BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032408
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRI8|CENPS_XENLA Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1
Length = 135
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 17 EEDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFA 76
EE S T+ L+ S+ + A+ ++ SK IA IS++ F+ E AKDLE+FA
Sbjct: 6 EEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKDLEIFA 65
Query: 77 QHAGRKSVRMEDVILSAHRNERLAATLRSFRNDLKA 112
+HA R ++ M+DV L A R+ L A + +++ A
Sbjct: 66 RHAKRTTINMDDVKLLARRSRSLYAHISKCSDEIAA 101
>sp|Q8N2Z9|CENPS_HUMAN Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1
Length = 138
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 47 MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERL 99
M+ SK IA IS+L F+ E AKDLE+FA+HA R ++ EDV L A R+ L
Sbjct: 40 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 92
>sp|Q9D084|CENPS_MOUSE Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1
Length = 142
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 47 MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERL 99
+ SK IA IS++ F+ E AKDLE+FA+HA R +V EDV L A RN L
Sbjct: 39 VNFSKQTIAAISEVTFRQCENFAKDLEMFARHAKRSTVTTEDVKLLARRNNSL 91
>sp|Q2TBR7|CENPS_BOVIN Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1
Length = 138
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 36 SIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95
+ E A+ M+ SK IA IS++ F E AKDLE+FA+HA R ++ EDV L A R
Sbjct: 29 CLCEEVASDKDMQFSKQTIAAISEVTFGQCENFAKDLEMFARHAKRSTINTEDVKLLARR 88
Query: 96 NERL 99
+ L
Sbjct: 89 SHSL 92
>sp|E1BSW7|CENPS_CHICK Centromere protein S OS=Gallus gallus GN=APITD1 PE=1 SV=2
Length = 139
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 26 LRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVR 85
LR +T + + A G+ SK +A IS++ F+ E A+DLE+FA+HA R ++
Sbjct: 16 LRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTIT 75
Query: 86 MEDVILSAHRNERL 99
EDV L A R+ L
Sbjct: 76 SEDVKLLARRSNSL 89
>sp|O74807|YGNG_SCHPO Uncharacterized protein C2D10.16 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC2D10.16 PE=4 SV=2
Length = 110
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 57 ISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRSF 106
++++ ++ LAKD+E FA+HAGRK+V+ +DV+L RNE L + +F
Sbjct: 44 VTEMVWEQIRVLAKDIEAFAEHAGRKTVQPQDVLLCCRRNEGLYEIINNF 93
>sp|Q3TJM4|CENPT_MOUSE Centromere protein T OS=Mus musculus GN=Cenpt PE=2 SV=2
Length = 515
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 47 MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
M + K + + KY + L DLE+FA HAGRK V+ ED++L
Sbjct: 427 MPVEKTALEIVEKCLDKYFQHLCNDLEVFASHAGRKIVKPEDLLL 471
>sp|Q96BT3|CENPT_HUMAN Centromere protein T OS=Homo sapiens GN=CENPT PE=1 SV=2
Length = 561
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 63 KYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
KY + L DLE+FA HAGRK+V+ ED+ L
Sbjct: 489 KYFQHLCDDLEVFAAHAGRKTVKPEDLEL 517
>sp|Q4R5U8|CENPT_MACFA Centromere protein T OS=Macaca fascicularis GN=CENPT PE=2 SV=1
Length = 561
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 63 KYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
KY + L DLE+FA HAGRK+V+ ED+ L
Sbjct: 489 KYFQHLCDDLEVFAAHAGRKTVKPEDLEL 517
>sp|F1NPG5|CENPT_CHICK Centromere protein T OS=Gallus gallus GN=CENPT PE=1 SV=2
Length = 639
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 63 KYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
+Y +Q++ DLE ++QHAGRK+V M DV L
Sbjct: 567 RYFKQISSDLEAYSQHAGRKTVEMADVEL 595
>sp|Q561R1|CENPT_RAT Centromere protein T OS=Rattus norvegicus GN=Cenpt PE=2 SV=1
Length = 518
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 47 MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
