Query 032408
Match_columns 141
No_of_seqs 107 out of 302
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vh5_A CENP-S; histone fold, c 100.0 3.1E-35 1.1E-39 225.4 12.9 109 16-124 7-115 (140)
2 4dra_A Centromere protein S; D 100.0 3.5E-34 1.2E-38 212.9 12.1 96 17-112 16-111 (113)
3 3b0b_B CENP-S, centromere prot 100.0 1.8E-33 6.3E-38 207.1 12.5 99 16-114 7-105 (107)
4 3v9r_A MHF1, uncharacterized p 100.0 1.1E-33 3.6E-38 202.9 9.4 84 22-105 6-89 (90)
5 1taf_A TFIID TBP associated fa 99.7 5.9E-17 2E-21 110.6 7.0 60 33-95 6-65 (68)
6 3b0c_T CENP-T, centromere prot 99.7 8.4E-17 2.9E-21 118.2 7.0 65 33-100 12-76 (111)
7 1ku5_A HPHA, archaeal histon; 99.6 1.3E-15 4.5E-20 102.6 6.5 59 33-94 11-69 (70)
8 2hue_C Histone H4; mini beta s 99.5 3.7E-14 1.3E-18 99.1 5.6 61 33-96 15-75 (84)
9 1id3_B Histone H4; nucleosome 99.5 8E-14 2.7E-18 101.0 5.9 62 33-97 33-94 (102)
10 2yfw_B Histone H4, H4; cell cy 99.4 3.7E-13 1.3E-17 97.2 5.7 63 32-97 33-95 (103)
11 1tzy_D Histone H4-VI; histone- 99.4 4.9E-13 1.7E-17 96.5 5.9 62 33-97 34-95 (103)
12 1taf_B TFIID TBP associated fa 99.3 7.4E-12 2.5E-16 85.8 7.2 59 33-94 11-69 (70)
13 1b67_A Protein (histone HMFA); 99.3 1.5E-11 5.2E-16 81.8 7.5 60 33-95 7-66 (68)
14 1f1e_A Histone fold protein; a 99.1 9.5E-11 3.2E-15 90.6 6.6 61 33-96 87-147 (154)
15 2l5a_A Histone H3-like centrom 99.0 7.8E-11 2.7E-15 96.6 3.2 74 21-97 154-227 (235)
16 1jfi_B DR1 protein, transcript 99.0 8.8E-10 3E-14 87.1 9.1 79 32-112 19-99 (179)
17 2ly8_A Budding yeast chaperone 99.0 2.7E-10 9.2E-15 85.3 5.6 53 45-97 60-113 (121)
18 2hue_B Histone H3; mini beta s 99.0 1.4E-09 4.8E-14 75.7 8.4 63 33-95 8-72 (77)
19 3nqj_A Histone H3-like centrom 99.0 2.6E-09 8.9E-14 75.2 9.1 63 33-95 8-74 (82)
20 1n1j_A NF-YB; histone-like PAI 99.0 2.4E-09 8.2E-14 75.3 8.9 66 32-98 12-77 (93)
21 1f1e_A Histone fold protein; a 98.9 1E-09 3.6E-14 84.8 6.3 60 33-95 9-69 (154)
22 2yfv_A Histone H3-like centrom 98.9 6.8E-09 2.3E-13 75.3 8.3 63 32-94 31-98 (100)
23 2byk_B Chrac-14; nucleosome sl 98.9 1.5E-08 5E-13 75.9 10.1 77 33-110 14-92 (128)
24 3b0c_W CENP-W, centromere prot 98.8 7.9E-09 2.7E-13 70.5 7.0 60 33-94 9-68 (76)
25 3nqu_A Histone H3-like centrom 98.8 2.1E-08 7.2E-13 76.7 8.2 63 33-95 66-132 (140)
26 3r45_A Histone H3-like centrom 98.7 2.3E-08 7.7E-13 77.8 7.1 63 33-95 82-148 (156)
27 1tzy_C Histone H3; histone-fol 98.7 7.5E-08 2.5E-12 73.2 8.6 63 33-95 67-131 (136)
28 2f8n_G Core histone macro-H2A. 98.3 1.4E-06 4.7E-11 64.7 6.4 80 25-104 16-96 (120)
29 1n1j_B NF-YC; histone-like PAI 98.3 1.3E-06 4.5E-11 62.0 5.7 64 34-99 25-88 (97)
30 2nqb_C Histone H2A; nucleosome 98.3 1.7E-06 5.9E-11 64.3 6.4 80 25-104 17-97 (123)
31 1tzy_A Histone H2A-IV; histone 98.2 2.1E-06 7.1E-11 64.4 6.3 81 25-105 19-100 (129)
32 1f66_C Histone H2A.Z; nucleoso 98.2 2.3E-06 7.8E-11 64.1 5.7 80 25-104 21-102 (128)
33 2f8n_K Histone H2A type 1; nuc 98.2 3.2E-06 1.1E-10 65.1 6.0 82 24-105 37-119 (149)
34 1id3_C Histone H2A.1; nucleoso 98.1 3.3E-06 1.1E-10 63.4 5.0 79 27-105 21-100 (131)
35 2jss_A Chimera of histone H2B. 98.1 5.6E-06 1.9E-10 65.2 5.9 78 27-104 101-180 (192)
36 2nqb_D Histone H2B; nucleosome 98.0 2.1E-05 7.3E-10 59.0 7.8 62 32-95 37-98 (123)
37 1jfi_A Transcription regulator 98.0 4.9E-06 1.7E-10 59.3 3.5 53 47-99 28-80 (98)
38 1tzy_B Histone H2B; histone-fo 98.0 2.4E-05 8.2E-10 58.9 7.4 62 32-95 40-101 (126)
39 4g92_C HAPE; transcription fac 97.9 3.4E-05 1.2E-09 56.7 6.5 64 34-99 47-110 (119)
40 2l5a_A Histone H3-like centrom 97.7 0.00011 3.7E-09 60.3 8.4 62 34-95 17-83 (235)
41 2jss_A Chimera of histone H2B. 97.6 0.00031 1E-08 55.2 8.3 62 32-95 7-68 (192)
42 1h3o_B Transcription initiatio 97.1 0.0029 9.8E-08 43.6 8.3 52 45-96 20-71 (76)
43 2byk_A Chrac-16; nucleosome sl 97.0 0.0004 1.4E-08 52.5 3.6 72 28-99 16-89 (140)
44 3uk6_A RUVB-like 2; hexameric 94.3 0.3 1E-05 38.7 9.3 61 35-95 265-329 (368)
