Query 032403
Match_columns 141
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 13:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09933 DUF2165: Predicted sm 47.8 11 0.00024 29.8 1.4 17 74-90 29-45 (160)
2 PF05404 TRAP-delta: Transloco 35.3 23 0.0005 28.6 1.5 20 115-134 99-118 (167)
3 COG5472 Predicted small integr 34.0 5.3 0.00011 32.5 -2.3 18 74-91 29-46 (164)
4 PF15366 DUF4597: Domain of un 33.8 39 0.00084 23.9 2.2 32 36-69 29-62 (62)
5 PF09664 DUF2399: Protein of u 32.3 27 0.00059 26.8 1.4 13 117-129 75-87 (152)
6 COG1460 Uncharacterized protei 28.4 46 0.001 25.6 2.1 24 65-88 26-49 (114)
7 PF14770 TMEM18: Transmembrane 23.4 21 0.00045 27.2 -0.6 18 103-122 63-80 (123)
8 PF11181 YflT: Heat induced st 22.0 80 0.0017 22.1 2.2 33 106-138 56-89 (103)
9 PF06420 Mgm101p: Mitochondria 19.2 45 0.00098 27.4 0.5 65 65-134 40-127 (171)
10 cd03721 SOCS_ASB2 SOCS (suppre 18.5 1.1E+02 0.0024 19.6 2.0 26 71-99 11-36 (45)
No 1
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=47.76 E-value=11 Score=29.83 Aligned_cols=17 Identities=41% Similarity=0.856 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhccccc
Q 032403 74 FQRNYQFLQRVFSIDTV 90 (141)
Q Consensus 74 FqRNfqFlqRvfsidt~ 90 (141)
|.=|+||++.|+|.||.
T Consensus 29 y~sN~~fV~hVlsMdt~ 45 (160)
T PF09933_consen 29 YGSNFQFVRHVLSMDTT 45 (160)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 56799999999999988
No 2
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.25 E-value=23 Score=28.64 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=17.4
Q ss_pred cccChhhHHHHHHhhcCchh
Q 032403 115 QFFDPEGIANAQKSLGLGQE 134 (141)
Q Consensus 115 QFfd~~Gi~naqkSlGlGqE 134 (141)
+|||+||.+..+|.+--|+.
T Consensus 99 ~~fDEegyaalrKA~R~ged 118 (167)
T PF05404_consen 99 KFFDEEGYAALRKAQRNGED 118 (167)
T ss_pred EEeChHHHHHHHHHhhcCCC
Confidence 68999999999998876665
No 3
>COG5472 Predicted small integral membrane protein [Function unknown]
Probab=33.97 E-value=5.3 Score=32.46 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhcccccc
Q 032403 74 FQRNYQFLQRVFSIDTVV 91 (141)
Q Consensus 74 FqRNfqFlqRvfsidt~v 91 (141)
|.-||||++-|+|.||+.
T Consensus 29 yntNfvFV~HVlSMDT~f 46 (164)
T COG5472 29 YNTNFVFVHHVLSMDTIF 46 (164)
T ss_pred cccceEeeeeeeeccccC
Confidence 677999999999999983
No 4
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=33.82 E-value=39 Score=23.91 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=17.7
Q ss_pred CCCCCCeeeecCCCCCCC--CCCCCCCCCCCCCChH
Q 032403 36 EPGATPTMHVPRKVKGSR--YDDVDDDNDDLQLDPQ 69 (141)
Q Consensus 36 ~pg~t~TM~vP~~~~~~~--~~~~d~~~d~~eiDPe 69 (141)
-|--|. |.+||..+... |.+-.-.+| .|||||
T Consensus 29 PPTPTg-~~lpRDs~~~vwlDe~gs~~dD-~e~dpE 62 (62)
T PF15366_consen 29 PPTPTG-MMLPRDSRRTVWLDETGSCPDD-GELDPE 62 (62)
T ss_pred CCCCCc-eecccccCcceecccccCCCCc-cccCCC
Confidence 344444 44999887543 222222334 399997
No 5
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=32.25 E-value=27 Score=26.78 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=11.1
Q ss_pred cChhhHHHHHHhh
Q 032403 117 FDPEGIANAQKSL 129 (141)
Q Consensus 117 fd~~Gi~naqkSl 129 (141)
|||+||+.|++-+
T Consensus 75 fDp~Gl~IA~~l~ 87 (152)
T PF09664_consen 75 FDPEGLRIANRLI 87 (152)
T ss_pred CCHHHHHHHHHHH
Confidence 8999999998754
