Query 032405
Match_columns 141
No_of_seqs 135 out of 1013
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 100.0 7E-28 1.5E-32 167.0 11.4 89 33-132 1-92 (92)
2 PRK10743 heat shock protein Ib 100.0 6.6E-28 1.4E-32 179.5 11.7 91 31-134 34-125 (137)
3 PRK11597 heat shock chaperone 100.0 1.5E-27 3.2E-32 178.7 13.0 92 29-133 30-122 (142)
4 COG0071 IbpA Molecular chapero 99.9 3.1E-27 6.8E-32 176.4 12.6 113 12-136 22-136 (146)
5 cd06471 ACD_LpsHSP_like Group 99.9 2.3E-26 4.9E-31 159.2 11.0 88 33-132 2-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.9E-25 4.1E-30 154.7 11.9 88 32-132 1-90 (90)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 6.5E-24 1.4E-28 148.2 12.1 92 35-137 1-92 (102)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.7E-24 5.9E-29 148.3 10.0 82 35-132 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.9 3.7E-24 8.1E-29 146.5 9.1 79 35-132 2-81 (81)
10 cd06498 ACD_alphaB-crystallin_ 99.9 1.4E-23 2.9E-28 144.3 9.9 82 36-133 2-84 (84)
11 cd06475 ACD_HspB1_like Alpha c 99.9 2.4E-23 5.1E-28 143.7 10.0 84 33-131 2-85 (86)
12 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 2.4E-23 5.3E-28 142.6 10.0 82 35-132 1-83 (83)
13 cd06476 ACD_HspB2_like Alpha c 99.9 9.8E-23 2.1E-27 139.9 9.8 81 37-132 3-83 (83)
14 cd06482 ACD_HspB10 Alpha cryst 99.9 1.3E-22 2.7E-27 140.7 9.9 81 39-131 6-86 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 3.7E-22 8.1E-27 134.2 11.0 87 35-132 1-88 (88)
16 cd06481 ACD_HspB9_like Alpha c 99.9 2.6E-22 5.6E-27 138.7 9.8 81 38-132 4-87 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 1.2E-21 2.5E-26 134.8 9.7 79 37-131 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.9 1E-21 2.2E-26 133.8 8.4 77 40-132 6-83 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 7.6E-18 1.7E-22 117.7 9.4 81 36-131 10-90 (91)
20 KOG0710 Molecular chaperone (s 99.7 3E-18 6.4E-23 134.2 6.9 97 28-135 81-182 (196)
21 cd00298 ACD_sHsps_p23-like Thi 99.6 3.9E-15 8.4E-20 96.1 9.3 80 36-132 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.5 3.8E-13 8.1E-18 103.8 11.1 90 32-136 63-152 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.4 1.6E-12 3.4E-17 86.5 8.6 71 36-135 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 9.8E-11 2.1E-15 90.5 10.1 77 33-136 93-171 (177)
25 cd06463 p23_like Proteins cont 99.1 4.3E-10 9.3E-15 74.1 8.9 75 37-135 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 1.6E-08 3.4E-13 67.7 8.1 77 35-135 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.3 1.9E-05 4.2E-10 51.3 10.9 76 33-132 2-79 (79)
28 PF08190 PIH1: pre-RNA process 98.2 1.2E-05 2.5E-10 66.2 9.3 66 40-131 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 98.1 5.2E-05 1.1E-09 53.5 10.3 77 33-134 2-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 7.4E-05 1.6E-09 50.3 8.3 77 35-135 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.9 0.00015 3.2E-09 48.5 8.6 74 35-135 2-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00045 9.7E-09 46.8 9.5 76 34-136 1-78 (85)
33 cd06488 p23_melusin_like p23_l 97.7 0.00076 1.7E-08 46.0 10.2 79 33-135 2-80 (87)
34 cd06468 p23_CacyBP p23_like do 97.5 0.002 4.4E-08 43.7 10.1 79 33-135 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 97.0 0.012 2.7E-07 41.0 9.7 76 32-135 6-83 (93)
36 cd00237 p23 p23 binds heat sho 96.5 0.093 2E-06 37.3 10.9 78 32-135 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.3 0.033 7.1E-07 47.0 8.9 79 33-135 158-236 (356)
38 KOG1309 Suppressor of G2 allel 95.9 0.03 6.6E-07 43.9 6.5 78 33-134 5-82 (196)
39 cd06490 p23_NCB5OR p23_like do 95.5 0.36 7.9E-06 32.8 10.0 78 34-136 1-81 (87)
40 cd06492 p23_mNUDC_like p23-lik 94.2 0.88 1.9E-05 31.0 9.2 72 37-135 4-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 90.0 5.2 0.00011 28.2 10.1 79 33-135 6-87 (102)
42 cd06471 ACD_LpsHSP_like Group 75.5 4.6 9.9E-05 27.1 3.6 30 41-73 62-91 (93)
43 cd06482 ACD_HspB10 Alpha cryst 73.7 7 0.00015 26.7 4.1 37 96-134 5-41 (87)
44 cd06472 ACD_ScHsp26_like Alpha 71.2 6.7 0.00014 26.4 3.5 31 40-73 59-90 (92)
45 COG5091 SGT1 Suppressor of G2 69.3 3.8 8.2E-05 34.6 2.3 79 33-134 178-256 (368)
46 cd06480 ACD_HspB8_like Alpha-c 67.7 14 0.00029 25.6 4.5 31 41-73 58-89 (91)
47 cd06476 ACD_HspB2_like Alpha c 67.5 7.8 0.00017 26.1 3.2 34 98-133 6-39 (83)
48 cd06498 ACD_alphaB-crystallin_ 66.9 10 0.00022 25.5 3.7 31 42-75 51-83 (84)
49 cd06464 ACD_sHsps-like Alpha-c 66.5 12 0.00025 24.0 3.9 33 38-73 53-86 (88)
50 cd06477 ACD_HspB3_Like Alpha c 66.5 8.3 0.00018 26.1 3.2 33 100-134 8-40 (83)
51 cd06469 p23_DYX1C1_like p23_li 66.2 14 0.00031 23.5 4.2 32 41-75 36-68 (78)
52 cd06478 ACD_HspB4-5-6 Alpha-cr 65.5 11 0.00024 25.1 3.7 33 99-133 7-39 (83)
53 PF04972 BON: BON domain; Int 65.0 13 0.00028 22.9 3.7 24 50-76 12-35 (64)
54 cd06470 ACD_IbpA-B_like Alpha- 63.9 14 0.00031 24.8 4.0 35 99-135 11-45 (90)
55 PF00011 HSP20: Hsp20/alpha cr 63.4 13 0.00027 25.1 3.7 35 39-76 53-88 (102)
56 PF13349 DUF4097: Domain of un 61.9 57 0.0012 23.5 9.1 81 33-129 67-147 (166)
57 cd06497 ACD_alphaA-crystallin_ 61.5 17 0.00037 24.4 4.0 34 98-133 9-42 (86)
58 PF14913 DPCD: DPCD protein fa 60.4 50 0.0011 26.2 6.9 71 37-133 92-169 (194)
59 cd02178 GH16_beta_agarase Beta 57.4 40 0.00087 26.9 6.2 44 65-109 63-109 (258)
60 cd06526 metazoan_ACD Alpha-cry 56.8 21 0.00046 23.4 3.8 34 100-135 8-41 (83)
61 PF01954 DUF104: Protein of un 55.0 8.5 0.00019 24.7 1.5 14 114-128 3-16 (60)
62 PRK10743 heat shock protein Ib 54.5 25 0.00053 26.0 4.2 34 99-134 45-78 (137)
63 PRK05518 rpl6p 50S ribosomal p 51.9 43 0.00093 26.0 5.3 45 54-131 13-57 (180)
64 COG0071 IbpA Molecular chapero 51.9 31 0.00068 25.2 4.4 34 40-76 99-133 (146)
65 TIGR03653 arch_L6P archaeal ri 51.3 50 0.0011 25.3 5.5 46 54-132 7-52 (170)
66 KOG3413 Mitochondrial matrix p 51.1 8.3 0.00018 29.4 1.2 24 107-131 65-88 (156)
67 TIGR03654 L6_bact ribosomal pr 50.8 46 0.001 25.5 5.3 45 54-132 11-55 (175)
68 cd06479 ACD_HspB7_like Alpha c 50.4 35 0.00075 22.9 4.1 33 99-133 8-40 (81)
69 PTZ00027 60S ribosomal protein 49.8 46 0.00099 26.0 5.2 48 54-132 13-60 (190)
70 COG4004 Uncharacterized protei 49.7 41 0.00088 23.7 4.3 35 34-75 26-60 (96)
71 cd02177 GH16_kappa_carrageenas 48.2 84 0.0018 25.8 6.8 44 65-109 49-103 (269)
72 cd06475 ACD_HspB1_like Alpha c 47.6 44 0.00096 22.4 4.3 35 98-134 9-43 (86)
73 KOG1667 Zn2+-binding protein M 47.4 1.2E+02 0.0027 25.4 7.5 81 33-136 216-296 (320)
74 PRK05498 rplF 50S ribosomal pr 46.5 54 0.0012 25.2 5.1 44 54-131 12-55 (178)
75 cd02175 GH16_lichenase lichena 45.1 51 0.0011 25.4 4.9 49 54-109 31-79 (212)
76 cd06481 ACD_HspB9_like Alpha c 45.0 45 0.00098 22.4 4.0 33 100-134 8-40 (87)
77 cd02180 GH16_fungal_KRE6_gluca 44.4 86 0.0019 26.1 6.3 50 53-109 39-90 (295)
78 PRK11597 heat shock chaperone 42.1 45 0.00098 24.8 3.9 32 100-133 44-75 (142)
79 cd08023 GH16_laminarinase_like 38.8 1.5E+02 0.0033 22.9 6.7 53 51-109 34-90 (235)
80 KOG3591 Alpha crystallins [Pos 38.0 49 0.0011 25.5 3.7 32 43-76 117-149 (173)
81 PF12992 DUF3876: Domain of un 37.9 1.1E+02 0.0023 21.4 5.1 38 32-72 26-68 (95)
82 cd00413 Glyco_hydrolase_16 gly 37.4 1.3E+02 0.0028 22.5 6.0 51 52-110 27-79 (210)
83 PRK11198 LysM domain/BON super 37.0 48 0.001 24.5 3.4 24 50-76 38-61 (147)
84 CHL00140 rpl6 ribosomal protei 35.9 1.2E+02 0.0026 23.3 5.5 18 54-74 12-29 (178)
85 cd00503 Frataxin Frataxin is a 34.6 41 0.00088 23.8 2.5 17 114-131 28-44 (105)
86 PRK00446 cyaY frataxin-like pr 34.4 36 0.00077 24.1 2.2 16 116-132 29-44 (105)
87 TIGR03421 FeS_CyaY iron donor 33.3 36 0.00078 24.0 2.1 17 115-132 26-42 (102)
88 PF01491 Frataxin_Cyay: Fratax 31.5 42 0.00091 23.7 2.2 18 114-132 30-47 (109)
89 PTZ00179 60S ribosomal protein 30.0 1.9E+02 0.004 22.6 5.8 18 54-74 12-29 (189)
90 PRK01433 hscA chaperone protei 29.4 1.4E+02 0.003 27.3 5.6 44 33-76 412-466 (595)
91 PTZ00186 heat shock 70 kDa pre 28.5 1.2E+02 0.0025 28.1 5.0 44 33-76 457-511 (657)
92 TIGR03422 mito_frataxin fratax 27.7 50 0.0011 23.1 2.0 15 117-132 30-44 (97)
93 COG2880 Uncharacterized protei 26.5 9.7 0.00021 25.2 -1.7 12 115-127 6-17 (67)
94 PF07873 YabP: YabP family; I 24.4 71 0.0015 20.4 2.1 21 52-75 23-43 (66)
95 COG2925 SbcB Exonuclease I [DN 22.5 65 0.0014 28.5 2.1 50 3-52 217-267 (475)
96 PF08308 PEGA: PEGA domain; I 20.5 2.3E+02 0.0049 17.6 4.6 38 35-74 28-66 (71)
97 PF12080 GldM_C: GldM C-termin 20.5 1.3E+02 0.0028 23.1 3.3 29 44-75 17-45 (181)
98 PRK05183 hscA chaperone protei 20.1 2.7E+02 0.0058 25.4 5.7 44 33-76 434-488 (616)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=7e-28 Score=166.96 Aligned_cols=89 Identities=21% Similarity=0.377 Sum_probs=80.2
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccC-CEEEEEEEEee--cccCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRN-GNVQIQGVMTE--GDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~-~~L~I~G~~~~--~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
++||+|++++|+|.++||||+|+||+|++ ++ +.|+|+|+++. +.....+++.||. +|+|.|+|+||.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v---~~~~~L~I~g~~~~~~~~~~~~~~~~e~~-------~g~f~r~i~LP~ 70 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEV---EDGRVLRISGERKKEEEKKGDDWHRVERS-------SGRFVRRFRLPE 70 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEE---eCCCEEEEEEEecccccccCCCEEEEEEe-------ccEEEEEEECCC
Confidence 48999999999999999999999999998 65 58999999872 2334567788888 999999999999
Q ss_pred CCCCCCceeEeCCCCEEEEEEec
Q 032405 110 PVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 110 ~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
+|+.++|+|+|+ ||||+|++||
T Consensus 71 ~v~~~~i~A~~~-nGvL~I~lPK 92 (92)
T cd06472 71 NADADEVKAFLE-NGVLTVTVPK 92 (92)
T ss_pred CCCHHHCEEEEE-CCEEEEEecC
Confidence 999999999999 9999999998
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=6.6e-28 Score=179.55 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=82.2
Q ss_pred CcceeEE-EcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 31 LGLYDIG-VSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 31 ~~~vDi~-Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
++++||+ +++++|+|.++||||+|+||+|++ ++|.|+|+|+++.+.....+++.||. +|+|+|+|.||.
