Query 032401
Match_columns 141
No_of_seqs 137 out of 586
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.3 1.3E-12 4.5E-17 90.1 4.8 93 2-114 3-100 (101)
2 2did_A Tripartite motif protei 97.6 5.6E-05 1.9E-09 46.1 3.5 45 67-118 7-52 (53)
3 2d8u_A Ubiquitin ligase TRIM63 97.5 4.5E-05 1.6E-09 48.0 2.7 50 64-119 4-54 (64)
4 2dja_A Midline-2; tripartite m 97.5 0.00011 3.6E-09 48.6 4.2 48 66-119 16-64 (84)
5 2yvr_A Transcription intermedi 97.5 5.2E-05 1.8E-09 45.6 2.2 44 68-117 6-49 (50)
6 3ddt_A E3 ubiquitin-protein li 97.2 0.00024 8.4E-09 42.3 2.8 42 67-114 5-47 (48)
7 2yrg_A Tripartite motif-contai 97.0 0.00076 2.6E-08 42.1 3.9 43 68-117 14-57 (59)
8 2csv_A Tripartite motif protei 96.9 0.00028 9.6E-09 45.5 1.5 46 67-119 17-62 (72)
9 1fre_A Nuclear factor XNF7; zi 96.6 0.00094 3.2E-08 38.5 1.8 30 70-100 5-35 (42)
10 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0036 1.2E-07 42.2 2.4 43 69-111 4-49 (101)
11 2egm_A Tripartite motif-contai 95.7 0.0044 1.5E-07 38.3 1.9 32 68-100 18-50 (57)
12 2ffw_A Midline-1; B-BOX, ring 95.6 0.0081 2.8E-07 39.5 2.9 43 2-44 30-75 (78)
13 2d8v_A Zinc finger FYVE domain 94.5 0.057 1.9E-06 34.9 4.5 56 63-120 3-59 (67)
14 2ffw_A Midline-1; B-BOX, ring 92.7 0.094 3.2E-06 34.2 3.2 44 68-111 30-76 (78)
15 2d8v_A Zinc finger FYVE domain 88.0 0.7 2.4E-05 29.7 4.1 46 2-49 8-54 (67)
16 2did_A Tripartite motif protei 85.6 0.83 2.8E-05 27.0 3.3 38 3-47 9-47 (53)
17 2yvr_A Transcription intermedi 82.3 1.3 4.4E-05 25.7 3.2 39 3-47 7-45 (50)
18 3ddt_A E3 ubiquitin-protein li 82.1 1.3 4.5E-05 25.5 3.1 37 5-47 9-46 (48)
19 2yrg_A Tripartite motif-contai 80.3 1.7 6E-05 26.4 3.3 38 3-47 15-53 (59)
20 2fc7_A ZZZ3 protein; structure 76.9 4.3 0.00015 26.6 4.6 32 69-100 22-60 (82)
21 2egm_A Tripartite motif-contai 75.9 1.4 4.6E-05 26.7 1.8 31 4-35 20-51 (57)
22 2d8u_A Ubiquitin ligase TRIM63 73.9 1.8 6.1E-05 26.3 2.0 40 3-48 9-49 (64)
23 4hc9_A Trans-acting T-cell-spe 73.2 1.3 4.5E-05 31.0 1.4 82 2-98 5-90 (115)
24 1fre_A Nuclear factor XNF7; zi 72.6 1.7 5.8E-05 24.2 1.6 31 4-35 5-36 (42)
25 2dja_A Midline-2; tripartite m 68.9 2.4 8.2E-05 27.1 1.9 38 4-47 20-58 (84)
26 1z60_A TFIIH basal transcripti 68.5 1.7 5.8E-05 27.1 1.0 31 71-101 18-51 (59)
27 2csv_A Tripartite motif protei 67.8 4.5 0.00016 25.1 3.0 39 3-48 19-57 (72)
28 2e5r_A Dystrobrevin alpha; ZZ 65.5 10 0.00036 23.4 4.3 32 69-100 12-47 (63)
29 1z60_A TFIIH basal transcripti 65.4 2 6.7E-05 26.8 0.8 32 4-35 17-51 (59)
30 2jne_A Hypothetical protein YF 64.4 8.6 0.00029 26.5 4.0 26 1-30 31-56 (101)
31 2yqq_A Zinc finger HIT domain- 64.3 7.5 0.00025 23.9 3.4 24 69-93 13-36 (56)
32 2dip_A Zinc finger SWIM domain 59.7 5.2 0.00018 27.2 2.2 30 69-98 32-65 (98)
33 1tot_A CREB-binding protein; z 57.3 2.6 8.8E-05 25.4 0.3 29 70-98 8-38 (52)
34 2fc7_A ZZZ3 protein; structure 53.8 27 0.00092 22.7 4.9 46 2-47 21-73 (82)
35 2jrp_A Putative cytoplasmic pr 47.0 39 0.0013 22.2 4.8 26 1-30 1-26 (81)
36 1x4s_A Protein FON, zinc finge 45.2 12 0.00042 23.2 2.1 28 69-96 12-43 (59)
37 2ea5_A Cell growth regulator w 41.7 23 0.00079 21.6 3.0 33 65-97 12-45 (68)
38 2d8t_A Dactylidin, ring finger 41.6 18 0.00061 21.8 2.4 35 63-97 10-44 (71)
39 1weo_A Cellulose synthase, cat 39.2 11 0.00038 25.5 1.2 30 67-96 15-51 (93)
