Query 032402
Match_columns 141
No_of_seqs 131 out of 175
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 13:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 4.2E-43 9.1E-48 277.3 12.3 119 21-140 26-159 (167)
2 PF14159 CAAD: CAAD domains of 100.0 5.2E-29 1.1E-33 179.4 8.2 81 59-140 3-84 (90)
3 PF14159 CAAD: CAAD domains of 88.5 0.86 1.9E-05 32.9 4.1 47 61-108 1-48 (90)
4 PF01810 LysE: LysE type trans 79.7 8.3 0.00018 29.3 6.4 37 96-132 48-85 (191)
5 PF12911 OppC_N: N-terminal TM 79.7 3.8 8.3E-05 25.8 3.9 27 63-89 4-30 (56)
6 PF11364 DUF3165: Protein of u 77.4 12 0.00027 27.1 6.3 52 81-132 29-80 (81)
7 PRK09304 arginine exporter pro 76.4 7.1 0.00015 30.8 5.3 48 79-126 39-89 (207)
8 PRK10323 cysteine/O-acetylseri 76.1 8.5 0.00018 30.1 5.6 49 79-127 44-93 (195)
9 PRK10958 leucine export protei 72.4 9.9 0.00021 30.2 5.2 34 93-126 63-96 (212)
10 PRK10229 threonine efflux syst 70.4 12 0.00026 29.1 5.2 46 81-126 43-91 (206)
11 PF06072 Herpes_US9: Alphaherp 70.4 20 0.00044 24.7 5.7 48 52-99 6-55 (60)
12 PRK10520 rhtB homoserine/homos 69.0 16 0.00035 28.4 5.7 36 92-127 58-93 (205)
13 PF11190 DUF2976: Protein of u 68.5 15 0.00033 26.7 5.0 72 52-127 7-82 (87)
14 TIGR00948 2a75 L-lysine export 68.2 17 0.00037 27.6 5.6 36 92-127 41-76 (177)
15 PF11351 DUF3154: Protein of u 66.7 20 0.00044 26.9 5.6 25 102-128 95-119 (123)
16 TIGR00949 2A76 The Resistance 65.4 19 0.00041 27.3 5.3 34 93-126 41-74 (185)
17 PF05251 UPF0197: Uncharacteri 62.6 7.6 0.00016 27.9 2.5 36 102-137 16-52 (77)
18 PF05552 TM_helix: Conserved T 53.0 27 0.00058 22.2 3.7 39 63-101 3-41 (53)
19 PF04418 DUF543: Domain of unk 51.4 19 0.00041 25.5 2.9 30 63-92 17-48 (75)
20 COG1280 RhtB Putative threonin 49.2 47 0.001 26.5 5.3 48 81-128 44-94 (208)
21 KOG4452 Predicted membrane pro 48.6 11 0.00025 27.0 1.5 34 102-135 18-52 (79)
22 PF11833 DUF3353: Protein of u 43.7 88 0.0019 25.4 6.1 59 59-124 74-135 (194)
23 PF10192 GpcrRhopsn4: Rhodopsi 43.6 44 0.00095 27.4 4.4 51 72-122 170-222 (257)
24 PF10958 DUF2759: Protein of u 43.5 66 0.0014 21.6 4.4 43 85-127 3-45 (52)
25 PF10031 DUF2273: Small integr 43.0 49 0.0011 21.6 3.7 31 66-99 2-33 (51)
26 TIGR03745 conj_TIGR03745 integ 41.6 80 0.0017 23.9 5.1 49 50-102 21-69 (104)
27 PF06522 B12D: NADH-ubiquinone 40.2 24 0.00051 24.3 2.0 19 112-130 15-33 (73)
28 PRK06012 flhA flagellar biosyn 34.9 49 0.0011 31.9 3.8 29 96-124 301-329 (697)
29 COG2076 EmrE Membrane transpor 34.3 1.6E+02 0.0036 22.0 5.8 64 58-132 13-84 (106)
30 PF01102 Glycophorin_A: Glycop 32.8 66 0.0014 24.6 3.6 20 112-131 78-97 (122)
31 PRK07193 fliF flagellar MS-rin 32.8 65 0.0014 30.1 4.2 31 58-88 6-39 (552)
32 PF06716 DUF1201: Protein of u 30.1 36 0.00077 22.9 1.5 19 114-132 24-42 (54)
33 PF13124 DUF3963: Protein of u 29.1 82 0.0018 20.0 2.9 19 73-91 21-39 (40)
34 PF08711 Med26: TFIIS helical 28.2 1E+02 0.0022 19.2 3.4 30 95-124 2-31 (53)
35 TIGR01399 hrcV type III secret 28.0 71 0.0015 30.9 3.7 28 97-124 283-310 (677)
36 PF10710 DUF2512: Protein of u 27.8 1.6E+02 0.0035 22.7 5.0 71 59-131 41-115 (136)
37 PF11833 DUF3353: Protein of u 27.8 2.3E+02 0.0051 22.9 6.2 33 74-106 138-170 (194)
38 PF11377 DUF3180: Protein of u 25.6 2.6E+02 0.0057 21.3 5.8 47 79-125 2-55 (138)
39 TIGR00766 ribonuclease, putati 25.5 1.6E+02 0.0034 23.8 4.9 42 59-102 65-110 (263)
