Query 032404
Match_columns 141
No_of_seqs 136 out of 361
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nqb_D Histone H2B; nucleosome 100.0 2.4E-55 8.2E-60 331.4 8.9 99 43-141 24-122 (123)
2 1tzy_B Histone H2B; histone-fo 100.0 3.2E-55 1.1E-59 331.8 8.6 99 43-141 27-125 (126)
3 2jss_A Chimera of histone H2B. 100.0 1.2E-39 4E-44 258.4 9.1 91 50-140 1-91 (192)
4 3b0c_W CENP-W, centromere prot 99.7 6.7E-17 2.3E-21 111.0 6.9 66 55-120 7-72 (76)
5 1b67_A Protein (histone HMFA); 99.1 1.6E-10 5.6E-15 76.8 6.6 61 57-118 7-67 (68)
6 1f1e_A Histone fold protein; a 98.9 2.8E-09 9.5E-14 82.5 6.7 63 57-120 87-149 (154)
7 2yfw_B Histone H4, H4; cell cy 98.4 6.8E-07 2.3E-11 64.3 6.9 62 56-118 33-94 (103)
8 1tzy_D Histone H4-VI; histone- 98.4 7.8E-07 2.7E-11 63.9 6.8 63 55-118 32-94 (103)
9 1ku5_A HPHA, archaeal histon; 98.3 1.2E-06 4.2E-11 58.5 6.7 59 57-116 11-69 (70)
10 1id3_B Histone H4; nucleosome 98.2 4.7E-06 1.6E-10 60.1 6.8 63 55-118 31-93 (102)
11 1n1j_A NF-YB; histone-like PAI 98.2 8.5E-06 2.9E-10 57.0 8.0 60 57-116 13-73 (93)
12 2hue_C Histone H4; mini beta s 98.1 6.5E-06 2.2E-10 57.1 5.6 62 56-118 14-75 (84)
13 3b0c_T CENP-T, centromere prot 98.0 1.4E-05 4.6E-10 58.4 7.1 61 56-117 11-71 (111)
14 1jfi_B DR1 protein, transcript 98.0 2.1E-05 7.1E-10 62.2 8.5 63 56-118 19-81 (179)
15 2byk_B Chrac-14; nucleosome sl 98.0 2.9E-05 1E-09 57.9 8.0 62 57-118 14-76 (128)
16 2nqb_C Histone H2A; nucleosome 97.9 3E-05 1E-09 57.7 7.3 64 53-116 23-87 (123)
17 2f8n_G Core histone macro-H2A. 97.9 3.4E-05 1.2E-09 57.2 7.2 64 53-116 22-86 (120)
18 1tzy_A Histone H2A-IV; histone 97.9 3.9E-05 1.3E-09 57.6 7.2 64 53-116 25-89 (129)
19 1f1e_A Histone fold protein; a 97.9 3.9E-05 1.3E-09 59.2 7.4 61 57-117 9-69 (154)
20 1id3_C Histone H2A.1; nucleoso 97.8 3.5E-05 1.2E-09 58.0 6.6 64 53-116 25-89 (131)
21 1taf_B TFIID TBP associated fa 97.8 7.4E-05 2.5E-09 51.0 7.5 60 57-117 11-70 (70)
22 2f8n_K Histone H2A type 1; nuc 97.8 5.2E-05 1.8E-09 58.4 7.0 64 53-116 44-108 (149)
23 1n1j_B NF-YC; histone-like PAI 97.8 7.7E-05 2.6E-09 52.8 6.9 60 57-117 24-84 (97)
24 1f66_C Histone H2A.Z; nucleoso 97.7 9.2E-05 3.2E-09 55.4 6.8 64 53-116 27-92 (128)
25 4g92_C HAPE; transcription fac 97.7 9.7E-05 3.3E-09 54.3 6.4 59 57-116 46-105 (119)
26 1h3o_B Transcription initiatio 97.6 0.00037 1.3E-08 48.3 8.2 60 57-116 10-69 (76)
27 1taf_A TFIID TBP associated fa 97.6 0.00044 1.5E-08 46.8 8.4 63 56-119 5-67 (68)
28 2hue_B Histone H3; mini beta s 97.6 0.00036 1.2E-08 48.4 8.0 66 52-117 7-72 (77)
29 1jfi_A Transcription regulator 97.5 0.00011 3.7E-09 52.3 4.6 59 57-116 16-75 (98)
30 4dra_A Centromere protein S; D 97.5 0.0002 6.9E-09 53.0 5.7 61 57-117 32-94 (113)
31 2jss_A Chimera of histone H2B. 97.4 0.00039 1.3E-08 54.6 7.2 71 53-125 105-177 (192)
32 3v9r_A MHF1, uncharacterized p 97.4 0.00056 1.9E-08 48.6 6.9 60 58-117 18-79 (90)
33 3b0b_B CENP-S, centromere prot 97.3 0.00035 1.2E-08 51.1 5.8 62 56-117 23-86 (107)
34 3nqj_A Histone H3-like centrom 97.3 0.0014 4.9E-08 45.8 8.3 67 52-118 7-75 (82)
35 1tzy_C Histone H3; histone-fol 97.3 0.0012 4E-08 50.2 8.1 65 53-117 67-131 (136)
36 2yfv_A Histone H3-like centrom 97.2 0.0013 4.6E-08 47.4 7.5 66 52-117 31-99 (100)
37 3ksy_A SOS-1, SON of sevenless 97.2 0.0015 5.2E-08 61.7 9.4 75 51-135 20-94 (1049)
38 3vh5_A CENP-S; histone fold, c 97.1 0.00081 2.8E-08 51.5 5.5 60 58-117 25-86 (140)
39 2ly8_A Budding yeast chaperone 97.0 0.0013 4.4E-08 49.1 6.1 49 69-117 63-111 (121)
40 3nqu_A Histone H3-like centrom 96.9 0.0041 1.4E-07 47.5 8.0 65 54-118 67-133 (140)
41 3r45_A Histone H3-like centrom 96.9 0.0039 1.3E-07 48.5 7.7 61 58-118 83-149 (156)
42 2byk_A Chrac-16; nucleosome sl 96.8 0.0023 7.9E-08 48.4 6.2 59 57-116 24-84 (140)
43 2l5a_A Histone H3-like centrom 96.4 0.0081 2.8E-07 49.3 6.9 50 69-118 177-226 (235)
44 2l5a_A Histone H3-like centrom 90.4 0.82 2.8E-05 37.4 7.1 68 50-117 13-83 (235)
45 3b0b_C CENP-X, centromere prot 88.5 2 6.8E-05 29.6 7.0 58 56-117 12-75 (81)
46 1bh9_B TAFII28; histone fold, 88.4 3.2 0.00011 28.9 8.1 61 58-119 22-83 (89)
47 4dra_E Centromere protein X; D 88.2 2.6 8.8E-05 29.4 7.4 63 56-118 16-80 (84)
48 3ksy_A SOS-1, SON of sevenless 86.0 2.1 7.3E-05 40.4 7.9 65 52-117 103-168 (1049)
49 3aji_B S6C, proteasome (prosom 74.0 5.5 0.00019 25.7 4.6 37 85-121 38-74 (83)
50 3vlf_B 26S protease regulatory 73.1 5 0.00017 26.7 4.3 38 87-124 40-77 (88)
51 2dzn_B 26S protease regulatory 70.6 5.4 0.00018 26.0 3.9 36 87-122 37-72 (82)
52 3f9v_A Minichromosome maintena 69.6 4.9 0.00017 35.5 4.6 65 53-119 506-588 (595)
53 1g8p_A Magnesium-chelatase 38 69.5 14 0.00047 28.6 6.7 58 66-123 263-327 (350)
54 2krk_A 26S protease regulatory 67.6 5 0.00017 26.8 3.3 36 86-121 49-84 (86)
55 3iz6_V 40S ribosomal protein S 63.9 15 0.0005 26.7 5.4 41 82-130 43-83 (108)
56 3kw6_A 26S protease regulatory 62.9 8 0.00027 24.7 3.5 36 86-121 41-76 (78)
57 3uk6_A RUVB-like 2; hexameric 56.1 69 0.0024 24.9 10.0 76 53-130 263-342 (368)
58 3k1j_A LON protease, ATP-depen 55.5 71 0.0024 27.7 9.3 64 54-117 295-374 (604)
59 2i5u_A DNAD domain protein; st 53.8 41 0.0014 22.1 6.0 49 56-105 2-59 (83)
60 3v9r_B MHF2, uncharacterized p 53.0 22 0.00076 25.0 4.6 65 58-122 7-80 (88)
61 2qby_A CDC6 homolog 1, cell di 51.8 78 0.0027 24.2 9.5 68 54-121 202-275 (386)
62 2v1u_A Cell division control p 51.3 80 0.0027 24.2 8.7 69 52-120 204-278 (387)
63 2r44_A Uncharacterized protein 49.1 43 0.0015 26.0 6.2 34 89-122 268-301 (331)
64 1lv7_A FTSH; alpha/beta domain 46.4 25 0.00087 26.2 4.4 35 87-121 221-255 (257)
65 3h4m_A Proteasome-activating n 46.2 51 0.0018 24.7 6.2 36 86-121 226-261 (285)
66 2dhr_A FTSH; AAA+ protein, hex 38.5 51 0.0018 28.6 5.7 51 87-137 240-301 (499)
67 1jr3_D DNA polymerase III, del 36.9 46 0.0016 26.1 4.7 66 52-119 145-210 (343)
68 1u5t_A Appears to BE functiona 36.5 85 0.0029 25.1 6.3 69 50-120 56-143 (233)
69 4b4t_J 26S protease regulatory 36.3 34 0.0012 29.3 4.1 41 82-122 353-393 (405)
70 3ctv_A HBD-10, 3-hydroxyacyl-C 32.6 62 0.0021 21.9 4.3 36 81-119 18-53 (110)
71 4b4t_I 26S protease regulatory 32.5 40 0.0014 29.4 4.0 41 82-122 387-427 (437)
72 2dn9_A DNAJ homolog subfamily 31.7 59 0.002 20.5 3.8 40 55-95 25-65 (79)
73 3g21_A GAG polyprotein, capsid 31.4 1.2E+02 0.0043 20.6 5.8 64 50-128 11-74 (77)
74 3sjr_A Uncharacterized protein 31.4 37 0.0013 26.5 3.2 46 49-98 95-143 (175)
75 2qby_B CDC6 homolog 3, cell di 30.5 1.9E+02 0.0063 22.3 8.1 67 52-120 200-272 (384)
76 3cuq_A Vacuolar-sorting protei 30.3 75 0.0026 25.5 5.0 68 51-120 37-129 (234)
77 4b4t_H 26S protease regulatory 30.1 41 0.0014 29.5 3.7 36 86-121 418-453 (467)
78 3iz6_S 40S ribosomal protein S 29.8 66 0.0023 24.3 4.3 38 54-91 99-146 (146)