40 2ect_A Ring finger protein 126 34.2 65 0.0022 19.4 4.3 58 64-127 11-71 (78)
41 2ct2_A Tripartite motif protei 33.1 31 0.0011 21.2 2.7 35 63-97 10-48 (88)
42 1faq_A RAF-1; transferase, ser 32.3 17 0.00059 20.8 1.2 27 2-35 14-40 (52)
43 2csy_A Zinc finger protein 183 31.6 36 0.0012 20.9 2.7 34 64-97 11-44 (81)
44 2ecv_A Tripartite motif-contai 31.1 36 0.0012 20.6 2.7 34 64-97 15-48 (85)
45 2ecj_A Tripartite motif-contai 31.1 25 0.00087 19.8 1.8 34 64-97 11-44 (58)
46 2ecw_A Tripartite motif-contai 26.2 43 0.0015 20.2 2.4 33 65-97 16-48 (85)
47 2e6s_A E3 ubiquitin-protein li 25.9 36 0.0012 21.7 2.0 35 67-102 9-55 (77)
48 2ea6_A Ring finger protein 4; 25.9 27 0.00092 20.4 1.3 35 63-97 10-51 (69)
49 1bor_A Transcription factor PM 24.1 1.1E+02 0.0036 17.4 3.8 30 68-97 6-35 (56)
50 3h0g_I DNA-directed RNA polyme 23.1 59 0.002 22.0 2.8 18 66-83 70-87 (113)
51 2olm_A Nucleoporin-like protei 22.5 44 0.0015 23.8 2.1 32 3-35 26-57 (140)
52 2ysl_A Tripartite motif-contai 22.5 69 0.0024 18.8 2.8 34 65-98 17-50 (73)
53 2ecn_A Ring finger protein 141 22.3 62 0.0021 19.0 2.5 32 65-97 12-43 (70)
54 3asl_A E3 ubiquitin-protein li 20.8 27 0.00094 21.8 0.6 16 86-101 31-46 (70)
55 1qxf_A GR2, 30S ribosomal prot 20.4 29 0.001 22.0 0.6 31 1-32 6-36 (66)
56 2yt5_A Metal-response element- 20.2 78 0.0027 18.9 2.6 33 67-102 5-37 (66)
57 2lvu_A Zinc finger and BTB dom 25.1 23 0.00077 16.0 0.0 22 23-45 3-24 (26)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=90.13 Aligned_cols=93 Identities=22% Similarity=0.467 Sum_probs=76.0
Q ss_pred CCcccccCC---CceEEEeeCCCcccchhhhhccccCCCCCCCeeEE-EecccchhcccCCCCCCCCCCCCCCccccCCc
Q 032401 2 KLQCEVCEK---AEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRF-SLLKHNAAAASSSSSSSPSASQLPSCDICQER 77 (141)
Q Consensus 2 ~~~C~~C~~---~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv-~l~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~ 77 (141)
...|++|.+ .+|+.+|..+.+.||..|...+|..++.+++|..+ |+. ........|+.|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~--------------~~~~~~~~C~~H~~e 68 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIP--------------DSHIRGLMCLEHEDE 68 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCC--------------SCCSSCCCCSSCSSS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeecccc--------------ccCccCCcCcCcCCC
Confidence 367999984 68999999999999999999889988888899876 441 112244579999989
Q ss_pred ceEEEccCccccccccccc-cccCCCCCcCCCcceeee
Q 032401 78 NGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIG 114 (141)
Q Consensus 78 ~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~ 114 (141)
+..+||..|..++|..|.. ..|. .|..+||.
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTS------SSCBCCCC
T ss_pred cceEECCCCCCccchhcCCCCCcC------CCCeecCC
Confidence 9999999999999999987 5674 67777765
No 2
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=97.58 E-value=5.6e-05 Score=46.07 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=37.2
Q ss_pred CCCCccccCCcceEEEccCccccccccccc-cccCCCCCcCCCcceeeecccc
Q 032401 67 QLPSCDICQERNGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIGGIKV 118 (141)
Q Consensus 67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~~~~~ 118 (141)
....|+.|+ ++..+||..|..++|..|.. ..|. .|..+||.++..