40 PF07787 DUF1625: Protein of u 24.4 1.3E+02 0.0028 24.6 4.2 26 83-108 192-218 (248)
41 PLN00092 photosystem I reactio 24.2 2.2E+02 0.0048 22.5 5.2 16 1-16 1-16 (137)
42 PF13630 SdpI: SdpI/YhfL prote 24.0 1.8E+02 0.0039 18.8 4.2 9 65-74 20-28 (76)
43 cd00928 Cyt_c_Oxidase_VIIa Cyt 24.0 72 0.0016 21.5 2.1 16 109-124 38-53 (55)
44 COG1033 Predicted exporters of 22.9 2.3E+02 0.0049 27.7 6.0 35 105-139 255-290 (727)
45 COG4956 Integral membrane prot 22.8 4.4E+02 0.0096 23.9 7.4 48 82-129 85-134 (356)
46 KOG2536 MAM33, mitochondrial m 22.7 53 0.0012 28.5 1.7 33 107-139 223-259 (263)
47 PRK14013 hypothetical protein; 22.3 3E+02 0.0066 24.7 6.3 23 59-85 52-74 (338)
48 PF08606 Prp19: Prp19/Pso4-lik 21.9 82 0.0018 22.3 2.2 14 57-70 6-19 (70)
49 PF06295 DUF1043: Protein of u 21.9 87 0.0019 23.5 2.5 18 76-93 1-18 (128)
50 KOG1304 Amino acid transporter 21.9 2.2E+02 0.0049 26.3 5.5 73 60-132 161-235 (449)
51 PF10003 DUF2244: Integral mem 21.4 2.5E+02 0.0054 21.2 4.9 17 109-125 44-60 (140)
52 COG1766 fliF Flagellar basal b 20.8 1.4E+02 0.003 28.2 4.0 32 59-90 7-38 (545)
53 PRK12792 flhA flagellar biosyn 20.7 1.2E+02 0.0026 29.5 3.7 26 99-124 301-326 (694)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=4.2e-43 Score=277.32 Aligned_cols=119 Identities=34% Similarity=0.647 Sum_probs=110.6
Q ss_pred cccccCCCCCCCCch-----------hhhhhHhHHHHhcCCCCCCcc--h-hhHHHHHHHHhhhhccchhHHHHHHHHHH
Q 032402 21 SLFITLPKLPLSPLN-----------EKQNCLAIVAKASGESSESST--S-LTVFKSVQNVWDNSSEDRLGLIGLGFAGI 86 (141)
Q Consensus 21 ~~~~~~~~~p~~~~~-----------~~~~~~~v~~~as~e~~~~~~--~-~e~~~~lq~~Wd~~~e~k~~~~~l~~aai 86 (141)
+++.++|.||.|++. ||+..++|++||++|++++.. + +|++|++||+||+ +|||+++++++++++
T Consensus 26 ~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~-~EdK~av~~l~~aai 104 (167)
T PLN02777 26 PQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWDK-VEDKYAVSSLAFAGV 104 (167)
T ss_pred CccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHHHHhh-hcchhHHHHHHHHHH
Confidence 478889999877763 889999999999999887532 2 5999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh-HHHHhhhc
Q 032402 87 VALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE-WEKKIKES 140 (141)
Q Consensus 87 val~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~-l~~kik~~ 140 (141)
|++|++.+||+|||+|||+|++||||||||++||+||||+|++||| |++||++.
T Consensus 105 Val~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~l 159 (167)
T PLN02777 105 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDT 159 (167)
T ss_pred HHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999975
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.96 E-value=5.2e-29 Score=179.40 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh-HHHHh
Q 032402 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE-WEKKI 137 (141)
Q Consensus 59 e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~-l~~ki 137 (141)
++.+++++.|++ +......+++++++++++|++.++++|||+||++|++||+||+||++||+||||+|++||| |.+|+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 3 KLPEYWGEFFDK-YKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 455666666666 6666667778888899999999999999999999999999999999999999999999999 99999
Q ss_pred hhc
Q 032402 138 KES 140 (141)
Q Consensus 138 k~~ 140 (141)
++.