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v---~~~~LtI~ge~~~~~~~~~~~~~Er~-------~g~F~R~~~LP~ 103 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITA---QDNLLVVKGAHADEQKERTYLYQGIA-------ERNFERKFQLAE 103 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEECccccCCcEEEEEEE-------CCEEEEEEECCC
Confidence 3689999 599999999999999999999999 89999999998744445678888988 999999999999
Q ss_pred CCCCCCceeEeCCCCEEEEEEeccC
Q 032405 110 PVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 110 ~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
.||.+ +|+|+ ||||+|+|||.+
T Consensus 104 ~Vd~~--~A~~~-dGVL~I~lPK~~ 125 (137)
T PRK10743 104 NIHVR--GANLV-NGLLYIDLERVI 125 (137)
T ss_pred CcccC--cCEEe-CCEEEEEEeCCC
Confidence 99999 59999 999999999963
No 3
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=1.5e-27 Score=178.73 Aligned_cols=92 Identities=16% Similarity=0.323 Sum_probs=83.1
Q ss_pred CCCcceeEEE-cCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEEC
Q 032405 29 PPLGLYDIGV-SDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSL 107 (141)
Q Consensus 29 p~~~~vDi~E-t~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~L 107 (141)
+..|++||+| ++++|+|.++||||+|+||+|++ ++|.|+|+|+++.+....+|++.||. +|+|+|+|.|
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~~~LtI~ge~~~~~~~~~~~~~Er~-------~g~F~R~f~L 99 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQL---EGTRLTVKGTPEQPEKEVKWLHQGLV-------NQPFSLSFTL 99 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---ECCEEEEEEEEccccCCCcEEEEEEe-------CcEEEEEEEC
Confidence 4456899998 57899999999999999999999 89999999998744445678999998 9999999999
Q ss_pred CCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 108 PGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 108 P~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
|.+||.+ +|+|+ ||||+|+|||.
T Consensus 100 P~~vd~~--~A~~~-nGVL~I~lPK~ 122 (142)
T PRK11597 100 AENMEVS--GATFV-NGLLHIDLIRN 122 (142)
T ss_pred CCCcccC--cCEEc-CCEEEEEEecc
Confidence 9999998 79999 99999999996
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-27 Score=176.45 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=93.8
Q ss_pred CCceEEeeccccCCCCCCCCcceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEee--cccCCceeeEEE
Q 032405 12 MKPLVVVEGSAKEGCGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTE--GDVAKNSSKVYK 89 (141)
Q Consensus 12 ~~~~~~~~g~~~~~~~~p~~~~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~--~~~~~~~~~~er 89 (141)
+.+++...+....... -..|++||+|++++|+|.++||||+|+||+|++ +++.|+|+|++.. +.....+.+.+|
T Consensus 22 fd~~~~~~~~~~~~~~-~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~---~~~~l~I~g~~~~~~~~~~~~~~~~e~ 97 (146)
T COG0071 22 FDRLFREFGNLPESRP-TGTPPVDIEETDDEYRITAELPGVDKEDIEITV---EGNTLTIRGEREEEEEEEEEGYLRRER 97 (146)
T ss_pred hhhhhhhhhccccccc-CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEE---ECCEEEEEEEecccccccCCceEEEEE
Confidence 3344444444433321 245699999999999999999999999999999 8999999999973 334456777788
Q ss_pred EeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccCCC
Q 032405 90 MLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKA 136 (141)
Q Consensus 90 ~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~~~ 136 (141)
. +|.|+|+|.||..|+++.|+|+|+ ||||+|+|||.+++
T Consensus 98 ~-------~~~f~r~~~Lp~~v~~~~~~A~~~-nGvL~I~lpk~~~~ 136 (146)
T COG0071 98 A-------YGEFERTFRLPEKVDPEVIKAKYK-NGLLTVTLPKAEPE 136 (146)
T ss_pred E-------eeeEEEEEECcccccccceeeEee-CcEEEEEEeccccc
Confidence 8 999999999999999999999999 99999999999886
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.94 E-value=2.3e-26 Score=159.19 Aligned_cols=88 Identities=28% Similarity=0.471 Sum_probs=79.5
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEee--c--ccCCceeeEEEEeccccCCCeeEEEEEECC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTE--G--DVAKNSSKVYKMLQQQLCPPGEFTVSFSLP 108 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~--~--~~~~~~~~~er~~~~~~~~~G~F~R~~~LP 108 (141)
++||+|++++|+|.++||||+++||+|++ +++.|+|+|+++. + ....++++.||. +|.|+|+|.||
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~---~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~-------~g~f~r~~~lp 71 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDY---KDGYLTISAKRDESKDEKDKKGNYIRRERY-------YGSFSRSFYLP 71 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEccccccccccCCEEEEeee-------ccEEEEEEECC
Confidence 68999999999999999999999999999 8999999999972 1 122367788887 99999999999
Q ss_pred CCCCCCCceeEeCCCCEEEEEEec
Q 032405 109 GPVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 109 ~~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
+++.++|+|+|+ ||||+|++||
T Consensus 72 -~v~~~~i~A~~~-dGvL~I~lPK 93 (93)
T cd06471 72 -NVDEEEIKAKYE-NGVLKITLPK 93 (93)
T ss_pred -CCCHHHCEEEEE-CCEEEEEEcC
Confidence 799999999999 9999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.93 E-value=1.9e-25 Score=154.69 Aligned_cols=88 Identities=17% Similarity=0.296 Sum_probs=78.4
Q ss_pred cceeEEEcC-CeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEe-ecccCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 32 GLYDIGVSD-KAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMT-EGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 32 ~~vDi~Et~-~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~-~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
|++||+|++ ++|+|.++|||++|++|+|++ +++.|+|+|+++ ......++++.|+. +|+|.|+|.||.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~---~~~~L~I~g~~~~~~~~~~~~~~~e~~-------~g~f~R~~~LP~ 70 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEV---ENNQLTVTGKKADEENEEREYLHRGIA-------KRAFERSFNLAD 70 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcccccCCCcEEEEEEe-------ceEEEEEEECCC
Confidence 378999985 999999999999999999999 899999999998 33344567777887 999999999999
Q ss_pred CCCCCCceeEeCCCCEEEEEEec
Q 032405 110 PVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 110 ~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
++|.+ +|+|+ ||||+|+||+
T Consensus 71 ~vd~~--~A~~~-~GvL~I~l~~ 90 (90)
T cd06470 71 HVKVK--GAELE-NGLLTIDLER 90 (90)
T ss_pred CceEC--eeEEe-CCEEEEEEEC
Confidence 99875 99999 9999999986
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=6.5e-24 Score=148.23 Aligned_cols=92 Identities=25% Similarity=0.452 Sum_probs=75.3
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
||.|++++|.|.++|||+++++|+|++ +++.|+|+|.+........+...++. +|.|.|+|.||.++|.+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~---~~~~L~I~g~~~~~~~~~~~~~~~~~-------~~~f~r~~~lP~~vd~~ 70 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKV---DDNKLVISGKRKEEEEDDRYYRSERR-------YGSFERSIRLPEDVDPD 70 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEE---ETTEEEEEEEEEGEECTTCEEEE-S--------SEEEEEEEE-STTB-GG
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEE---ecCccceeceeeeeeeeeeeeecccc-------cceEEEEEcCCCcCCcc
Confidence 899999999999999999999999999 89999999999822223345555555 99999999999999999
Q ss_pred CceeEeCCCCEEEEEEeccCCCC
Q 032405 115 LFHPQFRQDGILEGVVMKHRKAG 137 (141)
Q Consensus 115 ~I~A~~~~dGVL~I~vPK~~~~~ 137 (141)
+|+|.|+ ||+|+|++||.+..+
T Consensus 71 ~i~a~~~-~GvL~I~~pk~~~~~ 92 (102)
T PF00011_consen 71 KIKASYE-NGVLTITIPKKEEEE 92 (102)
T ss_dssp G-EEEET-TSEEEEEEEBSSSCT
T ss_pred eEEEEec-CCEEEEEEEcccccc
Confidence 9999999 999999999998874
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=2.7e-24 Score=148.32 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=71.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
+|+|++++|.|.++||||+++||+|++ .++.|+|+|++........+. ..+|+|+|.||.+||++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~~~~~~~------------~~ef~R~~~LP~~Vd~~ 68 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKV---LDDYVEIHGKHSERQDDHGYI------------SREFHRRYRLPSNVDQS 68 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcceeCCCCEE------------EEEEEEEEECCCCCChH
Confidence 799999999999999999999999999 899999999875322222222 13599999999999999
Q ss_pred CceeEe-CCCCEEEEEEec
Q 032405 115 LFHPQF-RQDGILEGVVMK 132 (141)
Q Consensus 115 ~I~A~~-~~dGVL~I~vPK 132 (141)
+|+|+| + ||||+|++||
T Consensus 69 ~i~A~~~~-dGvL~I~~PK 86 (86)
T cd06497 69 AITCSLSA-DGMLTFSGPK 86 (86)
T ss_pred HeEEEeCC-CCEEEEEecC
Confidence 999999 8 9999999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.91 E-value=3.7e-24 Score=146.51 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=71.5
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
||.|++++|.|.++|||++|+||+|++ +++.|+|+|+++.+.. +. +|+|.|+|.||.+||++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v---~~~~L~I~ger~~~~~--------~~-------~g~F~R~~~LP~~vd~e 63 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTT---SNNQIEVHAEKLASDG--------TV-------MNTFTHKCQLPEDVDPT 63 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEeccCC--------CE-------EEEEEEEEECCCCcCHH
Confidence 789999999999999999999999999 8999999999863221 12 79999999999999999
Q ss_pred CceeEe-CCCCEEEEEEec
Q 032405 115 LFHPQF-RQDGILEGVVMK 132 (141)
Q Consensus 115 ~I~A~~-~~dGVL~I~vPK 132 (141)
+|+|+| + ||||+|++++
T Consensus 64 ~v~A~l~~-~GvL~I~~~~ 81 (81)
T cd06479 64 SVSSSLGE-DGTLTIKARR 81 (81)
T ss_pred HeEEEecC-CCEEEEEecC
Confidence 999997 8 9999999986
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.90 E-value=1.4e-23 Score=144.34 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=70.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCC
Q 032405 36 IGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRL 115 (141)
Q Consensus 36 i~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~ 115 (141)
+.+++++|.|.++||||+++||+|++ .++.|+|+|++..+.....++ .++|+|+|.||.+||+++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~~~~~~~------------~~eF~R~~~LP~~vd~~~ 66 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKV---LGDFIEIHGKHEERQDEHGFI------------SREFQRKYRIPADVDPLT 66 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcceeCCCCEE------------EEEEEEEEECCCCCChHH
Confidence 57889999999999999999999999 899999999875322222222 347999999999999999
Q ss_pred ceeEe-CCCCEEEEEEecc
Q 032405 116 FHPQF-RQDGILEGVVMKH 133 (141)
Q Consensus 116 I~A~~-~~dGVL~I~vPK~ 133 (141)
|+|+| + ||||+|++||.