45 1g8p_A Magnesium-chelatase 38 90.9 1.2 4.2E-05 34.7 8.4 50 45-94 264-320 (350)
46 3bos_A Putative DNA replicatio 90.2 1.3 4.3E-05 32.1 7.4 60 34-94 179-241 (242)
47 3k1j_A LON protease, ATP-depen 89.7 2.8 9.5E-05 36.7 10.5 75 35-109 300-389 (604)
48 2ly8_A Budding yeast chaperone 89.6 1 3.5E-05 33.3 6.5 49 34-82 11-60 (121)
49 1jr3_D DNA polymerase III, del 88.5 0.59 2E-05 37.2 5.0 62 34-95 147-208 (343)
50 2chg_A Replication factor C sm 87.6 1.8 6.1E-05 30.5 6.6 57 36-94 168-224 (226)
51 2c9o_A RUVB-like 1; hexameric 87.2 2.4 8.4E-05 35.6 8.2 60 36-95 373-436 (456)
52 4dra_E Centromere protein X; D 85.9 2.3 8E-05 29.5 6.1 60 33-93 17-77 (84)
53 2r44_A Uncharacterized protein 85.0 5 0.00017 31.4 8.5 50 45-94 223-295 (331)
54 1sxj_D Activator 1 41 kDa subu 84.2 0.73 2.5E-05 35.9 3.3 61 35-95 198-262 (353)
55 3ksy_A SOS-1, SON of sevenless 83.9 1.2 4.2E-05 42.0 5.2 80 27-106 100-179 (1049)
56 3b0b_C CENP-X, centromere prot 83.3 4.8 0.00016 27.6 6.8 59 34-93 14-73 (81)
57 2v1u_A Cell division control p 83.2 4.9 0.00017 31.3 7.7 50 46-95 220-275 (387)
58 3pvs_A Replication-associated 79.4 5.2 0.00018 34.1 7.1 70 45-114 188-270 (447)
59 3nbx_X ATPase RAVA; AAA+ ATPas 79.3 13 0.00043 32.4 9.6 48 45-92 222-282 (500)
60 1in4_A RUVB, holliday junction 77.5 8.8 0.0003 30.6 7.6 63 33-95 184-249 (334)
61 1h3o_A Transcription initiatio 77.1 2.5 8.5E-05 28.9 3.6 49 28-79 6-54 (75)
62 1njg_A DNA polymerase III subu 75.1 8.7 0.0003 27.0 6.2 53 37-93 193-248 (250)
63 3u61_B DNA polymerase accessor 74.2 2.9 0.0001 32.6 3.8 54 39-95 182-236 (324)
64 1wwi_A Hypothetical protein TT 71.9 10 0.00034 29.0 6.2 68 34-108 8-75 (148)
65 2qby_A CDC6 homolog 1, cell di 68.0 32 0.0011 26.4 8.5 50 46-95 216-271 (386)
66 2qby_B CDC6 homolog 3, cell di 67.5 21 0.00073 27.8 7.5 49 46-96 216-270 (384)
67 2keb_A DNA polymerase subunit 67.0 22 0.00076 25.5 6.8 53 34-87 28-83 (101)
68 1hqc_A RUVB; extended AAA-ATPa 66.1 12 0.00042 28.7 5.7 59 36-94 175-236 (324)
69 1fnn_A CDC6P, cell division co 64.6 45 0.0015 25.8 8.8 49 47-95 213-273 (389)
70 3kw6_A 26S protease regulatory 63.2 9 0.00031 24.4 3.8 36 60-95 37-72 (78)
71 1r4v_A Hypothetical protein AQ 62.6 12 0.00042 29.1 5.1 68 34-108 32-99 (171)
72 1sxj_C Activator 1 40 kDa subu 61.0 19 0.00064 28.4 6.1 61 36-96 176-239 (340)
73 3pfi_A Holliday junction ATP-d 59.5 28 0.00097 27.0 6.8 61 35-95 190-253 (338)
74 2chq_A Replication factor C sm 59.4 16 0.00054 27.6 5.2 60 35-96 167-226 (319)
75 3aji_B S6C, proteasome (prosom 58.3 9.7 0.00033 24.5 3.3 40 61-100 36-76 (83)
76 1bh9_B TAFII28; histone fold, 58.1 42 0.0014 23.0 8.3 61 33-96 21-82 (89)
77 2dzn_B 26S protease regulatory 57.9 12 0.00041 24.2 3.7 37 60-96 32-68 (82)
78 1iqp_A RFCS; clamp loader, ext 57.8 19 0.00065 27.3 5.4 58 36-95 176-233 (327)
79 1jr3_A DNA polymerase III subu 57.0 19 0.00065 28.0 5.4 56 35-94 184-242 (373)
80 3f9v_A Minichromosome maintena 52.8 8.4 0.00029 34.0 3.0 49 46-94 519-585 (595)
81 4e2i_2 DNA polymerase alpha su 51.6 20 0.00067 24.5 4.1 49 41-89 11-62 (78)
82 3vlf_B 26S protease regulatory 51.0 19 0.00065 23.7 3.9 42 54-95 25-70 (88)
83 1sxj_B Activator 1 37 kDa subu 50.9 41 0.0014 25.3 6.3 59 36-96 173-231 (323)
84 2z4s_A Chromosomal replication 48.7 44 0.0015 27.9 6.7 61 35-96 269-332 (440)
85 1r6b_X CLPA protein; AAA+, N-t 48.5 86 0.003 27.6 8.8 58 38-95 362-432 (758)
86 1sxj_A Activator 1 95 kDa subu 45.5 20 0.00069 30.5 4.1 52 41-94 221-272 (516)
87 3v9r_B MHF2, uncharacterized p 44.5 25 0.00085 24.7 3.8 60 33-92 6-72 (88)
88 3f8t_A Predicted ATPase involv 44.3 90 0.0031 27.8 8.2 27 68-94 455-481 (506)
89 1l8q_A Chromosomal replication 43.4 19 0.00064 28.0 3.4 59 34-93 171-237 (324)
90 2krk_A 26S protease regulatory 43.3 27 0.00092 23.1 3.7 34 62-95 47-80 (86)
91 1lv7_A FTSH; alpha/beta domain 43.3 30 0.001 25.8 4.4 35 61-95 217-251 (257)
92 2l09_A ASR4154 protein; proto- 41.6 28 0.00095 22.8 3.4 45 48-93 4-49 (62)