T Consensus 82 ~~~ 84 (90)
T PF14159_consen 82 QSL 84 (90)
T ss_pred HHH
Confidence 864
No 3
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=88.47 E-value=0.86 Score=32.89 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHH-HHhhccCCchhh
Q 032402 61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLI-TAIDKLPIIPNA 108 (141)
Q Consensus 61 ~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl-~AId~iPLlp~l 108 (141)
++++++.|++ .++++....++++++++.-+..-+. ..+|.|--+|-+
T Consensus 1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll 48 (90)
T PF14159_consen 1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLL 48 (90)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 3689999999 8999999999999988876666555 456767666643
No 4
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=79.73 E-value=8.3 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHh-hccCCchhhHHHHHHHHHhhhhhhhhhcccchh
Q 032402 96 ITAI-DKLPIIPNALELIGILFSTVSVIEIIIWHGCCE 132 (141)
Q Consensus 96 l~AI-d~iPLlp~llELVGigYt~WFvyRyLl~~~~R~ 132 (141)
++++ +..|.+-..++++|-.|..|+.|+.+..+.+.+
T Consensus 48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 3444 669999999999999999999999987555444
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=79.71 E-value=3.8 Score=25.82 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHH
Q 032402 63 SVQNVWDNSSEDRLGLIGLGFAGIVAL 89 (141)
Q Consensus 63 ~lq~~Wd~~~e~k~~~~~l~~aaival 89 (141)
..|+.|.+|..||.+++|+++-+++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 468899999999999988765544443
No 6
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=77.38 E-value=12 Score=27.12 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh
Q 032402 81 LGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE 132 (141)
Q Consensus 81 l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~ 132 (141)
+++.+++++-+..++++.+.-.-+-|.+|--+|....++|.+|.+.+=++|+
T Consensus 29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 5666777777888999999988899999999999999999999998776653
No 7
>PRK09304 arginine exporter protein; Provisional
Probab=76.45 E-value=7.1 Score=30.77 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhhccCCchhhHHHHHHHHHhhhhhhhhh
Q 032402 79 IGLGFAGIVALWASV---NLITAIDKLPIIPNALELIGILFSTVSVIEIII 126 (141)
Q Consensus 79 ~~l~~aaival~~~~---~vl~AId~iPLlp~llELVGigYt~WFvyRyLl 126 (141)
.+++++....+|... ++-.-++..|.+=.++.++|-.|..|..||-+-
T Consensus 39 ~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 39 IALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455443 333347899999999999999999999998764
No 8
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=76.09 E-value=8.5 Score=30.12 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhccCCchhhHHHHHHHHHhhhhhhhhhc
Q 032402 79 IGLGFAGIVALWASVNLI-TAIDKLPIIPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 79 ~~l~~aaival~~~~~vl-~AId~iPLlp~llELVGigYt~WFvyRyLl~ 127 (141)
.|...|-.+-..+..+.+ .-++..|.+=.++.++|..|..|..||-+-.
T Consensus 44 ~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 44 AGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444433333444 3366889999999999999999999997743
No 9
>PRK10958 leucine export protein LeuE; Provisional
Probab=72.37 E-value=9.9 Score=30.21 Aligned_cols=34 Identities=9% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhh
Q 032402 93 VNLITAIDKLPIIPNALELIGILFSTVSVIEIII 126 (141)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl 126 (141)
.++-.-++..|.+-..++++|..|..|+.||-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778999999999999999999998663
No 10
>PRK10229 threonine efflux system; Provisional
Probab=70.40 E-value=12 Score=29.09 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH---HHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhh
Q 032402 81 LGFAGIVALWAS---VNLITAIDKLPIIPNALELIGILFSTVSVIEIII 126 (141)
Q Consensus 81 l~~aaival~~~---~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl 126 (141)
+|+..-..+|.. .++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 43 ~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 43 LGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 3555566888999999999999999999998775
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=70.37 E-value=20 Score=24.72 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=27.7
Q ss_pred CCCcchhhHHHHHHHHhhhhccchh-HH-HHHHHHHHHHHHHHHHHHHHh
Q 032402 52 SESSTSLTVFKSVQNVWDNSSEDRL-GL-IGLGFAGIVALWASVNLITAI 99 (141)
Q Consensus 52 ~~~~~~~e~~~~lq~~Wd~~~e~k~-~~-~~l~~aaival~~~~~vl~AI 99 (141)
|+..|.+||+..+...=.+.-..|. .. ...++++++++-++++.++++
T Consensus 6 SDnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 6 SDNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred cccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999654323112222 22 234455555677788888776
No 12
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=68.95 E-value=16 Score=28.42 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhc
Q 032402 92 SVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 92 ~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~ 127 (141)
..++-.-++..|.+=.+++++|-.|..|..+|-+-.