T Consensus 67 i~A~~~~-dGvL~I~lPk~ 84 (84)
T cd06498 67 ITSSLSP-DGVLTVCGPRK 84 (84)
T ss_pred cEEEeCC-CCEEEEEEeCC
Confidence 99999 6 99999999984
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.90 E-value=2.4e-23 Score=143.66 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
..||+|++++|.|.++|||+++++|+|++ .++.|+|+|++..+.....+ . .++|+|+|.||.+||
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v---~~~~L~I~g~~~~~~~~~~~-----~-------~~~f~R~f~LP~~vd 66 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKT---KDGVVEITGKHEEKQDEHGF-----V-------SRCFTRKYTLPPGVD 66 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEE---ECCEEEEEEEECcCcCCCCE-----E-------EEEEEEEEECCCCCC
Confidence 46999999999999999999999999999 89999999987632111111 1 358999999999999
Q ss_pred CCCceeEeCCCCEEEEEEe
Q 032405 113 PRLFHPQFRQDGILEGVVM 131 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vP 131 (141)
.++|+|.|+.||||+|++|
T Consensus 67 ~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 67 PTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred HHHcEEEECCCCeEEEEec
Confidence 9999999944999999998
No 12
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=2.4e-23 Score=142.57 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=69.9
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
.|.+++++|.|.++|||++++||+|++ .++.|+|+|++..+.....+++ .+|+|+|.||.+||++
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~~~~~~~~~~------------~ef~R~~~LP~~vd~~ 65 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKV---LGDFVEIHGKHEERQDEHGFIS------------REFHRRYRLPPGVDPA 65 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEceEcCCCCEEE------------EEEEEEEECCCCcChH
Confidence 367899999999999999999999999 8999999998753222222221 2599999999999999
Q ss_pred CceeEe-CCCCEEEEEEec
Q 032405 115 LFHPQF-RQDGILEGVVMK 132 (141)
Q Consensus 115 ~I~A~~-~~dGVL~I~vPK 132 (141)
+|+|+| + ||||+|++||
T Consensus 66 ~i~A~~~~-dGvL~I~~PK 83 (83)
T cd06478 66 AITSSLSA-DGVLTISGPR 83 (83)
T ss_pred HeEEEECC-CCEEEEEecC
Confidence 999999 7 9999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.89 E-value=9.8e-23 Score=139.91 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=68.4
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCc
Q 032405 37 GVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLF 116 (141)
Q Consensus 37 ~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I 116 (141)
...+++|.|.++|||++++||+|++ .++.|+|+|++....... .+. +++|+|+|.||.+||+++|
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v---~~~~L~I~g~~~~~~~~~-----~~~-------~~eF~R~~~LP~~vd~~~v 67 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRT---VDNLLEVSARHPQRMDRH-----GFV-------SREFTRTYILPMDVDPLLV 67 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEcceecCC-----CEE-------EEEEEEEEECCCCCChhhE
Confidence 4578999999999999999999999 899999999975221111 122 5689999999999999999
Q ss_pred eeEeCCCCEEEEEEec
Q 032405 117 HPQFRQDGILEGVVMK 132 (141)
Q Consensus 117 ~A~~~~dGVL~I~vPK 132 (141)
+|+|..||||+|++||
T Consensus 68 ~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 68 RASLSHDGILCIQAPR 83 (83)
T ss_pred EEEecCCCEEEEEecC
Confidence 9999339999999997
No 14
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.89 E-value=1.3e-22 Score=140.71 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.1
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCcee
Q 032405 39 SDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHP 118 (141)
Q Consensus 39 t~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A 118 (141)
.+++|+|.++|||++|+||+|++ .+|.|+|+|+++.+.... ...||. +|+|.|+|.||.+||.++|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v---~~~~L~I~ger~~~~e~~--~~~er~-------~g~F~R~f~LP~~Vd~d~i~A 73 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKV---KDGKVQVSAERENRYDCL--GSKKYS-------YMNICKEFSLPPGVDEKDVTY 73 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEecccccC--CccEEE-------EEEEEEEEECCCCcChHHcEE
Confidence 57899999999999999999999 899999999987322211 123566 999999999999999999999
Q ss_pred EeCCCCEEEEEEe
Q 032405 119 QFRQDGILEGVVM 131 (141)
Q Consensus 119 ~~~~dGVL~I~vP 131 (141)
+|+++|||+|.-|
T Consensus 74 ~~~~~~~l~i~~~ 86 (87)
T cd06482 74 SYGLGSVVKIETP 86 (87)
T ss_pred EEcCCCEEEEeeC
Confidence 9995569999876
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.88 E-value=3.7e-22 Score=134.15 Aligned_cols=87 Identities=29% Similarity=0.495 Sum_probs=76.0
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeec-ccCCceeeEEEEeccccCCCeeEEEEEECCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEG-DVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDP 113 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~-~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~ 113 (141)
|+.|++++|.+.++|||+++++|+|++ .++.|.|+|++... .....+...++. +|.|.|+|.||..+|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v---~~~~l~I~g~~~~~~~~~~~~~~~~~~-------~~~f~r~~~LP~~vd~ 70 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEV---EDGVLTISGEREEEEEEEENYLRRERS-------YGSFSRSFRLPEDVDP 70 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEecccccCCcEEEEEEe-------CcEEEEEEECCCCcCH
Confidence 688999999999999999999999999 88999999999832 222234444555 8999999999999999
Q ss_pred CCceeEeCCCCEEEEEEec
Q 032405 114 RLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 114 ~~I~A~~~~dGVL~I~vPK 132 (141)
++++|.|+ ||+|+|++||
T Consensus 71 ~~i~a~~~-~G~L~I~~pk 88 (88)
T cd06464 71 DKIKASLE-NGVLTITLPK 88 (88)
T ss_pred HHcEEEEe-CCEEEEEEcC
Confidence 99999999 9999999998
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.88 E-value=2.6e-22 Score=138.74 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecc-c-CCceeeEEEEeccccCCCeeEEEEEECCCCCCCCC
Q 032405 38 VSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGD-V-AKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRL 115 (141)
Q Consensus 38 Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~-~-~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~ 115 (141)
+.+++|.|.++|||++++||+|++ +++.|+|+|++..+. . ...+ ++. +|+|.|+|.||.+||.++
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v---~~~~L~I~g~~~~~~~~~~~~~---~~~-------~~~F~R~~~LP~~Vd~~~ 70 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRV---DGRKLVVTGKREKKNEDEKGSF---SYE-------YQEFVREAQLPEHVDPEA 70 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEE---ECCEEEEEEEEeeecccCCCcE---EEE-------eeEEEEEEECCCCcChHH
Confidence 567999999999999999999999 899999999986322 1 1222 244 799999999999999999
Q ss_pred ceeEe-CCCCEEEEEEec
Q 032405 116 FHPQF-RQDGILEGVVMK 132 (141)
Q Consensus 116 I~A~~-~~dGVL~I~vPK 132 (141)
|+|+| + ||||+|++|+
T Consensus 71 i~A~~~~-dGvL~I~~P~ 87 (87)
T cd06481 71 VTCSLSP-SGHLHIRAPR 87 (87)
T ss_pred eEEEeCC-CceEEEEcCC
Confidence 99999 8 9999999995
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.87 E-value=1.2e-21 Score=134.77 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=67.3
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCc
Q 032405 37 GVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLF 116 (141)
Q Consensus 37 ~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I 116 (141)
-|++++|.|.++|||++|+||+|++ .++.|+|+|++..+.....+ . .++|+|+|.||.+|+.++|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v---~~~~L~I~ge~~~~~~~~~~-----~-------~r~F~R~~~LP~~Vd~~~v 67 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQV---FEGWLLIKGQHGVRMDEHGF-----I-------SRSFTRQYQLPDGVEHKDL 67 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEE---ECCEEEEEEEEccccCCCCE-----E-------EEEEEEEEECCCCcchheE
Confidence 4789999999999999999999999 89999999998632221122 1 3489999999999999999
Q ss_pred eeEe-CCCCEEEEEEe
Q 032405 117 HPQF-RQDGILEGVVM 131 (141)
Q Consensus 117 ~A~~-~~dGVL~I~vP 131 (141)
+|+| + ||||+|+-|
T Consensus 68 ~A~~~~-dGvL~I~~~ 82 (83)
T cd06477 68 SAMLCH-DGILVVETK 82 (83)
T ss_pred EEEEcC-CCEEEEEec
Confidence 9998 7 999999865
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.86 E-value=1e-21 Score=133.81 Aligned_cols=77 Identities=21% Similarity=0.366 Sum_probs=66.8
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeE
Q 032405 40 DKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQ 119 (141)
Q Consensus 40 ~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~ 119 (141)
.++|.|.++|||++++||+|++ +++.|+|+|++..+.... .+. +|+|.|+|.||.+||+++|+|+
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v---~~~~L~I~g~~~~~~~~~-----~~~-------~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKV---SDNKLVVEGKHEEREDEH-----GYV-------SREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEE---ECCEEEEEEEEeeeccCC-----CEE-------EEEEEEEEECCCCCChHHeEEE
Confidence 3699999999999999999999 899999999987322211 122 6899999999999999999999
Q ss_pred eCCC-CEEEEEEec
Q 032405 120 FRQD-GILEGVVMK 132 (141)
Q Consensus 120 ~~~d-GVL~I~vPK 132 (141)
|. | |||+|++||
T Consensus 71 ~~-~~GvL~I~~Pk 83 (83)
T cd06526 71 LS-SDGVLTIEAPK 83 (83)
T ss_pred eC-CCcEEEEEecC
Confidence 99 7 999999998
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=7.6e-18 Score=117.70 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=69.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCC
Q 032405 36 IGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRL 115 (141)
Q Consensus 36 i~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~ 115 (141)
+..+++.|.|.+++.|+++|||+|++ .++.|+|+|++..+.....+. .++|.|+|.||..||++.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv---~~~~L~V~Gkh~~~~~e~g~~------------~r~F~R~~~LP~~Vd~~~ 74 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKT---KDGFVEVSGKHEEQQKEGGIV------------SKNFTKKIQLPPEVDPVT 74 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEE---ECCEEEEEEEECcccCCCCEE------------EEEEEEEEECCCCCCchh
Confidence 34678999999999999999999999 899999999987322221111 368999999999999999
Q ss_pred ceeEeCCCCEEEEEEe
Q 032405 116 FHPQFRQDGILEGVVM 131 (141)
Q Consensus 116 I~A~~~~dGVL~I~vP 131 (141)
|+|+|..||+|+|..|
T Consensus 75 v~s~l~~dGvL~IeaP 90 (91)
T cd06480 75 VFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEeCCCCeEEEEcC
Confidence 9999999999999988
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3e-18 Score=134.22 Aligned_cols=97 Identities=26% Similarity=0.392 Sum_probs=84.5
Q ss_pred CCCCcceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCC-EEEEEEEEeecc----cCCceeeEEEEeccccCCCeeEE
Q 032405 28 APPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNG-NVQIQGVMTEGD----VAKNSSKVYKMLQQQLCPPGEFT 102 (141)
Q Consensus 28 ~p~~~~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~-~L~I~G~~~~~~----~~~~~~~~er~~~~~~~~~G~F~ 102 (141)
.++..+.||.|++++|++.+++||+++++++|++ +++ .|+|+|++..+. ....+++.|+. +|.|.
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~---~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~-------~g~F~ 150 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEV---EDEKVLTISGERKKEEEESGSGKKWKRVERK-------LGKFK 150 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEe---ccCcEEEEecccccccccccCCccceeehhc-------ccceE
Confidence 3344478899999999999999999999999988 555 799999998221 33467777887 99999
Q ss_pred EEEECCCCCCCCCceeEeCCCCEEEEEEeccCC
Q 032405 103 VSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 103 R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
|+|.||.+++.++|+|.|+ ||||+|+|||...
