Query 032406
Match_columns 141
No_of_seqs 109 out of 565
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 22:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 100.0 6.5E-48 2.2E-52 282.2 15.5 134 2-135 1-138 (145)
2 3cue_A Transport protein parti 100.0 5.6E-45 1.9E-49 280.5 18.2 134 2-135 1-219 (219)
3 3cue_C Transport protein parti 100.0 7.3E-45 2.5E-49 269.7 12.6 134 2-135 1-157 (159)
4 2j3t_D Trafficking protein par 100.0 5.4E-41 1.9E-45 259.0 17.4 105 32-136 107-211 (219)
5 2j3w_A Sedlin, trafficking pro 100.0 5.6E-40 1.9E-44 239.2 16.9 134 1-135 3-140 (142)
6 3pr6_A Trapp-associated protei 99.9 9.7E-23 3.3E-27 150.5 13.4 110 6-117 12-135 (162)
7 3kyq_A YKT6, synaptobrevin hom 97.8 0.00059 2E-08 51.5 13.4 128 1-137 1-134 (199)
8 3bw6_A Synaptobrevin homolog Y 97.3 0.012 4E-07 41.9 13.7 129 1-137 4-139 (144)
9 2nut_C Vesicle-trafficking pro 97.0 0.048 1.6E-06 40.4 14.3 92 42-137 37-130 (196)
10 2vgl_S AP-2 complex subunit si 96.1 0.19 6.5E-06 35.2 12.3 92 3-106 1-95 (142)
11 1w63_Q Adapter-related protein 96.0 0.19 6.5E-06 36.0 12.1 91 3-106 1-95 (158)
12 4b93_A Vesicle-associated memb 93.6 0.89 3.1E-05 33.4 10.1 87 45-137 32-121 (189)
13 2vgl_M AP-2 complex subunit MU 93.3 1.5 5.1E-05 36.1 12.1 91 3-106 1-93 (435)
14 2vx8_A Nucleoporin-like protei 93.1 0.86 3E-05 33.1 9.3 58 43-104 72-131 (169)
15 1w63_M Adaptor-related protein 92.4 0.34 1.2E-05 39.8 6.9 93 2-106 1-95 (423)
16 3tjz_C Coatomer subunit zeta-1 90.4 3.6 0.00012 29.2 11.5 91 3-105 12-104 (153)
17 4afi_A AP-3 complex subunit de 80.7 14 0.00047 26.7 13.3 88 43-136 82-172 (173)
18 2wx3_A MRNA-decapping enzyme 1 65.6 4.1 0.00014 23.9 2.2 15 92-106 28-42 (51)
19 2x5c_A Hypothetical protein OR 63.4 19 0.00067 23.9 5.5 36 65-100 60-102 (131)
20 2wx4_A DCP1, decapping protein 51.0 5.8 0.0002 22.7 1.1 14 93-106 27-40 (46)
21 3cpt_A Mitogen-activated prote 40.9 92 0.0031 21.9 9.0 22 3-24 37-58 (143)
22 3bua_E HSNM1B, DNA cross-LINK 36.2 7.5 0.00025 20.8 -0.0 30 101-131 6-35 (36)
23 3t12_B Gliding protein MGLB; G 35.9 1E+02 0.0036 21.1 13.2 82 4-89 26-111 (136)
24 2ope_A PILX; type IV pilin, mi 29.5 1E+02 0.0035 21.2 4.9 36 95-136 16-51 (128)
25 2jtt_C Calcyclin-binding prote 22.6 40 0.0014 18.0 1.4 13 88-100 5-17 (35)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=6.5e-48 Score=282.22 Aligned_cols=134 Identities=21% Similarity=0.444 Sum_probs=124.3
Q ss_pred ccEEEEEEEeCCCceEEEeecCCCC--CCC-ChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCc
Q 032406 2 AAIYSLYIINKSGGLIFYKDYGSAG--RMD-TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGT 78 (141)
Q Consensus 2 ~~i~~~~Ii~r~g~~iy~~~~~~~~--~~~-~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tgi 78 (141)
|+||||+||||+|+|||+++|.+.+ +.+ +|+.+.++|++|||++|+++++|.++..|+++++|++|++|||+|+||+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 5799999999999999999998653 444 4556668999999999999999987788999999999999999999999
Q ss_pred EEEEEecCCchhHHHHHHHHH-HHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406 79 KFFVVCEPGTQHMESLLKVIY-ELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR 135 (141)
Q Consensus 79 Kfvlitd~~~~~~~~~l~~iy-~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~ 135 (141)
||||+||+++++++++|++|| ++|||||+|||||++|+||+|++|+.+|+++++++.
T Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 81 KVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 999999999999999999999 899999999999999999999999999999999874
No 2
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-45 Score=280.47 Aligned_cols=134 Identities=39% Similarity=0.699 Sum_probs=124.8
Q ss_pred ccEEEEEEEeCCCceEEEeecCCC-CCCCChhHHHHHHHHHHHHHHHHhhCCCC--------------------------
Q 032406 2 AAIYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPTT-------------------------- 54 (141)
Q Consensus 2 ~~i~~~~Ii~r~g~~iy~~~~~~~-~~~~~~~~~~l~~~l~sL~~i~~klsp~~-------------------------- 54 (141)
|+||+||||||+|+|||+++|.+. .++++||.+.|+|++||+++|+.+++|..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS 80 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence 579999999999999999999876 57888999999999999999999999864
Q ss_pred ----------------------------------CCCCceEeecCcEEEEEEEcCCCcEEEEEecCCc------------
Q 032406 55 ----------------------------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT------------ 88 (141)
Q Consensus 55 ----------------------------------~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~------------ 88 (141)
+..||+++.|++|++|||+|+||+||||+||+..
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~ 160 (219)
T 3cue_A 81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDK 160 (219)
T ss_dssp -----------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC------------
T ss_pred ccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 2348999999999999999999999999999987
Q ss_pred ------------hhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406 89 ------------QHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR 135 (141)
Q Consensus 89 ------------~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~ 135 (141)
+++|++|++||++|||||||||||.+|+||+|+.|+.+|++++++++
T Consensus 161 ~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~ 219 (219)
T 3cue_A 161 PDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219 (219)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999874
No 3
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-45 Score=269.69 Aligned_cols=134 Identities=24% Similarity=0.386 Sum_probs=120.8
Q ss_pred ccEEEEEEEeCCCceEEEeecCCC-----C----CCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEE
Q 032406 2 AAIYSLYIINKSGGLIFYKDYGSA-----G----RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCF 72 (141)
Q Consensus 2 ~~i~~~~Ii~r~g~~iy~~~~~~~-----~----~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y 72 (141)
|+|||||||||+|+|||+++|.+. + +.++|+.++++|++|||++|+++++|.....||.++.|++|++|+|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 679999999999999999999752 1 2234556779999999999999999987678999999999999999
Q ss_pred EcCCCcEEEEEecCCchhHHHHHHHHHH-HHHHhhhhCC-----CCCCC--------CcccchhHHHHHHHHHHhhh
Q 032406 73 QSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNP-----FYEME--------MPIRCELFDINLSQAVQKDR 135 (141)
Q Consensus 73 ~T~TgiKfvlitd~~~~~~~~~l~~iy~-~Yv~~v~~NP-----fy~~~--------~pI~s~~F~~~v~~~~~~~~ 135 (141)
+|+||+||||+||+++++++++|++||+ +|||||+||| ||.++ +||+|++|+.+|+++++++.
T Consensus 81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~ 157 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV 157 (159)
T ss_dssp CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999996 9999999999 99999 99999999999999998864
No 4
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=5.4e-41 Score=258.98 Aligned_cols=105 Identities=56% Similarity=1.016 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCchhHHHHHHHHHHHHHHhhhhCCC
Q 032406 32 DSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPF 111 (141)
Q Consensus 32 ~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~~~~~~l~~iy~~Yv~~v~~NPf 111 (141)
+.+.++|++|||++|+++++|.+++.|++++.|++|++|||+|+||+||||+||++++++|++|++||++|+|+|+||||
T Consensus 107 ~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPF 186 (219)
T 2j3t_D 107 EKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPF 186 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCC
Confidence 45668999999999999999987778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchhHHHHHHHHHHhhhh
Q 032406 112 YEMEMPIRCELFDINLSQAVQKDRV 136 (141)
Q Consensus 112 y~~~~pI~s~~F~~~v~~~~~~~~~ 136 (141)
|++|+||+|++|+++|+++++++..