T Consensus 58 ~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 58 GVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555678899999999999999999999997754
No 13
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=68.51 E-value=15 Score=26.71 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=49.6
Q ss_pred CCCcchhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhhHHHHHHHHHhhhhhhhhhc
Q 032402 52 SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLP----IIPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 52 ~~~~~~~e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iP----Llp~llELVGigYt~WFvyRyLl~ 127 (141)
|++..+..+.+.+|+- ..|-..+++++++++..+++..+.++.-|++- =-..+-..+.+|...-++.=||+.
T Consensus 7 Ps~g~~~~~~~~i~~y----~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl~ 82 (87)
T PF11190_consen 7 PSSGGGGGIMETIKGY----AKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLLT 82 (87)
T ss_pred CCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333455777777776 56778889999999999999999999988774 334455555555555444444443
No 14
>TIGR00948 2a75 L-lysine exporter.
Probab=68.15 E-value=17 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhc
Q 032402 92 SVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 92 ~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~ 127 (141)
..++-..++..|.+=..+.++|-.|..|..||-+-.
T Consensus 41 ~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 41 VFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567899999999999999999999988754
No 15
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.72 E-value=20 Score=26.90 Aligned_cols=25 Identities=12% Similarity=-0.130 Sum_probs=20.5
Q ss_pred cCCchhhHHHHHHHHHhhhhhhhhhcc
Q 032402 102 LPIIPNALELIGILFSTVSVIEIIIWH 128 (141)
Q Consensus 102 iPLlp~llELVGigYt~WFvyRyLl~~ 128 (141)
+| .++..|.|+|++++|+.|..-|.
T Consensus 95 vp--e~lw~Llg~~vlgy~~~Rs~eK~ 119 (123)
T PF11351_consen 95 VP--EPLWWLLGAGVLGYFGARSQEKR 119 (123)
T ss_pred CC--HHHHHHHHHHHhhhHHHhhHHHH
Confidence 55 47889999999999999976543
No 16
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=65.45 E-value=19 Score=27.32 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhh
Q 032402 93 VNLITAIDKLPIIPNALELIGILFSTVSVIEIII 126 (141)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl 126 (141)
.++-.-++..|.+-..+.++|-.|..|+.||-+-
T Consensus 41 ~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 41 LGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999999999999998664
No 17
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=62.65 E-value=7.6 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=26.6
Q ss_pred cCCchhhHHHHHHHHHhhhhhhhhhcccc-hhHHHHh
Q 032402 102 LPIIPNALELIGILFSTVSVIEIIIWHGC-CEWEKKI 137 (141)
Q Consensus 102 iPLlp~llELVGigYt~WFvyRyLl~~~~-R~l~~ki 137 (141)
.|.+.-+|=.+|+.+++||........+. |.+.+++
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl 52 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKEL 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHH
Confidence 35666678889999999999888775544 4366654
No 18
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=53.01 E-value=27 Score=22.21 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032402 63 SVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDK 101 (141)
Q Consensus 63 ~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~ 101 (141)
.+++.|+++.+.-+.+++-++-.+++.|++..+-+.+++
T Consensus 3 ~~~~~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~ 41 (53)
T PF05552_consen 3 PLSGMLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVRR 41 (53)
T ss_dssp ----------GGHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776666666666666666666666666555543
No 19
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=51.43 E-value=19 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHhhhhccc--hhHHHHHHHHHHHHHHHH
Q 032402 63 SVQNVWDNSSED--RLGLIGLGFAGIVALWAS 92 (141)
Q Consensus 63 ~lq~~Wd~~~e~--k~~~~~l~~aaival~~~ 92 (141)
.+.++||.-.+| +....|+++|++.++++.