No 6
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.41 E-value=46 Score=25.63 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=20.6
Q ss_pred CCChHhHHHHHHHHHHHHHhhccc
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSID 88 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsid 88 (141)
+.|+||.|.+++|..+++++-.+|
T Consensus 26 ~~~~eL~y~~~~al~y~~kFakld 49 (114)
T COG1460 26 EREEELTYEQREALEYAEKFAKLD 49 (114)
T ss_pred cccccchHHHHHHHHHHHHHhcCC
Confidence 678999999999999999876444
No 7
>PF14770 TMEM18: Transmembrane protein 18
Probab=23.41 E-value=21 Score=27.16 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=13.0
Q ss_pred hcccchhhhhhhcccChhhH
Q 032403 103 SRNLSFFTRIFTQFFDPEGI 122 (141)
Q Consensus 103 srN~~FftriFTQFfd~~Gi 122 (141)
++|..-|.+- ||||+.|+
T Consensus 63 a~nW~~Fs~q--nYFDs~G~ 80 (123)
T PF14770_consen 63 ARNWRSFSKQ--NYFDSSGV 80 (123)
T ss_pred HHHHHHHhhc--cCcCCCCe
Confidence 4565556554 99999995
No 8
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.96 E-value=80 Score=22.09 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=24.6
Q ss_pred cchhhhhhhccc-ChhhHHHHHHhhcCchhhhhc
Q 032403 106 LSFFTRIFTQFF-DPEGIANAQKSLGLGQEEKAR 138 (141)
Q Consensus 106 ~~FftriFTQFf-d~~Gi~naqkSlGlGqE~k~R 138 (141)
-||+.+|-.=|- +.+++.+.-.||||..++-.+
T Consensus 56 ~~~~d~~~~~f~~~~d~~~~~l~~lGl~~~ea~~ 89 (103)
T PF11181_consen 56 ESFWDKIKNFFTSGGDELRSKLESLGLSEDEAER 89 (103)
T ss_pred ccHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHH
Confidence 467776655444 588899999999999887543
No 9
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=19.24 E-value=45 Score=27.42 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=39.1
Q ss_pred CCChHhHHHHHHHHHHHHHhhcc-ccccccCCchh--hhhhhcccchhh--------hhhhcccChhhHHHHH-------
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSI-DTVVKPLPPAM--AYNVSRNLSFFT--------RIFTQFFDPEGIANAQ------- 126 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsi-dt~vkpLPp~m--~~~vsrN~~Fft--------riFTQFfd~~Gi~naq------- 126 (141)
..=||..|- +-|-++|-+ -=-|.|.-+.+ .-.|+|-...+. |==.+||+++||.+|-
T Consensus 40 iYLPEikYR-----RiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic~Gr~Vs~a~GEq~yf~~~~i~tA~EgcKSNA 114 (171)
T PF06420_consen 40 IYLPEIKYR-----RILNKAFGPGGWGLVPRGETIVTGKIVTREYALICHGRLVSQARGEQDYFSPDSIPTATEGCKSNA 114 (171)
T ss_pred EEchHHHHH-----HHHHHhcCCCceeeeecCCceecCceEEEEEEEEEcCEEEEEeeccccccCCCCCchHHHHHHHHH
Confidence 555788874 457777744 22344443332 345555544432 2235799999987764
Q ss_pred -----HhhcCchh
Q 032403 127 -----KSLGLGQE 134 (141)
Q Consensus 127 -----kSlGlGqE 134 (141)
|.|||+.|
T Consensus 115 LmRCCKDLGIaSE 127 (171)
T PF06420_consen 115 LMRCCKDLGIASE 127 (171)
T ss_pred HHHHHHHcCcchh
Confidence 67899887
No 10
>cd03721 SOCS_ASB2 SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=18.54 E-value=1.1e+02 Score=19.57 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhccccccccCCchhh
Q 032403 71 RYSFQRNYQFLQRVFSIDTVVKPLPPAMA 99 (141)
Q Consensus 71 RysFqRNfqFlqRvfsidt~vkpLPp~m~ 99 (141)
|++.++.+.. ++.-.|+.+ |||+.+.
T Consensus 11 Rl~IR~~lg~-~~l~~I~~L--~LP~~Lk 36 (45)
T cd03721 11 RLKVRTLIGI-NRIKLIDTL--PLPPRLI 36 (45)
T ss_pred HHHHHHHHhH-HhhccCccC--CCCHHHH
Confidence 6777777766 555568777 8998764
Done!