79 1eg3_A Dystrophin; EF-hand lik 29.3 64 0.0022 26.0 4.5 24 100-123 143-166 (261)
80 1njg_A DNA polymerase III subu 28.8 1.1E+02 0.0039 21.0 5.2 60 53-115 189-248 (250)
81 3f8t_A Predicted ATPase involv 28.7 2.2E+02 0.0074 25.4 8.1 67 52-119 397-484 (506)
82 2chg_A Replication factor C sm 27.1 1.5E+02 0.0052 20.2 6.8 59 54-116 166-224 (226)
83 2ctp_A DNAJ homolog subfamily 26.6 89 0.003 19.6 4.0 21 55-75 25-45 (78)
84 2cug_A Mkiaa0962 protein; DNAJ 26.3 98 0.0033 20.1 4.3 20 55-74 35-54 (88)
85 2qz4_A Paraplegin; AAA+, SPG7, 25.8 22 0.00075 26.2 1.0 38 86-123 217-254 (262)
86 2rp5_A Putative uncharacterize 25.3 5.4 0.00018 30.0 -2.4 33 84-117 102-134 (136)
87 2ctr_A DNAJ homolog subfamily 24.4 1E+02 0.0035 19.9 4.1 20 56-75 26-45 (88)
88 3tir_A ROUS sarcoma virus caps 23.9 1.8E+02 0.0063 23.1 6.2 66 47-127 157-222 (226)
89 2iie_A Integration HOST factor 23.3 1E+02 0.0035 23.7 4.4 27 103-131 59-85 (204)
90 3g1g_A GAG polyprotein, capsid 23.0 1.3E+02 0.0045 20.9 4.5 18 50-67 10-27 (87)
91 4b4t_M 26S protease regulatory 22.4 71 0.0024 27.4 3.7 40 82-121 386-425 (434)
92 2dmx_A DNAJ homolog subfamily 22.2 1.5E+02 0.0053 19.1 4.7 18 55-72 27-44 (92)
93 3mn5_S Protein spire, actin, a 22.2 17 0.00059 21.8 -0.2 10 59-68 27-36 (38)
94 4b4t_L 26S protease subunit RP 20.9 84 0.0029 26.9 3.9 40 82-121 386-425 (437)
95 1a87_A Colicin N; bacteriocin, 20.8 1.3E+02 0.0044 25.6 4.8 31 69-99 127-157 (321)
96 2yua_A Williams-beuren syndrom 20.4 85 0.0029 20.9 3.1 17 55-71 35-51 (99)
97 2ce7_A Cell division protein F 20.4 1.1E+02 0.0039 26.2 4.6 35 87-121 225-259 (476)
98 2guz_A Mitochondrial import in 20.3 1.2E+02 0.004 19.0 3.6 20 55-74 33-52 (71)
No 1
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=2.4e-55 Score=331.38 Aligned_cols=99 Identities=78% Similarity=1.103 Sum_probs=92.5
Q ss_pred ccccccccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 43 KKKRTKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 43 ~kk~~k~r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
+++++++|.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||||
T Consensus 24 ~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 24 DKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp -----CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred CCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhhhhhhhcccCC
Q 032404 123 LAKHAVSEGTKAVTKFTSS 141 (141)
Q Consensus 123 LaKhAvseGtkAV~ky~ss 141 (141)
|+||||+|||+||++|+++
T Consensus 104 LaKhAvseGtkAV~ky~ss 122 (123)
T 2nqb_D 104 LAKHAVSEGTKAVTKYTSS 122 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCC
Confidence 9999999999999999875
No 2
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=3.2e-55 Score=331.83 Aligned_cols=99 Identities=80% Similarity=1.128 Sum_probs=91.0
Q ss_pred ccccccccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 43 KKKRTKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 43 ~kk~~k~r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
+++++++|.++|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||||
T Consensus 27 ~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 27 DKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp -------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred CCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhhhhhhhcccCC
Q 032404 123 LAKHAVSEGTKAVTKFTSS 141 (141)
Q Consensus 123 LaKhAvseGtkAV~ky~ss 141 (141)
|+||||+|||+||++|+++
T Consensus 107 LaKhAvseGtkAV~ky~ss 125 (126)
T 1tzy_B 107 LAKHAVSEGTKAVTKYTSS 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCC
Confidence 9999999999999999875
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.2e-39 Score=258.40 Aligned_cols=91 Identities=73% Similarity=1.083 Sum_probs=88.7
Q ss_pred cchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHH
Q 032404 50 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 129 (141)
Q Consensus 50 r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKhAvs 129 (141)
|+++|++||||||||||||++||++||++||+|++|||+||+.||++|++||+|+|||+||||+||||+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccC
Q 032404 130 EGTKAVTKFTS 140 (141)
Q Consensus 130 eGtkAV~ky~s 140 (141)
||++||++|++
T Consensus 81 eG~kAv~k~~~ 91 (192)
T 2jss_A 81 EGTRAVTKYSS 91 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999999953
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.68 E-value=6.7e-17 Score=111.00 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032404 55 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLP 120 (141)
..+|+|++||+|||.+||.+|+.+|+.+++++++.|+.||..++++++|+||+.+||+.|++.+|-
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999999998873
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.11 E-value=1.6e-10 Score=76.79 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=58.3
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
=|.|++|++ ++..||+.|+..|...+.++++.|+.+|..++.+++|+||+.+|||.|++.|
T Consensus 7 ~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 378999999 8899999999999999999999999999999999999999999999999865
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.89 E-value=2.8e-09 Score=82.52 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=61.1
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLP 120 (141)
=|.|++|+. ....||+.|...|..++.++.+.|+.+|..++++++|+||+.+||+.|++..||
T Consensus 87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 389999998 778999999999999999999999999999999999999999999999999999
No 7
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.40 E-value=6.8e-07 Score=64.30 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
-.|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 469999999876 68999999999999999999999999999999999999999999999965
No 8
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.38 E-value=7.8e-07 Score=63.91 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 55 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
.-.|.|+++..-. ..||..+..-|..++.++++.|+.+|..++++++|+|||.+||+.|++-+
T Consensus 32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3479999999876 68999999999999999999999999999999999999999999999965
No 9
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.35 E-value=1.2e-06 Score=58.48 Aligned_cols=59 Identities=14% Similarity=0.330 Sum_probs=55.4
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
-|.|++|+. ....||..+..-|..++.++++.|+.+|..++.+.+|+||+.+||+.|++
T Consensus 11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 588999987 46899999999999999999999999999999999999999999999975
