BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032403
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12KG8|TYSY_SHEDO Thymidylate synthase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=thyA PE=3 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQ 69
W GG ++ + KL+++REP A P M++ RK + S +D DD + + P
Sbjct: 201 WTGGDTHLYSNHMEQTKLQLSREPHALPQMNILRKPE-SIFDYQFDDFELVNYQPH 255
>sp|Q603S2|TYSY_METCA Thymidylate synthase OS=Methylococcus capsulatus (strain ATCC 33009
/ NCIMB 11132 / Bath) GN=thyA PE=3 SV=1
Length = 260
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDD--NDDLQLDPQLR 71
W GG + + A+L++TREP PT+ + RK GS +D +D +D Q P ++
Sbjct: 197 WCGGDVHLYLNHLEQARLQLTREPYPPPTLKLARK-PGSLFDYRYEDFVVEDYQAHPHIK 255
>sp|A4VGL9|TYSY_PSEU5 Thymidylate synthase OS=Pseudomonas stutzeri (strain A1501) GN=thyA
PE=3 SV=2
Length = 264
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVK---GSRYDDVD 58
W GG A+ + A L++TREP PTM + +VK R++D +
Sbjct: 201 WSGGDCHLYANHLEQADLQLTREPLPLPTMKLNPEVKDLFAFRFEDFE 248
>sp|A1TM53|TYSY_ACIAC Thymidylate synthase OS=Acidovorax citrulli (strain AAC00-1)
GN=thyA PE=3 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK 48
W GG ++ F+ +L+++R P PT+H+ R+
Sbjct: 216 WTGGDCHIYSNHFEQVELQLSRAPHPYPTLHILRR 250
>sp|Q8UDS3|TYSY_AGRT5 Thymidylate synthase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=thyA PE=3 SV=2
Length = 264
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 23 ADKFKDAKLKVTREPGATPTMHVPRKVK---GSRYDDVDDDN 61
A+ F+ A+L++TR P A PTM + VK G +++D +N
Sbjct: 210 ANHFEQAQLQMTRTPKALPTMRLNPDVKNLFGFKFEDFTLEN 251
>sp|Q7N8U4|TYSY_PHOLL Thymidylate synthase OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=thyA PE=3 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQ 69
W GG ++ + KL+++REP + P + + RK S +D DD + + DP
Sbjct: 201 WTGGDTHLYSNHMEQTKLQLSREPRSLPKLVIKRK-PASLFDYKFDDFEIVDYDPH 255
>sp|Q1LK81|TYSY_RALME Thymidylate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC
43123 / DSM 2839) GN=thyA PE=3 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTM---HVPRKVKGSRYDDVD 58
W GG ++ F+ + +++REP PT+ H P + +YDD +
Sbjct: 201 WTGGDCHIYSNHFEQVETQLSREPMKLPTLRIKHRPDSIFDYKYDDFE 248
>sp|B2HCU4|Y1058_MYCMM Putative S-adenosyl-L-methionine-dependent methyltransferase
MMAR_1058 OS=Mycobacterium marinum (strain ATCC BAA-535
/ M) GN=MMAR_1058 PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 38 GATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA 97
GAT TM + + SR D DD +P +R Q L R+ DT V PP+
Sbjct: 17 GATATMVAASRARASRGPDAL--LDDRLAEPLVRAV---GLQPLVRMIDGDTAVDD-PPS 70
Query: 98 MAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLGQEEKARRVR 141
+++ ++ TR F FF G ++++ L R R
Sbjct: 71 SPRSLNEQIAVRTRYFDDFFTAAGAGGIRQAVILASGLDTRAYR 114
>sp|B6JB67|TYSY_OLICO Thymidylate synthase OS=Oligotropha carboxidovorans (strain ATCC
49405 / DSM 1227 / OM5) GN=thyA PE=3 SV=1
Length = 264
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 23 ADKFKDAKLKVTREPGATPTMHV---PRKVKGSRYDDVDDDNDD 63
++ A+L++TR P A PT+ + R + G RY+D +N D
Sbjct: 210 SNHLDQARLQLTRAPRALPTLRINPAVRDIFGFRYEDFKLENYD 253
>sp|Q2LXU8|MNMG_SYNAS tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Syntrophus aciditrophicus (strain SB) GN=mnmG PE=3
SV=2
Length = 639
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 55 DDVDDDNDDL---QLDPQLRYS--FQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRNLSFF 109