T Consensus 151 r~~~lPenv~~d~ikA~~~-nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 151 RRFELPENVDVDEIKAEME-NGVLTVVVPKLEP 182 (196)
T ss_pred eeecCCccccHHHHHHHhh-CCeEEEEEecccc
Confidence 9999999999999999999 9999999999987
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.62 E-value=3.9e-15 Score=96.07 Aligned_cols=80 Identities=29% Similarity=0.446 Sum_probs=69.8
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCC
Q 032405 36 IGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRL 115 (141)
Q Consensus 36 i~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~ 115 (141)
++++++.|.|.+++||+.++++.|.+ .++.|.|+|....... .+.. .+.|.+++.||..+++++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~---~~~~l~v~~~~~~~~~------~~~~-------~~~~~~~~~L~~~i~~~~ 64 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEV---EDNVLTISGKREEEEE------RERS-------YGEFERSFELPEDVDPEK 64 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEE---ECCEEEEEEEEcCCCc------ceEe-------eeeEEEEEECCCCcCHHH
Confidence 46889999999999999999999999 8899999998762211 1222 678999999999999999
Q ss_pred ceeEeCCCCEEEEEEec
Q 032405 116 FHPQFRQDGILEGVVMK 132 (141)
Q Consensus 116 I~A~~~~dGVL~I~vPK 132 (141)
++|.|. +|+|+|++||
T Consensus 65 ~~~~~~-~~~l~i~l~K 80 (80)
T cd00298 65 SKASLE-NGVLEITLPK 80 (80)
T ss_pred CEEEEE-CCEEEEEEcC
Confidence 999999 9999999998
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.8e-13 Score=103.84 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=78.2
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCC
Q 032405 32 GLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPV 111 (141)
Q Consensus 32 ~~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~v 111 (141)
+..++..+++.|.|.+|+..+++++|.|.+ .|+.|.|+|+...... .+....| +|.|.|.||.+|
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~---~~~~l~V~gkHeer~d--~~G~v~R----------~F~R~y~LP~~v 127 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKT---DDNTLEVEGKHEEKED--EHGYVSR----------SFVRKYLLPEDV 127 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEe---CCCEEEEEeeeccccC--CCCeEEE----------EEEEEecCCCCC
Confidence 468899999999999999999999999999 8899999999863222 2334444 599999999999
Q ss_pred CCCCceeEeCCCCEEEEEEeccCCC
Q 032405 112 DPRLFHPQFRQDGILEGVVMKHRKA 136 (141)
Q Consensus 112 d~~~I~A~~~~dGVL~I~vPK~~~~ 136 (141)
|++.|++.+..||+|+|..||....
T Consensus 128 dp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 128 DPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred ChhheEEeeCCCceEEEEccCCCCc
Confidence 9999999999999999999998765
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.41 E-value=1.6e-12 Score=86.46 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=63.8
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCC
Q 032405 36 IGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRL 115 (141)
Q Consensus 36 i~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~ 115 (141)
++++++.+.|.+++||+++++++|++ +++.|.|+|. .|.+++.||..|++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~---~~~~l~i~~~-------------------------~~~~~~~l~~~I~~e~ 52 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFC---SDLYLKVNFP-------------------------PYLFELDLAAPIDDEK 52 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEE---ecCEEEEcCC-------------------------CEEEEEeCcccccccc
Confidence 35789999999999999999999998 7888988771 3677899999999999
Q ss_pred ceeEeCCCCEEEEEEeccCC
Q 032405 116 FHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 116 I~A~~~~dGVL~I~vPK~~~ 135 (141)
.+|.+. +|.|+|+|||.++
T Consensus 53 ~~~~~~-~~~l~i~L~K~~~ 71 (78)
T cd06469 53 SSAKIG-NGVLVFTLVKKEP 71 (78)
T ss_pred cEEEEe-CCEEEEEEEeCCC
Confidence 999999 9999999999865
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.23 E-value=9.8e-11 Score=90.55 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=62.2
Q ss_pred ceeEEEcCC-eEEEEEEcCCCCCCC-eEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCC
Q 032405 33 LYDIGVSDK-AYLFRVSLPGARKDT-SNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGP 110 (141)
Q Consensus 33 ~vDi~Et~~-~y~v~~dLPGv~ked-i~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~ 110 (141)
.+|+.+.++ +++|.||||||++++ |+|.++. +.+.|+|+.. +.|.+++.||..
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~------------------------~~~~krv~L~~~ 147 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRVG------------------------EKYLKRVALPWP 147 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEecC------------------------CceEeeEecCCC
Confidence 689999888 699999999999998 9998832 2456776442 234457999976
Q ss_pred CCCCCceeEeCCCCEEEEEEeccCCC
Q 032405 111 VDPRLFHPQFRQDGILEGVVMKHRKA 136 (141)
Q Consensus 111 vd~~~I~A~~~~dGVL~I~vPK~~~~ 136 (141)
+.+.++|.|+ ||||+|+|-|.+..
T Consensus 148 -~~e~~~~t~n-NgILEIri~~~~~~ 171 (177)
T PF05455_consen 148 -DPEITSATFN-NGILEIRIRRTEES 171 (177)
T ss_pred -ccceeeEEEe-CceEEEEEeecCCC
Confidence 6899999999 99999999988764
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.14 E-value=4.3e-10 Score=74.08 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=66.5
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCc
Q 032405 37 GVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLF 116 (141)
Q Consensus 37 ~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I 116 (141)
.++++.+.|.+.+||+.+++++|.+ .++.|+|++... . .+.|...+.|+..|+++..
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~---~~~~l~i~~~~~-------------~-------~~~~~~~~~L~~~I~~~~s 58 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEF---TPKSLTVSVKGG-------------G-------GKEYLLEGELFGPIDPEES 58 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEE---ecCEEEEEeeCC-------------C-------CCceEEeeEccCccchhhc
Confidence 5788999999999999999999999 888999998632 0 2467788999999999999
Q ss_pred eeEeCCCCEEEEEEeccCC
Q 032405 117 HPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 117 ~A~~~~dGVL~I~vPK~~~ 135 (141)
+++++ +|.|+|+|+|.++
T Consensus 59 ~~~~~-~~~l~i~L~K~~~ 76 (84)
T cd06463 59 KWTVE-DRKIEITLKKKEP 76 (84)
T ss_pred EEEEe-CCEEEEEEEECCC
Confidence 99999 9999999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.87 E-value=1.6e-08 Score=67.73 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=67.0
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
|++++++.+.|.+.+||+.++++.|.+ .++.|.|++... . .+.|.-.+.|+..|+++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~---~~~~l~i~~~~~-------------~-------~~~~~~~~~L~~~I~~~ 57 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEF---NEQSLSVSIILP-------------G-------GSEYQLELDLFGPIDPE 57 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---ecCEEEEEEECC-------------C-------CCeEEEecccccccCch
Confidence 678999999999999999999999999 788999987621 0 23466688999999999
Q ss_pred CceeEeCCCCEEEEEEeccCC
Q 032405 115 LFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 115 ~I~A~~~~dGVL~I~vPK~~~ 135 (141)
..++.+. +|.|+|++.|.++
T Consensus 58 ~s~~~~~-~~~vei~L~K~~~ 77 (84)
T cd06466 58 QSKVSVL-PTKVEITLKKAEP 77 (84)
T ss_pred hcEEEEe-CeEEEEEEEcCCC
Confidence 9999999 9999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.32 E-value=1.9e-05 Score=51.30 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=62.1
Q ss_pred ceeEEEcCCeEEEEEEcCCC--CCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGA--RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGP 110 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv--~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~ 110 (141)
.++++++++.+.|.+.+++. ++++++|.+ .+..|.|+...... -.|.-.+.|...
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~---~~~~l~v~~~~~~~--------------------~~~~~~~~L~~~ 58 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDF---TDTSLSVSIKSGDG--------------------KEYLLEGELFGE 58 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEE---ETTEEEEEEEETTS--------------------CEEEEEEEBSS-
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEE---EeeEEEEEEEccCC--------------------ceEEEEEEEeee
Confidence 68999999999999999665 499999999 88999999653211 134556789999
Q ss_pred CCCCCceeEeCCCCEEEEEEec
Q 032405 111 VDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 111 vd~~~I~A~~~~dGVL~I~vPK 132 (141)
|+++..+..+. ++-|+|+|.|
T Consensus 59 I~~~~s~~~~~-~~~i~i~L~K 79 (79)
T PF04969_consen 59 IDPDESTWKVK-DNKIEITLKK 79 (79)
T ss_dssp BECCCEEEEEE-TTEEEEEEEB
T ss_pred EcchhcEEEEE-CCEEEEEEEC
Confidence 99999999999 9999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.19 E-value=1.2e-05 Score=66.16 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=56.5
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCcee
Q 032405 40 DKAYLFRVSLPGA-RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHP 118 (141)
Q Consensus 40 ~~~y~v~~dLPGv-~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A 118 (141)
.+.++|+++|||+ +..+|+|+| .+..|.|..... .|.-.+.||..||.+..+|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV---~~~~l~l~~~~~-----------------------~y~L~l~LP~~V~~~~~~A 313 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDV---SEDRLSLSSPKP-----------------------KYRLDLPLPYPVDEDNGKA 313 (328)
T ss_pred CceEEEEEECCCcCccceeEEEE---eCCEEEEEeCCC-----------------------ceEEEccCCCcccCCCceE
Confidence 7899999999999 889999999 888998877521 2344799999999999999
Q ss_pred EeCCC-CEEEEEEe
Q 032405 119 QFRQD-GILEGVVM 131 (141)
Q Consensus 119 ~~~~d-GVL~I~vP 131 (141)
.|.+. ++|+|+||
T Consensus 314 kf~~~~~~L~vtlp 327 (328)
T PF08190_consen 314 KFDKKTKTLTVTLP 327 (328)
T ss_pred EEccCCCEEEEEEE
Confidence 99833 99999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.12 E-value=5.2e-05 Score=53.54 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=64.8
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
+++++.+++...|.+.+||+ +++.|.+ ....|.|++.... .. -.|.-.+.|...|+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~---~~~~l~v~~~~~~--~~-----------------~~y~~~~~L~~~I~ 57 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKL---EPTSLSFKAKGGG--GG-----------------KKYEFDLEFYKEID 57 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEE---ECCEEEEEEEcCC--CC-----------------eeEEEEeEhhhhcc
Confidence 68999999999999999998 7889988 8899999985311 00 12445679999999
Q ss_pred CCCceeEeCCCCEEEEEEeccC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
++.-+..+. ++-|+|+|.|.+
T Consensus 58 pe~s~~~v~-~~kveI~L~K~~ 78 (108)
T cd06465 58 PEESKYKVT-GRQIEFVLRKKE 78 (108)
T ss_pred ccccEEEec-CCeEEEEEEECC
Confidence 999999999 999999999987
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.97 E-value=7.4e-05 Score=50.34 Aligned_cols=77 Identities=8% Similarity=0.164 Sum_probs=64.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPR 114 (141)
Q Consensus 35 Di~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~ 114 (141)
|++++++...|.+.++|+.++++.|++ .++.|.+++.... . ..|.-.+.|...|+++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~---~~~~l~~~~~~~~---~-----------------~~y~~~~~L~~~I~p~ 57 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEF---EKRELSATVKLPS---G-----------------NDYSLKLHLLHPIVPE 57 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEE---eCCEEEEEEECCC---C-----------------CcEEEeeecCceecch
Confidence 678999999999999999999999999 7889999886320 0 0244467899999999
Q ss_pred CceeEeCCCCEEEEEEeccCC
Q 032405 115 LFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 115 ~I~A~~~~dGVL~I~vPK~~~ 135 (141)
.-+.... .+-++|+|.|.+.
T Consensus 58 ~s~~~v~-~~kiei~L~K~~~ 77 (84)
T cd06489 58 QSSYKIL-STKIEIKLKKTEA 77 (84)
T ss_pred hcEEEEe-CcEEEEEEEcCCC
Confidence 8999998 8889999999764
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.89 E-value=0.00015 Score=48.48 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=60.4
Q ss_pred eEEEcCCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCC
Q 032405 35 DIGVSDKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDP 113 (141)
Q Consensus 35 Di~Et~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~ 113 (141)
++.++++...|.+.+| |+.++|+.|++ .++.|+|+... . .+ .-...|...|++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~---~~~~l~v~~~~-----~-~~-----------------~l~~~L~~~I~~ 55 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEI---TPKHLKVGVKG-----G-EP-----------------LLDGELYAKVKV 55 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEE---EcCEEEEEECC-----C-Cc-----------------eEcCcccCceeE
Confidence 5789999999999997 79999999999 78899988641 0 01 012358889999
Q ss_pred CCceeEeCCC-CEEEEEEeccCC
Q 032405 114 RLFHPQFRQD-GILEGVVMKHRK 135 (141)
Q Consensus 114 ~~I~A~~~~d-GVL~I~vPK~~~ 135 (141)
+...-.+. + ..|+|+|+|.++
T Consensus 56 ~~s~w~~~-~~~~v~i~L~K~~~ 77 (85)
T cd06467 56 DESTWTLE-DGKLLEITLEKRNE 77 (85)
T ss_pred cCCEEEEe-CCCEEEEEEEECCC
Confidence 99888999 8 999999999876
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.76 E-value=0.00045 Score=46.83 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 34 YDIGVSDKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 34 vDi~Et~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
++++.|++...|.+.+| |++++|++|++ ..+.|++... .+ .. + -.-.|...|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~---~~~~l~v~~~--~~----~~----------------~-~~g~L~~~I~ 54 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF---LPDHISIALK--DQ----AP----------------L-LEGKLYSSID 54 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEE---ecCEEEEEeC--CC----Ce----------------E-EeCcccCccc
Confidence 36789999999999996 99999999999 8889988652 00 00 0 1237888999
Q ss_pred CCCceeEeCCCC-EEEEEEeccCCC
Q 032405 113 PRLFHPQFRQDG-ILEGVVMKHRKA 136 (141)
Q Consensus 113 ~~~I~A~~~~dG-VL~I~vPK~~~~ 136 (141)
++.-+=..+ +| .|+|+|.|.++.