T Consensus 187 Y~~~~pI~s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 187 YSLEMPIRCELFDQNLKLALEVAEK 211 (219)
T ss_dssp CCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCccchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999854
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=5.6e-40 Score=239.20 Aligned_cols=134 Identities=17% Similarity=0.358 Sum_probs=115.7
Q ss_pred CccEEEEEEEeCCCceEEEeecCCCCCCCChhHHH-HH-HHHHHHHHHHHhhCCCCCCCCc-eEeecCcEEEEEEEcCCC
Q 032406 1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR-VA-SLWHSMHAISQQLSPTTGCSGI-ELLEADTFDLHCFQSLTG 77 (141)
Q Consensus 1 m~~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~-l~-~~l~sL~~i~~klsp~~~~~g~-~~~~t~~ykv~~y~T~Tg 77 (141)
|+.||+|+||||+|+|||+++|.+.++.+.+++.. ++ +++||+.++.++++|.++...+ .+..+++|++|||+|+||
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 55699999999999999999998765544455443 55 8899999999999876432222 445789999999999999
Q ss_pred cEEEEEecCC-chhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406 78 TKFFVVCEPG-TQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR 135 (141)
Q Consensus 78 iKfvlitd~~-~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~ 135 (141)
+|||++||++ +++++++|++||++|+++|+ ||||++|+||+|+.|+++|+++++++.
T Consensus 83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 9999999995 88999999999999999998 999999999999999999999999874
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.7e-23 Score=150.54 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=84.8
Q ss_pred EEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHH-HHHHHHHhhC-CCCCC--CCce-EeecCcEEEEEEE-cCCCcE
Q 032406 6 SLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH-SMHAISQQLS-PTTGC--SGIE-LLEADTFDLHCFQ-SLTGTK 79 (141)
Q Consensus 6 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~-sL~~i~~kls-p~~~~--~g~~-~~~t~~ykv~~y~-T~TgiK 79 (141)
.+.||||++.|||.+.+.... .+.+++++...++| |||.++++.+ +.... .++. .+.++++++|||+ |+||+|
T Consensus 12 FVaIIg~~n~PLyI~~~~~~~-~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK 90 (162)
T 3pr6_A 12 FVSLIDESDKPILIYVPNEAE-NEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK 90 (162)
T ss_dssp EEEEECTTSCEEEEECCC--------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred EEEEECCCCceeEEEeCCCcc-ccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence 455999999999999986532 23355678888888 8999999984 22211 2333 5679999999998 999999
Q ss_pred EEEEecCC------c--hhHHHHHHHHHHHHHHhhhhCCCCCCCCc
Q 032406 80 FFVVCEPG------T--QHMESLLKVIYELYTDYVLKNPFYEMEMP 117 (141)
Q Consensus 80 fvlitd~~------~--~~~~~~l~~iy~~Yv~~v~~NPfy~~~~p 117 (141)
||+++|.+ + .++|++|+++|++|++.+ +||||.+++.
