Query 032402
Match_columns 141
No_of_seqs 131 out of 175
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 22:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032402.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032402hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54j_ f.23.4.1 (J:) Mitochon 43.2 12 0.00087 23.0 3.4 49 61-124 5-53 (58)
2 d2zjre1 d.141.1.1 (E:83-172) R 18.2 4.7 0.00034 26.6 -2.1 12 108-119 4-15 (90)
3 d2j01h2 d.141.1.1 (H:83-171) R 16.1 5.1 0.00037 26.4 -2.4 14 108-121 4-17 (89)
4 d1rl6a2 d.141.1.1 (A:82-170) R 16.1 5.4 0.00039 26.2 -2.3 11 108-118 4-14 (89)
5 d1i5pa3 f.1.3.1 (A:1-263) delt 15.6 52 0.0038 24.5 3.2 52 58-117 32-83 (263)
6 d2qamg2 d.141.1.1 (G:82-176) R 13.6 6.7 0.00049 26.1 -2.3 14 108-121 4-17 (95)
7 d2prra1 a.152.1.3 (A:5-194) Un 10.7 2E+02 0.015 18.8 5.0 34 92-125 50-85 (190)
8 d2gmya1 a.152.1.3 (A:2-148) Hy 9.2 1.4E+02 0.01 19.0 3.4 14 57-70 103-116 (147)
9 d1i27a_ a.4.5.30 (A:) C-termin 8.4 52 0.0038 20.9 0.8 20 120-139 14-35 (73)
10 d1xkta_ c.69.1.22 (A:) Fatty a 7.5 71 0.0052 20.1 1.2 50 56-105 65-115 (286)
No 1
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=43.23 E-value=12 Score=23.05 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhh
Q 032402 61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEI 124 (141)
Q Consensus 61 ~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRy 124 (141)
+...|..+++ -++.+--+=-|..=.+-..++.+ |-++|++|+.|+.|-.
T Consensus 5 v~e~Qk~FQ~-~~g~PVhLKGG~~D~~LYr~Tm~--------------L~~~G~~~s~~~l~~a 53 (58)
T d1v54j_ 5 VAEKQKLFQE-DNGLPVHLKGGATDNILYRVTMT--------------LCLGGTLYSLYCLGWA 53 (58)
T ss_dssp HHHHHHHHHC-SSCCCTTTTTCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcC-CCCceEEecCCcchHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 4567778887 55544333333222333333322 3368999999987753
No 2
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=18.19 E-value=4.7 Score=26.60 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhh
Q 032402 108 ALELIGILFSTV 119 (141)
Q Consensus 108 llELVGigYt~W 119 (141)
-|||+|+||=+-
T Consensus 4 ~L~lvGVGYra~ 15 (90)
T d2zjre1 4 NLELRGVGFRAK 15 (90)
T ss_dssp EEECBSTTCCCC
T ss_pred EEEEEEEEEEEE
Confidence 378899998653
No 3
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=16.07 E-value=5.1 Score=26.39 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhhh
Q 032402 108 ALELIGILFSTVSV 121 (141)
Q Consensus 108 llELVGigYt~WFv 121 (141)
-|||+|+||=+.--
T Consensus 4 ~LelvGVGYra~~~ 17 (89)
T d2j01h2 4 ELLIKGIGYRARLV 17 (89)
T ss_dssp EECCCSSSCEECCB
T ss_pred EEEEEEEEEEEEEe
Confidence 47899999865443
No 4
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.07 E-value=5.4 Score=26.24 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=8.1
Q ss_pred hHHHHHHHHHh
Q 032402 108 ALELIGILFST 118 (141)
Q Consensus 108 llELVGigYt~ 118 (141)
-||++|+||=+
T Consensus 4 ~L~lvGVGYra 14 (89)
T d1rl6a2 4 ALELVGVGYRA 14 (89)
T ss_dssp EEEEESTTCEE
T ss_pred EEEEEEEEEEE
Confidence 47888888843
No 5
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=15.64 E-value=52 Score=24.48 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 032402 58 LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117 (141)