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~f 48 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 789999997777 445567777777777654
No 20
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=49.19 E-value=47 Score=26.46 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHH---HHhhccCCchhhHHHHHHHHHhhhhhhhhhcc
Q 032402 81 LGFAGIVALWASVNLI---TAIDKLPIIPNALELIGILFSTVSVIEIIIWH 128 (141)
Q Consensus 81 l~~aaival~~~~~vl---~AId~iPLlp~llELVGigYt~WFvyRyLl~~ 128 (141)
+|......+|+..+.+ .-+..-|.+-.++.++|-.|-.|..|+-+..+
T Consensus 44 ~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 44 LGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333334444444444 56888999999999999999999999977754
No 21
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=48.56 E-value=11 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=24.3
Q ss_pred cCCchhhHHHHHHHHHhhhhhhhh-hcccchhHHH
Q 032402 102 LPIIPNALELIGILFSTVSVIEII-IWHGCCEWEK 135 (141)
Q Consensus 102 iPLlp~llELVGigYt~WFvyRyL-l~~~~R~l~~ 135 (141)
.|.+..++--||+.++.||..--. -.|.+|.+.+
T Consensus 18 fPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~K 52 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLK 52 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHH
Confidence 688888899999999999864332 3455666433
No 22
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=43.74 E-value=88 Score=25.39 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=39.1
Q ss_pred hHHHHHHHH---hhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 59 TVFKSVQNV---WDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 59 e~~~~lq~~---Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRy 124 (141)
....++|.. ||. .+..-...-.++.+++++|.... .-+=.|++.=-+|++.+.||.+|.
T Consensus 74 ~~p~wl~~~~~~~~~-P~~~~l~~~~~~f~~L~~~~~~~------~~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 74 PSPPWLQRLLPSFDT-PSSQDLLIRAAAFGALGLWSLLF------PAASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred ccchHHHhcccceeC-CCcchHHHHHHHHHHHHHHHHHH------cCCCCcchHHHHHHHHHHHHHHHh
Confidence 444455554 888 66666666666667777776554 133344555568999999999986
No 23
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=43.60 E-value=44 Score=27.36 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=41.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHh--hccCCchhhHHHHHHHHHhhhhh
Q 032402 72 SEDRLGLIGLGFAGIVALWASVNLITAI--DKLPIIPNALELIGILFSTVSVI 122 (141)
Q Consensus 72 ~e~k~~~~~l~~aaival~~~~~vl~AI--d~iPLlp~llELVGigYt~WFvy 122 (141)
+|..++.+.+++=.+.++|...+.-.++ .+=|.--.++-.-|++++.||.+
T Consensus 170 y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~ 222 (257)
T PF10192_consen 170 YDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLS 222 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666777889899999988 88898899999999999999985
No 24
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=43.49 E-value=66 Score=21.63 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhc
Q 032402 85 GIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 85 aival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~ 127 (141)
++|++-..-+++.++.+=-+++-+|-++-+..-|||...-++.
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii~ 45 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTIIH 45 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778899999999999999999999999998876654
No 25
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=42.97 E-value=49 Score=21.64 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHhhhhccchhHHHHHHHHHHHH-HHHHHHHHHHh
Q 032402 66 NVWDNSSEDRLGLIGLGFAGIVA-LWASVNLITAI 99 (141)
Q Consensus 66 ~~Wd~~~e~k~~~~~l~~aaiva-l~~~~~vl~AI 99 (141)
|.|++ ++..+++.++|.+++ +++..+.-.++
T Consensus 2 e~~~~---~~~~iiG~~~G~ila~l~l~~GF~~tl 33 (51)
T PF10031_consen 2 EFWKN---HRGKIIGGLIGLILALLILTFGFWKTL 33 (51)
T ss_pred hHHHH---CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 566777777777777 46777776665
No 26
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=41.63 E-value=80 Score=23.90 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCCcchhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032402 50 ESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKL 102 (141)
Q Consensus 50 e~~~~~~~~e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~i 102 (141)
|.+++.....+.+.+|+- ..|-..+++++++++..+++..+.+.+-+++
T Consensus 21 e~PS~G~g~g~~~tik~Y----~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 21 EAPSRGGGSGIMQTIKNY----GYDGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CCCCCCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334688888887 5667888999999999999999988887765
No 27
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=40.17 E-value=24 Score=24.30 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhhhhhcccc
Q 032402 112 IGILFSTVSVIEIIIWHGC 130 (141)
Q Consensus 112 VGigYt~WFvyRyLl~~~~ 130 (141)
+|++..+++.+|+|+..++
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3455667999999976654
No 28
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=34.87 E-value=49 Score=31.94 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHhhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 96 ITAIDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 96 l~AId~iPLlp~llELVGigYt~WFvyRy 124 (141)
++-|-..|.+|=++=-+++++.+|+.+|.