T Consensus 7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 52 (53)
T 2did_A 7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPSS 52 (53)
T ss_dssp SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTTT
T ss_pred CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHhc
Confidence 345699998 89999999999999999987 4463 788888887653
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=97.53 E-value=4.5e-05 Score=47.97 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=40.3
Q ss_pred CCCCCCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeeeccccc
Q 032401 64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIGGIKVA 119 (141)
Q Consensus 64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~~~~~~ 119 (141)
+......|+.|+..+..+||..|..++|..|... .|. .|..+||..+...
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 3444557999988999999999999999999875 564 7888888876654
No 4
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=97.49 E-value=0.00011 Score=48.64 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCCCCccccCCcceEEEccCccccccccccc-cccCCCCCcCCCcceeeeccccc
Q 032401 66 SQLPSCDICQERNGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIGGIKVA 119 (141)
Q Consensus 66 ~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~~~~~~ 119 (141)
.....|+.|+..+..+||..|..++|..|.. ..|. .|..+||..+...
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~ 64 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 64 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence 3445799998899999999999999999988 4564 7888888876543
No 5
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=97.46 E-value=5.2e-05 Score=45.63 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=36.3
Q ss_pred CCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceeeeccc
Q 032401 68 LPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIK 117 (141)
Q Consensus 68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~ 117 (141)
...|+.|+..+..+||..|..++|..|....|. .|..+||..+.
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea~ 49 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDAV 49 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC--
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHHh
Confidence 345999988999999999999999999887664 78888887653
No 6
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=97.17 E-value=0.00024 Score=42.35 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=34.3
Q ss_pred CCCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeee
Q 032401 67 QLPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIG 114 (141)
Q Consensus 67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~ 114 (141)
+...|..|+.++..+||..|..++|..|... .|. .|..+||.
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 4456999998899999999999999999754 564 67777764
No 7
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00076 Score=42.11 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=35.9
Q ss_pred CCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeeeccc
Q 032401 68 LPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIGGIK 117 (141)
Q Consensus 68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~~~~ 117 (141)
...|..|+ .+..+||..|...||..|... .|. .|..+||.++.
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~ 57 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS 57 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence 35699997 789999999999999999874 464 78888888765
No 8
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=96.92 E-value=0.00028 Score=45.51 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=38.2
Q ss_pred CCCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceeeeccccc
Q 032401 67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVA 119 (141)
Q Consensus 67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~~~ 119 (141)
....|+.|+ .+..+||..|..++|..|....|. .|..+||.++...
T Consensus 17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~~ 62 (72)
T 2csv_A 17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKAE 62 (72)
T ss_dssp SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHHH
T ss_pred ccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHHH
Confidence 445799995 899999999999999999886564 7888898876554
No 9
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=96.57 E-value=0.00094 Score=38.50 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=26.1
Q ss_pred CccccCCcceEEEccCcccccccccccc-ccC
Q 032401 70 SCDICQERNGFFFCLEDRAILCRQCDVS-IHM 100 (141)
Q Consensus 70 ~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~ 100 (141)
.|..|+ ++..+||..|...+|..|..+ .|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 599997 789999999999999999884 454
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.94 E-value=0.0036 Score=42.16 Aligned_cols=43 Identities=16% Similarity=0.462 Sum_probs=37.0
Q ss_pred CCccccCC---cceEEEccCccccccccccccccCCCCCcCCCcce
Q 032401 69 PSCDICQE---RNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRF 111 (141)
Q Consensus 69 ~~Cd~C~~---~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~ 111 (141)
..|++|.. .++..+|..|...||..|....|..+....+|+.+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 34999984 68999999999999999999889877777788876
No 11
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.0044 Score=38.30 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.2
Q ss_pred CCCccccCCcceEEEccCcccccccccccc-ccC
Q 032401 68 LPSCDICQERNGFFFCLEDRAILCRQCDVS-IHM 100 (141)
Q Consensus 68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~ 100 (141)
...|..|+ ++..+||..|...||..|... .|.