T Consensus 55 ~d~Stw~i~-~~~~l~i~L~K~~~~ 78 (85)
T cd06493 55 HESSTWIIK-ENKSLEVSLIKKDEG 78 (85)
T ss_pred ccCcEEEEe-CCCEEEEEEEECCCC
Confidence 998777777 77 799999998753
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.72 E-value=0.00076 Score=45.98 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=65.7
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
..|++.+++...|.+-+.|+.++++.+.+ +++.|+++..-.. . -.|.-.+.|-..|+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~---~~~~l~v~~~~~~---~-----------------~~y~~~l~L~~~I~ 58 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEA---NSTVLTIHIVFEG---N-----------------KEFQLDIELWGVID 58 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEe---cCCEEEEEEECCC---C-----------------ceEEEEeeccceEC
Confidence 47999999999999999999999999988 7788888764221 0 02555788999999
Q ss_pred CCCceeEeCCCCEEEEEEeccCC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
++..+-... .+-++|++.|.++
T Consensus 59 ~~~s~~~v~-~~kvei~L~K~~~ 80 (87)
T cd06488 59 VEKSSVNML-PTKVEIKLRKAEP 80 (87)
T ss_pred hhHcEEEec-CcEEEEEEEeCCC
Confidence 999888888 9999999999875
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.53 E-value=0.002 Score=43.71 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=63.6
Q ss_pred ceeEEEcCCeEEEEEEcCCCCC---CCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEE-ECC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARK---DTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSF-SLP 108 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~k---edi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~-~LP 108 (141)
.++++++++...|.+.+|++.+ ++++|++ ..+.|.|++... ... .|.-.+ +|-
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~---~~~~l~v~~~~~---~~~-----------------~~~~~~~~L~ 59 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEF---TERSFELKVHDL---NGK-----------------NYRFTINRLL 59 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEe---cCCEEEEEEECC---CCc-----------------EEEEEehHhh
Confidence 5789999999999999999987 9999988 789999988421 111 122234 388
Q ss_pred CCCCCCCceeEeCCCCEEEEEEeccCC
Q 032405 109 GPVDPRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 109 ~~vd~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
..|+++..+.... ++-++|+|.|.++
T Consensus 60 ~~I~~e~s~~~~~-~~ki~i~L~K~~~ 85 (92)
T cd06468 60 KKIDPEKSSFKVK-TDRIVITLAKKKE 85 (92)
T ss_pred CccCccccEEEEe-CCEEEEEEEeCCC
Confidence 8999999999999 8999999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.03 E-value=0.012 Score=40.96 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=61.2
Q ss_pred cceeEEEcCCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCC
Q 032405 32 GLYDIGVSDKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGP 110 (141)
Q Consensus 32 ~~vDi~Et~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~ 110 (141)
+.+++..|.+...|.+.+| |+++.|+.|.+ ..+.|.|.-. . . +-. .| .|...
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i---~~~~l~V~~~--g--------~-~~l-------~G------~L~~~ 58 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL---GSRDISLAVK--G--------Q-EVL-------KG------KLFDS 58 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEE---EcCEEEEEEC--C--------E-EEE-------cC------cccCc
Confidence 3789999999999999998 89999999999 8899988641 0 0 111 34 57788
Q ss_pred CCCCCceeEeCCCC-EEEEEEeccCC
Q 032405 111 VDPRLFHPQFRQDG-ILEGVVMKHRK 135 (141)
Q Consensus 111 vd~~~I~A~~~~dG-VL~I~vPK~~~ 135 (141)
|+++.-.=.++ +| +|+|+|.|...
T Consensus 59 I~~destWtle-d~k~l~I~L~K~~~ 83 (93)
T cd06494 59 VVADECTWTLE-DRKLIRIVLTKSNR 83 (93)
T ss_pred cCcccCEEEEE-CCcEEEEEEEeCCC
Confidence 99998888899 76 58999999864
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.45 E-value=0.093 Score=37.32 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=58.8
Q ss_pred cceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCC
Q 032405 32 GLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPV 111 (141)
Q Consensus 32 ~~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~v 111 (141)
|.++++.+.+.+.|++++|+ .+|++|++ +.+.|+++|... .+.. |.-.+.|=..|
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l---~~~~l~f~~~~~---~g~~-----------------y~~~l~l~~~I 56 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDF---EKSKLTFSCLNG---DNVK-----------------IYNEIELYDRV 56 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEE---ecCEEEEEEECC---CCcE-----------------EEEEEEeeccc
Confidence 47899999999999999999 47888888 788999998421 1111 22256777888
Q ss_pred CCCCceeEeCCCCEEEEEEeccCC
Q 032405 112 DPRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 112 d~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
+++.-+-... .--++|.|.|.+.
T Consensus 57 ~pe~Sk~~v~-~r~ve~~L~K~~~ 79 (106)
T cd00237 57 DPNDSKHKRT-DRSILCCLRKGKE 79 (106)
T ss_pred CcccCeEEeC-CceEEEEEEeCCC
Confidence 9887666666 6678889999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.26 E-value=0.033 Score=46.97 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=64.9
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
..|++.+++...|.+-+.|+.++++.|++ ..+.|.|+-..... . .|.-.+.|-..|+
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~~---~~~~l~v~~~~~~~---~-----------------~y~~~~~L~~~I~ 214 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVDF---GEQILSVVIEVPGE---D-----------------AYHLQPRLFGKII 214 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEEe---ecCEEEEEEecCCC---c-----------------ceeeccccccccc
Confidence 78999999999999999999999999998 78889888643210 0 2333578889999
Q ss_pred CCCceeEeCCCCEEEEEEeccCC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
++..+-... ---++|+|.|.+.
T Consensus 215 p~~s~~~v~-~~Kiei~l~K~~~ 236 (356)
T PLN03088 215 PDKCKYEVL-STKIEIRLAKAEP 236 (356)
T ss_pred ccccEEEEe-cceEEEEEecCCC
Confidence 998888888 7789999999764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.91 E-value=0.03 Score=43.90 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=53.7
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
+.|+++++...+|.+-.+||.++|++|++ ..++|.|.-+-.... . |.-...|-..|.
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~~---s~~~l~~~~~~~~g~---~-----------------~~l~~~L~~~I~ 61 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVEI---SENTLSIVIQLPSGS---E-----------------YNLQLKLYHEII 61 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEEe---ecceEEEEEecCCch---h-----------------hhhhHHhccccc
Confidence 68999999999999999999999999999 778887766543111 1 111233555666
Q ss_pred CCCceeEeCCCCEEEEEEeccC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
++..+-..- ---++|+|+|.+
T Consensus 62 pe~~s~k~~-stKVEI~L~K~~ 82 (196)
T KOG1309|consen 62 PEKSSFKVF-STKVEITLAKAE 82 (196)
T ss_pred ccceeeEee-eeeEEEEecccc
Confidence 665444444 445677777743
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.50 E-value=0.36 Score=32.80 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=53.9
Q ss_pred eeEEEcCCeEEEEEEcCC--CCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCC
Q 032405 34 YDIGVSDKAYLFRVSLPG--ARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPV 111 (141)
Q Consensus 34 vDi~Et~~~y~v~~dLPG--v~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~v 111 (141)
.|++.+++...|.+-..+ ..++++.+.. ..+.|+|+-.-. . -.|...+.|=..|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~---~~~~l~v~~~~~----~-----------------~~~~~~~~L~~~I 56 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDD---QQRELRVEIILG----D-----------------KSYLLHLDLSNEV 56 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEEC---CCCEEEEEEECC----C-----------------ceEEEeeeccccC
Confidence 489999999999999885 5555555555 556788765321 0 0244567888888
Q ss_pred CCC-CceeEeCCCCEEEEEEeccCCC
Q 032405 112 DPR-LFHPQFRQDGILEGVVMKHRKA 136 (141)
Q Consensus 112 d~~-~I~A~~~~dGVL~I~vPK~~~~ 136 (141)
+++ .++..-. -|=++|++.|.++.
T Consensus 57 ~~~~~~~~~~~-~~KVEI~L~K~e~~ 81 (87)
T cd06490 57 QWPCEVRISTE-TGKIELVLKKKEPE 81 (87)
T ss_pred CCCcEEEEccc-CceEEEEEEcCCCC
Confidence 877 4444444 46899999998753
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.23 E-value=0.88 Score=31.01 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=53.1
Q ss_pred EEcCCeEEEEEEcC-C--CCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCC
Q 032405 37 GVSDKAYLFRVSLP-G--ARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDP 113 (141)
Q Consensus 37 ~Et~~~y~v~~dLP-G--v~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~ 113 (141)
..|.++..|.+.+| | +++.|++|.+ ....|.|.-.. + .. -. -| .|...|++
T Consensus 4 ~QT~~ev~v~v~l~~~~~~~~kdv~v~i---~~~~l~v~~~g--~----~~----~i-------~G------~L~~~V~~ 57 (87)
T cd06492 4 TQTLSEVELKVPFKVSFRLKGKDVVVDI---QRKHLKVGLKG--Q----PP----II-------DG------ELYNEVKV 57 (87)
T ss_pred EeecCEEEEEEECCCCCCccceEEEEEE---ecCEEEEEECC--C----ce----EE-------eC------cccCcccc
Confidence 46778889999996 3 8899999998 78888874421 0 00 01 12 56788999
Q ss_pred CCceeEeCCCC-EEEEEEeccCC
Q 032405 114 RLFHPQFRQDG-ILEGVVMKHRK 135 (141)
Q Consensus 114 ~~I~A~~~~dG-VL~I~vPK~~~ 135 (141)
+.-.=.++ || .|.|+|-|.++
T Consensus 58 des~Wtle-d~~~l~i~L~K~~~ 79 (87)
T cd06492 58 EESSWLIE-DGKVVTVNLEKINK 79 (87)
T ss_pred cccEEEEe-CCCEEEEEEEECCC
Confidence 88888898 86 99999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=89.97 E-value=5.2 Score=28.21 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=57.9
Q ss_pred ceeEEEcCCeEEEEEEcC-C-CCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCC
Q 032405 33 LYDIGVSDKAYLFRVSLP-G-ARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGP 110 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLP-G-v~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~ 110 (141)
.+-+..|.++..|.+.+| | ++..++.|.+ ....|.|.-..... ... -. .| .|+..
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i---~~~~l~v~~~~~~~------~~~-~i-------~G------~L~~~ 62 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL---QSSSIRVSVRDGGG------EKV-LM-------EG------EFTHK 62 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEE---EcCEEEEEEecCCC------Cce-EE-------eC------cccCc
Confidence 577889999999999999 6 4578899988 78888876642100 000 01 23 57788
Q ss_pred CCCCCceeEeCCCC-EEEEEEeccCC
Q 032405 111 VDPRLFHPQFRQDG-ILEGVVMKHRK 135 (141)
Q Consensus 111 vd~~~I~A~~~~dG-VL~I~vPK~~~ 135 (141)
|+++.-.=.++ || .|.|+|-|...
T Consensus 63 V~~des~Wtle-d~~~l~I~L~K~~~ 87 (102)
T cd06495 63 INTENSLWSLE-PGKCVLLSLSKCSE 87 (102)
T ss_pred ccCccceEEEe-CCCEEEEEEEECCC
Confidence 99988888899 86 58999999753
No 42
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=75.51 E-value=4.6 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEE
Q 032405 41 KAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQG 73 (141)
Q Consensus 41 ~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G 73 (141)
..|.-.+.||.+..+.++.++ .||.|+|.-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~---~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKY---ENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEE---ECCEEEEEE
Confidence 457777889999999999988 899999974
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=73.74 E-value=7 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccC
Q 032405 96 CPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 96 ~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
|--..|.-+..||. ++.+.|+-++. ||.|+|+--+..