T Consensus 301 ~~liPG~P~~~fl~la~~~~~~~~~~~~~ 329 (697)
T PRK06012 301 LGLVPGMPHLPFLLLAGLLGFLAYRLRKR 329 (697)
T ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666678889998775
No 29
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=34.27 E-value=1.6e+02 Score=22.03 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhh--------hhhhhhccc
Q 032402 58 LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVS--------VIEIIIWHG 129 (141)
Q Consensus 58 ~e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WF--------vyRyLl~~~ 129 (141)
.|++-...-||.+-..++...+..+++..++.+..+- |++++| +|+.|..|- ..-+++|+|
T Consensus 13 ~EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~---alk~ip--------vgvAYAiW~GiG~v~~~l~g~~~f~E 81 (106)
T COG2076 13 LEVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSL---ALKTIP--------LGVAYAIWTGIGIVGTALVGVLLFGE 81 (106)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---HHhhCc--------hHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3777777777777333444445555566666665544 666677 477777774 345566666
Q ss_pred chh
Q 032402 130 CCE 132 (141)
Q Consensus 130 ~R~ 132 (141)
..+
T Consensus 82 ~l~ 84 (106)
T COG2076 82 SLS 84 (106)
T ss_pred cCC
Confidence 544
No 30
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.79 E-value=66 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHhhhhhhhhhcccch
Q 032402 112 IGILFSTVSVIEIIIWHGCC 131 (141)
Q Consensus 112 VGigYt~WFvyRyLl~~~~R 131 (141)
||++..++|..|.+-+|...
T Consensus 78 Ig~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 34445667777888887644
No 31
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=32.76 E-value=65 Score=30.15 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=19.4
Q ss_pred hhHHHHHHHHhhhhc---cchhHHHHHHHHHHHH
Q 032402 58 LTVFKSVQNVWDNSS---EDRLGLIGLGFAGIVA 88 (141)
Q Consensus 58 ~e~~~~lq~~Wd~~~---e~k~~~~~l~~aaiva 88 (141)
.++++.+++.|.++. ..|..+++.+++++++
T Consensus 6 ~~~~~~l~~~w~~l~~l~~~r~~~l~~~~~~~va 39 (552)
T PRK07193 6 NDMLDKLKQKWSPFQLLRGNRKLILLALLALLVA 39 (552)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHH
Confidence 478999999999942 2344444444444444
No 32
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=30.12 E-value=36 Score=22.86 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHHHhhhhhhhhhcccchh
Q 032402 114 ILFSTVSVIEIIIWHGCCE 132 (141)
Q Consensus 114 igYt~WFvyRyLl~~~~R~ 132 (141)
+.|-.||+|+.++|..+-+
T Consensus 24 ~~~F~~F~~Kqilfr~~~~ 42 (54)
T PF06716_consen 24 LVVFIWFVYKQILFRNNPQ 42 (54)
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 4578899999999876654
No 33
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=29.11 E-value=82 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 032402 73 EDRLGLIGLGFAGIVALWA 91 (141)
Q Consensus 73 e~k~~~~~l~~aaival~~ 91 (141)
.|.--..++.+.++|++|+
T Consensus 21 rnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 21 RNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3455557788888999995
No 34
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=28.25 E-value=1e+02 Score=19.24 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.8
Q ss_pred HHHHhhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 95 LITAIDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 95 vl~AId~iPLlp~llELVGigYt~WFvyRy 124 (141)
+++.++++|+=...|+=.|||-+.-+..++
T Consensus 2 iL~~L~~l~it~~~L~~T~IGk~V~~l~k~ 31 (53)
T PF08711_consen 2 ILKVLEKLPITVELLKSTGIGKAVNKLRKH 31 (53)
T ss_dssp HHHHHHCSS-SHHHHHHHSHHHHHHHHHHC
T ss_pred HHHHhhcCCCCHHHHHhCChhHHHHHHHcC
Confidence 578899999999999999999999999998
No 35
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=27.96 E-value=71 Score=30.93 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=17.5
Q ss_pred HHhhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 97 TAIDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 97 ~AId~iPLlp~llELVGigYt~WFvyRy 124 (141)
+-+-.+|.+|=++=-+++++.+|+.+|.