T Consensus 91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l-~NPFy~~~d~ 135 (162)
T 3pr6_A 91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVK-CNPLLVSGDE 135 (162)
T ss_dssp EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHH-TCTTGGGSCH
T ss_pred EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHh-cCCCCCCCch
Confidence 99999863 3 699999999999999966 5999999843
No 7
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=97.84 E-value=0.00059 Score=51.47 Aligned_cols=128 Identities=11% Similarity=0.142 Sum_probs=79.5
Q ss_pred CccEEEEEEEeCCCce-EE-EeecCCCCCCCChhHHHH-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCC
Q 032406 1 MAAIYSLYIINKSGGL-IF-YKDYGSAGRMDTNDSLRV-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTG 77 (141)
Q Consensus 1 m~~i~~~~Ii~r~g~~-iy-~~~~~~~~~~~~~~~~~l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tg 77 (141)
||.||++.|+.+++.+ +. ...+.-+ ..+-=+.... -.+-+..+.+++++.|. .-.++..+.|.+|+|....|
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dls-sf~~f~r~sv~ef~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~g 75 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVS-SFSFFQRSSVQEFMTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSDS 75 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCT-TSCTTTHHHHHHHHHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTTS
T ss_pred CceEEEEEEEEcCCCCceEEeeecccc-cccceehHhHHHHHHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecCC
Confidence 8999999999887653 32 2223211 1111111111 23446778888887663 23467889999999999999
Q ss_pred cEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCC-CCCCCcccchhHHHHHHHHHHhhhhh
Q 032406 78 TKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPF-YEMEMPIRCELFDINLSQAVQKDRVA 137 (141)
Q Consensus 78 iKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPf-y~~~~pI~s~~F~~~v~~~~~~~~~~ 137 (141)
+-+++++|..-+ -.-.+|++|.+.|....-.+-. .....|. .| ..+++++++|++|
T Consensus 76 l~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~---~f-~~l~~~m~~Y~dp 134 (199)
T 3kyq_A 76 LAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI---HY-TALDGHLSRYQNP 134 (199)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC---CC-CTHHHHHHHTTSG
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc---cc-HHHHHHHHHhCCc
Confidence 999999999855 3446889998777663321111 0111223 34 4567777778764
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=97.33 E-value=0.012 Score=41.94 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=74.3
Q ss_pred CccEEEEEEEeCCC-ceEEEeecCCCCCCCChhHHHH-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCc
Q 032406 1 MAAIYSLYIINKSG-GLIFYKDYGSAGRMDTNDSLRV-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGT 78 (141)
Q Consensus 1 m~~i~~~~Ii~r~g-~~iy~~~~~~~~~~~~~~~~~l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tgi 78 (141)
||.|+++.|+..++ .++.......-+..+--+.... -.+-+-.+.+++++.+. .-.++..++|.+|++....|+
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~gl 79 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG----QRQSIEEGNYIGHVYARSEGI 79 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT----EEEEEEETTEEEEEEECTTSE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecCCE
Confidence 35799998876543 2333332221111111011001 11234567778888652 235778899999999888999
Q ss_pred EEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCccc---chhHHHHHHHHHHhhhhh
Q 032406 79 KFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIR---CELFDINLSQAVQKDRVA 137 (141)
Q Consensus 79 Kfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~---s~~F~~~v~~~~~~~~~~ 137 (141)
=+++++|..-+ -.=.+|++|.+-|.... |-.......+ +-.| ..+++.+++|++|
T Consensus 80 ~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y---~~~~~~~~~~~~~~~~f-~~l~~~i~kYqdp 139 (144)
T 3bw6_A 80 CGVLITDKEYPVRPAYTLLNKILDEYLVAH---PKEEWADVTETNDALKM-KQLDTYISKYQDP 139 (144)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHS---CGGGTTTCSSCCGGGCC-THHHHHHHHTSCC
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHc---cchhhhhcccccCCcch-HHHHHHHHHhCch
Confidence 99999998755 33468888887777632 2110111011 2344 5777777778765
No 9
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.95 E-value=0.048 Score=40.40 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=65.1
Q ss_pred HHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCccc
Q 032406 42 SMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIR 119 (141)
Q Consensus 42 sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~ 119 (141)
-...+.+++.+.. .+-.++..++|.+| |....|+-+++++|..-+ -.-.+|++|.+.|....- +-.-....|..
