Query 032402
Match_columns 141
No_of_seqs 131 out of 175
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ors_C Potassium channel; volt 37.0 1.1E+02 0.0036 21.5 6.4 47 81-127 10-57 (132)
2 2kyh_A KVAP, voltage-gated pot 34.0 1.3E+02 0.0043 21.9 6.4 58 66-126 13-71 (147)
3 2lyd_B Pacman protein; DCP1, X 21.9 55 0.0019 19.7 2.0 24 10-35 4-27 (38)
4 2knc_B Integrin beta-3; transm 16.1 88 0.003 21.0 2.3 25 113-137 23-47 (79)
5 2r9r_B Paddle chimera voltage 11.2 4.3E+02 0.015 22.7 5.8 23 105-127 237-259 (514)
6 3nd0_A SLL0855 protein; CLC fa 10.6 3.6E+02 0.012 23.0 5.0 29 59-88 15-43 (466)
7 3g80_A Protein B2; RNA-binding 10.2 2.7E+02 0.0093 19.8 3.5 28 57-104 26-53 (97)
8 2kfe_A Meucin-24; alpha-helix, 10.1 1.2E+02 0.004 17.0 1.2 18 58-76 4-21 (26)
9 3ci9_A Heat shock factor-bindi 9.9 3E+02 0.01 17.0 3.2 12 59-70 13-24 (48)
10 1v54_J Cytochrome C oxidase po 9.1 1.5E+02 0.0053 18.9 1.7 13 111-123 40-52 (59)
No 1
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=36.96 E-value=1.1e+02 Score=21.46 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHhhhhhhhhhc
Q 032402 81 LGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 81 l~~aaival~~~~~vl~AId~iPL-lp~llELVGigYt~WFvyRyLl~ 127 (141)
+...+++.+-+...++++.+.++- ....++.+-...++||+.-|+++
T Consensus 10 ~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 10 LGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555556666655542 46678899999999999999884
No 2
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=34.03 E-value=1.3e+02 Score=21.87 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHhhhhhhhhh
Q 032402 66 NVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTVSVIEIII 126 (141)
Q Consensus 66 ~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPL-lp~llELVGigYt~WFvyRyLl 126 (141)
.-|+- .|++.-=..+ .+++.+.+..-++++...++- ..+.++.+-....+||+.-|++
T Consensus 13 ~~~~~-~e~~~f~~~i--~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~l 71 (147)
T 2kyh_A 13 NIGDV-MEHPLVELGV--SYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAY 71 (147)
T ss_dssp HHHHH-HTCHHHHHHH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCchHHHHH--HHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 7776532222 223334445555666655542 3457888888888899888876
No 3
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=21.90 E-value=55 Score=19.71 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=19.2
Q ss_pred CcccccccccccccccCCCCCCCCch
Q 032402 10 SPLLVQGRQKLSLFITLPKLPLSPLN 35 (141)
Q Consensus 10 ~~~l~~~r~~~~~~~~~~~~p~~~~~ 35 (141)
+|++...|.| .++..|+||-|++.
T Consensus 4 ~p~l~qq~ap--~p~qmp~lp~pplf 27 (38)
T 2lyd_B 4 DPLLQQQRAP--FPGQMPNLPKPPLF 27 (38)
T ss_dssp CCSSCSSCCC--CTTCCCCCCCCCHH
T ss_pred CccchhhcCC--CcccccCCCCCchH
Confidence 5677777885 78889999988875
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.07 E-value=88 Score=21.01 Aligned_cols=25 Identities=12% Similarity=-0.064 Sum_probs=15.6
Q ss_pred HHHHHhhhhhhhhhcccchhHHHHh
Q 032402 113 GILFSTVSVIEIIIWHGCCEWEKKI 137 (141)
Q Consensus 113 GigYt~WFvyRyLl~~~~R~l~~ki 137 (141)
.+|-..+.+||.++.-.||+-.+|+
T Consensus 23 liGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888888776666633333
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=11.20 E-value=4.3e+02 Score=22.66 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHhhhhhhhhhc
Q 032402 105 IPNALELIGILFSTVSVIEIIIW 127 (141)
Q Consensus 105 lp~llELVGigYt~WFvyRyLl~ 127 (141)
....++.+-...++||+.-|+++
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR 259 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVR 259 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999999988874
No 6
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=10.59 E-value=3.6e+02 Score=23.02 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=9.3
Q ss_pred hHHHHHHHHhhhhccchhHHHHHHHHHHHH
Q 032402 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVA 88 (141)
Q Consensus 59 e~~~~lq~~Wd~~~e~k~~~~~l~~aaiva 88 (141)
++.+++.+.+++ .+-+..+.++++|.+++
T Consensus 15 ~~~~~~~~~~~~-~~~~l~l~~~liGi~~G 43 (466)
T 3nd0_A 15 KLPRNLTDSARS-LHPRTLVAAIVVGLITG 43 (466)
T ss_dssp -----------C-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 555566666555 44455555555554444
No 7
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=10.24 E-value=2.7e+02 Score=19.78 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 032402 57 SLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI 104 (141)
Q Consensus 57 ~~e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPL 104 (141)
..|+++.+..+-++ +.-.++.||+.+|.
T Consensus 26 ~yeLIq~lP~~l~q--------------------v~q~~v~ai~sl~~ 53 (97)
T 3g80_A 26 AYELIKSLPAKLEQ--------------------LAQETQATIQTLMI 53 (97)
T ss_dssp HHHHHHTHHHHHHH--------------------HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHHHHhccc
Confidence 57999999988888 67788889999985
No 8
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=10.09 E-value=1.2e+02 Score=17.01 Aligned_cols=18 Identities=0% Similarity=0.215 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhhhhccchh
Q 032402 58 LTVFKSVQNVWDNSSEDRL 76 (141)
Q Consensus 58 ~e~~~~lq~~Wd~~~e~k~ 76 (141)
.||.+.++++..+ ..||.
T Consensus 4 kei~~kiK~kl~~-akdK~ 21 (26)
T 2kfe_A 4 REFMSNLKEKLSG-VKEKM 21 (26)
T ss_dssp HHHHHHHHHHHHH-HHHHT
T ss_pred hHHHHHHHHHHHH-HHHHH
Confidence 4889999999888 76653
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=9.87 E-value=3e+02 Score=17.00 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=9.2
Q ss_pred hHHHHHHHHhhh
Q 032402 59 TVFKSVQNVWDN 70 (141)
Q Consensus 59 e~~~~lq~~Wd~ 70 (141)
.++.++|++|+.
T Consensus 13 ~LL~qmq~kFq~ 24 (48)
T 3ci9_A 13 TLLQQMQDKFQT 24 (48)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777888877
No 10
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=9.12 E-value=1.5e+02 Score=18.93 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhhh
Q 032402 111 LIGILFSTVSVIE 123 (141)
Q Consensus 111 LVGigYt~WFvyR 123 (141)
++|++|+.++.+.
T Consensus 40 ~~g~~~~~y~l~~ 52 (59)
T 1v54_J 40 LGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578888777664
Done!