93 2qz4_A Paraplegin; AAA+, SPG7, 41.4 40 0.0014 24.8 4.8 59 37-95 185-248 (262)
94 2kru_A Light-independent proto 39.8 30 0.001 22.7 3.4 44 48-92 5-49 (63)
95 1w5s_A Origin recognition comp 37.8 1.4E+02 0.0048 23.2 7.7 47 48-94 236-291 (412)
96 3zri_A CLPB protein, CLPV; cha 36.0 52 0.0018 24.4 4.7 48 66-114 104-152 (171)
97 2ob9_A Tail assembly chaperone 35.9 1E+02 0.0035 22.9 6.2 50 62-111 63-116 (130)
98 1sxj_E Activator 1 40 kDa subu 35.7 52 0.0018 25.4 4.8 55 34-89 198-253 (354)
99 3h4m_A Proteasome-activating n 33.7 53 0.0018 24.6 4.4 35 61-95 223-257 (285)
100 1fad_A Protein (FADD protein); 32.6 1.1E+02 0.0037 20.2 6.2 49 56-107 12-61 (99)
101 2rgq_A Domain of unknown funct 31.3 47 0.0016 22.7 3.5 31 46-76 1-32 (144)
102 4b4t_H 26S protease regulatory 31.2 65 0.0022 28.2 5.1 44 52-95 405-449 (467)
103 4b4t_J 26S protease regulatory 29.8 44 0.0015 28.6 3.7 36 60-95 353-388 (405)
104 3fes_A ATP-dependent CLP endop 29.3 99 0.0034 21.5 5.0 41 66-106 87-129 (145)
105 4b4t_I 26S protease regulatory 28.8 46 0.0016 28.9 3.7 36 60-95 387-422 (437)
106 3fh2_A Probable ATP-dependent 28.3 1.3E+02 0.0045 20.8 5.6 41 66-106 87-129 (146)
107 1ixz_A ATP-dependent metallopr 26.2 69 0.0024 23.7 3.9 47 47-93 202-253 (254)
108 4b4t_L 26S protease subunit RP 25.1 77 0.0026 27.2 4.4 36 60-95 386-421 (437)
109 3vfd_A Spastin; ATPase, microt 24.7 2.7E+02 0.0091 22.2 8.3 61 35-95 288-364 (389)
110 4b4t_M 26S protease regulatory 24.4 60 0.002 27.8 3.6 47 49-95 374-421 (434)
111 3syl_A Protein CBBX; photosynt 24.3 2.3E+02 0.0077 21.2 7.0 29 33-61 208-236 (309)
112 2bjv_A PSP operon transcriptio 24.1 1.4E+02 0.0047 22.2 5.3 42 48-92 208-253 (265)
113 3dd4_A KV channel-interacting 23.3 1.3E+02 0.0046 21.9 5.0 37 70-106 189-225 (229)
114 3b9p_A CG5977-PA, isoform A; A 22.3 1.9E+02 0.0065 21.6 5.8 60 36-95 196-271 (297)
115 1iy2_A ATP-dependent metallopr 22.1 92 0.0031 23.6 4.0 47 47-93 226-277 (278)
116 2bk9_A CG9734-PA; oxygen trans 21.8 2.1E+02 0.0071 19.9 6.5 34 69-106 86-120 (153)
117 1u5t_A Appears to BE functiona 21.3 2.5E+02 0.0086 22.3 6.5 50 50-110 21-71 (233)
118 1k6k_A ATP-dependent CLP prote 20.5 1.7E+02 0.0057 19.8 4.8 40 65-104 6-45 (143)
119 4b4t_K 26S protease regulatory 20.2 1E+02 0.0035 26.2 4.2 35 61-95 379-413 (428)
No 1
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=100.00 E-value=3.1e-35 Score=225.35 Aligned_cols=109 Identities=31% Similarity=0.465 Sum_probs=93.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 16 HEEDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 16 ~~~~~~~~~~LKaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|+.+.+.++||++|||+|++||++++...|+.|||+|+++|+|++|+|+.+||.||+.||+||||+||+++||+|++||
T Consensus 7 ~~~~~~~~~rLKaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 7 GEQRELLIQRLRAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhccCCchhhhhhcc
Q 032408 96 NERLAATLRSFRNDLKAKEPRSERKRKKS 124 (141)
Q Consensus 96 n~~L~~~l~~~~~el~~~~~~~~~krKk~ 124 (141)
||+|.++|++|.++|...+..++.||||.
T Consensus 87 n~~L~~~L~~~~~el~~~~~~~~~~~k~k 115 (140)
T 3vh5_A 87 SNSLLKYITQKSDELASSNMEQKEKKKKK 115 (140)
T ss_dssp SHHHHHHHHHHHHHHHHC-----------
T ss_pred CHHHHHHHHHHHHHHHhhhHHHhhhhhcc
Confidence 99999999999999987665544444443
No 2
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=100.00 E-value=3.5e-34 Score=212.92 Aligned_cols=96 Identities=32% Similarity=0.444 Sum_probs=90.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 17 EEDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 17 ~~~~~~~~~LKaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
.++-+.+++||++|||+|+|||+++|++.|+.|||+++++|+|++|+|+.+||.||++||+||||+||+++||+|++|||
T Consensus 16 ~~~~~~~~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 16 QQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 032408 97 ERLAATLRSFRNDLKA 112 (141)
Q Consensus 97 ~~L~~~l~~~~~el~~ 112 (141)
|+|.++|++|.+++..