+DV D D + Q++ + +Y QR + + R+ ++++ + +PP M Y+ LS
Sbjct: 530 EDVPDGYDRMIRKQIEIEAKYEGYIQRQREAVVRMKALES--RRIPPGMDYSAIPGLSNE 587
Query: 110 TRIFTQFFDPEGIANAQKSLGLGQ 133
R+ +PE I A++ G+ Q
Sbjct: 588 LRMKLARVEPETIGQARRITGMTQ 611
>sp|Q8BIE6|FRM4A_MOUSE FERM domain-containing protein 4A OS=Mus musculus GN=Frmd4a PE=1
SV=2
Length = 1020
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 9 LTKAPWRGGGDDDEADKFKDAKLKVTREP 37
L K WRGGGD+ +A + ++ ++ R P
Sbjct: 860 LFKESWRGGGDEGDAGRLTPSRSQILRTP 888
>sp|A7MR31|TYSY_CROS8 Thymidylate synthase OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=thyA PE=3 SV=1
Length = 264
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 14 WRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRK 48
W GG ++ + A+L++TREP P + + RK
Sbjct: 201 WTGGDTHLYSNHLEQARLQLTREPRPLPKLVIKRK 235
>sp|A0PM88|Y817_MYCUA Putative S-adenosyl-L-methionine-dependent methyltransferase
MUL_0817 OS=Mycobacterium ulcerans (strain Agy99)
GN=MUL_0817 PE=3 SV=1
Length = 300
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 38 GATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQR--NYQFLQRVFSIDTVVKPLP 95
GAT TM + + SR D LD +L R Q L R+ DT V P
Sbjct: 17 GATATMVAASRARASR-------GPDALLDDRLAGPLVRAVGLQPLVRMIDGDTAVDD-P 68
Query: 96 PAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKS--LGLGQEEKARRV 140
P+ +++ ++ TR F FF G +++ L G + +A R+
Sbjct: 69 PSSPRSLNEQIAVRTRYFDDFFTAAGAGGIRQAVILASGLDTRAYRL 115
>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000
OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1
Length = 481
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 9 LTKAPWRGGGDDDEADKFKDAKLKVTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDP 68
L+++P+ G DD+A K+ L+ + G ++ K++G+ + ++ +
Sbjct: 38 LSRSPFHQSGGDDDASGLKNQLLRFRNDSGKVASVLERNKIQGAAFVELLRQLRPWPVLS 97
Query: 69 QLRYSFQRN 77
QL + ++RN
Sbjct: 98 QLVFDWRRN 106
>sp|Q3V209|TMUB2_MOUSE Transmembrane and ubiquitin-like domain-containing protein 2 OS=Mus
musculus GN=Tmub2 PE=1 SV=1
Length = 319
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 10 TKAPWRGGGDDDEADKFKDAKLKVTREPGA 39
T+ P GG+DD+A++ D+ T EPGA
Sbjct: 96 TEHPHPSGGNDDKAEETSDSGGDATGEPGA 125
>sp|C0M8R7|PYRDA_STRE4 Putative dihydroorotate dehydrogenase A (fumarate) OS=Streptococcus
equi subsp. equi (strain 4047) GN=pyrD PE=3 SV=1
Length = 311
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 68 PQLRYSFQRNYQFLQRVFSIDTVVKP----LPPAMAYNVSRNLSFFTRIFTQFFDPEGIA 123
PQL Y F+ Q L+++FS T KP LPP Y + IF Q+ P A
Sbjct: 138 PQLAYDFEATDQLLKKIFSYYT--KPLGIKLPP---YFDIVHFDQAAAIFNQY--PLAFA 190
Query: 124 NAQKSLGLG 132
N S+G G
Sbjct: 191 NCVNSIGNG 199
>sp|Q75B91|EXO84_ASHGO Exocyst complex component EXO84 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=EXO84
PE=3 SV=2
Length = 697
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 37 PGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNY-QFLQRVFSIDTVVKPLP 95
PG T P K+K + Y+D D LQL P++ +R +QR S+ K +P
Sbjct: 19 PGKTRQQGSPTKLKSNAYEDFVSPRDTLQL-PEIGMKDRRKVGTSMQRRLSVHN-AKYIP 76
Query: 96 PAMAY 100
P + Y
Sbjct: 77 PPIDY 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,816,269
Number of Sequences: 539616
Number of extensions: 2205595
Number of successful extensions: 5912
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 5894
Number of HSP's gapped (non-prelim): 45
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)