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.16 E-value=4.7e-06 Score=60.07 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 55 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
.-.|.|+++..-. ..||..+...|..++.++++.|+.||..++++.+|+|||..||..|++.+
T Consensus 31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3479999998754 78999999999999999999999999999999999999999999999854
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.16 E-value=8.5e-06 Score=57.04 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=56.8
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
-|.|+.|+.-|| ..||.+|...|......+...|+.+|...+...+|+||+..||+.|++
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 488999999775 789999999999999999999999999999999999999999999998
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.06 E-value=6.5e-06 Score=57.10 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
-.|.|+.+..-. ..||..+...|..++...++.|+.+|..++++.+|+|||..||..|++-+
T Consensus 14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 358899998754 78999999999999999999999999999999999999999999998754
No 13
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.03 E-value=1.4e-05 Score=58.44 Aligned_cols=61 Identities=10% Similarity=0.219 Sum_probs=56.8
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
..|.|+.+.. ....||..+...|..++.++++.|+.+|..++++.+|+||+..||..|++-
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4688888877 679999999999999999999999999999999999999999999999884
No 14
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.02 E-value=2.1e-05 Score=62.18 Aligned_cols=63 Identities=16% Similarity=0.327 Sum_probs=59.2
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
.=|.|++|++-|+..||.+|...|...+..+..-|+.+|..++...+|+||+..||..|+.-+
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 458999999999999999999999999999999999999999999999999999999998743
No 15
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.96 E-value=2.9e-05 Score=57.93 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=57.7
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
-|.|++|++-|| ..||..|...|.....-+...|+.+|..++...+|+||+..||..|+.-+
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 389999998875 78999999999999999999999999999999999999999999999864
No 16
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.92 E-value=3e-05 Score=57.67 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=58.7
Q ss_pred hHH-HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYK-IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|. ..|+|+|++..--..||..|...|...+..+...|.+.|...++.+++.+|+.|+||.|++
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 354 3899999998555699999999999999999999999999999999999999999999999
No 17
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.90 E-value=3.4e-05 Score=57.19 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=58.9
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|.. .|+|+|++..--..||..|-..|...+..+...|.+.|...++.+++.+|+.|+||.||+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3544 799999998766789999999999999999999999999999999999999999999999
No 18
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.87 E-value=3.9e-05 Score=57.58 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|.. .|+|+|++..--..||..|...|...+..+...|.+.|...++.+++.+|+.|+||.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3544 799999997555699999999999999999999999999999999999999999999999
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.87 E-value=3.9e-05 Score=59.24 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=57.8
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-|-|++|+.-|+..||..|-.-|...+..+.+-|+.+|..++.+.+|+||+..||..|+.-
T Consensus 9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 3789999998999999999999999999999999999999999999999999999999944
No 20
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.85 E-value=3.5e-05 Score=57.97 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=58.6
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|.. .|+|+|++..--..||..|...|...+..+...|.+.|...++.+++.+|+.|+||.||+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4544 899999997555699999999999999999999999999999999999999999999999
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.83 E-value=7.4e-05 Score=50.97 Aligned_cols=60 Identities=10% Similarity=0.231 Sum_probs=53.4
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
.|.++.+++.= ..+|.++-..|-.-+.+....|+.||.+++++.+|+|||..||..|+++
T Consensus 11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 47777777643 4789999999999999999999999999999999999999999999874
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.79 E-value=5.2e-05 Score=58.36 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=58.7
Q ss_pred hHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|.. .|+|+||+..--..|+..|...|...+.++...|.+.|...++.+++.+|+.|+||.||+
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 3544 799999998655699999999999999999999999999999999999999999999999
No 23
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.76 E-value=7.7e-05 Score=52.81 Aligned_cols=60 Identities=22% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
=|.|++|.- || ..||..|.-.|.-.+..+...|+.+|...++.++|+||+.+||+.||+-
T Consensus 24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 489999986 77 5699999999999999999999999999999999999999999999863
No 24
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.69 E-value=9.2e-05 Score=55.44 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=57.9
Q ss_pred hHHH-HHHHHhhhhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 53 TYKI-YIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 53 sy~~-YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
.|-. .|+|+|+...- ...||..|...|...+..+...|.+.|...++.+++.+|+.|+||-||+
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4544 79999999864 3589999999999999999999999999999999999999999999998
No 25
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.67 E-value=9.7e-05 Score=54.26 Aligned_cols=59 Identities=25% Similarity=0.226 Sum_probs=53.9
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
=|.|++|.. || ..||..|.-+|.-.+.-+...|+.+|...++.++|+||+.+||+.||+
T Consensus 46 RIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 46 RIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 499999976 55 678999999999888889999999999999999999999999999996
No 26
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.59 E-value=0.00037 Score=48.25 Aligned_cols=60 Identities=17% Similarity=0.369 Sum_probs=56.1
Q ss_pred HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
-+...++||-|...+...+..+|-.+.+|+.+.+.+.|++||++.+-.||..+|||....