T Consensus 5 ~~~~~~~v~adlPG-~~kedI~V~v~-~~~L~I~ger~~ 41 (87)
T cd06482 5 CDSSNVLASVDVCG-FEPDQVKVKVK-DGKVQVSAEREN 41 (87)
T ss_pred ccCCEEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEEec
Confidence 33457888999996 89999999999 999999987754
No 44
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=71.22 E-value=6.7 Score=26.40 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEE
Q 032405 40 DKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQG 73 (141)
Q Consensus 40 ~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G 73 (141)
...|.-.+.|| +++.+.++-++ .||.|+|.-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~---~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFL---ENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEE---ECCEEEEEe
Confidence 46899999999 69999999998 899999864
No 45
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=69.32 E-value=3.8 Score=34.61 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=56.7
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
++|..+|.....|-+--|-|..++|.+-+ +.++|.|+-+.+. . .-.|.-.++|-..|+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~---e~NTL~I~~q~~~------------~-------~~~~~~~~~Ly~ev~ 235 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVL---EGNTLSISYQPRR------------L-------RLWNDITISLYKEVY 235 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceee---cCCcceeeeeccc------------c-------chHHHhhhhhhhhcC
Confidence 78999999999999999999999999988 8899999887541 1 012333556666777
Q ss_pred CCCceeEeCCCCEEEEEEeccC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
++..+-..- --+++|+|-|.+
T Consensus 236 P~~~s~k~f-sK~~e~~l~KV~ 256 (368)
T COG5091 236 PDIRSIKSF-SKRVEVHLRKVE 256 (368)
T ss_pred cchhhhhhc-chhheehhhhhh
Confidence 776555555 456666666543
No 46
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=67.67 E-value=14 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=26.3
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEE
Q 032405 41 KAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQG 73 (141)
Q Consensus 41 ~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G 73 (141)
.+|.=.+.|| +|+.+.|.-++ ..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l--~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASL--SPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEe--CCCCeEEEEc
Confidence 7888899999 89999888766 3499999986
No 47
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=67.51 E-value=7.8 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=29.2
Q ss_pred CeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 98 PGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 98 ~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
-..|.-.+.||. ++++.|+-.++ ||.|+|+--+.
T Consensus 6 ~d~y~v~~dlpG-~~~edi~V~v~-~~~L~I~g~~~ 39 (83)
T cd06476 6 DDKYQVFLDVCH-FTPDEITVRTV-DNLLEVSARHP 39 (83)
T ss_pred CCeEEEEEEcCC-CCHHHeEEEEE-CCEEEEEEEEc
Confidence 357888999996 99999999999 99999987653
No 48
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=66.88 E-value=10 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred eEEEEEEcC-CCCCCCeEEEEEecc-CCEEEEEEEE
Q 032405 42 AYLFRVSLP-GARKDTSNLKCIIRR-NGNVQIQGVM 75 (141)
Q Consensus 42 ~y~v~~dLP-Gv~kedi~V~ve~~~-~~~L~I~G~~ 75 (141)
+|.=.+.|| +|+.+.|+-++ . +|.|+|...+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~---~~dGvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSL---SPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEe---CCCCEEEEEEeC
Confidence 488889999 79999999888 6 9999998754
No 49
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.52 E-value=12 Score=24.03 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred EcCCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEE
Q 032405 38 VSDKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQG 73 (141)
Q Consensus 38 Et~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G 73 (141)
-....|.-.+.|| +++.+.++..+ .+|.|+|..
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~---~~G~L~I~~ 86 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASL---ENGVLTITL 86 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEE---eCCEEEEEE
Confidence 3468899999999 78999899888 889999975
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=66.51 E-value=8.3 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=28.8
Q ss_pred eEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccC
Q 032405 100 EFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
.|.-.+.||. ++++.|+-.++ +|.|+|+--+..
T Consensus 8 ~~~v~~dlpG-~~~edI~V~v~-~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVVQ-FRPEDIIIQVF-EGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcCC-CCHHHeEEEEE-CCEEEEEEEEcc
Confidence 5777899996 99999999999 999999986643
No 51
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=66.20 E-value=14 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=26.7
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEEeccCCEEEEEEEE
Q 032405 41 KAYLFRVSLPG-ARKDTSNLKCIIRRNGNVQIQGVM 75 (141)
Q Consensus 41 ~~y~v~~dLPG-v~kedi~V~ve~~~~~~L~I~G~~ 75 (141)
+.|.+.++||+ +++++....+ .++.|.|.=..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~---~~~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKI---GNGVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEE---eCCEEEEEEEe
Confidence 56888899997 8999999988 88999988544
No 52
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=65.55 E-value=11 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=28.8
Q ss_pred eeEEEEEECCCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 99 GEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 99 G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
..|.-.+.||. ++++.|+-.+. +|.|+|+--+.
T Consensus 7 ~~~~v~~dlpG-~~~edI~V~v~-~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVKH-FSPEELSVKVL-GDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEEc
Confidence 57888999995 99999999999 99999987553
No 53
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=64.97 E-value=13 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCCCCCCeEEEEEeccCCEEEEEEEEe
Q 032405 50 PGARKDTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 50 PGv~kedi~V~ve~~~~~~L~I~G~~~ 76 (141)
|+++..+|+|++ .+|.++++|...
T Consensus 12 ~~~~~~~i~v~v---~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSV---ENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEE---ECTEEEEEEEES
T ss_pred cccCCCeEEEEE---ECCEEEEEeeCc
Confidence 356666899998 899999999986
No 54
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=63.94 E-value=14 Score=24.83 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=30.1
Q ss_pred eeEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccCC
Q 032405 99 GEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 99 G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
+.|.-.+.||. ++.+.|+-.++ ++.|+|+-.+...
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~~-~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEVE-NNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEEccc
Confidence 57888999997 89999999999 9999999665443
No 55
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=63.35 E-value=13 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.0
Q ss_pred cCCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEe
Q 032405 39 SDKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 39 t~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~ 76 (141)
....|.-.+.|| +++.+.++..+ .+|.|+|...+.
T Consensus 53 ~~~~f~r~~~lP~~vd~~~i~a~~---~~GvL~I~~pk~ 88 (102)
T PF00011_consen 53 RYGSFERSIRLPEDVDPDKIKASY---ENGVLTITIPKK 88 (102)
T ss_dssp -SEEEEEEEE-STTB-GGG-EEEE---TTSEEEEEEEBS
T ss_pred ccceEEEEEcCCCcCCcceEEEEe---cCCEEEEEEEcc
Confidence 346788899999 68899999888 899999999876
No 56
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=61.90 E-value=57 Score=23.47 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=47.8
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
.+.|...++ ..+.++..|- .++++. ++++|+|+...........++ ... ....-.-.+.||....
T Consensus 67 ~V~I~~~~~-~~i~v~~~~k---~~~~~~---~~~~L~I~~~~~~~~~~~~~~--~~~------~~~~~~i~I~lP~~~~ 131 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEYNGK---KPEISV---EGGTLTIKSKDRESFFFKGFN--FNN------SDNKSKITIYLPKDYK 131 (166)
T ss_pred eEEEEEcCC-ccEEEEEcCc---EEEEEE---cCCEEEEEEecccccccceEE--Ecc------cCCCcEEEEEECCCCc
Confidence 455555444 4456666222 566766 789999988722110000000 000 0124455799999988
Q ss_pred CCCceeEeCCCCEEEEE
Q 032405 113 PRLFHPQFRQDGILEGV 129 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~ 129 (141)
.++|+..-. +|=++|.
T Consensus 132 l~~i~i~~~-~G~i~i~ 147 (166)
T PF13349_consen 132 LDKIDIKTS-SGDITIE 147 (166)
T ss_pred eeEEEEEec-cccEEEE
Confidence 889999998 9988775
No 57
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=61.54 E-value=17 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred CeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 98 PGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 98 ~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
-..|.-.+.||. ++++.|+-... +|.|+|+--+.
T Consensus 9 ~~~~~v~~dlpG-~~~edi~V~v~-~~~L~I~g~~~ 42 (86)
T cd06497 9 RDKFTIYLDVKH-FSPEDLTVKVL-DDYVEIHGKHS 42 (86)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEEc
Confidence 457888999996 99999999999 99999997553
No 58
>PF14913 DPCD: DPCD protein family
Probab=60.43 E-value=50 Score=26.19 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred EEcCCeEEEEE-EcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCC------
Q 032405 37 GVSDKAYLFRV-SLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPG------ 109 (141)
Q Consensus 37 ~Et~~~y~v~~-dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~------ 109 (141)
.+|..+|.-++ .|| ..++.-+|+|+- +++.++|+-..+ +| ...|++|+
T Consensus 92 ~dTk~~fqWRIRNLP-YP~dvYsVtvd~-~~r~ivvRTtNK------KY-----------------yKk~~IPDl~R~~l 146 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLP-YPKDVYSVTVDE-DERCIVVRTTNK------KY-----------------YKKFSIPDLDRCGL 146 (194)
T ss_pred EcCccceEEEEccCC-CCccceEEEEcC-CCcEEEEECcCc------cc-----------------eeEecCCcHHhhCC
Confidence 56778888888 688 888989988832 123577765432 23 33455554
Q ss_pred CCCCCCceeEeCCCCEEEEEEecc
Q 032405 110 PVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 110 ~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
+.+.++++-.+. |--|.|+..|-
T Consensus 147 ~l~~~~ls~~h~-nNTLIIsYkKP 169 (194)
T PF14913_consen 147 PLEQSALSFAHQ-NNTLIISYKKP 169 (194)
T ss_pred Ccchhhceeeee-cCeEEEEecCc
Confidence 467889999999 99999998874
No 59
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=57.41 E-value=40 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=27.4
Q ss_pred cCCEEEEEEEEeecc---cCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 65 RNGNVQIQGVMTEGD---VAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 65 ~~~~L~I~G~~~~~~---~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
++|.|.|.+.+.... ....+ ..-+......+.||.|+-+++||.
T Consensus 63 ~~G~L~i~a~~~~~~~~~~~~~~-tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 63 EDGNLVLSATRHPGTELGNGYKV-TTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred ECCEEEEEEEcCCCCcCCCCccE-EEEEEEeCCceEEEEEEEEEEcCC
Confidence 789999999876221 11122 112222244456999999999995
No 60
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=56.76 E-value=21 Score=23.42 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.1
Q ss_pred eEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccCC
Q 032405 100 EFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRK 135 (141)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~~ 135 (141)
.|.-.+.||. +.++.|+-..+ ++.|+|+--+...
T Consensus 8 ~~~v~~dlpG-~~~edI~v~v~-~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVKG-FKPEELKVKVS-DNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECCC-CCHHHcEEEEE-CCEEEEEEEEeee
Confidence 6888999997 99999999999 9999999876543
No 61
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=54.98 E-value=8.5 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.603 Sum_probs=10.8
Q ss_pred CCceeEeCCCCEEEE
Q 032405 114 RLFHPQFRQDGILEG 128 (141)
Q Consensus 114 ~~I~A~~~~dGVL~I 128 (141)
..|.|.|+ ||||.-
T Consensus 3 ~~I~aiYe-~GvlkP 16 (60)
T PF01954_consen 3 KVIEAIYE-NGVLKP 16 (60)
T ss_dssp --EEEEEE-TTEEEE
T ss_pred ceEEEEEE-CCEEEE
Confidence 35899999 999974
No 62
>PRK10743 heat shock protein IbpA; Provisional
Probab=54.48 E-value=25 Score=25.99 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=28.1
Q ss_pred eeEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccC
Q 032405 99 GEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 99 G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
..|.-...||. ++.+.|+-+++ +|+|+|+--+..
T Consensus 45 ~~~~v~aelPG-v~kedi~V~v~-~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVAG-FAESELEITAQ-DNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEECc
Confidence 45777889995 89999999999 999999976543
No 63
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=51.93 E-value=43 Score=25.98 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEe
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVM 131 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vP 131 (141)
+++++|++ .++.++|+|. -|+.++.|+-| .++...+ +|-|.|+..