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 44699995 899999999999999999874 464
No 12
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=95.58 E-value=0.0081 Score=39.50 Aligned_cols=43 Identities=26% Similarity=0.551 Sum_probs=36.6
Q ss_pred CCcccccCC---CceEEEeeCCCcccchhhhhccccCCCCCCCeeE
Q 032401 2 KLQCEVCEK---AEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQR 44 (141)
Q Consensus 2 ~~~C~~C~~---~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~R 44 (141)
.+.|++|.. .+|+..|..+.+.||..|-...|...+.+++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999975 6799999999999999999766987777888864
No 13
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=94.52 E-value=0.057 Score=34.88 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=45.3
Q ss_pred CCCCCCCCccccCCcceEEEccCc-cccccccccccccCCCCCcCCCcceeeecccccc
Q 032401 63 PSASQLPSCDICQERNGFFFCLED-RAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120 (141)
Q Consensus 63 ~~~~~~~~Cd~C~~~~a~~~C~~d-~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~~~~ 120 (141)
......+.|-+|... |.+.|..| .-+.|..|-...|. ....+.|+-++....++.-
T Consensus 3 ~~~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~k~~ 59 (67)
T 2d8v_A 3 SGSSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRRPCQ 59 (67)
T ss_dssp SSCCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSSSSC
T ss_pred CcCcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCCCCc
Confidence 445667889999865 99999988 78999999999995 5677899999987665443
No 14
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=92.70 E-value=0.094 Score=34.24 Aligned_cols=44 Identities=16% Similarity=0.436 Sum_probs=36.1
Q ss_pred CCCccccCC---cceEEEccCccccccccccccccCCCCCcCCCcce
Q 032401 68 LPSCDICQE---RNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRF 111 (141)
Q Consensus 68 ~~~Cd~C~~---~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~ 111 (141)
...|++|.. .+|.-+|..|.+.+|..|-...|...+...+|.-+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 456999975 67999999999999999988778776666777654
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=88.01 E-value=0.7 Score=29.73 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCcccccCCCceEEEeeCC-CcccchhhhhccccCCCCCCCeeEEEecc
Q 032401 2 KLQCEVCEKAEAEVLCCAD-EAVLCSNCDVKVHTANKLSRKHQRFSLLK 49 (141)
Q Consensus 2 ~~~C~~C~~~~A~~~C~~d-~a~LC~~CD~~~H~an~l~~~H~Rv~l~~ 49 (141)
.+.|-+|... |++.|..+ ...+|..|=+..|. ..-.+.|+.+++..
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHP 54 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCC
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccC
Confidence 4679999974 99999988 78899999999996 45578999999943
No 16
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=85.61 E-value=0.83 Score=26.97 Aligned_cols=38 Identities=24% Similarity=0.591 Sum_probs=29.7
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL 47 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l 47 (141)
..|..-. .+-.+||..|...+|..|.. .-| +.|..+||
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l 47 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL 47 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeH
Confidence 4566555 57789999999999999985 445 45888888
No 17
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=82.32 E-value=1.3 Score=25.69 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=30.0
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEe
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL 47 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l 47 (141)
..|..-...+-.+||..|...+|..|-..-| +.|..++|
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l 45 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFL 45 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEET
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecH
Confidence 3566554456789999999999999986544 35888888
No 18
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=82.06 E-value=1.3 Score=25.52 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=26.9
Q ss_pred ccccCCCceEEEeeCCCcccchhhh-hccccCCCCCCCeeEEEe
Q 032401 5 CEVCEKAEAEVLCCADEAVLCSNCD-VKVHTANKLSRKHQRFSL 47 (141)
Q Consensus 5 C~~C~~~~A~~~C~~d~a~LC~~CD-~~~H~an~l~~~H~Rv~l 47 (141)
|..=...+-.+||..|...+|..|. ..-|. .|..+||
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4443335578999999999999996 33454 4777777
No 19
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.32 E-value=1.7 Score=26.35 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=29.1
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL 47 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l 47 (141)
..|..-+ .+-.+||..|...+|..|.. .-| +.|..+||
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l 53 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPT 53 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEEC
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeH
Confidence 3465554 46789999999999999986 444 45888888
No 20
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=76.89 E-value=4.3 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCccccCCcce---EEEccCcc----ccccccccccccC
Q 032401 69 PSCDICQERNG---FFFCLEDR----AILCRQCDVSIHM 100 (141)
Q Consensus 69 ~~Cd~C~~~~a---~~~C~~d~----~~LC~~Cd~~~H~ 100 (141)
..|+.|...+. .|.|..|. .-||..|-...+.
T Consensus 22 ~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 35999998765 48999996 5799999877553
No 21
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.86 E-value=1.4 Score=26.72 Aligned_cols=31 Identities=23% Similarity=0.609 Sum_probs=24.0
Q ss_pred cccccCCCceEEEeeCCCcccchhhhh-ccccC
Q 032401 4 QCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTA 35 (141)
Q Consensus 4 ~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~a 35 (141)
+|..-+ .+-.+||..|...+|..|.. .-|..