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999998665
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.59 E-value=0.00044 Score=46.83 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=56.0
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 119 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlL 119 (141)
..|.++||...- ..+|..+...|-.|+......|+.+|..++.+.+|+||+..||+.|++..+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 468889988533 477999999999999999999999999999999999999999999998654
No 28
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.58 E-value=0.00036 Score=48.37 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=58.1
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 52 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 52 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-.|...|..+..+..+|..+++.|+..|.....+..-.+.+++..++.+.+|.||..+|||-|.|+
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 346666666666667789999999999999999999999999999999999999999999999986
No 29
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.50 E-value=0.00011 Score=52.27 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=51.2
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
=|.|++|. .|| ..||..|.-.|.-....+.+.|+.+|...++.++|+||+.+||+.||+
T Consensus 16 RIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 16 RIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 48999997 566 679999999999999999999999999999999999999999999986
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.46 E-value=0.0002 Score=53.02 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 57 YIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 57 YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-|.|+++++-. ++.+|.+++.-|..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 46778877743 57899999999999999999999999999999999999999999999873
No 31
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.42 E-value=0.00039 Score=54.63 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=60.8
Q ss_pred hHHH-HHHHHhhhhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHH
Q 032404 53 TYKI-YIFKVLKQVHP-DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 125 (141)
Q Consensus 53 sy~~-YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaK 125 (141)
.|.. .|+|.||+..- ...|+..|...|...+..+...|.+.|...++.+++.+|++++||.|++ -..||..
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~--nD~eL~~ 177 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR--GDDELDS 177 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH--TSHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh--ccHHHHH
Confidence 4543 79999999744 3589999999999999999999999999999999999999999999999 3445543
No 32
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00056 Score=48.63 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 58 IFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 58 IyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
|-++..++-+ +..+|..++.-|..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5566666644 36689999999999999999999999999999999999999999998873
No 33
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.34 E-value=0.00035 Score=51.07 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHhhhhcC--CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 56 IYIFKVLKQVHP--DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 56 ~YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
..|-|+++++-- +..+|.+++..|..|+.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus 23 ~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 23 YTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 346677777643 57899999999999999999999999999999999999999999999884
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.0014 Score=45.84 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 52 ETYKIYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 52 esy~~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
-.|...|..+-.+.. .|..+++.|+..|-.-..+..-.+.+++..++.+.+|.||..+|||-|.|+-
T Consensus 7 lPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 7 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 345555665655554 4689999999999999999999999999999999999999999999999973
No 35
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.27 E-value=0.0012 Score=50.20 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 53 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 53 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-|...|..+..+..+|..+++.|+..|.....+.+-.|.+++..++.+.+|.||..+|||-|.|+
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 34555555555556899999999999999999999999999999999999999999999999986
No 36
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.20 E-value=0.0013 Score=47.45 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhhhcC---CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 52 ETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 52 esy~~YIyKVLKQVhp---d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-.|...|..+..+..+ |..+++.|+..|.....+.+-.+.+++..++.+.+|.||..+|||-|.|+
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 4566666666666555 78999999999999999999999999999999999999999999999885
No 37
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.15 E-value=0.0015 Score=61.65 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred chhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHHh
Q 032404 51 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 130 (141)
Q Consensus 51 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKhAvse 130 (141)
..-|-.-|+|||.||||+++|..+|+.-+++++-.++-.|+. ....|..|++..|.-.||+.|.++|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIAD 89 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence 456888899999999999999999999999999888877764 4688999999999999999999999999
Q ss_pred hhhhh
Q 032404 131 GTKAV 135 (141)
Q Consensus 131 GtkAV 135 (141)
+-.++
T Consensus 90 ~~~~~ 94 (1049)
T 3ksy_A 90 AQSAI 94 (1049)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 86664
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.07 E-value=0.00081 Score=51.46 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 58 IFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 58 IyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
|-|+.+++- .++.+|.+++..|..|+.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 445555552 357899999999999999999999999999999999999999999999884
No 39
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0013 Score=49.11 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 69 IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 69 ~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-.||..+..-+...++++++.|+.+|..++.+.+|+|||..||.-|++.
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999874
No 40
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.89 E-value=0.0041 Score=47.49 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 54 YKIYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 54 y~~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
|...|..+-.+.. .|..+++.|+..|-....+.+-.|.++|..++.+.+|.||..+|||-|.|+-
T Consensus 67 F~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 67 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 4444444443333 3688999999999998899889998999999999999999999999999974
No 41
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.0039 Score=48.46 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=51.8
Q ss_pred HHHHhhhhc------CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 58 IFKVLKQVH------PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 58 IyKVLKQVh------pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
|-|+++++- .|..+++.|+..|-....+++-.|.++|..++.+.+|.||..+|||-|.||-
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 344555543 3678999999999998889888998999999999999999999999999973
No 42
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.84 E-value=0.0023 Score=48.40 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHh-hhcCCCCcChHHHHHHHH
Q 032404 57 YIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLA-RYNKKPTITSREIQTAVR 116 (141)
Q Consensus 57 YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La-~~nkk~TltsreIqtAVr 116 (141)
=|.|++|.- || ..||..|.-+|.-.+.-+...|+.+|...+ +.++|+||+.++|..||+
T Consensus 24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 488999886 77 568999998888888888889999999999 999999999999999997
No 43
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0081 Score=49.30 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 69 IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 69 ~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||.-|++..
