BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032406
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Query: 3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCS-GIEL 61
I S+YI+NK+G LI+ D+G+ ++ N +R+ S +HS+HAI+ LSP +G S GIE+
Sbjct: 2 TINSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEV 61
Query: 62 LEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCE 121
+E + F L CFQ+ TG KF+V+ +P Q +E LL +YELYTDYVLKNPFYE+EM IRC+
Sbjct: 62 IETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCD 121
Query: 122 LFDINLSQ 129
LFD L++
Sbjct: 122 LFDYKLNR 129
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 82/106 (77%)
Query: 27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
R+ +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161
Query: 87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 3 AIYSLYIINKSGGLIFYKD 21
AI+S+Y++NK+GGLI+ D
Sbjct: 2 AIFSVYVVNKAGGLIYQLD 20
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 82/106 (77%)
Query: 27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
R+ +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161
Query: 87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 3 AIYSLYIINKSGGLIFYKD 21
AI+S+Y++NK+GGLI+ D
Sbjct: 2 AIFSVYVVNKAGGLIYQWD 20
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 82/106 (77%)
Query: 27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
R+ +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161
Query: 87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 3 AIYSLYIINKSGGLIFYKD 21
AI+S+Y++NK+GGLI+ D
Sbjct: 2 AIFSVYVVNKAGGLIYQWD 20
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 82/106 (77%)
Query: 27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
R+ +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161
Query: 87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 3 AIYSLYIINKSGGLIFYKD 21
AI+S+Y++NK+GGLI+ D
Sbjct: 2 AIFSVYVVNKAGGLIYQLD 20
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 82/106 (77%)
Query: 27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
R+ +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161
Query: 87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 3 AIYSLYIINKSGGLIFYKD 21
AI+S+Y++NK+GGLI+ D
Sbjct: 2 AIFSVYVVNKAGGLIYQLD 20
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 4 IYSLYIINKSGGLIFYKDYGSAGR-MDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELL 62
+++L IIN++G LIF +++GS+ + N+ L +A H +HAIS Q+SP G SGI+LL
Sbjct: 1 MHALIIINRAGSLIFQREFGSSPTALTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLL 60
Query: 63 EADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCEL 122
EA TF++H Q+ TG KF + E T + L+ YELY+DYVLKNPFY +EMPI+C+L
Sbjct: 61 EAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQL 120
Query: 123 FDINLSQAV 131
FD L + +
Sbjct: 121 FDEQLKRYI 129
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 4 IYSLYIINKSGGLIFYKDYGSA--GRMDTNDSLRVASLWHSMHAISQQLSPTT--GCSGI 59
IY++YI NK G I+Y+D+ + + D + + +S+ A SP +G
Sbjct: 2 IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKTGF 61
Query: 60 ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIY-ELYTDYVLKNPFYEMEMPI 118
+ T+ LH +++L+ KF ++ +P + LK IY +++ +YV+KNP Y+ +
Sbjct: 62 HCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTTV 121
Query: 119 RCELF 123
+C+ F
Sbjct: 122 KCDTF 126
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 24/100 (24%)
Query: 57 SGIELLEADTFDLHCFQSLTGTKFFVVC-------EP-----------------GTQHME 92
SG+ L D F + +Q+LTG KF + +P Q +
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Query: 93 SLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
+ L+ +Y LY+DYV+K+P Y MEMPIR LFD + + V+
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 3 AIYSLYIINKSGGLIFYKDY-GSAGRMDTNDSLRVASLWHSMHAISQQLSP 52
AI ++ +INKSGGLI+ +++ ++++N+ L +AS H + AI+ QL+P
Sbjct: 2 AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTP 52
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
+++LY+ +++G + Y ++ AG + + + S+ + ++SP G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61
Query: 60 ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
+ + LH +++ TG K + + G + +L IY LY ++V+KNP + +
Sbjct: 62 LSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTV 121
Query: 119 RCELFDINLSQAVQ 132
+ ELF L V+
Sbjct: 122 QSELFRSRLDSYVR 135
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
+++LY+ +++G + Y ++ AG + + + S+ + ++SP G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61
Query: 60 ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
+ + LH +++ TG K + + G + +L IY LY ++V+KNP + +
Sbjct: 62 LSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTV 121
Query: 119 RCELFDINLSQAVQ 132
+ ELF L V+
Sbjct: 122 QSELFRSRLDSYVR 135
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 3 AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
+++LY+ +++G + Y ++ AG + + + S+ + ++SP G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61
Query: 60 ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
+ + LH +++ TG K + + G + +L IY LY + V+KNP + +
Sbjct: 62 LAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTV 121
Query: 119 RCELFDINLSQAVQ 132
+ ELF L V+
Sbjct: 122 QSELFRSRLDSYVR 135
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 3 AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
+++LY+ +++G + Y ++ AG + + + S+ + ++SP G