T Consensus 37 ~a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~-~~~~~~~~~~~ 112 (196)
T 2nut_C 37 QAKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG-KKVPTVSRPYS 112 (196)
T ss_dssp HHHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT-TTTTTCCSTTT
T ss_pred HHHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc-chhccccCCCc
Confidence 4566777786632 23346788999999 888999999999998855 444789999877776331 21111123555
Q ss_pred chhHHHHHHHHHHhhhhh
Q 032406 120 CELFDINLSQAVQKDRVA 137 (141)
Q Consensus 120 s~~F~~~v~~~~~~~~~~ 137 (141)
-..|+..+.+.++.|+.|
T Consensus 113 ~~~f~~~l~~~~~~y~~~ 130 (196)
T 2nut_C 113 FIEFDTFIQKTKKLYIDS 130 (196)
T ss_dssp TGGGHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHhcCc
Confidence 569999999999999764
No 10
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.13 E-value=0.19 Score=35.20 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=56.5
Q ss_pred cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCC-CCCCceEeecCcEEEEEEEcCCCcEEE
Q 032406 3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTT-GCSGIELLEADTFDLHCFQSLTGTKFF 81 (141)
Q Consensus 3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~-~~~g~~~~~t~~ykv~~y~T~TgiKfv 81 (141)
||-+++|+|++|+++..+.|... +.+....+..-++ .++...+ ....+ +..+++++ .|..-.++-|+
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~---~~~~~~~~~~~f~------~~v~~~~~~~~~~--~~~~~~~~-vy~~~~~Lyfv 68 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQF---DDDEKQKLIEEVH------AVVTVRDAKHTNF--VEFRNFKI-IYRRYAGLYFC 68 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCC---CHHHHHHHHHHHH------HHHHTCCTTSCSE--EEETTEEE-EEEEETTEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCC---ChhhhHHHHHHHH------HHHhcCCCCCCCE--EEECCEEE-EEEEECCEEEE
Confidence 57899999999999999999641 1122232333333 2222111 12233 34566654 56777899999
Q ss_pred EEecCCch--hHHHHHHHHHHHHHHhh
Q 032406 82 VVCEPGTQ--HMESLLKVIYELYTDYV 106 (141)
Q Consensus 82 litd~~~~--~~~~~l~~iy~~Yv~~v 106 (141)
++++.+.. .+-++++.+.++.-+|.
T Consensus 69 ~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 69 ICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998755 33366777666666653
No 11
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.04 E-value=0.19 Score=36.00 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=55.4
Q ss_pred cEEEEEEEeCCCceEEEeecCCCCCCCChh-HHHHHHHHHHHHHHHHhhCCCC-CCCCceEeecCcEEEEEEEcCCCcEE
Q 032406 3 AIYSLYIINKSGGLIFYKDYGSAGRMDTND-SLRVASLWHSMHAISQQLSPTT-GCSGIELLEADTFDLHCFQSLTGTKF 80 (141)
Q Consensus 3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~-~~~l~~~l~sL~~i~~klsp~~-~~~g~~~~~t~~ykv~~y~T~TgiKf 80 (141)
||-+++|+|++|.++..+.|... ... ...+..-++ +++...+ ....+ +..+++++ .|..-.++-|
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~----~~~~~~~~~~~~~------~~i~~~~~~~~~~--i~~~~~~~-vy~~~~~Lyf 67 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT----SDKERKKMVRELM------QVVLARKPKMCSF--LEWRDLKV-VYKRYASLYF 67 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC----CHHHHHHHHHHHH------HHHHTSCSSSCSE--EEETTEEE-EEEEETTEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCC----CHHHHHHHHHHHH------HHHhccCCCCCCe--EEECCEEE-EEEEECCEEE
Confidence 57899999999999999999652 222 222332222 2222211 12233 34566665 5566779999
Q ss_pred EEEecCCch--hHHHHHHHHHHHHHHhh
Q 032406 81 FVVCEPGTQ--HMESLLKVIYELYTDYV 106 (141)
Q Consensus 81 vlitd~~~~--~~~~~l~~iy~~Yv~~v 106 (141)
+++++.+.. .+-++++.+.++.-+|.
T Consensus 68 v~~~~~~~Nel~~le~L~~~vevl~~yf 95 (158)
T 1w63_Q 68 CCAIEGQDNELITLELIHRYVELLDKYF 95 (158)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998754 33356666666555543
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.55 E-value=0.89 Score=33.37 Aligned_cols=87 Identities=8% Similarity=0.131 Sum_probs=58.5
Q ss_pred HHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCc-ccch
Q 032406 45 AISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMP-IRCE 121 (141)
Q Consensus 45 ~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~p-I~s~ 121 (141)
.+.+++.|. .+-.++..++|.+| |..-.|+-+++++|..-+ -.-.+|.+|.+.|....- +.- ....| -.+.