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999854
No 44
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=90.35 E-value=0.82 Score=37.42 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=52.7
Q ss_pred cchhHHHHHHHHhhhhcC---CCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 50 SIETYKIYIFKVLKQVHP---DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 50 r~esy~~YIyKVLKQVhp---d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
++-.|+..+..+..+..+ |+.+.+.|+.-|..-..+.+-.+=+.+.-.+.+.+|-||..+|||-|-|+
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 456788888888877665 78999999877765444444444456777788999999999999999986
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=88.53 E-value=2 Score=29.60 Aligned_cols=58 Identities=9% Similarity=0.195 Sum_probs=40.7
Q ss_pred HHHHHHhhhhcC--CCCcchHHHHHHH----HHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 56 IYIFKVLKQVHP--DIGISSKAMGIMN----SFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 56 ~YIyKVLKQVhp--d~gISskAm~Imn----SfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
.-|.|+|++.+. .+.|++.|+..+. -||+.-+.|-+.+| .-.....|...+++.-.-+
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHHHHH
Confidence 358899999877 5999999988754 45555555555554 4456678999998874433
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=88.43 E-value=3.2 Score=28.89 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=50.8
Q ss_pred HHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhc-CCCCcChHHHHHHHHhhC
Q 032404 58 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN-KKPTITSREIQTAVRLVL 119 (141)
Q Consensus 58 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~n-kk~TltsreIqtAVrLlL 119 (141)
|.|+..++. +.++|....-+|..+-.-+.-.|.++|..+.... ....|..+.|+.|+|.+-
T Consensus 22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 777777775 7899998888888888888889999999887654 455999999999999764
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=88.20 E-value=2.6 Score=29.36 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=41.3
Q ss_pred HHHHHHhhhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhh
Q 032404 56 IYIFKVLKQVH--PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLV 118 (141)
Q Consensus 56 ~YIyKVLKQVh--pd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLl 118 (141)
--|.|+|++-+ .++.||..|+.++.-+++=+.......|...+.-....+|+..+++.-.-+|
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 35899999876 4599999998886555533333333333334444566789999988754433
No 48
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=86.00 E-value=2.1 Score=40.43 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=52.0
Q ss_pred hhHHH-HHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 52 ETYKI-YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 52 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
-.|-. -|+|.||..+- -.|+..|.--|...+..+.-.|-+-|..-++.+++..|+.|+||.|++-
T Consensus 103 l~~pv~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 103 LSLPVEKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp CSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccccHHHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 34543 68899965554 5899999888888887777777777888888999999999999999963
No 49
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=74.04 E-value=5.5 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 85 DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 85 DiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
-=++.|+.||+..+-...+..|+..|+..|++-+.|+
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 3346788899998888888899999999999999996
No 50
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=73.08 E-value=5 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHH
Q 032404 87 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 124 (141)
Q Consensus 87 ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELa 124 (141)
+..|+.||+-.+-......|+..|+..|++-+.||-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 46788888888877778899999999999999998544
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=70.57 E-value=5.4 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 87 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 87 ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
++.|+.||+..+-...+..|+..|++.|++-+++|.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 356788888888887888999999999999997664
No 52
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.56 E-value=4.9 Score=35.48 Aligned_cols=65 Identities=26% Similarity=0.407 Sum_probs=47.9
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHH------------------HHHHHHHHhHHhhhcCCCCcChHHHHHH
Q 032404 53 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI------------------FEKLAQESSRLARYNKKPTITSREIQTA 114 (141)
Q Consensus 53 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDi------------------ferIA~EAs~La~~nkk~TltsreIqtA 114 (141)
....||..+-..++| .+|.++...|..+..++ ++.|..-|.-+|....+.+++..|+..|
T Consensus 506 ~l~~~i~~ar~~~~p--~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~A 583 (595)
T 3f9v_A 506 TLRKYIAYARKYVTP--KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERA 583 (595)
T ss_dssp TTHHHHHHHHHHHCC--CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 345555555455677 67777777777765442 5677777888888899999999999999
Q ss_pred HHhhC
Q 032404 115 VRLVL 119 (141)
Q Consensus 115 VrLlL 119 (141)
++|+.
T Consensus 584 i~l~~ 588 (595)
T 3f9v_A 584 INIMR 588 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.47 E-value=14 Score=28.55 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=44.3
Q ss_pred cCCCCcchHHHHHHHHHHHH-------HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032404 66 HPDIGISSKAMGIMNSFIND-------IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 123 (141)
Q Consensus 66 hpd~gISskAm~ImnSfvnD-------iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGEL 123 (141)
.++..||..++..+..+... -...+..-|..++....+.+|+..+|..|+.++|..-+
T Consensus 263 ~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 263 LPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 34568999998887776553 34466666777777788889999999999999887543
No 54
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=67.56 E-value=5 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 86 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 86 iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
=++.|+.||+-.+-......|+..|++.|+.-+.|+
T Consensus 49 DL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 49 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 345688899888877778899999999999998886
No 55
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.87 E-value=15 Score=26.68 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHHHh
Q 032404 82 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 130 (141)
Q Consensus 82 fvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKhAvse 130 (141)
|=.++|++|..|.-.. +-||.-.|- -||=+-|-||+.|+.|
T Consensus 43 ~Dk~t~dkl~KEVpk~------KlITpsvls--eRlkI~gSLAR~aLre 83 (108)
T 3iz6_V 43 FDKATYDKLLSEVPKY------KQITPSVLS--ERLRINGSLARQAIKD 83 (108)
T ss_dssp HSSHHHHHHHHHHHHH------SSEEEHHHH--HHHHTCCHHHHHHHHH
T ss_pred ECHHHHHHHHHHccCC------eEEeHHHHH--hhhcccHHHHHHHHHH
Confidence 4466778887777652 356665543 3555778888877765
No 56
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=62.90 E-value=8 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 86 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 86 iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
=++.|+.||+..+-......|+..|+..|++-++.+
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 346788899988888888999999999999877653
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=56.12 E-value=69 Score=24.86 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHH
Q 032404 53 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 128 (141)
Q Consensus 53 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvn----DiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKhAv 128 (141)
....++.+.+.+. +..++..++..+-.+.. .-...+...|..++..+.+.+||..+|+.|+.+++...-....+
T Consensus 263 e~~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~ 340 (368)
T 3uk6_A 263 DTKQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYM 340 (368)
T ss_dssp HHHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHH
Confidence 3344555555542 35688888877666654 13345667777788788889999999999999988765554444
Q ss_pred Hh
Q 032404 129 SE 130 (141)
Q Consensus 129 se 130 (141)
.+
T Consensus 341 ~~ 342 (368)
T 3uk6_A 341 KE 342 (368)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=55.45 E-value=71 Score=27.72 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhc---CCCCcchHHHHHHHHHHH-------------HHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 54 YKIYIFKVLKQVH---PDIGISSKAMGIMNSFIN-------------DIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 54 y~~YIyKVLKQVh---pd~gISskAm~ImnSfvn-------------DiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
...|+..+.++.. ....++..|+..|-.+-. .-++.|..+|..+|+...+..|+..+|+.|++.
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 295 RRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4445544444443 446899999887766432 234467778888999889999999999999965
No 59
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=53.77 E-value=41 Score=22.07 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcCCCCcchHHHHHHHHHHHHH---------HHHHHHHHhHHhhhcCCCC
Q 032404 56 IYIFKVLKQVHPDIGISSKAMGIMNSFINDI---------FEKLAQESSRLARYNKKPT 105 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDi---------ferIA~EAs~La~~nkk~T 105 (141)
..++.+..|..-+ .+|..-+..|+.+++|. =..+..+|.+.+-.+++..