M + K + + +Y ++L DLE+FA HAGRK+V+ +D+ L
Sbjct: 430 MPVEKAALEMVEKCLDEYFQRLCNDLEVFAAHAGRKTVKPKDLEL 474
>sp|Q9HGK9|YHLD_SCHPO Uncharacterized protein C800.13 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC800.13 PE=3 SV=1
Length = 479
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 54 IACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLA 100
+ S+L FK Q+A DL FA HA RK++ +DV+L R +++
Sbjct: 411 LTTASELFFK---QIANDLSAFADHAHRKTIDTQDVVLLMKRQRKIS 454
>sp|Q8SSI9|TAF9_ENCCU Transcription initiation factor TFIID subunit 9
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF9 PE=1
SV=1
Length = 137
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 45 IGMEISKP-IIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILS 92
+G+E +P +I + + A++YT + +D LFA+H GR + DV L+
Sbjct: 22 LGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTGRTHITTSDVKLA 70
>sp|Q9CLD5|KDKA_PASMU 3-deoxy-D-manno-octulosonic acid kinase OS=Pasteurella multocida
(strain Pm70) GN=kdkA PE=3 SV=1
Length = 240
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 16/70 (22%)
Query: 24 EILRDRFRLSTISIAEAEA--------NQIGMEISKPIIACISDLAFKY------TEQL- 68
+I RD +R ST+S A + A ++ G+ + KP+ AC+ +AF + TE++
Sbjct: 73 KINRDYYRFSTLSNARSFAEFSLLKQLHEAGLAVPKPLGACVEKVAFGFYRADLLTEKIE 132
Query: 69 -AKDLELFAQ 77
A+DL ++ Q
Sbjct: 133 HAQDLTVYLQ 142
>sp|A9KVC8|HSLO_SHEB9 33 kDa chaperonin OS=Shewanella baltica (strain OS195) GN=hslO PE=3
SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
+DAS+T++ + + T++ E E Q + + KP +A + F +EQL + LFA
Sbjct: 99 DDASLTDLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTGIWLFAD 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GKQAAGM 165
>sp|A6WHM8|HSLO_SHEB8 33 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=hslO PE=3
SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
+DAS+T++ + + T++ E E Q + + KP +A + F +EQL + LFA
Sbjct: 99 DDASLTDLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTGIWLFAD 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GKQAAGM 165
>sp|A3DAB1|HSLO_SHEB5 33 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=hslO PE=3 SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
+DAS+T++ + + T++ E E Q + + KP +A + F +EQL + LFA
Sbjct: 99 DDASLTDLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTGIWLFAD 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GKQAAGM 165
>sp|B8E3S8|HSLO_SHEB2 33 kDa chaperonin OS=Shewanella baltica (strain OS223) GN=hslO PE=3
SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
+DAS+T++ + + T++ E E Q + + KP +A + F +EQL + LFA
Sbjct: 99 DDASLTDLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTGIWLFAD 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GKQAAGM 165
>sp|Q8EKD2|HSLO_SHEON 33 kDa chaperonin OS=Shewanella oneidensis (strain MR-1) GN=hslO
PE=3 SV=1
Length = 286
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIA-CISDLAFKYTEQLAKDLELFA 76
+DAS+ ++ + + T++ E E Q + + KP +A C+ D F +EQL L LFA
Sbjct: 99 DDASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEDY-FNQSEQLPTALWLFA 157
Query: 77 QHAGRKSVRM 86
G+++ M
Sbjct: 158 D--GKQAAGM 165
>sp|A0KRH3|HSLO_SHESA 33 kDa chaperonin OS=Shewanella sp. (strain ANA-3) GN=hslO PE=3
SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIA-CISDLAFKYTEQLAKDLELFA 76
+DAS+ ++ + + T++ E E Q + + KP +A C+ D F +EQL L LFA
Sbjct: 99 DDASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEDY-FNQSEQLPTALWLFA 157
Query: 77 QHAGRKSVRM 86
G+++ M
Sbjct: 158 D--GKQAAGM 165
>sp|Q0I0F1|HSLO_SHESR 33 kDa chaperonin OS=Shewanella sp. (strain MR-7) GN=hslO PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIA-CISDLAFKYTEQLAKDLELFA 76
+DAS+ ++ + + T++ E E Q + + KP +A C+ D F +EQL L LFA