T Consensus 96 ~~L~~~l~~~~~el~~ 111 (113)
T 4dra_A 96 NSLLKYITDKSEEIAQ 111 (113)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999864
No 3
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=100.00 E-value=1.8e-33 Score=207.10 Aligned_cols=99 Identities=30% Similarity=0.457 Sum_probs=93.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 16 HEEDASVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 16 ~~~~~~~~~~LKaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|++.+..++||++|||+|+|||+++|...|++|||+++.+|+|++|+|+.+|+.||+.||+||||+||+++||+|++||
T Consensus 7 ~~~~~~~~~~LKaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 7 GEQRELLIQRLRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhccC
Q 032408 96 NERLAATLRSFRNDLKAKE 114 (141)
Q Consensus 96 n~~L~~~l~~~~~el~~~~ 114 (141)
||.|++.|+++.++++..+
T Consensus 87 n~~l~~~l~~~~~el~~~~ 105 (107)
T 3b0b_B 87 SNSLLKYITQKSDELASSN 105 (107)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998654
No 4
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=202.89 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHH
Q 032408 22 VTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAA 101 (141)
Q Consensus 22 ~~~~LKaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~ 101 (141)
.+++||++|||+|++||++++...|+.|||+|+++|+|++|+|+.+||.||+.||+||||+||+++||+|++||||+|.+
T Consensus 6 ~~~~LKaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~ 85 (90)
T 3v9r_A 6 DRAQLKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQE 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHH
Confidence 67999999999999999999777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 032408 102 TLRS 105 (141)
Q Consensus 102 ~l~~ 105 (141)
+|++
T Consensus 86 ~l~~ 89 (90)
T 3v9r_A 86 RVTQ 89 (90)
T ss_dssp HHCC
T ss_pred Hhhc
Confidence 8853
No 5
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.68 E-value=5.9e-17 Score=110.61 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|.+|+++.|.+ +|+|+++.+|.|++|+|+.+|++|+..||+||||+||+.+||+|+++.
T Consensus 6 ~i~~iLk~~G~~---~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNVQ---EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTCC---CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCCc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 478888888887 999999999999999999999999999999999999999999999875
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.67 E-value=8.4e-17 Score=118.20 Aligned_cols=65 Identities=28% Similarity=0.388 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLA 100 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~ 100 (141)
.|.||+++.| +.+||++++.+|.++++.|++.++.|++.||+|||||||+++||.+++|||+.+.
T Consensus 12 ~I~Ri~r~~g---~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~ 76 (111)
T 3b0c_T 12 LIKQIFSHYV---KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVT 76 (111)
T ss_dssp HHHHHHHHHH---CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSB
T ss_pred HHHHHHHHCC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcc
Confidence 5788998886 5599999999999999999999999999999999999999999999999999653
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.60 E-value=1.3e-15 Score=102.60 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.|.||+++.| ..++|++++.+|.++++.|+..++.|+..||.||||+||+++||.|++|
T Consensus 11 ~v~Rl~r~~g---~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKAG---AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHTT---CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHcC---cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 6889999875 4599999999999999999999999999999999999999999999986
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.48 E-value=3.7e-14 Score=99.05 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
+|.||+++.|.. ++|+++..+|.++++.|+++++.|+..||+|||||||+++||.++++++
T Consensus 15 ~I~Riar~~Gv~---rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 15 AIRRLARRGGVK---RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHTTCC---EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHcCch---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 578999888765 8999999999999999999999999999999999999999999999986
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.45 E-value=8e-14 Score=100.97 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE 97 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~ 97 (141)
+|.||+++.|.. ++|+++..+|.++++.|+++|+.|+..||+||||+||+++||.++++++.
T Consensus 33 ~I~Rlar~~Gv~---rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 33 AIRRLARRGGVK---RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp HHHHHHHHTTCC---EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHcCch---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 688888887654 89999999999999999999999999999999999999999999999873
No 10
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.39 E-value=3.7e-13 Score=97.21 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE 97 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~ 97 (141)
=+|.||++..|.. +||.++..+|.++++.|+.+|+.|+..||+||||+||+++||.+++|++.
T Consensus 33 ~~I~Rlar~~G~~---rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 33 PAIRRLARRGGVK---RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHTTCC---EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 3678888877654 89999999999999999999999999999999999999999999999874
No 11
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.38 E-value=4.9e-13 Score=96.48 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE 97 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~ 97 (141)
+|.||++..|.. +||.++..+|.++++.|+.+|+.|+..||+||||+||+++||.+++|++.
T Consensus 34 ~I~Rlar~~G~~---rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 34 AIRRLARRGGVK---RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHTTCC---EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 678888887654 89999999999999999999999999999999999999999999999873
No 12
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.29 E-value=7.4e-12 Score=85.79 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
+|.+|+++.|.+ ++|+++...|.+-++.++.+|++++..|++||||+|++.+||.++.|
T Consensus 11 ~v~~iaes~Gi~---~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 11 SMKVIAESIGVG---SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHTTCC---CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 688999999888 99999999999999999999999999999999999999999999875
No 13
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.26 E-value=1.5e-11 Score=81.82 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|.||+++. .+.++|.+++.+|.++++.|+..++.|+..+|.|+||+||+++||.++.|+
T Consensus 7 ~v~Ri~k~~---~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 7 PIGRIIKNA---GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHT---TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHhcC---CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 578899887 467999999999999999999999999999999999999999999999875
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.11 E-value=9.5e-11 Score=90.64 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
.|.||+++.|.. +||.++..+|.+++..|+..++.++..||+|+|||||+++||.+++++|
T Consensus 87 ~V~Ri~k~~g~~---RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 87 TVRRILKRAGIE---RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHTTCC---EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 588999998544 9999999999999999999999999999999999999999999999875
No 15
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.8e-11 Score=96.61 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH
Q 032408 21 SVTEILRDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE 97 (141)
Q Consensus 21 ~~~~~LKaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~ 97 (141)
....-|+..+..++.||+++.|.. +||.++...+.+.+..|+++|++|+..||+|||||||+++||.++.++..
T Consensus 154 r~~~vLrD~i~i~~~RlaRrgGVk---RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 154 KYTSVLRDIIDISDEEDGDKGGVK---RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp THHHHHHHHHHHTCCTTSCCTTCC---TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcccHHHHhhcCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 456678888876666888888777 99999999999999999999999999999999999999999999999875
No 16
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.03 E-value=8.8e-10 Score=87.12 Aligned_cols=79 Identities=6% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc--HHHHHHHHHHHHH
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN--ERLAATLRSFRND 109 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn--~~L~~~l~~~~~e 109 (141)
-.|.||+++.+. +++||.++..+|.+++..|+..|+..+..+|.|+|||||+.+||..++... +....-|..++.+
T Consensus 19 A~V~RImK~alp--~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~lk~~L~~ 96 (179)
T 1jfi_B 19 AAINKMIKETLP--NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQE 96 (179)
T ss_dssp HHHHHHHHHHST--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 368999999975 789999999999999999999999999999999999999999999999874 3555566666665
Q ss_pred hhc
Q 032408 110 LKA 112 (141)
Q Consensus 110 l~~ 112 (141)
.+.