T Consensus 2 ~~~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 2 NAIRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp HHHHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred chHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 3567777777335 88998899999999887 5778888888886665443
No 60
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=52.96 E-value=22 Score=24.99 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=38.4
Q ss_pred HHHHhhhh--cCCCCcchHHHHH----HHHHHHHHHHHHHHHHhHHhh---hcCCCCcChHHHHHHHHhhCchH
Q 032404 58 IFKVLKQV--HPDIGISSKAMGI----MNSFINDIFEKLAQESSRLAR---YNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 58 IyKVLKQV--hpd~gISskAm~I----mnSfvnDiferIA~EAs~La~---~nkk~TltsreIqtAVrLlLPGE 122 (141)
|-|+|.+- .+++.||.+|+.. |+-||+.-+-|-.++.-.+.. ...-..|+..|+..=+.|||-.-
T Consensus 7 laRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGlL~~~~ 80 (88)
T 3v9r_B 7 LIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLLMDM 80 (88)
T ss_dssp HHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHHHHHHH
Confidence 56777755 4569999999887 455555555555544433222 12224788888888888877543
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.78 E-value=78 Score=24.17 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 54 YKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 54 y~~YIyKVLKQVhpd~gISskAm~ImnSfvn----Di--ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
...++...+.+...+..++..++..+..+.. |+ ...+...|..++......+|+..+|+.|+..+.+.
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 4445555666566667888888877766664 11 23477788888877778899999999988776543
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=51.28 E-value=80 Score=24.17 Aligned_cols=69 Identities=6% Similarity=0.036 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----H--HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032404 52 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----D--IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120 (141)
Q Consensus 52 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvn----D--iferIA~EAs~La~~nkk~TltsreIqtAVrLlLP 120 (141)
+....++.+.+.+...+..++..++..+..+.. | ....+...|..++......+|+..+|..|+..+..
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 204 PQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 344556666666555567788888887777765 2 23466677777777777789999999999876643
No 63
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.05 E-value=43 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 89 KLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 89 rIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
.+..-|..++..+.+..++..||+.+++.+|..-
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 4455566677888989999999999999998643
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=46.39 E-value=25 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 87 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 87 ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
++.+..+|..++....+.+|+..++..|++.++-|
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 35677788888888888999999999999987754
No 65
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=46.20 E-value=51 Score=24.66 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 86 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 86 iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
-.+.+..+|...+....+.+|+..+|+.|++.+++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 345578888888888888999999999999988754
No 66
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=38.54 E-value=51 Score=28.61 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch-----------HHHHhHHHhhhhhhhc
Q 032404 87 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG-----------ELAKHAVSEGTKAVTK 137 (141)
Q Consensus 87 ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG-----------ELaKhAvseGtkAV~k 137 (141)
++.+..+|..++....+..|+..|++.|+.-+++| |...-|+-|.-.||..
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~ 301 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA 301 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHH
Confidence 35667788878777777899999999999998876 2344556565555543
No 67
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=36.88 E-value=46 Score=26.06 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032404 52 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 119 (141)
Q Consensus 52 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlL 119 (141)
.....+|.+.+++- +..|+.+|...+-..++.=+..+..|--+|+.|....+||..+|+..+-...
T Consensus 145 ~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 145 AQLPRWVAARAKQL--NLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp THHHHHHHHHHHHT--TCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 45566777777764 4679999999988888777778888888888886556899999988766544
No 68
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=36.53 E-value=85 Score=25.11 Aligned_cols=69 Identities=7% Similarity=0.264 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHhhhhcCC-CCcchHHHHHHHHHHHHHHHHHHHHHhHHhh------------------hcCCCCcChHH
Q 032404 50 SIETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQESSRLAR------------------YNKKPTITSRE 110 (141)
Q Consensus 50 r~esy~~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~------------------~nkk~Tltsre 110 (141)
+...|...+.+++-.+--| +.+|++.-.++. ++|+|-.++..-..++. +|+...||..|
T Consensus 56 ~dp~fR~~F~~mc~siGVDPLa~s~kg~~~lg--~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dD 133 (233)
T 1u5t_A 56 ASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFT--VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDD 133 (233)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHTTSSGGGTT--HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCccCCccccccC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHH
Confidence 3567888888888777666 222332222222 26666666655555443 33446899999
Q ss_pred HHHHHHhhCc
Q 032404 111 IQTAVRLVLP 120 (141)
Q Consensus 111 IqtAVrLlLP 120 (141)
|..|+..|=|
T Consensus 134 i~rAik~L~~ 143 (233)
T 1u5t_A 134 LEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhh
Confidence 9999997644
No 69
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.26 E-value=34 Score=29.32 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 82 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 82 fvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
|.--=++.|+.||.-++-..++..||..|++.|++-++|+.
T Consensus 353 ~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 353 CSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 33333578899999998888889999999999999988853
No 70
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=32.60 E-value=62 Score=21.90 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhC
Q 032404 81 SFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 119 (141)
Q Consensus 81 SfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlL 119 (141)
-++|.|+-.+..||.+|..-. ..+..||..|+++-+
T Consensus 18 fi~nRll~~~~~eA~~ll~eG---va~~~dID~a~~~g~ 53 (110)
T 3ctv_A 18 INPMDFTFVEINEAVKLVEMG---VATPQDIDTAIKLGL 53 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHcC
Confidence 467788889999999998743 349999999999643
No 71
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.54 E-value=40 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchH
Q 032404 82 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 122 (141)
Q Consensus 82 fvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGE 122 (141)
|.--=++.|+.||.-++-...+..||..|+..|++-++|+.
T Consensus 387 fSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 387 LSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 44434578889999999888889999999999999888863
No 72
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.69 E-value=59 Score=20.53 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhcCCCCcc-hHHHHHHHHHHHHHHHHHHHHHh
Q 032404 55 KIYIFKVLKQVHPDIGIS-SKAMGIMNSFINDIFEKLAQESS 95 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gIS-skAm~ImnSfvnDiferIA~EAs 95 (141)
..-..+..++.|||..-+ ..+...+ ..|+.-|+-|.....
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f-~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKF-SQLAEAYEVLSDEVK 65 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHH-HHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHHH
Confidence 344567788999997553 2332222 234445554444433
No 73
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=31.36 E-value=1.2e+02 Score=20.60 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHhHH
Q 032404 50 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 128 (141)
Q Consensus 50 r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKhAv 128 (141)
.+|.|..|+-|.++.+--+.+ +..+-++ +..+++-.-|.+-.+-.-..=.++.+ +||||-||-+
T Consensus 11 PkEPF~dfVdRl~kal~~e~~-~~~vk~~---m~~tLl~QNANpdCk~ilk~l~~~~~-----------~~~e~ik~~~ 74 (77)
T 3g21_A 11 PSESFVDFANRLIKAVEGSDL-PPSARAP---VIIDCFRQKSQPDIQQLIRTAPSTLT-----------TPGEIIKYVL 74 (77)
T ss_dssp TTCCHHHHHHHHHHHHHTSSS-CHHHHHH---HHHHHHHHHSCHHHHHHHTTSCTTCC-----------SHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhhC-hHHHHHH---HHHHHHHHhcCHHHHHHHHhCCCCCC-----------CHHHHHHHHH
Confidence 468999999999998865544 3333222 33344443333333322223333433 5677777643
No 74
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=31.35 E-value=37 Score=26.52 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.7
Q ss_pred ccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHH---HHHHHHHHhHHh
Q 032404 49 KSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI---FEKLAQESSRLA 98 (141)
Q Consensus 49 ~r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDi---ferIA~EAs~La 98 (141)
-|..+|++-+|-..+|-|||+... .+|++||.-| ||+==.||..+.