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~~ 51 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHKQ 51 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHHS
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCCC
Confidence 465554 57789999999999999986 45653
No 22
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.93 E-value=1.8 Score=26.27 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=30.3
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEec
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSLL 48 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l~ 48 (141)
..|..-...+-.+||..|...+|..|.. .-|. .|..+||.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 49 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 49 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence 3566654557789999999999999975 3554 58888883
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=73.20 E-value=1.3 Score=31.02 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=51.0
Q ss_pred CCcccccCCCceEEEeeCCC-cccchhhh--hccccCCCCCCCeeEEEecccchhcccCCCCCCCCCCCCCCccccCCcc
Q 032401 2 KLQCEVCEKAEAEVLCCADE-AVLCSNCD--VKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPSASQLPSCDICQERN 78 (141)
Q Consensus 2 ~~~C~~C~~~~A~~~C~~d~-a~LC~~CD--~~~H~an~l~~~H~Rv~l~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~~ 78 (141)
...|..|+.....+|=+.+. ..||.+|. .+.|..|....+-.+.. ..+......|..|....
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~---------------~~~~~~~~~C~~C~t~~ 69 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL---------------SAARRAGTSCANCQTTT 69 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC---------------CCCCCTTCCCTTTCCSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc---------------cccccccccCCCcCCCC
Confidence 56799999766655555554 47999999 45566666543222211 12233446799998876
Q ss_pred eEEEc-cCccccccccccccc
Q 032401 79 GFFFC-LEDRAILCRQCDVSI 98 (141)
Q Consensus 79 a~~~C-~~d~~~LC~~Cd~~~ 98 (141)
...|= ..+...||..|-+..
T Consensus 70 tp~WRr~~~g~~lCNaCgl~~ 90 (115)
T 4hc9_A 70 TTLWRRNANGDPVCNACGLYY 90 (115)
T ss_dssp CSSCEECTTSCEECHHHHHHH
T ss_pred cceeEECCCCCCcchHHHHHH
Confidence 65554 234468999997654
No 24
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=72.58 E-value=1.7 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=23.4
Q ss_pred cccccCCCceEEEeeCCCcccchhhhh-ccccC
Q 032401 4 QCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTA 35 (141)
Q Consensus 4 ~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~a 35 (141)
+|..-+ .+-.+||..|...+|..|.. .-|..
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 455554 46789999999999999976 44543
No 25
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=68.85 E-value=2.4 Score=27.10 Aligned_cols=38 Identities=29% Similarity=0.652 Sum_probs=29.0
Q ss_pred cccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401 4 QCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL 47 (141)
Q Consensus 4 ~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l 47 (141)
.|..-...+-.+||..|...+|..|-. .-|. .|..+||
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 58 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASL 58 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCH
Confidence 455554456789999999999999986 4453 4777777
No 26
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=68.45 E-value=1.7 Score=27.14 Aligned_cols=31 Identities=29% Similarity=0.736 Sum_probs=24.5
Q ss_pred ccccCCc---ceEEEccCccccccccccccccCC
Q 032401 71 CDICQER---NGFFFCLEDRAILCRQCDVSIHMA 101 (141)
Q Consensus 71 Cd~C~~~---~a~~~C~~d~~~LC~~Cd~~~H~a 101 (141)
|-.|+.. ...+.|..|...+|.+||+-+|..
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 6666543 235779999999999999999964
No 27
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=67.83 E-value=4.5 Score=25.14 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=29.8
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEec
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLL 48 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l~ 48 (141)
..|..-+ .+-.+||..|...+|..|-..-|. .|..+||.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 3465553 577899999999999999764453 58888884
No 28
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.49 E-value=10 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCccccCCcc---eEEEccCc-cccccccccccccC
Q 032401 69 PSCDICQERN---GFFFCLED-RAILCRQCDVSIHM 100 (141)
Q Consensus 69 ~~Cd~C~~~~---a~~~C~~d-~~~LC~~Cd~~~H~ 100 (141)
..|+.|...| ..+.|..| ..-||..|-..+..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 4699998765 56889888 56699999777643
No 29
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=65.37 E-value=2 Score=26.82 Aligned_cols=32 Identities=31% Similarity=0.681 Sum_probs=24.7
Q ss_pred cccccCCCc---eEEEeeCCCcccchhhhhccccC
Q 032401 4 QCEVCEKAE---AEVLCCADEAVLCSNCDVKVHTA 35 (141)
Q Consensus 4 ~C~~C~~~~---A~~~C~~d~a~LC~~CD~~~H~a 35 (141)
.|-.|+..- .++.|..+...+|.+||.-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 366676633 24669999999999999999964
No 30
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.40 E-value=8.6 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=14.9
Q ss_pred CCCcccccCCCceEEEeeCCCcccchhhhh
Q 032401 1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDV 30 (141)
Q Consensus 1 m~~~C~~C~~~~A~~~C~~d~a~LC~~CD~ 30 (141)
|...|..|+...- + .+..+.|..|+.