T Consensus 97 yre 99 (179)
T 1jfi_B 97 CKT 99 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 17
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.7e-10 Score=85.28 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=49.8
Q ss_pred cC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH
Q 032408 45 IG-MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE 97 (141)
Q Consensus 45 ~~-~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~ 97 (141)
.| -+||.++...+.+.+..|+++|++|+..|++|||||||+++||.++.+|+.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 34 469999999999999999999999999999999999999999999999875
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.01 E-value=1.4e-09 Score=75.67 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQ--IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~--~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+.|++++.+.. .+.+++.+++.+|.|.++.|+..+.+|....|.||||.||.+.|+.|+.|-
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 456777776543 368999999999999999999999999999999999999999999999874
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.99 E-value=2.6e-09 Score=75.16 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQ----IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~----~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+.|++++.+.. .+.+++++++.+|-|.++.|+..+.+|....|.||||.||.+.|+.|+.|-
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 345555555533 367999999999999999999999999999999999999999999998764
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.99 E-value=2.4e-09 Score=75.30 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHH
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNER 98 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~ 98 (141)
-.|.||+++.+.. +.++|.++..+|.+++..|+..++.++..+|.|+||+||+.+||..++++...
T Consensus 12 a~i~ri~K~~~~~-~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 12 ANVARIMKNAIPQ-TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp HHHHHHHHHTSCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCc-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 3688999988643 57899999999999999999999999999999999999999999999987653
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.95 E-value=1e-09 Score=84.77 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=55.7
Q ss_pred HHHHHHHHH-HhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAE-ANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~-~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|.||+++. |. .+||.++..+|.+++..|+..++.++..||+|+|||||+++||+.++..
T Consensus 9 ~V~Riik~~lg~---~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 9 AIERIFRQGIGE---RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHHHHHTTSTT---CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 688999998 65 5999999999999999999999999999999999999999999998843
No 22
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.89 E-value=6.8e-09 Score=75.29 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhc-----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 32 LSTISIAEAEANQI-----GMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 32 y~V~rI~ee~~~~~-----~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
..+.|++++.+... +.+++.+++.+|.|.++.|+..+.+|....|.||||.||.+.|+.|+.|
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 34567777776542 5799999999999999999999999999999999999999999999976
No 23
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.88 E-value=1.5e-08 Score=75.86 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH--HHHHHHHHHHHHh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE--RLAATLRSFRNDL 110 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~--~L~~~l~~~~~el 110 (141)
.|.||+++.+- .+..||.++..+|++++..|+..|+..+..+|.|.||+||+.+||..++.+.. ....-|..++.+.
T Consensus 14 ~I~rImK~~~p-d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~lk~~l~~y 92 (128)
T 2byk_B 14 VIGRLIKEALP-ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVY 92 (128)
T ss_dssp HHHHHHHHHSC-TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 58899998753 36789999999999999999999999999999999999999999999999865 2333344444433
No 24
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.84 E-value=7.9e-09 Score=70.52 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.|.||+++.. + +++||.++...|.+++..|+..|+..+..+|+|+||+||+.+||..+++
T Consensus 9 ~V~rI~K~~~-p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 9 TLRKIIKKHK-P-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHHC-T-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHhC-C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 5889999873 2 6799999999999999999999999999999999999999999998875
No 25
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.78 E-value=2.1e-08 Score=76.70 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQ----IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~----~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+.+++.+.+.. .+.+++.+++.+|-|.++.|+..+.+|....|.||||.||.+.||.|+.|-
T Consensus 66 PF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 66 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp HHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 345555555533 468999999999999999999999999999999999999999999998764
No 26
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.73 E-value=2.3e-08 Score=77.76 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQ----IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~----~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+.|++++.+.. .+.+|+.+++.+|-|.++.|+..|.+|....|.||||.||.+.||.|+.|-
T Consensus 82 PF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 82 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 456777777654 357999999999999999999999999999999999999999999998764
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.68 E-value=7.5e-08 Score=73.23 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQ--IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~--~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+.|++++.+.. .+.+|+.+++.+|.|.++.|+..+.+|....|.||||.||.+.||.|+.|-
T Consensus 67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 345555555432 368999999999999999999999999999999999999999999999864
No 28
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.29 E-value=1.4e-06 Score=64.66 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHH
Q 032408 25 ILRDRFRLSTISIAEAEANQI-GMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATL 103 (141)
Q Consensus 25 ~LKaaL~y~V~rI~ee~~~~~-~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l 103 (141)
--|+-|+|.|++|-+-.-... .-+|+..+...|+.+++.++.+|..-+-..|+|+||++|+++||.|+++.+..|..++
T Consensus 16 s~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll 95 (120)
T 2f8n_G 16 SAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLL 95 (120)
T ss_dssp HHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred ccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHh
Confidence 457889999887754442221 3489999999999999999999999999999999999999999999999999988776
Q ss_pred H
Q 032408 104 R 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 96 ~ 96 (120)
T 2f8n_G 96 K 96 (120)
T ss_dssp T
T ss_pred C
Confidence 4
No 29
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=1.3e-06 Score=61.98 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERL 99 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L 99 (141)
|.||++... ...+||.++...|+..++-++..++..+..+|+|.||+||+.+||.+++++++.+
T Consensus 25 IkrImK~~~--~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~ 88 (97)
T 1n1j_B 25 IKKIMKLDE--DVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQF 88 (97)
T ss_dssp HHHHHTTST--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGG
T ss_pred HHHHHccCc--cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHH
Confidence 445555442 2247999999999999999999999999999999999999999999999988754
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.26 E-value=1.7e-06 Score=64.34 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHH
Q 032408 25 ILRDRFRLSTISIAEAEANQ-IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATL 103 (141)
Q Consensus 25 ~LKaaL~y~V~rI~ee~~~~-~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l 103 (141)
--|+-|+|.|++|-+-.-.. ..-+|+..+...|+.+++.++.+|..-+-..|+|+||++|+++||.|+++.+..|..++
T Consensus 17 s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll 96 (123)
T 2nqb_C 17 SNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 96 (123)
T ss_dssp HHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred cccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHh
Confidence 45778899998876544322 23489999999999999999999999999999999999999999999999999988776
Q ss_pred H
Q 032408 104 R 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 97 ~ 97 (123)
T 2nqb_C 97 S 97 (123)
T ss_dssp T
T ss_pred c
Confidence 5
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.23 E-value=2.1e-06 Score=64.42 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHH
Q 032408 25 ILRDRFRLSTISIAEAEANQ-IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATL 103 (141)
Q Consensus 25 ~LKaaL~y~V~rI~ee~~~~-~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l 103 (141)
--|+-|+|.|++|-+-.-.. ..-+|+..+...|+.+++.++.+|..-+...|+|+||++|+++||.|+++.+..|..++
T Consensus 19 S~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~ 98 (129)
T 1tzy_A 19 SSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 98 (129)
T ss_dssp HHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred cccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHh
Confidence 45788999998876544332 23489999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 032408 104 RS 105 (141)
Q Consensus 104 ~~ 105 (141)
..
