CCC----CcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc-----
Q 032400 4 PSKRREMDLMKL---MMS----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK----- 71 (141)
Q Consensus 4 ~~kRl~kEl~~l---~~~----~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~----- 71 (141)
+.+||++|++.+ ++. ++.+.+.++|++.|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 689999999976 344 45577889999999999999999999999999999999999999999999998
Q ss_pred cccCcccCCCCeEeccCCC-------CCCchHH--------HHHHHhC--CcCcCCCCCCCC
Q 032400 72 IYHPNVDELSGSVCLDVIN-------QTWSPMF--------EFCEKYA--KPEDIGGATEEK 116 (141)
Q Consensus 72 i~HPnI~~~~G~iCl~~L~-------~~WsP~~--------~~~~~~~--~pe~~~~~~~~~ 116 (141)
||||||+ .+|.|||++|. ++|+|++ .+..++. +|...++..+++
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a 217 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS 217 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGG
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHH
Confidence 9999999 79999999997 6899987 3444564 565566665554
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.91 E-value=1.2e-26 Score=173.82 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeEEEecc-cc
Q 032400 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (141)
Q Consensus 5 ~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~V~F~t~-i~ 73 (141)
.+||++|++.+.. ++.+..+|+..|.+.+.||.+|+|+|| .|+++|.||.+||++||+|+|.+. +|
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 7899999998755 466677899999999999999999999 999999999999999999999998 99
Q ss_pred cCcccCCCCeEeccCC-CC---CCchHHHHHHHh
Q 032400 74 HPNVDELSGSVCLDVI-NQ---TWSPMFEFCEKY 103 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L-~~---~WsP~~~~~~~~ 103 (141)
||||| .+|+|||++| +. .|+|++.+..++
T Consensus 111 hpnmY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 111 TAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp CSSBC-TTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCCC-CCCcEechhhccccccccCCccCHHHHH
Confidence 99999 6999999999 44 345999555544
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.69 E-value=2.2e-18 Score=126.99 Aligned_cols=86 Identities=16% Similarity=0.374 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeEEEecc-cc
Q 032400 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (141)
Q Consensus 5 ~kRl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~V~F~t~-i~ 73 (141)
.+||..|+..|.. +++...++-..|...+.|+.||+|.|+ .|.++|.||.+||..||+|+|.+. .+
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4688888876532 234445567789999999999999999 999999999999999999999995 89
Q ss_pred cCcccCCCCeEeccCCCCCCchHH
Q 032400 74 HPNVDELSGSVCLDVINQTWSPMF 97 (141)
Q Consensus 74 HPnI~~~~G~iCl~~L~~~WsP~~ 97 (141)
|||++ .+|+|||+++ |+|.+
T Consensus 113 t~kmY-r~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 113 TVKMY-RGGKICMTTH---FFPLW 132 (168)
T ss_dssp CSSEE-TTTEECCCTT---HHHHH
T ss_pred Ccccc-CCCcEEeccc---cchhh
Confidence 99999 6999999996 99998
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.64 E-value=4e-16 Score=116.60 Aligned_cols=102 Identities=20% Similarity=0.350 Sum_probs=78.5
Q ss_pred HHHHHHHHHc--CCCC----cEEEecCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCeEEEec------
Q 032400 6 KRREMDLMKL--MMSD----YKVEMINDGMQEFYVEFNGPKESSYQGGV---WKIRVELPDAYPYKSPSIGFVN------ 70 (141)
Q Consensus 6 kRl~kEl~~l--~~~~----i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~---f~~~i~fp~~YP~~pP~V~F~t------ 70 (141)
+|..+|+..+ .-+. ..+...++....+.+.+.|.-..+|+|++ |.+.|-||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 4555666654 1222 33455667778888888888889999999 8899999999999999997755
Q ss_pred -c---cc-cCcccCCCCeEeccCCCCCCchHH--------HHHHHhCCcCcC
Q 032400 71 -K---IY-HPNVDELSGSVCLDVINQTWSPMF--------EFCEKYAKPEDI 109 (141)
Q Consensus 71 -~---i~-HPnI~~~~G~iCl~~L~~~WsP~~--------~~~~~~~~pe~~ 109 (141)
+ |+ ||||| .+|+||+++| ++|+|.. .+.++|.+|+.-
T Consensus 111 ~~~~~I~~hpnVD-~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d 160 (162)
T 3r3q_A 111 TISSSLPIQEYID-SNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQD 160 (162)
T ss_dssp TSCTTSTHHHHBC-TTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred ccccccCCCCCCC-CCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCC
Confidence 1 77 99999 7999999999 4699943 566677777653
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.29 E-value=2.4e-12 Score=94.63 Aligned_cols=62 Identities=26% Similarity=0.530 Sum_probs=54.8
Q ss_pred CCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCeEEEecc------cccCcccCCCCeEeccCCCCCCch
Q 032400 27 DGMQEFYVEFNGPKESSYQGGVWKI--RVELPDAYPYKSPSIGFVNK------IYHPNVDELSGSVCLDVINQTWSP 95 (141)
Q Consensus 27 ~d~~~w~v~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~V~F~t~------i~HPnI~~~~G~iCl~~L~~~WsP 95 (141)
.+++.|.++|. .+|+|++|.+ .|-||.+||++||.| |.++ .+||||| .+|+||+++|.+ |++
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~ 120 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKH 120 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCT
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCC
Confidence 47889999998 6799999995 888999999999999 7765 5899999 799999999955 988
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.28 E-value=0.016 Score=40.16 Aligned_cols=68 Identities=12% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHHHc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 032400 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (141)
Q Consensus 1 Ms~~~kRl~kEl~~l---~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t 70 (141)
|+....+...|+.-| -...+.+ .......+.+.+..-.+..-..-.+.+.|.||.+||..||.|.+.+
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 444455666777654 2333332 2333456666665322222223478899999999999999998765
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.25 Score=34.43 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=30.0
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 29 ~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
...+.+.+....+ .-..-.+.+.|.||.+||..+|.|.+.+.