T Consensus 13 P~~V~v~i---~~~~v~VkGp-----------------------~G~L~~~~~~~------~v~i~~~-~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEI---EGLVVTVKGP-----------------------KGELTRDFWYP------GVTISVE-DGKVVIETE 57 (180)
T ss_pred CCCCEEEE---ECCEEEEECC-----------------------CeEEEEEecCC------cEEEEEE-CCEEEEEEC
Confidence 47888988 7899999996 35555555432 3555677 887777755
No 64
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.90 E-value=31 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEe
Q 032405 40 DKAYLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 40 ~~~y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~ 76 (141)
...|.-.+.|| +|+.+.+..++ .||.|+|.=.+.
T Consensus 99 ~~~f~r~~~Lp~~v~~~~~~A~~---~nGvL~I~lpk~ 133 (146)
T COG0071 99 YGEFERTFRLPEKVDPEVIKAKY---KNGLLTVTLPKA 133 (146)
T ss_pred eeeEEEEEECcccccccceeeEe---eCcEEEEEEecc
Confidence 35677778888 47777788888 899999988765
No 65
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=51.30 E-value=50 Score=25.34 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=31.6
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEec
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
+++++|++ .++.++|+|. -|+..+.|. |. .++-..+ ++-|.++.+.
T Consensus 7 P~~V~v~i---~~~~i~vkGp-----------------------~G~L~~~~~-~~-----~v~i~~~-~~~i~v~~~~ 52 (170)
T TIGR03653 7 PEGVSVTI---EGNIVTVKGP-----------------------KGEVTRELW-YP-----GIEISVE-DGKVVIETDF 52 (170)
T ss_pred CCCCEEEE---eCCEEEEECC-----------------------CeEEEEEEe-CC-----cEEEEEe-CCEEEEEeCC
Confidence 47888988 7889999996 355555553 22 3455678 8888887543
No 66
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=51.09 E-value=8.3 Score=29.40 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=18.9
Q ss_pred CCCCCCCCCceeEeCCCCEEEEEEe
Q 032405 107 LPGPVDPRLFHPQFRQDGILEGVVM 131 (141)
Q Consensus 107 LP~~vd~~~I~A~~~~dGVL~I~vP 131 (141)
|-+.++.+.-.+.|. ||||+|.|+
T Consensus 65 l~e~~~~~~~Dv~y~-~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYA-DGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccc-cceEEEEec
Confidence 334555577789999 999999987
No 67
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=50.82 E-value=46 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEec
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
+++++|++ .++.|+|+|. -|+..+.| |. .++...+ ++-|.+..+.
T Consensus 11 P~~V~v~~---~~~~v~v~Gp-----------------------~G~l~~~l--~~-----~i~i~~~-~~~i~v~~~~ 55 (175)
T TIGR03654 11 PAGVEVTI---DGNVVTVKGP-----------------------KGELSRTL--HP-----GVTVKVE-DGQLTVSRPN 55 (175)
T ss_pred CCCcEEEE---eCCEEEEEcC-----------------------CeEEEEEc--CC-----CeEEEEE-CCEEEEEecC
Confidence 47889988 7889999996 35555555 44 3455667 7777777553
No 68
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=50.39 E-value=35 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=28.6
Q ss_pred eeEEEEEECCCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 99 GEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 99 G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
..|.-.+.||. ++++.|+-..+ +|.|+|+--|.
T Consensus 8 ~~~~v~~dlpG-~~pedi~V~v~-~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVSD-FSPEDIIVTTS-NNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECCC-CCHHHeEEEEE-CCEEEEEEEEe
Confidence 46788899995 99999999999 99999987654
No 69
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=49.84 E-value=46 Score=26.03 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEec
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK 132 (141)
|++++|++ .++.++|+|. .|+.+|.|.=|. ..|....+ ||-|.|+-+.
T Consensus 13 P~~V~V~i---~~~~v~VkGp-----------------------~G~L~~~~~~~~----~~i~i~~~-~~~i~v~~~~ 60 (190)
T PTZ00027 13 PEGVTVTV---KSRKVTVTGK-----------------------YGELTRSFRHLP----VDIKLSKD-GKYIKVEMWF 60 (190)
T ss_pred CCCCEEEE---ECCEEEEECC-----------------------CceEEEEecCCC----ceEEEEeC-CCEEEEEeCC
Confidence 58899998 8889999996 355555554221 25666678 8888777553
No 70
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.71 E-value=41 Score=23.71 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=28.5
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEE
Q 032405 34 YDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVM 75 (141)
Q Consensus 34 vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~ 75 (141)
+++.+.+| .|.+..||.++ |+|.. +++.|.|.+..
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~---E~kkL~v~t~~ 60 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKP---ENKKLLVNTTD 60 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEec---ccceEEEeccc
Confidence 67888888 77889999987 66666 78999999844
No 71
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=48.21 E-value=84 Score=25.78 Aligned_cols=44 Identities=7% Similarity=-0.063 Sum_probs=27.0
Q ss_pred cCCEEEEEEEEee-cc----------cCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 65 RNGNVQIQGVMTE-GD----------VAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 65 ~~~~L~I~G~~~~-~~----------~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
.+|.|.|++.+.. .. ....|. .-+.+.+..+.||.|+-+++||.
T Consensus 49 ~dG~L~i~a~~e~~~~~~~~~~~~~~~~~~yt-Sg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 49 SNGILELTMRRNANNTTFWDQQQVPDGPTYFT-SGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred eCCEEEEEEEeccCCCcccccccccCCCCCEe-eEEEEecCcceeeEEEEEEECCC
Confidence 7999999998752 11 111121 22333344567999999999754
No 72
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=47.57 E-value=44 Score=22.39 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred CeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccC
Q 032405 98 PGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 98 ~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
-..|.-.+.||. ++++.|+-.+. ++.|+|+--+.+
T Consensus 9 ~~~~~v~~dlPG-~~~edi~V~v~-~~~L~I~g~~~~ 43 (86)
T cd06475 9 ADRWKVSLDVNH-FAPEELVVKTK-DGVVEITGKHEE 43 (86)
T ss_pred CCeEEEEEECCC-CCHHHEEEEEE-CCEEEEEEEECc
Confidence 457888999996 99999999999 999999986643
No 73
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=47.40 E-value=1.2e+02 Score=25.36 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=61.8
Q ss_pred ceeEEEcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCC
Q 032405 33 LYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVD 112 (141)
Q Consensus 33 ~vDi~Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd 112 (141)
.-|++.|+...+|.+..-|.-++.-.|+. ..-+|-|+-.-. + . .-+|.-.+.|=.-|+
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iea---n~~~l~V~ivf~-~-g-----------------na~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEA---NGTTLHVSIVFG-F-G-----------------NASFDLDYKLWGVVN 273 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeee---CCeEEEEEEEec-C-C-----------------Cceeeccceeeeeec
Confidence 57999999999999999999998887776 555676665532 0 0 124555667777888
Q ss_pred CCCceeEeCCCCEEEEEEeccCCC
Q 032405 113 PRLFHPQFRQDGILEGVVMKHRKA 136 (141)
Q Consensus 113 ~~~I~A~~~~dGVL~I~vPK~~~~ 136 (141)
.++.++.+- .--.+|+|+|.++.
T Consensus 274 ve~s~v~m~-~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 274 VEESSVVMG-ETKVEISLKKAEPG 296 (320)
T ss_pred hhhceEEee-cceEEEEEeccCCC
Confidence 999999998 88899999998763
No 74
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=46.46 E-value=54 Score=25.15 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=30.5
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCCCCCCCCceeEeCCCCEEEEEEe
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVM 131 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vP 131 (141)
|++++|++ .++.|+|+|. -|...+.| |.. ++...+ ++-|.+...
T Consensus 12 P~~V~v~~---~~~~v~vkGp-----------------------~G~l~~~~--~~~-----v~i~~~-~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTI---NGNVVTVKGP-----------------------KGELSRTL--NPD-----VTVKVE-DNEITVTRP 55 (178)
T ss_pred CCCCEEEE---ECCEEEEECC-----------------------CEEEEEEc--CCC-----eEEEEE-CCEEEEEcC
Confidence 37889988 7899999996 45566655 443 344567 777777654
No 75
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=45.11 E-value=51 Score=25.42 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=27.4
Q ss_pred CCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEeccccCCCeeEEEEEECCC
Q 032405 54 KDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~~~~~~~G~F~R~~~LP~ 109 (141)
++++. + ++|.|.|+..+..... ..+.. -+..+++.+.||.|+-++++|.
T Consensus 31 ~~nv~--v---~~g~L~l~~~~~~~~~-~~~ts-g~i~S~~~f~yG~~ear~k~~~ 79 (212)
T cd02175 31 ADNVE--F---SDGGLALTLTNDTYGE-KPYAC-GEYRTRGFYGYGRYEVRMKPAK 79 (212)
T ss_pred cccEE--E---ECCeEEEEEeCCcCCC-Ccccc-ceEEECceEEeeEEEEEEEcCC
Confidence 56554 4 5788999887652111 11111 1111222345899999999985
No 76
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=45.01 E-value=45 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.4
Q ss_pred eEEEEEECCCCCCCCCceeEeCCCCEEEEEEeccC
Q 032405 100 EFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHR 134 (141)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~~ 134 (141)
.|.-.+.||. +.++.|+-.++ ++.|+|+--+..
T Consensus 8 ~~~v~~dlpG-~~~edI~V~v~-~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVRG-FSPEDLSVRVD-GRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECCC-CChHHeEEEEE-CCEEEEEEEEee
Confidence 5777899996 99999999999 999999876543
No 77
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=44.38 E-value=86 Score=26.11 Aligned_cols=50 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCCeEEEEEeccCCEEEEEEEEeecccCCceeeEEEEec--cccCCCeeEEEEEECCC
Q 032405 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQ--QQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 53 ~kedi~V~ve~~~~~~L~I~G~~~~~~~~~~~~~~er~~~--~~~~~~G~F~R~~~LP~ 109 (141)
.++++ .+ .+|.|.|++.+..... ..|. .-|... +..+.+|.|+-+++||.
T Consensus 39 ~~~nv--~v---~~G~L~I~a~~~~~~~-~~yt-Sg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 39 DPDAV--TT---INGSLRITMDQFRNHG-LNFR-SGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred cCcCe--Ee---cCCeEEEEEEeecCCC-CCEE-EEEEEECCcceeeCCEEEEEEECCC
Confidence 34655 44 7899999997652111 1111 111111 22345899999999996
No 78
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=42.12 E-value=45 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.8
Q ss_pred eEEEEEECCCCCCCCCceeEeCCCCEEEEEEecc
Q 032405 100 EFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKH 133 (141)
Q Consensus 100 ~F~R~~~LP~~vd~~~I~A~~~~dGVL~I~vPK~ 133 (141)
.|.-...||. ++.+.|+-.++ +|.|+|+--+.
T Consensus 44 ~y~v~adlPG-v~kedi~V~v~-~~~LtI~ge~~ 75 (142)
T PRK11597 44 HYRITLALAG-FRQEDLDIQLE-GTRLTVKGTPE 75 (142)
T ss_pred EEEEEEEeCC-CCHHHeEEEEE-CCEEEEEEEEc
Confidence 6778899996 89999999999 99999987654
No 79
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=38.82 E-value=1.5e+02 Score=22.87 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEEeccCCEEEEEEEEeecc--cCCceeeEEEEec--cccCCCeeEEEEEECCC
Q 032405 51 GARKDTSNLKCIIRRNGNVQIQGVMTEGD--VAKNSSKVYKMLQ--QQLCPPGEFTVSFSLPG 109 (141)
Q Consensus 51 Gv~kedi~V~ve~~~~~~L~I~G~~~~~~--~~~~~~~~er~~~--~~~~~~G~F~R~~~LP~ 109 (141)
-.+++++. + ++|.|.|++.+.... ....+.. -+..+ .....||.|+-+++||.
T Consensus 34 ~~~~~nv~--v---~~G~L~i~~~~~~~~~~~~~~~~s-g~i~S~~~~~~~yG~~E~r~k~~~ 90 (235)
T cd08023 34 TYRPENAY--V---EDGNLVITARKEPDKGGDGYPYTS-GRITTKGKFSFTYGRVEARAKLPK 90 (235)
T ss_pred eCCCCCeE--E---ECCEEEEEEEECCCCCCCcccEEE-EEEEECCCcceeCCEEEEEEEccC
Confidence 35667654 4 689999998765221 1111111 11111 23345899999999996
No 80
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=38.01 E-value=49 Score=25.46 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=24.4
Q ss_pred EEEEEEcC-CCCCCCeEEEEEeccCCEEEEEEEEe
Q 032405 43 YLFRVSLP-GARKDTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 43 y~v~~dLP-Gv~kedi~V~ve~~~~~~L~I~G~~~ 76 (141)
|.=+.-|| ||+++.|.=+ +..+|.|+|++...