Sbjct: 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61
Query: 60 ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
+ + LH +++ TG K + + G + +L IY LY + V+KNP + +
Sbjct: 62 LAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTV 121
Query: 119 RCELFDINLSQAVQ 132
+ ELF L V+
Sbjct: 122 QSELFRSRLDSYVR 135
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 67 FDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMP------IR 119
+ LH +++ T + + P + +L+ IY LY ++V+K+P Y P I
Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137
Query: 120 CELFDINLSQAVQ 132
CE+F I L + V+
Sbjct: 138 CEIFRITLDRFVR 150
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 89 QHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQK 133
+M S + ++ELY L NPFY++ PIR FD + +K
Sbjct: 128 NNMRSFYQEVHELYVK-TLMNPFYKITDPIRSPAFDSRVRTLARK 171
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 22/152 (14%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTT-GCSGI 59
M Y I+ ++ K++ +MD+ND + +HA + + G +G+
Sbjct: 1 MLGNYYFAIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQF--IVHAALDLVDESMWGTTGM 58
Query: 60 ELLEADTF----------------DLHCFQSLTGTKFFVVCE--PGTQHMESLLKVIYEL 101
L D F D F LT F++ +++ +YE
Sbjct: 59 YLKSVDKFNEWFVSAFDPPLSWIIDPQFFLDLTSWMRFMMLHDVKNDDGIKNFFSDVYET 118
Query: 102 YTDYVLKNPFYEMEMPIRCELFDINLSQAVQK 133
+ VL NPFYE+ I+ FD + A +K
Sbjct: 119 FIK-VLMNPFYEINSKIKSANFDKKVLLAAKK 149
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
M+ + I+ +F ++ AG+ ++ D R + + + A+ + +
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 61 LLEADTFD---LHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
L D F+ + F + +F ++ + + +++ +Y+LY + + NPFYE
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNS 119
Query: 117 PIRCELFD 124
PIR FD
Sbjct: 120 PIRSSAFD 127
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 91 MESLLKVIYELYTDYVLKNPFYEMEMPIRCELFD 124
+++ +Y+LY + + NPFYE+ PIR F+
Sbjct: 95 IKNFFNDVYDLYVKFAM-NPFYEVNAPIRSTAFE 127
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 MESLLKVIYELYTDYVLKNPFYEMEMPIRCELFD 124
+++ +Y+LY + + NPFYE PIR FD
Sbjct: 95 IKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFD 127
>sp|P22956|RDRP_RCNMV RNA-directed RNA polymerase OS=Red clover necrotic mosaic virus
GN=ORF1 PE=3 SV=2
Length = 767
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 62 LEADTFDLHCFQSLTGTKF----FVVCEPGTQHMESLLK 96
L+A FD HC S+ KF + C PG Q +E+LLK
Sbjct: 468 LDASRFDQHC--SVDALKFEQTFYKACFPGDQQLETLLK 504
>sp|Q6NRC7|TBC23_XENLA TBC1 domain family member 23 OS=Xenopus laevis GN=tbc1d23 PE=2 SV=1
Length = 682
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 60 ELLEADTFDLHCFQSLTGTKFFVV-CEPGTQHMESLLKVIYELYTDYVLKNP 110
E+L+A+ Q G +FFVV C P Q+ L + L +D +L+NP
Sbjct: 308 EILQANQ------QQGDGVRFFVVDCRPAEQYNSGHLSTAFHLDSDLMLQNP 353
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 91 MESLLKVIYELYTDYVLKNPFYEMEMPIRCELFD 124
+++ +Y+LY + + NPFYE+ PIR F+
Sbjct: 95 IKNFFNDVYDLYIKFAM-NPFYELNSPIRSSAFE 127
>sp|Q5F415|TBC23_CHICK TBC1 domain family member 23 OS=Gallus gallus GN=TBC1D23 PE=2 SV=1
Length = 679
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 60 ELLEADTFDLHCFQSLTGTKFFVV-CEPGTQHMESLLKVIYELYTDYVLKNP 110
E+L+A+ Q G +FFVV C P Q+ L + L +D +L+NP
Sbjct: 317 EILQANQ------QQGEGVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNP 362
>sp|P45443|DYHC_NEUCR Dynein heavy chain, cytoplasmic OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ro-1 PE=3 SV=1
Length = 4367
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 46 ISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDY 105
I +Q+ P S + + D +DL+ + K ++ G +E LK + E +T+Y
Sbjct: 1458 IYKQIKPGKRYSPVSMTLGDVWDLNLVATEVIVKDIIIQAQGEMALEEFLKQVRETWTNY 1517
Query: 106 VLK 108
L+
Sbjct: 1518 GLE 1520
>sp|Q5R8I6|TBC23_PONAB TBC1 domain family member 23 OS=Pongo abelii GN=TBC1D23 PE=2 SV=1
Length = 684
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 77 GTKFFVV-CEPGTQHMESLLKVIYELYTDYVLKNP 110
G +FFVV C P Q+ L + L +D +L+NP
Sbjct: 335 GVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNP 369
>sp|Q9NUY8|TBC23_HUMAN TBC1 domain family member 23 OS=Homo sapiens GN=TBC1D23 PE=1 SV=3
Length = 699
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 77 GTKFFVV-CEPGTQHMESLLKVIYELYTDYVLKNP 110
G +FFVV C P Q+ L + L +D +L+NP
Sbjct: 335 GVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNP 369
>sp|Q8K0F1|TBC23_MOUSE TBC1 domain family member 23 OS=Mus musculus GN=Tbc1d23 PE=2 SV=1
Length = 684
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 77 GTKFFVV-CEPGTQHMESLLKVIYELYTDYVLKNP 110
G +FFVV C P Q+ L + L +D +L+NP
Sbjct: 335 GVRFFVVDCRPAEQYNAGHLATAFHLDSDLMLQNP 369
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 MESLLKVIYELYTDYVLKNPFYEMEMPIRCELFD 124
+++ Y+LY + + NPFYE+ P+R FD
Sbjct: 95 IKNFFNEAYDLYIKFAM-NPFYEINSPLRSTAFD 127
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 MESLLKVIYELYTDYVLKNPFYEMEMPIRCELFD 124
+++ +Y+LY + + NPFYE PIR F+
Sbjct: 95 IKNFFTDVYDLYIKFAM-NPFYEPNSPIRSTAFE 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,689,824
Number of Sequences: 539616
Number of extensions: 1811404
Number of successful extensions: 3087
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3061
Number of HSP's gapped (non-prelim): 44
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)