Query 032403
Match_columns 141
No_of_seqs 20 out of 22
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 22:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032403.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032403hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i58a_ d.122.1.3 (A:) Histidi 33.6 6.7 0.00049 24.3 1.1 20 26-45 165-184 (189)
2 d2qjza1 a.40.1.1 (A:13-132) Mi 30.1 12 0.00089 25.5 2.0 53 65-118 50-104 (120)
3 d3dmca1 d.17.4.10 (A:1-133) Un 20.3 4.6 0.00033 25.4 -1.7 12 113-124 122-133 (133)
4 d1q3ea_ b.82.3.2 (A:) HCN pace 18.4 19 0.0014 23.4 1.0 40 65-104 22-63 (193)
5 d2c2aa2 d.122.1.3 (A:321-481) 16.5 18 0.0013 23.7 0.6 42 92-133 79-126 (161)
6 d2czvc1 d.58.59.1 (C:3-120) RN 15.9 19 0.0014 23.4 0.5 10 91-100 3-12 (118)
7 d1gkza2 d.122.1.4 (A:186-378) 15.8 24 0.0017 23.2 1.1 19 27-45 165-183 (193)
8 d2bmfa1 c.37.1.14 (A:483-618) 12.1 24 0.0017 25.0 0.2 65 33-114 16-81 (136)
9 d1gz8a_ d.144.1.7 (A:) Cyclin- 11.5 33 0.0024 23.8 0.8 28 65-96 268-295 (298)
10 d3bzka5 c.55.3.13 (A:325-473) 11.4 29 0.0021 23.7 0.5 10 65-74 115-124 (149)
No 1
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=33.63 E-value=6.7 Score=24.33 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=16.0
Q ss_pred ccccceeEeeCCCCCCeeee
Q 032403 26 FKDAKLKVTREPGATPTMHV 45 (141)
Q Consensus 26 f~~~klkvT~~pg~t~TM~v 45 (141)
.-.|++.|+|++|.++|.++
T Consensus 165 ~hgG~I~v~S~~g~GT~f~i 184 (189)
T d1i58a_ 165 SLNGSISIESEKDKGTKVTI 184 (189)
T ss_dssp HTTCEEEEEEETTTEEEEEE
T ss_pred HCCCEEEEEecCCCCEEEEE
Confidence 45688999999998877654
No 2
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.06 E-value=12 Score=25.51 Aligned_cols=53 Identities=26% Similarity=0.476 Sum_probs=37.3
Q ss_pred CCChHhHHHHHHHHHHHHHhhccccccccCCch--hhhhhhcccchhhhhhhcccC
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPA--MAYNVSRNLSFFTRIFTQFFD 118 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp~--m~~~vsrN~~FftriFTQFfd 118 (141)
-.++..-|-|.+||.-||.+|.=-.+=+++|-. +.-....|+-| ..-|-.|||
T Consensus 50 kf~a~~e~e~~~N~klLq~af~kl~I~k~i~v~kLikgk~qdnlef-lqWfk~f~d 104 (120)
T d2qjza1 50 KFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF-VQWFKKFFD 104 (120)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHH-HHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhcccchhHHHH-HHHHHHHHH
Confidence 457888899999999999999877777777753 33334456543 445556665
No 3
>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}
Probab=20.28 E-value=4.6 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=8.9
Q ss_pred hhcccChhhHHH
Q 032403 113 FTQFFDPEGIAN 124 (141)
Q Consensus 113 FTQFfd~~Gi~n 124 (141)
|..|||++|+.|
T Consensus 122 ~reY~ds~~~~~ 133 (133)
T d3dmca1 122 YREYFGSDGKSN 133 (133)
T ss_dssp EEEEECSCSBCC
T ss_pred EEEEECCCCccC
Confidence 567888888765
No 4
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.38 E-value=19 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCChHhHHHHHHHHHHHH--HhhccccccccCCchhhhhhhc
Q 032403 65 QLDPQLRYSFQRNYQFLQ--RVFSIDTVVKPLPPAMAYNVSR 104 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlq--Rvfsidt~vkpLPp~m~~~vsr 104 (141)
.|+++|+..-.+.|+++- +.+.-+.+++.||+.+...+..
T Consensus 22 ~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~ 63 (193)
T d1q3ea_ 22 KLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVN 63 (193)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHH
Confidence 688999988888888763 3445567889999999887764
No 5
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=16.55 E-value=18 Score=23.72 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred ccCCchhhhhhhcc-----cchhhhhhhcccChhhHHH-HHHhhcCch
Q 032403 92 KPLPPAMAYNVSRN-----LSFFTRIFTQFFDPEGIAN-AQKSLGLGQ 133 (141)
Q Consensus 92 kpLPp~m~~~vsrN-----~~FftriFTQFfd~~Gi~n-aqkSlGlGq 133 (141)
..-...+...|+.| -.-.-+||..||--+.-.. ..+..|||.