T Consensus 99 ~~ 100 (129)
T 1tzy_A 99 GK 100 (129)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 32
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.18 E-value=2.3e-06 Score=64.12 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHH
Q 032408 25 ILRDRFRLSTISIAEAEANQI--GMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAAT 102 (141)
Q Consensus 25 ~LKaaL~y~V~rI~ee~~~~~--~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~ 102 (141)
--|+-|+|.|++|-+-.-... ..+|+..+...|+.+++.++.+|.+-+-..|+|+||++|++.||.|+++.+..|..+
T Consensus 21 S~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~L 100 (128)
T 1f66_C 21 SQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 100 (128)
T ss_dssp HHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHH
T ss_pred cccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhh
Confidence 457889999998876553322 138999999999999999999999999999999999999999999999999999887
Q ss_pred HH
Q 032408 103 LR 104 (141)
Q Consensus 103 l~ 104 (141)
+.
T Consensus 101 l~ 102 (128)
T 1f66_C 101 IK 102 (128)
T ss_dssp CC
T ss_pred hc
Confidence 74
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.15 E-value=3.2e-06 Score=65.08 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHH
Q 032408 24 EILRDRFRLSTISIAEAEANQ-IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAAT 102 (141)
Q Consensus 24 ~~LKaaL~y~V~rI~ee~~~~-~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~ 102 (141)
.--|+-|+|.|++|-+-.-.. ..-+|+..+...|+.+++.++.+|.+-+...|+|+||++|+++||.|+++.+..|..+
T Consensus 37 rS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~L 116 (149)
T 2f8n_K 37 RSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 116 (149)
T ss_dssp HHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHH
T ss_pred ccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHH
Confidence 345788999998876554332 2348999999999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 032408 103 LRS 105 (141)
Q Consensus 103 l~~ 105 (141)
+..
T Consensus 117 l~~ 119 (149)
T 2f8n_K 117 LGR 119 (149)
T ss_dssp TTT
T ss_pred hcC
Confidence 753
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.10 E-value=3.3e-06 Score=63.45 Aligned_cols=79 Identities=6% Similarity=0.044 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHHH
Q 032408 27 RDRFRLSTISIAEAEANQ-IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRS 105 (141)
Q Consensus 27 KaaL~y~V~rI~ee~~~~-~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~ 105 (141)
|+-|+|.|++|-+-.-.. ..-+|+..+...|+.+++.++.+|..-+...|+|+||++|+++||.|+++.+..|..++..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~~ 100 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGN 100 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTTT
T ss_pred cCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhcC
Confidence 567888888876655332 2348999999999999999999999999999999999999999999999999999887753
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.06 E-value=5.6e-06 Score=65.18 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHH
Q 032408 27 RDRFRLSTISIAEAEANQIG--MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLR 104 (141)
Q Consensus 27 KaaL~y~V~rI~ee~~~~~~--~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~ 104 (141)
|+-|+|.|++|-+-.-...+ .+|+..+...|+.+++.++.+|..-+...|+|+||++|+++|+.|+++.++.|..++.
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 55678888877665533323 4899999999999999999999999999999999999999999999999999987763
No 36
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.00 E-value=2.1e-05 Score=58.98 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|.|+++++.. ++.+|.+++..|..++.+.++.||.++..+|+|++|+||+..||..++|-
T Consensus 37 ~YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 37 IYIYTVLKQVHP--DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp HHHHHHHHHHCT--TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 567899998863 45789999999999999999999999999999999999999999999875
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.96 E-value=4.9e-06 Score=59.26 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=43.6
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHH
Q 032408 47 MEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERL 99 (141)
Q Consensus 47 ~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L 99 (141)
.+||.++...|+..++-++..|+..+..+|+|.||+||+.+||.++++.++.+
T Consensus 28 ~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l 80 (98)
T 1jfi_A 28 GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDP 80 (98)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchh
Confidence 48999999999999999999999999999999999999999999999987765
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.96 E-value=2.4e-05 Score=58.91 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|.|+++++.. ++.+|.+++..|..++.+.++.||.++..+|+|++|+||+..||..++|-
T Consensus 40 ~YIyKVLKQVhp--d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 40 IYVYKVLKQVHP--DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp HHHHHHHHHHCT--TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 458899998853 46799999999999999999999999999999999999999999999875
No 39
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.85 E-value=3.4e-05 Score=56.67 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERL 99 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L 99 (141)
|.||++.- +....||.++...|+..++-++..|+..+...|+..+|+||+.+||..++++++.+
T Consensus 47 IkrImK~d--~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~ 110 (119)
T 4g92_C 47 IKKVMKAD--PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMF 110 (119)
T ss_dssp HHHHHHTS--TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGG
T ss_pred HHHHHhhC--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchh
Confidence 55666532 34568999999999999999999999999999999999999999999999998765
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00011 Score=60.29 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred HHHHHHHHHhh-----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 34 TISIAEAEANQ-----IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 34 V~rI~ee~~~~-----~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|++++.+.. .+.++.+.++.+|-|.++.|+..+-.|....|-||+|-||.+.|+.|+.|-
T Consensus 17 FqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 17 FARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp HHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred HHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 34555555443 268999999999999999999999999999999999999999999999764
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.56 E-value=0.00031 Score=55.20 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 32 LSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 32 y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|.|++++... ++.+|.+++..|..++.+.++.|+.++..++.|++|+||+..||..++|.