T Consensus 95 ~RIVsfaT~FF~~yq~qhPd~~~e----e~L~~Fm~lIgGGiEqGF~EArdIL 143 (175)
T 3sjr_A 95 QHLLLGMEILMELYRQQHPDWTAP----AIRQAFAPLARAGLERGYQEACQVL 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 357899999999999999998765 5688888666 455556666543
No 75
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.46 E-value=1.9e+02 Score=22.30 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHH----HH--HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCc
Q 032404 52 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN----DI--FEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120 (141)
Q Consensus 52 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvn----Di--ferIA~EAs~La~~nkk~TltsreIqtAVrLlLP 120 (141)
+....++.+.+.+..++..++..++..+..+.. |+ ...+...|..++. ...+|+..+|..|+..+..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 334455556666556667888888877666654 11 1234455555554 5578999999998876643
No 76
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.34 E-value=75 Score=25.49 Aligned_cols=68 Identities=10% Similarity=0.182 Sum_probs=39.7
Q ss_pred chhHHHHHHHHhhhhcCCCCcchHH--HHHHHHHHHHHHHHHHHHHhHHhhh------------------cC-----CCC
Q 032404 51 IETYKIYIFKVLKQVHPDIGISSKA--MGIMNSFINDIFEKLAQESSRLARY------------------NK-----KPT 105 (141)
Q Consensus 51 ~esy~~YIyKVLKQVhpd~gISskA--m~ImnSfvnDiferIA~EAs~La~~------------------nk-----k~T 105 (141)
...|...+.+++-.+--|---|++. -.++. ++|++-.+|.+-..++.. |+ ...
T Consensus 37 dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG--~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~ 114 (234)
T 3cuq_A 37 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLG--VGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQD 114 (234)
T ss_dssp CHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSS
T ss_pred CHHHHHHHHHHHHHcCCCcccCCcchhhhhcC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCc
Confidence 5678888888888877772223331 01111 245555555444433322 21 168
Q ss_pred cChHHHHHHHHhhCc
Q 032404 106 ITSREIQTAVRLVLP 120 (141)
Q Consensus 106 ltsreIqtAVrLlLP 120 (141)
||..||..|+..|=|
T Consensus 115 IS~dDi~rAik~L~~ 129 (234)
T 3cuq_A 115 VSQDDLIRAIKKLKA 129 (234)
T ss_dssp CCHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999997744
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.13 E-value=41 Score=29.49 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 86 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 86 iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
=++.|+.||..++-...+..||..|+..|+.-+++|
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 346788999998888888999999999999988876
No 78
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.82 E-value=66 Score=24.33 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhh--------cCC--CCcchHHHHHHHHHHHHHHHHHH
Q 032404 54 YKIYIFKVLKQV--------HPD--IGISSKAMGIMNSFINDIFEKLA 91 (141)
Q Consensus 54 y~~YIyKVLKQV--------hpd--~gISskAm~ImnSfvnDiferIA 91 (141)
...-|.++|.|. +++ -.||++.++.||.+...|++.||
T Consensus 99 sg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~~~ 146 (146)
T 3iz6_S 99 SGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVTIA 146 (146)
T ss_dssp CHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHhhC
Confidence 456677777774 564 37999999999999999887663
No 79
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=29.31 E-value=64 Score=26.00 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=18.7
Q ss_pred hcCCCCcChHHHHHHHHhhCchHH
Q 032404 100 YNKKPTITSREIQTAVRLVLPGEL 123 (141)
Q Consensus 100 ~nkk~TltsreIqtAVrLlLPGEL 123 (141)
.++.-+|+-+|+..|.-++.-|.|
T Consensus 143 ~~~~G~I~f~ef~~aLs~l~rG~l 166 (261)
T 1eg3_A 143 TGRTGRIRVLSFKTGIISLCKAHL 166 (261)
T ss_dssp TTCCSEEEHHHHHHHHHHTSSSCH
T ss_pred CCCCceEeHHHHHHHHHHHcCCCH
Confidence 366778899999998888877644
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=28.82 E-value=1.1e+02 Score=21.00 Aligned_cols=60 Identities=5% Similarity=0.144 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHH
Q 032404 53 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 115 (141)
Q Consensus 53 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAV 115 (141)
....|+...+.+. +..++..++..+-....-....+-..+-.++.+.. .+||..+|..++
T Consensus 189 e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~ 248 (250)
T 1njg_A 189 QIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHT--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHS
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHh
Confidence 3444555555542 34567666655444433333333333333344443 488888888765
No 81
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=28.71 E-value=2.2e+02 Score=25.40 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHH---------------------HHHHHHhHHhhhcCCCCcChHH
Q 032404 52 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE---------------------KLAQESSRLARYNKKPTITSRE 110 (141)
Q Consensus 52 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDife---------------------rIA~EAs~La~~nkk~Tltsre 110 (141)
+.+..||.-+= +.+..-.+|..+...+..++..+=. .|..-|--+|+...+..++..|
T Consensus 397 e~L~~yi~~ar-~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eD 475 (506)
T 3f8t_A 397 TLLRRYLLYAI-REHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPED 475 (506)
T ss_dssp HHHHHHHHHHH-HHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHHHHHH-hcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHH
Confidence 34455555442 1222235666666666655544421 2233344567888899999999
Q ss_pred HHHHHHhhC
Q 032404 111 IQTAVRLVL 119 (141)
Q Consensus 111 IqtAVrLlL 119 (141)
|+.|++|+.
T Consensus 476 V~~Ai~L~~ 484 (506)
T 3f8t_A 476 VDIAAELVD 484 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 82
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=27.12 E-value=1.5e+02 Score=20.18 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHH
Q 032404 54 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 116 (141)
Q Consensus 54 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVr 116 (141)
...++.+.+.+.. ..++..++..+-.....-...+......++.+. .+||..+|+.++.
T Consensus 166 ~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 166 MKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3445555555432 347777766555444433344444444445444 6899999998876
No 83
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.58 E-value=89 Score=19.63 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhcCCCCcchHH
Q 032404 55 KIYIFKVLKQVHPDIGISSKA 75 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISskA 75 (141)
..-..+..++.|||..-...+
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~ 45 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGA 45 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHH
T ss_pred HHHHHHHHHHHCcCCCCCccH
Confidence 334567788999998765433
No 84
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=26.30 E-value=98 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhcCCCCcchH
Q 032404 55 KIYIFKVLKQVHPDIGISSK 74 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISsk 74 (141)
..-..+..++.|||..-...
