Query 032403
Match_columns 141
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 22:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 59.4 2.8 9.6E-05 25.0 0.7 17 110-127 4-20 (29)
2 4abo_I MAL3, microtubule integ 38.3 15 0.00053 27.9 2.0 53 65-118 52-106 (145)
3 3ukn_A Novel protein similar t 33.8 59 0.002 22.4 4.3 60 65-125 29-94 (212)
4 2qjx_A Protein BIM1; calponin 33.8 22 0.00075 26.1 2.2 54 65-119 56-111 (127)
5 2r8u_A Microtubule-associated 27.7 30 0.001 28.4 2.2 53 65-118 62-116 (268)
6 1i58_A Chemotaxis protein CHEA 25.3 30 0.001 23.4 1.5 27 108-134 131-157 (189)
7 3mfq_A TROA, high-affinity zin 21.4 60 0.0021 25.1 2.8 33 65-97 125-162 (282)
8 3o9x_A Uncharacterized HTH-typ 19.4 40 0.0014 22.4 1.2 29 111-139 65-93 (133)
9 3en2_A Probable primosomal rep 18.0 10 0.00035 26.6 -2.1 7 67-73 14-20 (101)
10 3k8a_A Putative primosomal rep 15.8 12 0.00042 25.9 -2.1 7 67-73 19-25 (103)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=59.37 E-value=2.8 Score=24.99 Aligned_cols=17 Identities=47% Similarity=0.860 Sum_probs=14.1
Q ss_pred hhhhhcccChhhHHHHHH
Q 032403 110 TRIFTQFFDPEGIANAQK 127 (141)
Q Consensus 110 triFTQFfd~~Gi~naqk 127 (141)
.|||+-||.| ||+.||-
T Consensus 4 Ari~as~faP-GvaAAqA 20 (29)
T 1xnl_A 4 ARIFASILAP-GVAAAQA 20 (29)
T ss_dssp TSSTTTSSST-TTHHHHH
T ss_pred hhHHHHHhCc-cHHHHHH
Confidence 5899999987 8888874
No 2
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=38.30 E-value=15 Score=27.87 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=37.5
Q ss_pred CCChHhHHHHHHHHHHHHHhhccccccccCCch--hhhhhhcccchhhhhhhcccC
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFD 118 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp~--m~~~vsrN~~FftriFTQFfd 118 (141)
.+++.+.|.|.+||.-||.+|.=-.+=|++|-. +.-..-.||-|. .-|-.|||
T Consensus 52 kf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk~QDNlEFl-QWfkkf~d 106 (145)
T 4abo_I 52 NFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFV-QWAKRFWD 106 (145)
T ss_dssp CSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccchHhHHHHH-HHHHHHHH
Confidence 567778899999999999999777777777743 444555677643 33444444
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=33.77 E-value=59 Score=22.40 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCChHhHHHHHHHHHHH---HHhhccccccccCCchhhhhhhcccchhh---hhhhcccChhhHHHH
Q 032403 65 QLDPQLRYSFQRNYQFL---QRVFSIDTVVKPLPPAMAYNVSRNLSFFT---RIFTQFFDPEGIANA 125 (141)
Q Consensus 65 eiDPeLRysFqRNfqFl---qRvfsidt~vkpLPp~m~~~vsrN~~Fft---riFTQFfd~~Gi~na 125 (141)
.|+++|+..-.+-|++. .+.+..+.++.-||+.+...+...+.-.. .+|.. ++++-+...
T Consensus 29 ~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~~~~~f~~-l~~~~l~~l 94 (212)
T 3ukn_A 29 RLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELLQLPLFES-ASRGCLRSL 94 (212)
T ss_dssp TCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGGGSGGGTT-CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcHHhhc-CCHHHHHHH
Confidence 68999998888888877 34556688999999999888776654332 33443 455544443
No 4
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=33.77 E-value=22 Score=26.14 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=38.5
Q ss_pred CCChHhHHHHHHHHHHHHHhhccccccccCCch--hhhhhhcccchhhhhhhcccCh
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFDP 119 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp~--m~~~vsrN~~FftriFTQFfd~ 119 (141)
..++..-|.|.+||.-||.+|.=-.+-+++|-. +.-..-.||-|. .-|-.|||.