T Consensus 7 ~yi~kvLkqv~p--~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP--DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 457888888853 46799999999999999999999999999999999999999999999985
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.13 E-value=0.0029 Score=43.64 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=49.1
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 45 IGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 45 ~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
.+..+.|++-..|.+++..|+.++...+-.+|+|-|=.||.+-||.|...||
T Consensus 20 p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 20 PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999999999999886
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.05 E-value=0.0004 Score=52.52 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCccchhhHHHHHhhcHHH
Q 032408 28 DRFRLSTISIAEAEAN-QIGMEISKPIIACISDLAFKYTEQLAKDLELFA-QHAGRKSVRMEDVILSAHRNERL 99 (141)
Q Consensus 28 aaL~y~V~rI~ee~~~-~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FA-kHAgRkTI~~eDV~Ll~Rrn~~L 99 (141)
..+++.++||-+=.-. +....||.++...++..++-++..|+..+..+| +..+|+||+.+||..++++++.+
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 4466766655322211 223579999999999999999999999999999 99999999999999999987543
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.25 E-value=0.3 Score=38.69 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAF----KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~----~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|++..+...++.++++++..|.++.+ +++.++...+..+|.-.|+.+|+.+||.-+...
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444444455678999999999999986 577889999999998999999999999988765
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.87 E-value=1.2 Score=34.71 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=42.5
Q ss_pred cCCccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 45 IGMEISKPIIACISDLAFK-------YTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 45 ~~~~vs~~~v~aL~Elv~~-------~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.++.++++++..|.++.+. .+..+.+-+..+|.-.||.+|+.+||.-++.
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4678999999999999884 5667888888899889999999999986653
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.18 E-value=1.3 Score=32.14 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAF---KYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~---~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
...|+.......|+.++++++..|.+.+- +.+.++...+..+|...|+ .|+.+||+-++.
T Consensus 179 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 179 KLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 34555555556688999999999988765 4556677777777766664 699999987653
No 47
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.69 E-value=2.8 Score=36.69 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHHHhh-cCCccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHH
Q 032408 35 ISIAEAEANQ-IGMEISKPIIACISDLAF-------------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLA 100 (141)
Q Consensus 35 ~rI~ee~~~~-~~~~vs~~~v~aL~Elv~-------------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~ 100 (141)
..+++..... ....++++++..|.+..+ +++.++.+-+..+|...+|..|+.+||.-+.++...+.
T Consensus 300 ~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~i~ 379 (604)
T 3k1j_A 300 QFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKPLE 379 (604)
T ss_dssp HHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCCHH
T ss_pred HHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhhhH
Confidence 3444444322 235799999999998764 56678889999999999999999999999997755554
Q ss_pred HHH-HHHHHH
Q 032408 101 ATL-RSFRND 109 (141)
Q Consensus 101 ~~l-~~~~~e 109 (141)
+.+ ..|+..
T Consensus 380 ~~~~e~~l~~ 389 (604)
T 3k1j_A 380 KQLADWYIER 389 (604)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 443 444443
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=89.59 E-value=1 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=39.6
Q ss_pred HHHHHHHHHh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032408 34 TISIAEAEAN-QIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRK 82 (141)
Q Consensus 34 V~rI~ee~~~-~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRk 82 (141)
|..|+.+... ..+.++.+.++.+|-|.++.|+..+-.|....|-||-|.
T Consensus 11 VREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 11 VKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 4445544432 125899999999999999999999999999999999664
No 49
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=88.54 E-value=0.59 Score=37.19 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+.+.+++.+...|+.++++++..|.+++..-...+...|+.++-.++..+|+.+||.-++-.
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 34445555566789999999999999988777777888888777666679999999766543
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.64 E-value=1.8 Score=30.46 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.++.......|..++++++..|.+.+......+..-++..+..+ .+|+.+||.-++.
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 44444444457789999999888776555555555555555555 6899999988764
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.21 E-value=2.4 Score=35.56 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLA----FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv----~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.|++..+...++.++++++..|..+. .+++..+..-+..+|.-.||..|+.+||.-+..-
T Consensus 373 ~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 373 QIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 34444444456789999988888876 3567788888888888889999999999998865
No 52
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=85.90 E-value=2.3 Score=29.49 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQ-LAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~-ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
.|.||+...-...+.++|++++..+.+++.-++.. +++=++ -|+--|-.+|+.+|+.=++
T Consensus 17 li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~-~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 17 LVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVR-QAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp HHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcccHHHHHHHH
Confidence 46677774444457899999999999999988865 444333 4444567789999987543
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.99 E-value=5 Score=31.42 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=40.4
Q ss_pred cCCccCHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 45 IGMEISKPIIACISDLAF-----------------------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 45 ~~~~vs~~~v~aL~Elv~-----------------------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.++.++++++..+.+++. +.+..+.+=+.++|.-.||..|+++||.-+++
T Consensus 223 ~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 223 NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 478899999998888763 44456777788889999999999999987664
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.17 E-value=0.73 Score=35.94 Aligned_cols=61 Identities=13% Similarity=-0.012 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----ccchhhHHHHHhh
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRK----SVRMEDVILSAHR 95 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRk----TI~~eDV~Ll~Rr 95 (141)
..++.......|+.++++++..|.++++.....+..-++..+..+||. .|+.+||.-++..
T Consensus 198 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 198 IDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 344445444568899999999999988755554444444444444543 8999999987764
No 55
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=83.90 E-value=1.2 Score=42.04 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHHHH
Q 032408 27 RDRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRSF 106 (141)
Q Consensus 27 KaaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~ 106 (141)
|+-|+|.|+||-.-.-....-+|+..+..-|+..++-.+.++.+=+-.+|+..++..|++.++.++++.+..|.+++..-
T Consensus 100 ~~~l~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~d 179 (1049)
T 3ksy_A 100 RNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQD 179 (1049)
T ss_dssp SSSCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC--
T ss_pred cCCccccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHHhhc
Confidence 45678999988765511224588877766666666655566776667788889999999999999999999988877443
No 56
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=83.28 E-value=4.8 Score=27.57 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQ-LAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~-ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
|.+|....=...+.+++++++..+.+++.-++.. +++-... |+--|-..|+.+|+.=++
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~-a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQ-AQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSEECHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCeecHHHHHHHH
Confidence 5566666544567899999999999999888854 5554433 333466789999987543
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.20 E-value=4.9 Score=31.26 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=43.4
Q ss_pred CCccCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 46 GMEISKPIIACISDLAF------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 46 ~~~vs~~~v~aL~Elv~------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+..++++++..+.+.++ +++.++...+..+|...|+.+|+.+||.-+...