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4567777774322 11134788999999999999999998753
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.45 E-value=0.26 Score=33.82 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHHHHc---CCCCcEEEecC--CCceeEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 6 KRREMDLMKL---MMSDYKVEMIN--DGMQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 6 kRl~kEl~~l---~~~~i~v~~~~--~d~~~w~v~i~Gp~~tpY--~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
.++..|+.-| -...+.+.-.. .....+.+.+..+.+..- ..-.+.+.|.||.+||..+|.|.+.+.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 3455666544 33344332111 234555666653322111 124788999999999999999988763
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.88 E-value=1.1 Score=30.92 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.0
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEec
Q 032400 47 GVWKIRVELPDAYPYKSPSIGFVN 70 (141)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~V~F~t 70 (141)
-.+.+.|.||.+||..+|.|.+..
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEec
Confidence 468899999999999999998853
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.43 E-value=0.33 Score=33.43 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=28.7
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 032400 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (141)
Q Consensus 29 ~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t 70 (141)
...+.+.+...... =..-.+.+.|.||.+||..+|.|.+.+
T Consensus 39 ~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 45777777632210 012478999999999999999987664
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.13 E-value=0.5 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 032400 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
.+.+.|.||.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.23 E-value=0.37 Score=34.27 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 032400 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
.+.+.|.||.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999988864
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=65.49 E-value=22 Score=26.39 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc
Q 032400 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (141)
Q Consensus 7 Rl~kEl~~l~~~~i~v~~~~~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i 72 (141)
+|.+|+..+-=.. +.-.+.++...++.+..-. |-...++|.++.+||.++|.+...-|+
T Consensus 5 ~li~Ei~~iGW~~--l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~ 63 (186)
T 3zqs_A 5 SLIEEIGTLGWDK--LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV 63 (186)
T ss_dssp SHHHHHHHHCGGG--EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS
T ss_pred HHHHHHHHhCCce--eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC
Confidence 5677777662221 2222457888888888544 557899999999999999987665543
No 64
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=37.71 E-value=86 Score=22.96 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 032400 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (141)
Q Consensus 27 ~d~~~w~v~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~V~F~t~ 71 (141)
+...+|.|.+.|+.+.-...-+=++.+.|.+.|+. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 46789999999986643333466788889999975 55555543
No 65
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=33.54 E-value=1.3e+02 Score=21.28 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=31.4
Q ss_pred ceeEE--EEEeCCCCCCCC-CcEEEEEEEcCCCCCCCCCeEEEecccc
Q 032400 29 MQEFY--VEFNGPKESSYQ-GGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (141)
Q Consensus 29 ~~~w~--v~i~Gp~~tpY~-gg~f~~~i~fp~~YP~~pP~V~F~t~i~ 73 (141)
..+|. +.+.|+.+.-.. .-.=++.+.|.+.|+. |...+..+-|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 47998 899999887654 3455788888898874 7777766544
No 66
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=28.57 E-value=18 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.8
Q ss_pred ccccCcccCCCCeEeccCC
Q 032400 71 KIYHPNVDELSGSVCLDVI 89 (141)
Q Consensus 71 ~i~HPnI~~~~G~iCl~~L 89 (141)
|-+|||-...+|.||---+
T Consensus 67 P~lnP~~~lItGvICGvRV 85 (123)
T 3c9p_A 67 PYYVPERIAITGKICGVRI 85 (123)
T ss_dssp SCCCGGGGGCCSEETTEEG
T ss_pred cccCccHHHhcccccceeh
Confidence 6789999889999997443
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=26.50 E-value=62 Score=24.20 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=21.6
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeEEEec
Q 032400 46 GGVWKIRVELPDAYPY-----KSPSIGFVN 70 (141)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~V~F~t 70 (141)
.|.|.|+-.+|--||. +||.|.|.-
T Consensus 110 ~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 110 TGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 5889999999999998 799988763
No 68
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=20.12 E-value=51 Score=22.95 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCCCeEEEe---cccccCcccCCCCeEeccCCCCCCchHHHHHHHhCC
Q 032400 61 YKSPSIGFV---NKIYHPNVDELSGSVCLDVINQTWSPMFEFCEKYAK 105 (141)
Q Consensus 61 ~~pP~V~F~---t~i~HPnI~~~~G~iCl~~L~~~WsP~~~~~~~~~~ 105 (141)
..||.|.|. +.--|++|. .+|.+|+++|..+- .+++..|+.
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~-~~~~F~Vnvl~~~~---~~~~~~fa~ 85 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLK-DLPSLGISVLGEAH---DTAARTLAA 85 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHT-TSSCEEEEECBTTC---HHHHHHHHC
T ss_pred CCCcEEEEEECCCCchHHHHH-hCCEEEEEECCHHH---HHHHHHhcC
Confidence 357888776 345799998 79999999997543 345556655
Done!