BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032401
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V3M|A Chain A, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|B Chain B, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|C Chain C, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|D Chain D, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|E Chain E, Structure Of The Gar1 Domain Of Naf1
 pdb|2V3M|F Chain F, Structure Of The Gar1 Domain Of Naf1
          Length = 131

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 77  RNGFFFCLEDRAILCRQCDVSIHMASPF----LSSHQRFLIGGIKVALESSA 124
           + G  FCLEDR ++    +V   + +PF    L   ++ L   +KV L   A
Sbjct: 58  KEGSIFCLEDRTLIGXLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKA 109


>pdb|2ENN|A Chain A, Solution Structure Of The First C1 Domain From Human
          Protein Kinase C Theta
          Length = 77

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIH 99
          Q   C +C E   F + L  +   CRQC+ +IH
Sbjct: 33 QPTFCSVCHE---FVWGLNKQGYQCRQCNAAIH 62


>pdb|2YUU|A Chain A, Solution Structure Of The First Phorbol
          EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
          Kinase C, Delta
          Length = 83

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIH 99
          Q   C +C++   F + L  +   CRQC+ +IH
Sbjct: 27 QPTFCSVCKD---FVWGLNKQGYKCRQCNAAIH 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.133    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,195,485
Number of Sequences: 62578
Number of extensions: 88338
Number of successful extensions: 285
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)