T Consensus 31 M~~~CP~Cq~eL~--~--~g~~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHVLD--Q--DNGHARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSBEE--E--ETTEEEETTTCC
T ss_pred ccccCccCCCcce--e--cCCEEECccccc
Confidence 6667777775322 1 233445777765
No 31
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.33 E-value=7.5 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred CCccccCCcceEEEccCcccccccc
Q 032401 69 PSCDICQERNGFFFCLEDRAILCRQ 93 (141)
Q Consensus 69 ~~Cd~C~~~~a~~~C~~d~~~LC~~ 93 (141)
..|.+|+. ++.+.|..|.+..|..
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESSH
T ss_pred CccCcCcC-CCeeeCCCCCCCeeCH
Confidence 46999999 9999999999999973
No 32
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=59.75 E-value=5.2 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCccccCCcc---eEEEccCc-cccccccccccc
Q 032401 69 PSCDICQERN---GFFFCLED-RAILCRQCDVSI 98 (141)
Q Consensus 69 ~~Cd~C~~~~---a~~~C~~d-~~~LC~~Cd~~~ 98 (141)
..|+.|...+ ..|.|..| ..-||..|-...
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 4699999765 45889888 667999996654
No 33
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=57.35 E-value=2.6 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=22.1
Q ss_pred CccccCCc-ceEEEccCcccc-ccccccccc
Q 032401 70 SCDICQER-NGFFFCLEDRAI-LCRQCDVSI 98 (141)
Q Consensus 70 ~Cd~C~~~-~a~~~C~~d~~~-LC~~Cd~~~ 98 (141)
.|+.|... ...|.|..|.-+ ||..|-...
T Consensus 8 ~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 8 TCNECKHHVETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp EETTTTEEESSEEEESSSSSCEECHHHHHHH
T ss_pred ECCCCCCCCcceEEcCCCCCchhHHHHHhCC
Confidence 48888865 256889998655 999997664
No 34
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=53.79 E-value=27 Score=22.67 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCcccccCCCc---eEEEeeCCCc----ccchhhhhccccCCCCCCCeeEEEe
Q 032401 2 KLQCEVCEKAE---AEVLCCADEA----VLCSNCDVKVHTANKLSRKHQRFSL 47 (141)
Q Consensus 2 ~~~C~~C~~~~---A~~~C~~d~a----~LC~~CD~~~H~an~l~~~H~Rv~l 47 (141)
...||.|+..| -.+.|..+.. -||..|-...+..+.-...|.-.++
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i 73 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 73 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEe
Confidence 45799999765 3589998876 5999998654433333345776666
No 35
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.01 E-value=39 Score=22.19 Aligned_cols=26 Identities=27% Similarity=0.746 Sum_probs=15.9
Q ss_pred CCCcccccCCCceEEEeeCCCcccchhhhh
Q 032401 1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDV 30 (141)
Q Consensus 1 m~~~C~~C~~~~A~~~C~~d~a~LC~~CD~ 30 (141)
|...|-.|+..... ....+.|..|+.