Sbjct: 99 DDASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEDY-FNQSEQLPTALWLFA 157
Query: 77 QHAGRKSVRM 86
G+++ M
Sbjct: 158 D--GKQAAGM 165
>sp|Q0HNY3|HSLO_SHESM 33 kDa chaperonin OS=Shewanella sp. (strain MR-4) GN=hslO PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIA-CISDLAFKYTEQLAKDLELFA 76
+DAS+ ++ + + T++ E E Q + + KP +A C+ D F +EQL L LFA
Sbjct: 99 DDASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEDY-FNQSEQLPTALWLFA 157
Query: 77 QHAGRKSVRM 86
G+++ M
Sbjct: 158 D--GKQAAGM 165
>sp|O74098|HARA_PYRHO Archaeal histone A OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1782.1
PE=1 SV=2
Length = 67
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y ++AK FA+HAGRK+V++ED+ L+
Sbjct: 36 YAIEIAKKAVEFARHAGRKTVKVEDIKLA 64
>sp|P61882|HARA_PYRFU Archaeal histone A OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1831 PE=3 SV=1
Length = 67
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y ++AK FA+HAGRK+V++ED+ L+
Sbjct: 36 YAIEVAKKAVEFARHAGRKTVKVEDIKLA 64
>sp|P61881|HARA_PYRAB Archaeal histone A OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB03470 PE=3 SV=1
Length = 67
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y ++AK FA+HAGRK+V++ED+ L+
Sbjct: 36 YAIEVAKKAVEFARHAGRKTVKVEDIKLA 64
>sp|Q3E835|YO086_YEAST Uncharacterized protein YOL086W-A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOL086W-A PE=1 SV=1
Length = 90
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 53 IIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVIL 91
I + +LA+ ++ DL+ FA+HAGR V D++L
Sbjct: 37 FINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLML 75
>sp|Q54F38|H3V1_DICDI Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1
Length = 619
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 46 GMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDV 89
G+ I+ + I Y +L +D L A HAGRK++R D+
Sbjct: 565 GLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDM 608
>sp|A1RPC1|HSLO_SHESW 33 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=hslO PE=3
SV=1
Length = 286
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
++AS+ ++ + + T++ E E Q + + KP +A + F +EQL L LFA
Sbjct: 99 DNASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTALWLFAN 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GQQAAGM 165
>sp|A4YBE6|HSLO_SHEPC 33 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC
BAA-453) GN=hslO PE=3 SV=1
Length = 286
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 18 EDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQ 77
++AS+ ++ + + T++ E E Q + + KP +A + F +EQL L LFA
Sbjct: 99 DNASLADLFGQGYMVITLTPDEGERYQGVVALDKPTLAACVEEYFNQSEQLPTALWLFAN 158
Query: 78 HAGRKSVRM 86
G+++ M
Sbjct: 159 --GQQAAGM 165
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y +L+K FA+HAGRK+V+ ED+ L+
Sbjct: 36 YAIELSKKAVDFARHAGRKTVKAEDIKLA 64
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y ++ K FA+HAGRK+V+ EDV L+
Sbjct: 36 YAIEVGKKATEFARHAGRKTVKAEDVRLA 64
>sp|Q9RMG3|CR2AD_BACTU Pesticidal crystal protein cry2Ad OS=Bacillus thuringiensis
GN=cry2Ad PE=2 SV=1
Length = 633
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 72 LELFAQHAGRKSVRMEDVILSAHRNERLAATLRSFRNDLK 111
L LFAQ A + DVIL+A AATLR+++N L+
Sbjct: 174 LPLFAQAANLHLSFIRDVILNAEEWGISAATLRTYQNHLR 213
>sp|Q9US12|YK66_SCHPO Putative zinc metalloproteinase C607.06c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC607.06c PE=2 SV=1
Length = 612
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 80 GRKSVRMEDVI-------LSAHRNERLAATLRSFRNDLKAKEPRS 117
GR+S R+E+ + LS ERL AT+ R+D A+E RS
Sbjct: 148 GRRSFRIEESVQPDTMSCLSPWGTERLTATINILRSDKTAEEIRS 192
>sp|P21254|CR2AB_BACTK Pesticidal crystal protein cry2Ab OS=Bacillus thuringiensis subsp.