T Consensus 79 ~~~~~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL 126 (161)
T d2c2aa2 79 DEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGL 126 (161)
T ss_dssp EEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTH
T ss_pred EecCCEEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHH
Confidence 33344555566655 1246899999996554333 334578885
No 6
>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.89 E-value=19 Score=23.42 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=8.5
Q ss_pred cccCCchhhh
Q 032403 91 VKPLPPAMAY 100 (141)
Q Consensus 91 vkpLPp~m~~ 100 (141)
+|+|||.|+.
T Consensus 3 ~k~l~p~lR~ 12 (118)
T d2czvc1 3 LKTLPPTLRD 12 (118)
T ss_dssp CCCCCTTTSC
T ss_pred CCcCCCcccc
Confidence 6899999875
No 7
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.77 E-value=24 Score=23.22 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=15.7
Q ss_pred cccceeEeeCCCCCCeeee
Q 032403 27 KDAKLKVTREPGATPTMHV 45 (141)
Q Consensus 27 ~~~klkvT~~pg~t~TM~v 45 (141)
-.|++.|.+++|.++|.++
T Consensus 165 ~gG~i~v~S~~g~Gt~f~l 183 (193)
T d1gkza2 165 LGGSLQLQSLQGIGTDVYL 183 (193)
T ss_dssp TTCEEEEEEETTTEEEEEE
T ss_pred CCCEEEEEecCCCceEEEE
Confidence 3588999999998888765
No 8
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=12.12 E-value=24 Score=25.04 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=38.6
Q ss_pred EeeCCCCCCeeeecCCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHHhhccccccccCCchhhhhhhcc-cchhhh
Q 032403 33 VTREPGATPTMHVPRKVKGSRYDDVDDDNDDLQLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPPAMAYNVSRN-LSFFTR 111 (141)
Q Consensus 33 vT~~pg~t~TM~vP~~~~~~~~~~~d~~~d~~eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp~m~~~vsrN-~~Fftr 111 (141)
++..-|-.+++|-|-..... +....--+..|=|--|. =|-+. --|||.+||+||.| .+..-|
T Consensus 16 i~~~~g~va~~ygpE~~K~~------~~~G~fRL~~E~RK~F~----~Ll~~-------~D~p~WLAw~VA~~g~~~~DR 78 (136)
T d2bmfa1 16 INTPEGIIPSMFEPEREKVD------AIDGEYRLRGEARKTFV----DLMRR-------GDLPVWLAYRVAAEGINYADR 78 (136)
T ss_dssp CCCTTCCCCCCCGGGSTTCC------CCTTTTCCCHHHHHHHH----HHHHT-------SCCCHHHHHHHHHTTCCTTCG
T ss_pred ccCCCCcceecccchhhccc------CCCceeecChhhHHHHH----HHHhh-------cCCchhhhHHHHHcCCCcccc
Confidence 34556777888888655332 00000145555554442 22222 25899999999999 677777
Q ss_pred hhh
Q 032403 112 IFT 114 (141)
Q Consensus 112 iFT 114 (141)
-.+
T Consensus 79 ~W~ 81 (136)
T d2bmfa1 79 RWC 81 (136)
T ss_dssp GGG
T ss_pred cee
Confidence 766
No 9
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.47 E-value=33 Score=23.76 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=18.9
Q ss_pred CCChHhHHHHHHHHHHHHHhhccccccccCCc
Q 032403 65 QLDPQLRYSFQRNYQFLQRVFSIDTVVKPLPP 96 (141)
Q Consensus 65 eiDPeLRysFqRNfqFlqRvfsidt~vkpLPp 96 (141)
++||+-|+|.+ |.|+--| +..+-+|+|.
T Consensus 268 ~~dP~~R~t~~---ell~H~f-f~~~~~p~p~ 295 (298)
T d1gz8a_ 268 HYDPNKRISAK---AALAHPF-FQDVTKPVPH 295 (298)
T ss_dssp CSSTTTSCCHH---HHHTSGG-GTTCCCCCCC
T ss_pred cCChhHCcCHH---HHhCCHh-hccCCCCCCC
Confidence 67788888776 5555544 5667777773
No 10
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.38 E-value=29 Score=23.75 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=6.5
Q ss_pred CCChHhHHHH
Q 032403 65 QLDPQLRYSF 74 (141)
Q Consensus 65 eiDPeLRysF 74 (141)
++||.||++-
T Consensus 115 ~~~~~~R~AV 124 (149)
T d3bzka5 115 ELDVSLRGAV 124 (149)
T ss_dssp TSCHHHHHHH
T ss_pred CCChhHhHHH
Confidence 5677777654
Done!