T Consensus 283 ~lvPG~P~~~fl~la~~l~~~~~~~~~~ 310 (677)
T TIGR01399 283 ALIPGFPLLVFALLAVLLAAAGYLLSRR 310 (677)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555667888988774
No 36
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=27.85 E-value=1.6e+02 Score=22.68 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=50.4
Q ss_pred hHHHH-HHHHh--hhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHhhhhhhhhhcccch
Q 032402 59 TVFKS-VQNVW--DNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTVSVIEIIIWHGCC 131 (141)
Q Consensus 59 e~~~~-lq~~W--d~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPL-lp~llELVGigYt~WFvyRyLl~~~~R 131 (141)
.++.+ +.+.| .+ +.|..+.++=++.+.+.+|+....... +..+. ...++=-+.++..=||.=||+.+..-+
T Consensus 41 tvvaY~iGDl~ILPr-~gN~~AtiaD~~La~~~iW~~~~~~~~-~~~~~~~~allsA~~i~v~E~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 41 TVVAYLIGDLFILPR-TGNIVATIADFGLAFLVIWLMGYILTG-NYVSIAWAALLSAVLIGVGEYFFHRYLLRNVLR 115 (136)
T ss_pred HHHHHHHHHHheeeC-CCChhHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555 34443 34 567778888778888999999998877 44544 444566678888889999999876544
No 37
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=27.82 E-value=2.3e+02 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 032402 74 DRLGLIGLGFAGIVALWASVNLITAIDKLPIIP 106 (141)
Q Consensus 74 ~k~~~~~l~~aaival~~~~~vl~AId~iPLlp 106 (141)
+....+++++++++.-|+.++++...-..+.+|
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 344558889999999999999998776665555
No 38
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=25.56 E-value=2.6e+02 Score=21.32 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hccCCchhhHH------HHHHHHHhhhhhhhh
Q 032402 79 IGLGFAGIVALWASVNLITAI-DKLPIIPNALE------LIGILFSTVSVIEII 125 (141)
Q Consensus 79 ~~l~~aaival~~~~~vl~AI-d~iPLlp~llE------LVGigYt~WFvyRyL 125 (141)
+..++.+.++-|+...+...- +.+|-+|-..= -+...|.+|-+.||.
T Consensus 2 v~~~~~~a~~~~~l~~~~~~~g~~lp~~p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 2 VAAAVVGAVAGWLLLQLLESYGGSLPPIPWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777788 88888775422 245678999999999
No 39
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=25.54 E-value=1.6e+02 Score=23.84 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=20.8
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH----HHHHHhhcc
Q 032402 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASV----NLITAIDKL 102 (141)
Q Consensus 59 e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~----~vl~AId~i 102 (141)
|..+.+++..+++.++...+ .+++.++++|.++ ++-.++|++
T Consensus 65 ~~~~~v~~~l~~~~~~~~~l--~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 65 ALAQTLKNTMNTAVDARTTV--GLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666533332222 3345556666544 444556655
No 40
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=24.41 E-value=1.3e+02 Score=24.58 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCchhh
Q 032402 83 FAGIVALWASVNLITA-IDKLPIIPNA 108 (141)
Q Consensus 83 ~aaival~~~~~vl~A-Id~iPLlp~l 108 (141)
+..++++.+....+.. +|-+|++..+
T Consensus 192 llmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 192 LLMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhceeech
Confidence 3344456677777766 4889998873
No 41
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=24.24 E-value=2.2e+02 Score=22.52 Aligned_cols=16 Identities=50% Similarity=0.675 Sum_probs=12.5
Q ss_pred CccccccCCCcccccc
Q 032402 1 MASITACLPSPLLVQG 16 (141)
Q Consensus 1 mas~~a~~~~~~l~~~ 16 (141)
||+|.|+.+-+++.+.
T Consensus 1 MAtitas~~t~~~~ra 16 (137)
T PLN00092 1 MATITASTPTTSLVRA 16 (137)
T ss_pred CceEeccCccccchhh
Confidence 8998888887776655
No 42
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.03 E-value=1.8e+02 Score=18.83 Aligned_cols=9 Identities=11% Similarity=0.604 Sum_probs=5.2
Q ss_pred HHHhhhhccc
Q 032402 65 QNVWDNSSED 74 (141)
Q Consensus 65 q~~Wd~~~e~ 74 (141)
+|.|++ ..+
T Consensus 20 ~~~W~~-a~r 28 (76)
T PF13630_consen 20 DENWKK-AHR 28 (76)
T ss_pred HHHHHH-HHH
Confidence 456777 444
No 43
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=24.01 E-value=72 Score=21.51 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhhhh
Q 032402 109 LELIGILFSTVSVIEI 124 (141)
Q Consensus 109 lELVGigYt~WFvyRy 124 (141)
|=++|++|+.++.|.+
T Consensus 38 L~~vG~~~~~~~l~~~ 53 (55)
T cd00928 38 LTVVGTGYSLYLLYML 53 (55)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4568999999888865
No 44
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=22.94 E-value=2.3e+02 Score=27.74 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHhhhhhhhhhcccchh-HHHHhhh
Q 032402 105 IPNALELIGILFSTVSVIEIIIWHGCCE-WEKKIKE 139 (141)
Q Consensus 105 lp~llELVGigYt~WFvyRyLl~~~~R~-l~~kik~ 139 (141)
.|.++=-+|+-|...|.-||.-...++| -.+-+++
T Consensus 255 ~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ 290 (727)
T COG1033 255 VPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVE 290 (727)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 5677888999999999999998777765 4444443
No 45
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.84 E-value=4.4e+02 Score=23.89 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHh--hccCCchhhHHHHHHHHHhhhhhhhhhccc
Q 032402 82 GFAGIVALWASVNLITAI--DKLPIIPNALELIGILFSTVSVIEIIIWHG 129 (141)
Q Consensus 82 ~~aaival~~~~~vl~AI--d~iPLlp~llELVGigYt~WFvyRyLl~~~ 129 (141)
.+|.++++-++.-+...+ -.+|++..++-.++-...++|.+++-.++.