kurstaki GN=cry2Ab PE=2 SV=1
Length = 633
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 72 LELFAQHAGRKSVRMEDVILSAHRNERLAATLRSFRNDLK 111
L LFAQ A + DVIL+A AATLR++R+ LK
Sbjct: 174 LPLFAQAANLHLSFIRDVILNADEWGISAATLRTYRDYLK 213
>sp|Q9Y8I2|HARB_PYRKO Archaeal histone B OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkB PE=3 SV=1
Length = 67
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 67 QLAKDLELFAQHAGRKSVRMEDVILS 92
++AK AQHAGRK+V+ ED+ L+
Sbjct: 39 EIAKKAVALAQHAGRKTVKAEDIKLA 64
>sp|P50485|HARA_PYRSG Archaeal histone A OS=Pyrococcus sp. (strain GB-3a) GN=hpyA1 PE=3
SV=1
Length = 67
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y +++K FA+HAGRK+V+ ED+ L+
Sbjct: 36 YAIEVSKKAVEFARHAGRKTVKAEDIKLA 64
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 64 YTEQLAKDLELFAQHAGRKSVRMEDVILS 92
Y Q+ K A+HAGRK+V+++D+ L+
Sbjct: 40 YAMQIGKKAAELAKHAGRKTVKVDDIKLA 68
>sp|O27731|HMT2_METTH DNA-binding protein HMt-1.2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA2 PE=3 SV=3
Length = 68
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 66 EQLAKDLELFAQHAGRKSVRMEDVILSAHR 95
E++AK+ A+HAGRK+V+ D+ L+A +
Sbjct: 38 EEIAKEAVKLAKHAGRKTVKASDIELAAKK 67
>sp|Q03064|MOT1_CRILO Monocarboxylate transporter 1 OS=Cricetulus longicaudatus
GN=SLC16A1 PE=1 SV=1
Length = 494
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 110 LKAKEPRSERKRKKSSTREDITTTNVVQVP 139
L AKE ++E K+K+ +ED T+T+V + P
Sbjct: 440 LVAKEQKAEEKQKQEEGKEDDTSTDVDEKP 469
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 66 EQLAKDLELFAQHAGRKSVRMEDV 89
E+LAK A+HAGRK+V+ ED+
Sbjct: 38 EELAKKAVELAKHAGRKTVKAEDI 61
>sp|A6VD64|ORN_PSEA7 Oligoribonuclease OS=Pseudomonas aeruginosa (strain PA7) GN=orn
PE=3 SV=1
Length = 180
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 2 EEETNGIDEERKQQHEEDASVTEILRDRFRLSTISIAEAEANQIGM 47
EE G+DE +QH + L R R ST+S+AEAEA +
Sbjct: 51 EEVLAGMDEWNTRQHGQSG-----LTQRVRESTVSMAEAEAQTLAF 91
>sp|P57665|ORN_PSEAE Oligoribonuclease OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=orn PE=3 SV=1
Length = 180
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 2 EEETNGIDEERKQQHEEDASVTEILRDRFRLSTISIAEAEANQIGM 47
EE G+DE +QH + L R R ST+S+AEAEA +
Sbjct: 51 EEILAGMDEWNTRQHGQSG-----LTQRVRESTVSMAEAEAQTLAF 91
>sp|Q02F67|ORN_PSEAB Oligoribonuclease OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=orn PE=3 SV=1
Length = 180
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 2 EEETNGIDEERKQQHEEDASVTEILRDRFRLSTISIAEAEANQIGM 47
EE G+DE +QH + L R R ST+S+AEAEA +
Sbjct: 51 EEILAGMDEWNTRQHGQSG-----LTQRVRESTVSMAEAEAQTLAF 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,732,403
Number of Sequences: 539616
Number of extensions: 1473795
Number of successful extensions: 5551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 5487
Number of HSP's gapped (non-prelim): 110
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)