T Consensus 35 k~ayr~l~~~~HPDk~~~~~ 54 (88)
T 2cug_A 35 KKAYKKLAREWHPDKNKDPG 54 (88)
T ss_dssp HHHHHHHHHHSCTTTCCSTT
T ss_pred HHHHHHHHHHHCcCCCCChh
Confidence 34456778899999765543
No 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.80 E-value=22 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHH
Q 032404 86 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 123 (141)
Q Consensus 86 iferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGEL 123 (141)
-...+..+|...+....+.+|+..++..|+.-++|+.-
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 34566777777777777889999999999999888754
No 86
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=25.26 E-value=5.4 Score=29.98 Aligned_cols=33 Identities=39% Similarity=0.686 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHh
Q 032404 84 NDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 117 (141)
Q Consensus 84 nDiferIA~EAs~La~~nkk~TltsreIqtAVrL 117 (141)
+||||+|.-++++|..|-- --|+---||.+.|+
T Consensus 102 ~~iFE~IGiDssKleKYYd-~FL~yyRiQe~~~~ 134 (136)
T 2rp5_A 102 NDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134 (136)
T ss_dssp SCHHHHHTCCGGGHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHhcccHHHHHHHHH-HHHHHHHHHHhccC
Confidence 6899999999999998864 34555567777664
No 87
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.42 E-value=1e+02 Score=19.95 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHhhhhcCCCCcchHH
Q 032404 56 IYIFKVLKQVHPDIGISSKA 75 (141)
Q Consensus 56 ~YIyKVLKQVhpd~gISskA 75 (141)
.-..+..++.|||..-+..+
T Consensus 26 ~ayr~l~~~~HPDk~~~~~a 45 (88)
T 2ctr_A 26 KAFHKLAMKYHPDKNKSPDA 45 (88)
T ss_dssp HHHHHHHHHTCTTTCCSHHH
T ss_pred HHHHHHHHHHCcCCCCChHH
Confidence 34567788999997665443
No 88
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=23.88 E-value=1.8e+02 Score=23.12 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=39.3
Q ss_pred ccccchhHHHHHHHHhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCchHHHHh
Q 032404 47 TKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH 126 (141)
Q Consensus 47 ~k~r~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPGELaKh 126 (141)
+...+|.|..|+-|.++.+--..+ +..+-. -++.+++-.=|.+-++-.-..-.++++ +||||-|+
T Consensus 157 ~QGp~Epf~dfv~rl~~a~~~~~~-~~~~~~---~~~~~l~~qNAN~~ck~il~~~~~~~~-----------~~~e~i~~ 221 (226)
T 3tir_A 157 MQGPSESFVDFANRLIKAVEGSDL-PPSARA---PVIIDCFRQKSQPDIQQLIRTAPSTLT-----------TPGEIIKY 221 (226)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTSSS-CHHHHH---HHHHHHHHHHSCHHHHHHHHTSCTTCC-----------SHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHcC-cHHHHH---HHHHHHHHHhCCHHHHHHHHhCCCCCC-----------ChHHHHHH
Confidence 444579999999999998865443 323322 245555555555555544444445554 56666665
Q ss_pred H
Q 032404 127 A 127 (141)
Q Consensus 127 A 127 (141)
-
T Consensus 222 ~ 222 (226)
T 3tir_A 222 V 222 (226)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=23.26 E-value=1e+02 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=17.8
Q ss_pred CCCcChHHHHHHHHhhCchHHHHhHHHhh
Q 032404 103 KPTITSREIQTAVRLVLPGELAKHAVSEG 131 (141)
Q Consensus 103 k~TltsreIqtAVrLlLPGELaKhAvseG 131 (141)
+.+|+..|+..++..++ +....++.+|
T Consensus 59 ~~~lsk~da~~vl~~l~--~~i~~~L~~G 85 (204)
T 2iie_A 59 KLGLSKRDAKELVELFF--EEIRRALENG 85 (204)
T ss_dssp HHCCCHHHHHHHHHHHH--HHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHH--HHHHHHHhCC
Confidence 45778888888887766 4445555555
No 90
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=23.00 E-value=1.3e+02 Score=20.93 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.9
Q ss_pred cchhHHHHHHHHhhhhcC
Q 032404 50 SIETYKIYIFKVLKQVHP 67 (141)
Q Consensus 50 r~esy~~YIyKVLKQVhp 67 (141)
.+|.|..|+-|.++.+--
T Consensus 10 PkEPF~dfVdRl~kal~~ 27 (87)
T 3g1g_A 10 PSESFVDFANRLIKAVEG 27 (87)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 368999999999998744
No 91
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.39 E-value=71 Score=27.38 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 82 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 82 fvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
|.--=++.|+.||..++-.+.+..|+..|+..|+.-+.|.
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 3333457788999998888888999999999999998884
No 92
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.20 E-value=1.5e+02 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=12.9
Q ss_pred HHHHHHHhhhhcCCCCcc
Q 032404 55 KIYIFKVLKQVHPDIGIS 72 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gIS 72 (141)
..-..+..++.|||..-+
T Consensus 27 k~ayr~l~~~~HPDk~~~ 44 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPD 44 (92)
T ss_dssp HHHHHHHHHHTCTTTCSS
T ss_pred HHHHHHHHHHHCCCCCCc
Confidence 344567788999997654
No 93
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=22.18 E-value=17 Score=21.81 Aligned_cols=10 Identities=50% Similarity=0.524 Sum_probs=8.1
Q ss_pred HHHhhhhcCC
Q 032404 59 FKVLKQVHPD 68 (141)
Q Consensus 59 yKVLKQVhpd 68 (141)
-++||||||-
T Consensus 27 g~elkqitpp 36 (38)
T 3mn5_S 27 GKELKQITPP 36 (38)
T ss_pred cccccccCCC
Confidence 4789999984
No 94
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.92 E-value=84 Score=26.94 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 82 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 82 fvnDiferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
|.--=+..|+.||.-++-...+..|+..|+..|++-+.|.
T Consensus 386 ~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 386 FNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 3333456788899999888888999999999999987763
No 95
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=20.83 E-value=1.3e+02 Score=25.58 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=24.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 032404 69 IGISSKAMGIMNSFINDIFEKLAQESSRLAR 99 (141)
Q Consensus 69 ~gISskAm~ImnSfvnDiferIA~EAs~La~ 99 (141)
...=.+|..+|-+|-..|.|.+......|++
T Consensus 127 k~aLkdAse~ia~fy~kIsE~~GeKYk~lAk 157 (321)
T 1a87_A 127 KEALLKASELVSGMGDKLGEYLGVKYKNVAK 157 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888888888898888888888775
No 96
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44 E-value=85 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhcCCCCc
Q 032404 55 KIYIFKVLKQVHPDIGI 71 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gI 71 (141)
..-.++..++.|||..-
T Consensus 35 k~ayr~l~~~~HPDk~~ 51 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNS 51 (99)
T ss_dssp HHHHHHHHHHSCTTTCS
T ss_pred HHHHHHHHHHHCcCCCC
Confidence 34457788899999765
No 97
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=20.42 E-value=1.1e+02 Score=26.24 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHhhhcCCCCcChHHHHHHHHhhCch
Q 032404 87 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 121 (141)
Q Consensus 87 ferIA~EAs~La~~nkk~TltsreIqtAVrLlLPG 121 (141)
++.+..+|..++....+..|+..++..|+.-+++|
T Consensus 225 L~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 225 LENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 34566777777777777899999999999988876
No 98
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=20.27 E-value=1.2e+02 Score=19.05 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhcCCCCcchH
Q 032404 55 KIYIFKVLKQVHPDIGISSK 74 (141)
Q Consensus 55 ~~YIyKVLKQVhpd~gISsk 74 (141)
..-..+..++.|||.+=+..
T Consensus 33 k~ayr~l~~~~HPDk~g~~~ 52 (71)
T 2guz_A 33 KEVHRKIMLANHPDKGGSPF 52 (71)
T ss_dssp HHHHHHHHHHHCGGGTCCHH
T ss_pred HHHHHHHHHHHCCCCCCCHH
Confidence 33456778899999875543
Done!