T Consensus 32 ~iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~-~~~-~~~~~~~~~~ 105 (189)
T 4b93_A 32 QILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG-SRA-QTALPYAMNS 105 (189)
T ss_dssp HHHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG-GGG-GTCCTTTTHH
T ss_pred HHHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhcc-ccc-cccCCccccc
Confidence 345566443 23457888999999 778899999999998754 344688888866655321 111 11122 2346
Q ss_pred hHHHHHHHHHHhhhhh
Q 032406 122 LFDINLSQAVQKDRVA 137 (141)
Q Consensus 122 ~F~~~v~~~~~~~~~~ 137 (141)
.|...+++.++.|+.+
T Consensus 106 ~f~~~l~~~~~~y~d~ 121 (189)
T 4b93_A 106 EFSSVLAAQLKHHSEN 121 (189)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHhhhcc
Confidence 7999999999998763
No 13
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=93.32 E-value=1.5 Score=36.05 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=55.8
Q ss_pred cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEE
Q 032406 3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFV 82 (141)
Q Consensus 3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvl 82 (141)
||.+++|+|++|.++..+.|... .... .++.|...+........-..+.+++++ ..|....++-|++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~----~~~~--------~~~~f~~~v~~~~~~~~~~ii~~~~~~-~vy~~~~~Lyfv~ 67 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDD----IGRN--------AVDAFRVNVIHARQQVRSPVTNIARTS-FFHVKRSNIWLAA 67 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSS----CCHH--------HHHHHHHHTTTCSSCCCCSEEEETTEE-EEEEEETTEEEEE
T ss_pred CeEEEEEECCCCCEEEEEecCCC----CChh--------HHHHHHHHHhccccCCCCCEEEECCEE-EEEEEECCEEEEE
Confidence 57799999999999999999642 1111 123444445432111111234456665 4557777899999
Q ss_pred EecCCchh--HHHHHHHHHHHHHHhh
Q 032406 83 VCEPGTQH--MESLLKVIYELYTDYV 106 (141)
Q Consensus 83 itd~~~~~--~~~~l~~iy~~Yv~~v 106 (141)
+++.+... +-++|+.+.++.-+|.
T Consensus 68 ~~~~~~n~l~~le~L~~~v~vl~~yf 93 (435)
T 2vgl_M 68 VTKQNVNAAMVFEFLYKMCDVMAAYF 93 (435)
T ss_dssp EESSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99987543 3356666666555543
No 14
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=93.10 E-value=0.86 Score=33.09 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHH
Q 032406 43 MHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTD 104 (141)
Q Consensus 43 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~ 104 (141)
.+.+.+++.+. .+-.++..++|.+|++. -.|+-|++++|..-+ -.-.+|++|.+.|.+
T Consensus 72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~ 131 (169)
T 2vx8_A 72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQT 131 (169)
T ss_dssp HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHH
Confidence 46667777662 23456778999999998 469999999998754 455788888877776
No 15
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.36 E-value=0.34 Score=39.80 Aligned_cols=93 Identities=11% Similarity=0.233 Sum_probs=53.3
Q ss_pred ccEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEE
Q 032406 2 AAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFF 81 (141)
Q Consensus 2 ~~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfv 81 (141)
|||.+++|+|++|.++..+.|......+.-+ .++.+ +..+-.+. ....+ +.+++++ ..|....++-|+
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~------~f~~~--v~~~~~~~-~~~~~--i~~~~~~-~vy~~~~~Lyfv 68 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVE------HFMPI--LMEKEEEG-MLSPI--LAHGGVR-FMWIKHNNLYLV 68 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHH------HHHHH--HHHHHHTS-CCCSE--EEETTEE-EEEEEETTEEEE
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHH------HHHHH--HhhccccC-CCCCE--EEECCEE-EEEEEECCEEEE
Confidence 4789999999999999999997531111111 11111 00110101 11222 3455665 445677889999
Q ss_pred EEecCCch--hHHHHHHHHHHHHHHhh
Q 032406 82 VVCEPGTQ--HMESLLKVIYELYTDYV 106 (141)
Q Consensus 82 litd~~~~--~~~~~l~~iy~~Yv~~v 106 (141)
++++.+.. .+-++|+.+.++.-+|.