Q Consensus 58 ~e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt 117 (141)
+++-|+..| |++ . ++....+.++|. +++.++.++-.+..-+-+-.++|++|-
T Consensus 32 ~~~~k~w~~-~~~-~-~~~~~~~~ivg~-----i~s~l~~~l~~~~~~~ils~l~~~lwP 83 (263)
T d1i5pa3 32 DTIQKEWME-WKR-T-DHSLYVAPVVGT-----VSSFLLKKVGSLIGKRILSELWGIIFP 83 (263)
T ss_dssp HHHHHHHHH-HHH-H-SCCCSCCTHHHH-----HHHHHHHHHTSTTCCCCHHHHHHHHSG
T ss_pred ccchhhHHH-HHh-c-CcchhHHHHHHH-----HHHHHHHhhhhHhHHHHHHHHHHHHcC
Confidence 466777766 777 3 332222222222 233444444433333345677787764
No 6
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=13.64 E-value=6.7 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhhh
Q 032402 108 ALELIGILFSTVSV 121 (141)
Q Consensus 108 llELVGigYt~WFv 121 (141)
-|||+|+||=+..-
T Consensus 4 ~L~lvGVGYRa~~~ 17 (95)
T d2qamg2 4 KLQLVGVGYRAAVK 17 (95)
T ss_dssp CCCBCSSSCCCCCC
T ss_pred EEEEEeEEEEEEEc
Confidence 47889999865443
No 7
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=10.74 E-value=2e+02 Score=18.83 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=22.9
Q ss_pred HHHHHHHh--hccCCchhhHHHHHHHHHhhhhhhhh
Q 032402 92 SVNLITAI--DKLPIIPNALELIGILFSTVSVIEII 125 (141)
Q Consensus 92 ~~~vl~AI--d~iPLlp~llELVGigYt~WFvyRyL 125 (141)
.....+++ ++-+|=+...|+|++-.+-..-..|-
T Consensus 50 ~~~~~~~~~~~~~~L~~~~~Eli~l~vs~~n~c~YC 85 (190)
T d2prra1 50 FFAYHDALMLKDGGLTKGEREMIVVATSAANQCLYC 85 (190)
T ss_dssp HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHhCCchH
Confidence 34455566 45667889999999988854444443
No 8
>d2gmya1 a.152.1.3 (A:2-148) Hypothetical protein Atu0492 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.24 E-value=1.4e+02 Score=19.01 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHhhh
Q 032402 57 SLTVFKSVQNVWDN 70 (141)
Q Consensus 57 ~~e~~~~lq~~Wd~ 70 (141)
++|+.+.+++-|++
T Consensus 103 ~d~~~~~l~~~fs~ 116 (147)
T d2gmya1 103 PDDAFETLRAHFSD 116 (147)
T ss_dssp CHHHHHHHHHHSCH
T ss_pred CHHHHHHHHhcCCH
Confidence 35778888887766
No 9
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.36 E-value=52 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.1
Q ss_pred hhhhhhhcccchh--HHHHhhh
Q 032402 120 SVIEIIIWHGCCE--WEKKIKE 139 (141)
Q Consensus 120 FvyRyLl~~~~R~--l~~kik~ 139 (141)
-|-|||.+++--- |++|+++
T Consensus 14 aVrRYL~RKPmTt~eLL~Kfk~ 35 (73)
T d1i27a_ 14 AVRRYLTRKPMTTKDLLKKFQT 35 (73)
T ss_dssp HHHHHHHHSCBCHHHHHHTSCH
T ss_pred HHHHHHhhCCCcHHHHHHHHhh
Confidence 3679999998544 8888764
No 10
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=71 Score=20.12 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 032402 56 TSLTVFKSVQNVWDNSS-EDRLGLIGLGFAGIVALWASVNLITAIDKLPII 105 (141)
Q Consensus 56 ~~~e~~~~lq~~Wd~~~-e~k~~~~~l~~aaival~~~~~vl~AId~iPLl 105 (141)
+-+++..+.-+...+.. ++++.++|.-.|+.+++.+..-.-+.+.++.++
T Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l 115 (286)
T d1xkta_ 65 SIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH 115 (286)
T ss_dssp CHHHHHHHHHHHHHHHCCSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence 34577777766666633 347778888999999998887776655555443
Done!