T Consensus 85 tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 85 TIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhh
Confidence 344444544444444433 357889999999999999999998766543
No 46
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=22.74 E-value=53 Score=28.46 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHh-hhhhhhhhcccchh---HHHHhhh
Q 032402 107 NALELIGILFST-VSVIEIIIWHGCCE---WEKKIKE 139 (141)
Q Consensus 107 ~llELVGigYt~-WFvyRyLl~~~~R~---l~~kik~ 139 (141)
..||.=||-=+. -|...|+.+|++|+ |++++|+
T Consensus 223 ~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK~ 259 (263)
T KOG2536|consen 223 RFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVKS 259 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 367777776543 79999999999999 7787775
No 47
>PRK14013 hypothetical protein; Provisional
Probab=22.32 E-value=3e+02 Score=24.66 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=17.4
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHH
Q 032402 59 TVFKSVQNVWDNSSEDRLGLIGLGFAG 85 (141)
Q Consensus 59 e~~~~lq~~Wd~~~e~k~~~~~l~~aa 85 (141)
.+++++.++|++ +....|+.+|.
T Consensus 52 ~vl~~m~~~wq~----~fl~~Gi~iAv 74 (338)
T PRK14013 52 TVLKRMSPKWQK----RFLTWGILIAV 74 (338)
T ss_pred HHHhhCCHHHHH----HHHHHHHHHHH
Confidence 677788888877 66777777776
No 48
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.94 E-value=82 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHhhh
Q 032402 57 SLTVFKSVQNVWDN 70 (141)
Q Consensus 57 ~~e~~~~lq~~Wd~ 70 (141)
-..+++.+|+.||.
T Consensus 6 IP~lL~~lQnEWDa 19 (70)
T PF08606_consen 6 IPSLLSTLQNEWDA 19 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999998
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.93 E-value=87 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032402 76 LGLIGLGFAGIVALWASV 93 (141)
Q Consensus 76 ~~~~~l~~aaival~~~~ 93 (141)
|+++++++|.||+.++.-
T Consensus 1 y~~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGR 18 (128)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 467777777777766543
No 50
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=21.90 E-value=2.2e+02 Score=26.28 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH--HHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh
Q 032402 60 VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNL--ITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE 132 (141)
Q Consensus 60 ~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~v--l~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~ 132 (141)
+.+++|+.||...........++...++.+-..+-+ +..+--+-++..++-++|+.++..+..+++..-++|.
T Consensus 161 va~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~ 235 (449)
T KOG1304|consen 161 VATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLP 235 (449)
T ss_pred HHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 457789999942445555555555555544332222 3344445577888999999999999999999888887
No 51
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=21.37 E-value=2.5e+02 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhhhh
Q 032402 109 LELIGILFSTVSVIEII 125 (141)
Q Consensus 109 lELVGigYt~WFvyRyL 125 (141)
+|+.+++|..+-.||.-
T Consensus 44 lev~~l~~a~~~~~r~~ 60 (140)
T PF10003_consen 44 LEVLALWYAFRRNYRHA 60 (140)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 69999999998888854
No 52
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=20.82 E-value=1.4e+02 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 032402 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALW 90 (141)
Q Consensus 59 e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~ 90 (141)
.+.+.+++.|.++...+..+++.+++++|++-
T Consensus 7 ~~~~k~~~~~~~~~~~~ki~l~~~~~~~v~~~ 38 (545)
T COG1766 7 QLLKKLKEFWGKLTKKQKIVLLGAGAALVAVL 38 (545)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 57888999999977777777666666666543
No 53
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=20.70 E-value=1.2e+02 Score=29.52 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=15.4
Q ss_pred hhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 99 IDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 99 Id~iPLlp~llELVGigYt~WFvyRy 124 (141)
|=.+|.+|=++=-+++++.+|+.+|.
T Consensus 301 iPG~P~~~Fl~la~~~~~~~~~~~~~ 326 (694)
T PRK12792 301 VPGLPFLPFALLGGVMAFVAYTIPRR 326 (694)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444568889998774
Done!