T Consensus 69 ~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 69 ATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp EEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998754 33356666666666644
No 16
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=90.36 E-value=3.6 Score=29.18 Aligned_cols=91 Identities=13% Similarity=0.246 Sum_probs=56.1
Q ss_pred cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEE
Q 032406 3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFV 82 (141)
Q Consensus 3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvl 82 (141)
||..++|+|++|+++..+-|... -.+.+++..+-.-++.+ ++.. .+.+ +..+++++ .|.--.++-|++
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~-~~~~~~~~~~e~~i~~~------~~r~--~~~i--~~~~~~~~-vy~~~~~Lyfv~ 79 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDT-YPSVKEQKAFEKNIFNK------THRT--DSEI--ALLEGLTV-VYKSSIDLYFYV 79 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSS-SCSHHHHHHHHHHHHHH------HSSC--CCCE--EEETTEEE-EEEECSSCEEEE
T ss_pred HheEEEEECCCCCEEEEEeCCCC-CCCHHHHHHHHHHHHHH------HhCC--CCCE--EEECCEEE-EEEEECCEEEEE
Confidence 78999999999999999988631 01112222222223332 2211 1223 33466665 667777899999
Q ss_pred EecCCch--hHHHHHHHHHHHHHHh
Q 032406 83 VCEPGTQ--HMESLLKVIYELYTDY 105 (141)
Q Consensus 83 itd~~~~--~~~~~l~~iy~~Yv~~ 105 (141)
+++.+.. -+-++++.+.++.-+|
T Consensus 80 ~~~~~eNel~ile~L~~~ve~l~~y 104 (153)
T 3tjz_C 80 IGSSYENELMLMTVLNCLFDSLSQM 104 (153)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHHHHHHH
Confidence 9998754 4446777777666664
No 17
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=80.73 E-value=14 Score=26.73 Aligned_cols=88 Identities=8% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCcc-c
Q 032406 43 MHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPI-R 119 (141)
Q Consensus 43 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI-~ 119 (141)
.+.+.+++.+. .+-.++..++|.+|+.. -.|+-+++++|...+ -.-.||++|.+.|...- .+- +....|- -
T Consensus 82 a~~iL~kip~~---~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~y-g~~-~~ta~pya~ 155 (173)
T 4afi_A 82 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSR-AQTALPYAM 155 (173)
T ss_dssp HHHHHTTSCSS---SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGG-GGTCCTTTT
T ss_pred HHHHHHhCCCC---CCeEEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHh-chh-hhhccCcch
Confidence 34455666553 23346778999999887 589999999998854 34467888886665522 111 1111221 1
Q ss_pred chhHHHHHHHHHHhhhh
Q 032406 120 CELFDINLSQAVQKDRV 136 (141)
Q Consensus 120 s~~F~~~v~~~~~~~~~ 136 (141)
+..|...|++.++.|.+
T Consensus 156 ~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 156 NSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45799999999888764
No 18
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=65.57 E-value=4.1 Score=23.90 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhh
Q 032406 92 ESLLKVIYELYTDYV 106 (141)
Q Consensus 92 ~~~l~~iy~~Yv~~v 106 (141)
.+|+..||++|++-+
T Consensus 28 ~~Fl~~IHeAYl~sl 42 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVL 42 (51)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999999944
No 19
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=63.35 E-value=19 Score=23.88 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=29.1
Q ss_pred CcEEEEEEEcCCCcEEEEEecCC-------chhHHHHHHHHHH
Q 032406 65 DTFDLHCFQSLTGTKFFVVCEPG-------TQHMESLLKVIYE 100 (141)
Q Consensus 65 ~~ykv~~y~T~TgiKfvlitd~~-------~~~~~~~l~~iy~ 100 (141)
..-+++.-+|-.|+|.+++-.|+ ..++..+|+++.+
T Consensus 60 aegsvsivetkngykylvirhpdggthtvpktdisailkelce 102 (131)
T 2x5c_A 60 AEGSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCE 102 (131)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHH
T ss_pred CccceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHH
Confidence 45678999999999999998775 2478888888874
No 20
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=50.95 E-value=5.8 Score=22.74 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhh
Q 032406 93 SLLKVIYELYTDYV 106 (141)
Q Consensus 93 ~~l~~iy~~Yv~~v 106 (141)
+|+.+||++|++-+
T Consensus 27 ~Fl~~iHeAYl~sl 40 (46)
T 2wx4_A 27 EFANKLHKAYLNGC 40 (46)
T ss_dssp THHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 69999999999844
No 21
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=40.94 E-value=92 Score=21.88 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=18.5
Q ss_pred cEEEEEEEeCCCceEEEeecCC
Q 032406 3 AIYSLYIINKSGGLIFYKDYGS 24 (141)
Q Consensus 3 ~i~~~~Ii~r~g~~iy~~~~~~ 24 (141)
.+++++|-+|+|.||..-.-.+
T Consensus 37 Gl~aI~ItDrDGVpi~kv~~~~ 58 (143)
T 3cpt_A 37 GLHAIVVSDRDGVPVIKVANDN 58 (143)
T ss_dssp TEEEEEEECTTSCEEEEEECTT
T ss_pred CeEEEEEECCCCcEEEEecCCC
Confidence 4899999999999999876543
No 22
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=36.21 E-value=7.5 Score=20.80 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHhhhhCCCCCCCCcccchhHHHHHHHHH
Q 032406 101 LYTDYVLKNPFYEMEMPIRCELFDINLSQAV 131 (141)
Q Consensus 101 ~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~ 131 (141)
+=.+|++ -|..-......+..||.+|++..