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~ 26 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAK 26 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccc
Confidence 67778888764432 233445777765
No 36
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=45.18 E-value=12 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=23.4
Q ss_pred CCccccCC---cceEEEccCccccccc-cccc
Q 032401 69 PSCDICQE---RNGFFFCLEDRAILCR-QCDV 96 (141)
Q Consensus 69 ~~Cd~C~~---~~a~~~C~~d~~~LC~-~Cd~ 96 (141)
..|.+|.. .++.+.|..|.+..|. .|-.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k 43 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYR 43 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHHH
Confidence 46999985 7999999999999997 5544
No 37
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.66 E-value=23 Score=21.64 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=25.3
Q ss_pred CCCCCCccccCCcceEEEccCcccc-cccccccc
Q 032401 65 ASQLPSCDICQERNGFFFCLEDRAI-LCRQCDVS 97 (141)
Q Consensus 65 ~~~~~~Cd~C~~~~a~~~C~~d~~~-LC~~Cd~~ 97 (141)
..+...|.+|.+.+....-.-|... +|..|...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY 45 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc
Confidence 3445679999988887776778777 99999764
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.57 E-value=18 Score=21.82 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 63 PSASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 63 ~~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
........|.+|......-.-..|...+|..|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKG 44 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHH
Confidence 33445567999987655544456888899999654
No 39
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.24 E-value=11 Score=25.52 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=24.6
Q ss_pred CCCCccccCCc-------ceEEEccCccccccccccc
Q 032401 67 QLPSCDICQER-------NGFFFCLEDRAILCRQCDV 96 (141)
Q Consensus 67 ~~~~Cd~C~~~-------~a~~~C~~d~~~LC~~Cd~ 96 (141)
..+.|.+|++. ..++-|..|..++|+.|..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 34679999976 4777899999999999954
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.23 E-value=65 Score=19.37 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCCCCCccccCCc---ceEEEccCccccccccccccccCCCCCcCCCcceeeecccccccccCCCC
Q 032401 64 SASQLPSCDICQER---NGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALESSADNN 127 (141)
Q Consensus 64 ~~~~~~~Cd~C~~~---~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~~~~~~~~~~~ 127 (141)
.......|.+|... +..+.-..|...+|..|....-. ++..=|+.........+.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSCSCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCcccCCCC
Confidence 33445679999543 33444456888999999765321 223445555554444444443
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.05 E-value=31 Score=21.19 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCCCCCccccCCcceE----EEccCcccccccccccc
Q 032401 63 PSASQLPSCDICQERNGF----FFCLEDRAILCRQCDVS 97 (141)
Q Consensus 63 ~~~~~~~~Cd~C~~~~a~----~~C~~d~~~LC~~Cd~~ 97 (141)
....+...|.+|...... .+-..|...+|..|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~ 48 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEK 48 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHH
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHH
Confidence 334445679999876543 44456888889988654
No 42
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=32.26 E-value=17 Score=20.82 Aligned_cols=27 Identities=30% Similarity=0.742 Sum_probs=21.2
Q ss_pred CCcccccCCCceEEEeeCCCcccchhhhhccccC
Q 032401 2 KLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTA 35 (141)
Q Consensus 2 ~~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~a 35 (141)
+..|+.|++ .+| .++.|..|...+|..
T Consensus 14 pt~C~~C~~---~l~----qG~~C~~C~~~~H~~ 40 (52)
T 1faq_A 14 LAFCDICQK---FLL----NGFRCQTCGYKFHEH 40 (52)
T ss_dssp CEECTTSSS---EEC----SEEECTTTTCCBCST
T ss_pred CcCCCCccc---ccc----cCCEeCCCCCeEChh
Confidence 357899986 345 789999999999863
No 43
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.63 E-value=36 Score=20.90 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
.......|.+|......-+-..|...+|..|...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 44 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALE 44 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHH
Confidence 3344556999987654444467888888888644
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.08 E-value=36 Score=20.57 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
.......|.+|......-+-..|...+|..|...
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 48 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTA 48 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHH
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHH
Confidence 3444567999987654433457888899999654
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.07 E-value=25 Score=19.83 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
...+...|.+|......-+-..|...+|..|...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITR 44 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHH
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHH
Confidence 3344557999886544434457888899999654
No 46
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.24 E-value=43 Score=20.19 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 65 ASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 65 ~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
......|.+|......-+-..|...+|..|...
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITL 48 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHH
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHH
Confidence 344557999976543322356888999999654
No 47
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.94 E-value=36 Score=21.72 Aligned_cols=35 Identities=26% Similarity=0.638 Sum_probs=21.9
Q ss_pred CCCCccccCCcceEEEcc------------CccccccccccccccCCC
Q 032401 67 QLPSCDICQERNGFFFCL------------EDRAILCRQCDVSIHMAS 102 (141)
Q Consensus 67 ~~~~Cd~C~~~~a~~~C~------------~d~~~LC~~Cd~~~H~an 102 (141)
....|..|.+++ .++|. ...+++|..|+..-|..-
T Consensus 9 ~~~~c~~C~~~~-~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~C 55 (77)
T 2e6s_A 9 NDTECDLCGGDP-EKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYC 55 (77)
T ss_dssp CCCCCTTTCSCS-SSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTS
T ss_pred CCccChhhcCCC-CeECCCCCCcCcCCcCCCCCEEEcCCCCccccccc
Confidence 455677776544 34442 235778888888877653
No 48
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.93 E-value=27 Score=20.40 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCCCCCCccccCCcceE-------EEccCcccccccccccc
Q 032401 63 PSASQLPSCDICQERNGF-------FFCLEDRAILCRQCDVS 97 (141)
Q Consensus 63 ~~~~~~~~Cd~C~~~~a~-------~~C~~d~~~LC~~Cd~~ 97 (141)
........|.+|...... ++-..|...+|..|...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH
Confidence 344455679999876433 24567888899999654
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.08 E-value=1.1e+02 Score=17.43 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=20.1
Q ss_pred CCCccccCCcceEEEccCcccccccccccc
Q 032401 68 LPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
...|.+|......-.-..|...+|..|...