T Consensus 56 kf~a~~e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgrfQDNlEFl-QWfkkf~d~ 111 (127)
T 2qjx_A 56 KFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFL-QWLKKHWIR 111 (127)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHH-HHHHHHHHh
Confidence 345666799999999999999777777777753 444456677653 446667763
No 5
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=27.68 E-value=30 Score=28.44 Aligned_cols=53 Identities=26% Similarity=0.476 Sum_probs=37.3
Q ss_pred CCChHhHHHHHHHHHHHHHhhccccccccCCch--hhhhhhcccchhhhhhhcccC
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFD 118 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp~--m~~~vsrN~~FftriFTQFfd 118 (141)
.+++.+.|-|.+||.-||.+|.=-.+=|++|-. +.-..-.||-|. .-|-.|||
T Consensus 62 kf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFl-qWfkkf~d 116 (268)
T 2r8u_A 62 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFV-QWFKKFFD 116 (268)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHH-HHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHH-HHHHHHHH
Confidence 567888999999999999999777777777753 344455676653 33444443
No 6
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=25.32 E-value=30 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=18.7
Q ss_pred hhhhhhhcccChhhHHHHHHhhcCchh
Q 032403 108 FFTRIFTQFFDPEGIANAQKSLGLGQE 134 (141)
Q Consensus 108 FftriFTQFfd~~Gi~naqkSlGlGqE 134 (141)
+..+||..||....-..-....|||.-
T Consensus 131 ~~~~if~~~~~~~~~~~~~~g~GlGL~ 157 (189)
T 1i58_A 131 ILNFLFVPGFSTKEKVSEVSGRGVGMD 157 (189)
T ss_dssp HHGGGGSTTCSHHHHHHGGGTCCCHHH
T ss_pred hHHHhcCCcccccccCCCCCCCccCHH
Confidence 457889999987665444456777753
No 7
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=21.35 E-value=60 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCChHhHHHHHHHHH-HHHHhhcccc----ccccCCch
Q 032403 65 QLDPQLRYSFQRNYQ-FLQRVFSIDT----VVKPLPPA 97 (141)
Q Consensus 65 eiDPeLRysFqRNfq-FlqRvfsidt----~vkpLPp~ 97 (141)
++||+-.=.|+.|++ |+++.=.+|. .+.++|..
T Consensus 125 ~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~ 162 (282)
T 3mfq_A 125 KLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKE 162 (282)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred HhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 799999999999998 5555544544 56777753
No 8
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=19.36 E-value=40 Score=22.41 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=22.1
Q ss_pred hhhhcccChhhHHHHHHhhcCchhhhhcc
Q 032403 111 RIFTQFFDPEGIANAQKSLGLGQEEKARR 139 (141)
Q Consensus 111 riFTQFfd~~Gi~naqkSlGlGqE~k~Rr 139 (141)
++-+..+.++-|..+++.+||.|++=+++
T Consensus 65 ~~~~~~~~~~~l~~~R~~~glsq~~la~~ 93 (133)
T 3o9x_A 65 SVNAETVAPEFIVKVRKKLSLTQKEASEI 93 (133)
T ss_dssp HHHTTTCCHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34345667888999999999999886554
No 9
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=18.00 E-value=10 Score=26.61 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=5.2
Q ss_pred ChHhHHH
Q 032403 67 DPQLRYS 73 (141)
Q Consensus 67 DPeLRys 73 (141)
||||||+
T Consensus 14 dPelRyT 20 (101)
T 3en2_A 14 REVMRYT 20 (101)
T ss_dssp ECCCEEC
T ss_pred CccEEEC
Confidence 6778875
No 10
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=15.84 E-value=12 Score=25.87 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=5.2
Q ss_pred ChHhHHH
Q 032403 67 DPQLRYS 73 (141)
Q Consensus 67 DPeLRys 73 (141)
||||||+
T Consensus 19 dPelRyt 25 (103)
T 3k8a_A 19 AFPIRYT 25 (103)
T ss_dssp ECCCEEC
T ss_pred CCceEEC
Confidence 6788875
Done!