T Consensus 6 LALKYLL-TPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 6 LALKYLL-TPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHh-hhHHHHhcccchhhHHHHHHHhc
Confidence 3456665 67666677788999999998753
No 23
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=35.93 E-value=1e+02 Score=21.08 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCceEEEee--cCCCCCCCChhHHH-H-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcE
Q 032406 4 IYSLYIINKSGGLIFYKD--YGSAGRMDTNDSLR-V-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTK 79 (141)
Q Consensus 4 i~~~~Ii~r~g~~iy~~~--~~~~~~~~~~~~~~-l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiK 79 (141)
+-+..+++|+|.+|-... |.+. +.+ .+.+- | ++.+-+...+++.+....- .. .....++..+|....-...=
T Consensus 26 v~~~~lvd~dG~vIa~~~~~~~~~-~~d-~~~lAAl~A~~~~a~~~la~~Lge~~~-~~-l~~eGe~~~i~i~~vg~~~i 101 (136)
T 3t12_B 26 ARYALLIDRKGFVLAHKEALWAPK-PPP-LDTLATLVASNAAATQALAKLLGEARF-QE-EVHQGERMGLYVDEAGEHAL 101 (136)
T ss_dssp CSEEEEEETTC-CCEEEECTTSCC-CSC-HHHHHHHHHHHHHHHHHHHHHTTCSCC-CC-EEEECSSCEEEEEESSTTEE
T ss_pred CeEEEEEcCCCCEEEEeccccCCC-CCc-HHHHHHHHHHHHHHHHHHHHHHCCCch-hH-heEEcCcCCEEEEEcCCCEE
Confidence 346789999999998863 4221 111 12222 3 5555578888888865321 12 24567888999888877788
Q ss_pred EEEEecCCch
Q 032406 80 FFVVCEPGTQ 89 (141)
Q Consensus 80 fvlitd~~~~ 89 (141)
++++.|++.+
T Consensus 102 Lvvifd~~~~ 111 (136)
T 3t12_B 102 LVLVFDETAP 111 (136)
T ss_dssp EEEEECTTSC
T ss_pred EEEEeCCCCC
Confidence 8888998753
No 24
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=29.49 E-value=1e+02 Score=21.20 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhhh
Q 032406 95 LKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRV 136 (141)
Q Consensus 95 l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~~ 136 (141)
|-.|-+..=..+|+||-|. +.....+++.++..|+-
T Consensus 16 mv~In~~lk~~~vknP~~~------~~~lk~kl~~Fi~~yk~ 51 (128)
T 2ope_A 16 MVGINNISKQFILKNPLDD------NQTIKSKLERFVSGYKM 51 (128)
T ss_dssp HHHHHHHHHHHTTTCSSCC------HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCcchh------hhhHHHHHHhhhccccc
Confidence 3344444445688999877 66667888888887753
No 25
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=22.65 E-value=40 Score=17.99 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHH
Q 032406 88 TQHMESLLKVIYE 100 (141)
Q Consensus 88 ~~~~~~~l~~iy~ 100 (141)
..++-++|++||+
T Consensus 5 ~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 5 SEGLMNVLKKIYE 17 (35)
T ss_dssp CCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 3568889999883
Done!