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSS
T ss_pred CCCceEeCCccCCeEEcCCCCcccHHHHcc
Confidence 345888876554444456788888888655
No 50
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.08 E-value=59 Score=22.03 Aligned_cols=18 Identities=17% Similarity=0.560 Sum_probs=14.2
Q ss_pred CCCCCccccCCcceEEEc
Q 032401 66 SQLPSCDICQERNGFFFC 83 (141)
Q Consensus 66 ~~~~~Cd~C~~~~a~~~C 83 (141)
.....|+.|+...|.||=
T Consensus 70 ~~~~~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQ 87 (113)
T ss_dssp BCCSCCSSSCCSCEEEEC
T ss_pred CcccCCCCCCCceEEEEE
Confidence 334679999999999884
No 51
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=22.53 E-value=44 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.380 Sum_probs=27.2
Q ss_pred CcccccCCCceEEEeeCCCcccchhhhhccccC
Q 032401 3 LQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTA 35 (141)
Q Consensus 3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~a 35 (141)
..|--|+.....|-..+=..++|..|-. +|+.
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~Csg-iHR~ 57 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCSG-SLRG 57 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHHH-HHTT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhccc-hhcc
Confidence 3688899888888888999999999985 8875
No 52
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.50 E-value=69 Score=18.84 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCCCCccccCCcceEEEccCccccccccccccc
Q 032401 65 ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSI 98 (141)
Q Consensus 65 ~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~ 98 (141)
......|.+|......-.-..|...+|..|....
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~ 50 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQI 50 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHH
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHH
Confidence 3445579999876555444589999999997653
No 53
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.27 E-value=62 Score=19.01 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCCCCCccccCCcceEEEccCcccccccccccc
Q 032401 65 ASQLPSCDICQERNGFFFCLEDRAILCRQCDVS 97 (141)
Q Consensus 65 ~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~ 97 (141)
......|.+|...... .-..|...+|..|...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~ 43 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDK 43 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHH
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHH
Confidence 3445579999887766 5567888899999664
No 54
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.83 E-value=27 Score=21.77 Aligned_cols=16 Identities=31% Similarity=1.080 Sum_probs=12.3
Q ss_pred ccccccccccccccCC
Q 032401 86 DRAILCRQCDVSIHMA 101 (141)
Q Consensus 86 d~~~LC~~Cd~~~H~a 101 (141)
..+++|..|+..-|..
T Consensus 31 ~~ll~CD~C~~~yH~~ 46 (70)
T 3asl_A 31 DKQLMCDECDMAFHIY 46 (70)
T ss_dssp GGEEECTTTCCEEEGG
T ss_pred CCEEEcCCCCCceecc
Confidence 4678888888887865
No 55
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=20.39 E-value=29 Score=22.00 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=24.2
Q ss_pred CCCcccccCCCceEEEeeCCCcccchhhhhcc
Q 032401 1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKV 32 (141)
Q Consensus 1 m~~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~ 32 (141)
|++.|..|.. .-+||=.+-...+|..|...+
T Consensus 6 m~VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEH-EQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCC-EEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCC-ceEEEecCceEEEcccCCCEE
Confidence 6778999985 677888888888888887544
No 56
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.20 E-value=78 Score=18.87 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=20.8
Q ss_pred CCCCccccCCcceEEEccCccccccccccccccCCC
Q 032401 67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMAS 102 (141)
Q Consensus 67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an 102 (141)
....|.+|...... ....+++|..|+...|..-
T Consensus 5 ~~~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~C 37 (66)
T 2yt5_A 5 SSGVCTICQEEYSE---APNEMVICDKCGQGYHQLC 37 (66)
T ss_dssp CCCCBSSSCCCCCB---TTBCEEECSSSCCEEETTT
T ss_pred CCCCCCCCCCCCCC---CCCCEEECCCCChHHHhhh
Confidence 34458888764111 2356777888888888654
No 57
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.10 E-value=23 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=12.7
Q ss_pred ccchhhhhccccCCCCCCCeeEE
Q 032401 23 VLCSNCDVKVHTANKLSRKHQRF 45 (141)
Q Consensus 23 ~LC~~CD~~~H~an~l~~~H~Rv 45 (141)
+.|..|+...-.. ..+.+|+|+
T Consensus 3 ~~C~~C~k~f~~~-~~l~~H~~~ 24 (26)
T 2lvu_A 3 YVCERCGKRFVQS-SQLANHIRH 24 (26)
Confidence 4577777655433 335677664
Done!