BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032405
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q573D7|Y238_AFV2P Uncharacterized protein ORF238 OS=Acidianus filamentous virus 2
(isolate Italy/Pozzuoli) GN=ORF238 PE=4 SV=1
Length = 238
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGD 79
L D+ V D++YL++VS G + ++N K I + ++ IQ +++EGD
Sbjct: 23 LTDVYV-DQSYLYKVSDNGVKLPSTNEKAIFFKQDDINIQNLVSEGD 68
>sp|Q6UFS5|ZN503_DANRE Zinc finger protein 503 OS=Danio rerio GN=znf503 PE=1 SV=1
Length = 563
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 16 VVVEGSAKEGCGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSN 58
V GS+++ + PL L DIGV DK+ S P +KD+S+
Sbjct: 117 VTSNGSSEKESKSGPLKLSDIGVEDKSSFKPYSKPADKKDSSS 159
>sp|A5CWE4|CPDA_VESOH 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA
OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii
(strain HA) GN=cpdA PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 58 NLKCIIRRNGNVQIQGVMTEGDVA-KNSSKVYKMLQQQLCP--------PGEFTVSFSLP 108
NLK II R ++ I ++ GD+ K S YK LQQ L P PG +L
Sbjct: 27 NLKKIISRISHINIDVLLITGDLTHKGSITSYKALQQMLYPIQIKLLIIPGNHDNKNNLS 86
Query: 109 GPVDPRLFHPQF 120
LF QF
Sbjct: 87 ATFSKNLF-SQF 97
>sp|Q4K9T4|NUOCD_PSEF5 NADH-quinone oxidoreductase subunit C/D OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=nuoC PE=3 SV=1
Length = 593
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 29 PPLGLYDI-GVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVA 81
P + LYD+ GV ++ R LPGA I RN +V I+ ++EGD++
Sbjct: 64 PYVMLYDLHGVDERLRTKRQGLPGADFSVFYHLLSIERNSDVMIKVALSEGDLS 117
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 75 MTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQ 119
+T D S KV ++L+ + PG +T+ S PG V+ +L PQ
Sbjct: 48 VTHADCQTVSDKVGEILEAEDAIPGHYTLEVSSPG-VERKLLKPQ 91
>sp|B0CI58|KDSB_BRUSI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella suis
(strain ATCC 23445 / NCTC 10510) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|Q8YEH4|KDSB_BRUME 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella
melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC
10094) GN=kdsB PE=3 SV=2
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|C0RGA2|KDSB_BRUMB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella
melitensis biotype 2 (strain ATCC 23457) GN=kdsB PE=3
SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|Q57FX6|KDSB_BRUAB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella abortus
biovar 1 (strain 9-941) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|Q2YPQ5|KDSB_BRUA2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella abortus
(strain 2308) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|B2S7U2|KDSB_BRUA1 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella abortus
(strain S19) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|Q8G3B2|KDSB_BRUSU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella suis
biovar 1 (strain 1330) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|A9M6P3|KDSB_BRUC2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella canis
(strain ATCC 23365 / NCTC 10854) GN=kdsB PE=3 SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEIDAVVNVQGDLPTIDP 111
>sp|A5VMY8|KDSB_BRUO2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Brucella ovis
(strain ATCC 25840 / 63/290 / NCTC 10512) GN=kdsB PE=3
SV=2
Length = 251
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 26 CGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSS 85
CG P + + V+D+A ++ D+ + ++ +G+ + +MT GD S
Sbjct: 29 CGKPMI----VHVADRAAAAKLGRTVIATDSEEIFKVVAAHGH---EAIMTRGDHESGSD 81
Query: 86 KVYKMLQQQLCPPGEFTVSFSLPG---PVDP 113
++Y+ L +L P GE ++ G +DP
Sbjct: 82 RIYEAL-AKLDPSGEVDAVVNVQGDLPTIDP 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,363,362
Number of Sequences: 539616
Number of extensions: 2208345
Number of successful extensions: 4167
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4165
Number of HSP's gapped (non-prelim): 17
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)