T Consensus 117 F~R~y~LP~~vdp~~V~S~--LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTST--LSSDGVLTIEAPKP 149 (173)
T ss_pred EEEEecCCCCCChhheEEe--eCCCceEEEEccCC
Confidence 33345788 8999987754 46899999999876
No 81
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=37.86 E-value=1.1e+02 Score=21.36 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=29.0
Q ss_pred cceeEEEcCCeEEEEEEcCCC-----CCCCeEEEEEeccCCEEEEE
Q 032405 32 GLYDIGVSDKAYLFRVSLPGA-----RKDTSNLKCIIRRNGNVQIQ 72 (141)
Q Consensus 32 ~~vDi~Et~~~y~v~~dLPGv-----~kedi~V~ve~~~~~~L~I~ 72 (141)
|++.|+++++.|.|.+--+.- +++...|.- ++|.|-|.
T Consensus 26 P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~---~~g~~fI~ 68 (95)
T PF12992_consen 26 PDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQE---EDGNLFIE 68 (95)
T ss_pred CCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEE---eCCEEEEe
Confidence 389999999999999866653 566666664 78888764
No 82
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=37.41 E-value=1.3e+02 Score=22.53 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCCCeEEEEEeccC-CEEEEEEEEeecccCCceeeEEEEec-cccCCCeeEEEEEECCCC
Q 032405 52 ARKDTSNLKCIIRRN-GNVQIQGVMTEGDVAKNSSKVYKMLQ-QQLCPPGEFTVSFSLPGP 110 (141)
Q Consensus 52 v~kedi~V~ve~~~~-~~L~I~G~~~~~~~~~~~~~~er~~~-~~~~~~G~F~R~~~LP~~ 110 (141)
.+++++.+ ++ |.|.|++.+... ...+.. -+..+ ++.+.||.|+-++++|..
T Consensus 27 ~~~~nv~~-----~~~G~L~l~~~~~~~--~~~~~s-g~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 27 NSPNNVYV-----ENDGGLTLRTDRDQT--DGPYSS-AEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred ECccCEEE-----eCCCeEEEEEEecCC--CCceEe-EEEEeCcceEeeEEEEEEEEcCCC
Confidence 35666544 44 899999976522 111211 11122 344458999999999874
No 83
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=37.01 E-value=48 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCCCCCCeEEEEEeccCCEEEEEEEEe
Q 032405 50 PGARKDTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 50 PGv~kedi~V~ve~~~~~~L~I~G~~~ 76 (141)
.|+...+++|++ ++|.++++|...
T Consensus 38 ~~~~~~~i~V~v---~~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQV---EDGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEE---eCCEEEEEEEeC
Confidence 477788899988 899999999886
No 84
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=35.94 E-value=1.2e+02 Score=23.29 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.0
Q ss_pred CCCeEEEEEeccCCEEEEEEE
Q 032405 54 KDTSNLKCIIRRNGNVQIQGV 74 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~ 74 (141)
+++++|++ .++.|+|+|.
T Consensus 12 P~~V~v~i---~~~~v~vkGp 29 (178)
T CHL00140 12 PDNVNVSI---DDQIIKVKGP 29 (178)
T ss_pred CCCCEEEE---ECCEEEEECC
Confidence 37788888 7889999996
No 85
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=34.57 E-value=41 Score=23.76 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.9
Q ss_pred CCceeEeCCCCEEEEEEe
Q 032405 114 RLFHPQFRQDGILEGVVM 131 (141)
Q Consensus 114 ~~I~A~~~~dGVL~I~vP 131 (141)
..+.+.+. +|||+|+++
T Consensus 28 ~d~D~e~~-~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQ-GGVLTLTFG 44 (105)
T ss_pred cCEeeecc-CCEEEEEEC
Confidence 46788899 999999998
No 86
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=34.41 E-value=36 Score=24.15 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=14.2
Q ss_pred ceeEeCCCCEEEEEEec
Q 032405 116 FHPQFRQDGILEGVVMK 132 (141)
Q Consensus 116 I~A~~~~dGVL~I~vPK 132 (141)
+.+.+. +|||+|+++.
T Consensus 29 ~D~e~~-~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERN-GGVLTLTFEN 44 (105)
T ss_pred eeeecc-CCEEEEEECC
Confidence 778899 9999999885
No 87
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=33.30 E-value=36 Score=23.95 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=14.6
Q ss_pred CceeEeCCCCEEEEEEec
Q 032405 115 LFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 115 ~I~A~~~~dGVL~I~vPK 132 (141)
.+.+.+. +|||+|+++.
T Consensus 26 d~D~e~~-~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERA-GGVLTLTFEN 42 (102)
T ss_pred CeeeecC-CCEEEEEECC
Confidence 4788899 9999999974
No 88
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=31.49 E-value=42 Score=23.73 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=15.4
Q ss_pred CCceeEeCCCCEEEEEEec
Q 032405 114 RLFHPQFRQDGILEGVVMK 132 (141)
Q Consensus 114 ~~I~A~~~~dGVL~I~vPK 132 (141)
..+.+.+. +|||+|++|.
T Consensus 30 ~d~d~e~~-~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERS-GGVLTIEFPD 47 (109)
T ss_dssp STEEEEEE-TTEEEEEETT
T ss_pred CceEEEcc-CCEEEEEECC
Confidence 36889999 9999999964
No 89
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=30.00 E-value=1.9e+02 Score=22.59 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCeEEEEEeccCCEEEEEEE
Q 032405 54 KDTSNLKCIIRRNGNVQIQGV 74 (141)
Q Consensus 54 kedi~V~ve~~~~~~L~I~G~ 74 (141)
+++++|++ +++.|+|+|.
T Consensus 12 P~~V~V~i---~~~~ItVkGp 29 (189)
T PTZ00179 12 PEDVTVSV---KDRIVTVKGK 29 (189)
T ss_pred CCCCEEEE---eCCEEEEECC
Confidence 47889998 7889999996
No 90
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=29.44 E-value=1.4e+02 Score=27.26 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.0
Q ss_pred ceeEEEcC------CeEEEEEEcCCCCC-----CCeEEEEEeccCCEEEEEEEEe
Q 032405 33 LYDIGVSD------KAYLFRVSLPGARK-----DTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 33 ~vDi~Et~------~~y~v~~dLPGv~k-----edi~V~ve~~~~~~L~I~G~~~ 76 (141)
.+.|++.+ +.++=.+.|+|+.+ ..|+|+++++.+|.|+|++...
T Consensus 412 ~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~ 466 (595)
T PRK01433 412 QFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEK 466 (595)
T ss_pred EEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEc
Confidence 45677654 34566778888765 3689999999999999999764
No 91
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=28.48 E-value=1.2e+02 Score=28.11 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=31.2
Q ss_pred ceeEEEcCC------eEEEEEEcCCCCC-----CCeEEEEEeccCCEEEEEEEEe
Q 032405 33 LYDIGVSDK------AYLFRVSLPGARK-----DTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 33 ~vDi~Et~~------~y~v~~dLPGv~k-----edi~V~ve~~~~~~L~I~G~~~ 76 (141)
.+.|++.+. .++-.++|.|+.+ ..|+|+++++.+|.|.|++...
T Consensus 457 ~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~ 511 (657)
T PTZ00186 457 GIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDK 511 (657)
T ss_pred EEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEc
Confidence 456776433 3455666665543 4689999999999999999764
No 92
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.66 E-value=50 Score=23.09 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=12.7
Q ss_pred eeEeCCCCEEEEEEec
Q 032405 117 HPQFRQDGILEGVVMK 132 (141)
Q Consensus 117 ~A~~~~dGVL~I~vPK 132 (141)
.+.+. +|||+|+++.
T Consensus 30 D~e~~-~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYS-SGVLTLELPS 44 (97)
T ss_pred ccccC-CCEEEEEECC
Confidence 67788 9999999864
No 93
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.52 E-value=9.7 Score=25.22 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=10.1
Q ss_pred CceeEeCCCCEEE
Q 032405 115 LFHPQFRQDGILE 127 (141)
Q Consensus 115 ~I~A~~~~dGVL~ 127 (141)
=|.|.|+ ||||.
T Consensus 6 IIEaiYE-nGVfK 17 (67)
T COG2880 6 IIEAIYE-NGVLK 17 (67)
T ss_pred HHHHHHh-ccccc
Confidence 3789999 99985
No 94
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=24.37 E-value=71 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.8
Q ss_pred CCCCCeEEEEEeccCCEEEEEEEE
Q 032405 52 ARKDTSNLKCIIRRNGNVQIQGVM 75 (141)
Q Consensus 52 v~kedi~V~ve~~~~~~L~I~G~~ 75 (141)
++.+.|.|.. ..|.|+|.|+.
T Consensus 23 f~~~~I~l~t---~~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNT---KKGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEE---TTEEEEEEEEE
T ss_pred ECCCEEEEEe---CCEEEEEECce
Confidence 4567777777 88999999986
No 95
>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]
Probab=22.55 E-value=65 Score=28.55 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=39.8
Q ss_pred cccCCCCCCCCceEEeeccccCCC-CCCCCcceeEEEcCCeEEEEEEcCCC
Q 032405 3 VLKYADHPRMKPLVVVEGSAKEGC-GAPPLGLYDIGVSDKAYLFRVSLPGA 52 (141)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~-~~p~~~~vDi~Et~~~y~v~~dLPGv 52 (141)
+++.-|++-|+|+|-++|.-...+ +..+..|+-++.++..-+|.+||.|=
T Consensus 217 ~~~lid~~~~~PlvHVSgm~ga~r~~~s~V~PLaWHP~N~NalIv~DL~~D 267 (475)
T COG2925 217 LLALIDIPNMQPLVHVSGMFGAERGNTSWVLPLAWHPTNRNAVIVCDLAGD 267 (475)
T ss_pred HHHHhcccccCceEEeecccchhhCCceEEEeecccCCCCceEEEEEccCC
Confidence 345567889999999999877655 34455588999999999999999883
No 96
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.55 E-value=2.3e+02 Score=17.57 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=26.8
Q ss_pred eEE-EcCCeEEEEEEcCCCCCCCeEEEEEeccCCEEEEEEE
Q 032405 35 DIG-VSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGV 74 (141)
Q Consensus 35 Di~-Et~~~y~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~ 74 (141)
.+. =....|.|++..||...-.-.|.+ ..+....|+..
T Consensus 28 ~~~~l~~G~~~v~v~~~Gy~~~~~~v~v--~~~~~~~v~~~ 66 (71)
T PF08308_consen 28 TLKDLPPGEHTVTVEKPGYEPYTKTVTV--KPGETTTVNVT 66 (71)
T ss_pred eeeecCCccEEEEEEECCCeeEEEEEEE--CCCCEEEEEEE
Confidence 444 447899999999999887666666 34556666654
No 97
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=20.51 E-value=1.3e+02 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCCeEEEEEeccCCEEEEEEEE
Q 032405 44 LFRVSLPGARKDTSNLKCIIRRNGNVQIQGVM 75 (141)
Q Consensus 44 ~v~~dLPGv~kedi~V~ve~~~~~~L~I~G~~ 75 (141)
-|.+.+||+..+.+.++. .++.|+=.|..
T Consensus 17 pisIsvpgv~~~~v~~s~---~ggsl~~~g~~ 45 (181)
T PF12080_consen 17 PISISVPGVPSNKVPASA---TGGSLSKSGGG 45 (181)
T ss_pred cEEEEeCCCCccccEEEe---eCCEEEecCCC
Confidence 467788999998888887 67666554443
No 98
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=20.14 E-value=2.7e+02 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=30.7
Q ss_pred ceeEEEcCC------eEEEEEEcCCCCC-----CCeEEEEEeccCCEEEEEEEEe
Q 032405 33 LYDIGVSDK------AYLFRVSLPGARK-----DTSNLKCIIRRNGNVQIQGVMT 76 (141)
Q Consensus 33 ~vDi~Et~~------~y~v~~dLPGv~k-----edi~V~ve~~~~~~L~I~G~~~ 76 (141)
.+.|++.+. .++=.+.+.|+.+ ..|+|+++++.+|.|+|++...
T Consensus 434 ~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~ 488 (616)
T PRK05183 434 AIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEK 488 (616)
T ss_pred EEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEc
Confidence 345555443 3455667766653 3689999999999999998654
Done!