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 56899999999999998 677788888888888889999999999887754
No 58
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.37 E-value=5.2 Score=34.05 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=47.5
Q ss_pred cCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc--CCCccchhhHHHHHhhcH--------HHHHHHHHHHHHhh
Q 032408 45 IGMEISKPIIACISDLAFKYT---EQLAKDLELFAQHA--GRKSVRMEDVILSAHRNE--------RLAATLRSFRNDLK 111 (141)
Q Consensus 45 ~~~~vs~~~v~aL~Elv~~~~---~~ia~DLe~FAkHA--gRkTI~~eDV~Ll~Rrn~--------~L~~~l~~~~~el~ 111 (141)
.++.++++++..|.+.+-.-+ .++..-+..+|... |+.+|+.+||.-++.+.. ...+.+..+.+.+.
T Consensus 188 ~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksir 267 (447)
T 3pvs_A 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVR 267 (447)
T ss_dssp SSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHh
Confidence 457899999999999865444 44555555554422 567899999999988753 45566666666555
Q ss_pred ccC
Q 032408 112 AKE 114 (141)
Q Consensus 112 ~~~ 114 (141)
+.+
T Consensus 268 gsd 270 (447)
T 3pvs_A 268 GSA 270 (447)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 59
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.27 E-value=13 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=38.3
Q ss_pred cCCccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhcCCCccchhhHHHH
Q 032408 45 IGMEISKPIIACISDLAF-------------KYTEQLAKDLELFAQHAGRKSVRMEDVILS 92 (141)
Q Consensus 45 ~~~~vs~~~v~aL~Elv~-------------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll 92 (141)
.++.++++++..+.+++. +....+..-+.++|...||..|+++||.++
T Consensus 222 ~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 222 GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 367788888888877773 344567788899999999999999999943
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.54 E-value=8.8 Score=30.61 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLA---FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv---~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.+..|+++.+...++.++++++..|.... -+.+..+.+-+..||.-.|+..|+.++|.-+...
T Consensus 184 ~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 184 ELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 45666666666678899999988887764 3456677777788888888889999999988765
No 61
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=77.07 E-value=2.5 Score=28.85 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032408 28 DRFRLSTISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHA 79 (141)
Q Consensus 28 aaL~y~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHA 79 (141)
+.|+--+..|+.+.|.. .++++++..++-.+......+...|...|+|-
T Consensus 6 ~~Lqkri~~I~~k~gl~---~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 6 APLQRRILEIGKKHGIT---ELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHHHHHHHTTTCC---EECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcCCC---cCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555444 69999999999999999999999999999984
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=75.06 E-value=8.7 Score=26.98 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 37 IAEAEANQIGMEISKPIIACISDLAFKYT---EQLAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 37 I~ee~~~~~~~~vs~~~v~aL~Elv~~~~---~~ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
++.......++.++++++..|.+.+.... .+++..+. .. ++.+|+.+||.-++
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~---~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 193 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI---AS-GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH---TT-TTSSBCHHHHHHHS
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---hc-cCceecHHHHHHHh
Confidence 33333344577899999888877764333 34444443 22 23489999987654
No 63
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.16 E-value=2.9 Score=32.56 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHhhcCCccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 39 EAEANQIGMEISK-PIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 39 ee~~~~~~~~vs~-~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
...+...|+.+++ +++..|.+.+..-+..+..-|+.++ +...|+.++|..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 182 TEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC---------
T ss_pred HHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHHHHhCC
Confidence 3344445788988 9999998887666666777777777 3456999999887655
No 64
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=71.93 E-value=10 Score=28.96 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHHHHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRSFRN 108 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~~~ 108 (141)
+.++.+.++ |..|.+.-+..++++|.+.+.++..=++.-|+--||.+|.+-|+=+ ..+|++.|+.|.+
T Consensus 8 ~e~lFR~aa---~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI----TkGlqesi~~F~~ 75 (148)
T 1wwi_A 8 FERLFRQAA---GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI----AKGLQETLQEFRR 75 (148)
T ss_dssp HHHHHHHHH---CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC----CHHHHHHHHHHHT
T ss_pred HHHHHHHHh---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc----cHHHHHHHHHHHH
Confidence 356666664 7789999999999999999999999999999999999999999754 4578888777743
No 65
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.03 E-value=32 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=40.4
Q ss_pred CCccCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 46 GMEISKPIIACISDLAF------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 46 ~~~vs~~~v~aL~Elv~------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
...++++++..+.+++. +++.+++..+..+|...|+..|+.+||.-+...
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 35789999999999887 345678888888887778999999999877654
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.51 E-value=21 Score=27.80 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCccCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 46 GMEISKPIIACISDLAF------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 46 ~~~vs~~~v~aL~Elv~------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
+..++++++..+.+++. +++.++...+..+|. |..+|+.+||.-+....
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 45799999999999887 245567777777776 77899999998877553
No 67
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=67.05 E-value=22 Score=25.51 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCccchh
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYT---EQLAKDLELFAQHAGRKSVRME 87 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~---~~ia~DLe~FAkHAgRkTI~~e 87 (141)
..+|.++. ...|+.++++++..+.|+...|- ..+....-+|+-|-+---.+.+
T Consensus 28 ae~L~eEf-defGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~e 83 (101)
T 2keb_A 28 AQQLAEEL-QIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE 83 (101)
T ss_dssp HHHHHHHH-HHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHH
T ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHH
Confidence 34455555 56799999999999999998885 5799999999988664445443
No 68
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.06 E-value=12 Score=28.66 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLA---FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv---~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.++.......++.++++++..|.... -+.+.++..-+..+|...+...|+.+|+.-+..
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 175 QGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34444445557889999999988874 234455565555566666788999999987654
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=64.57 E-value=45 Score=25.84 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=40.5
Q ss_pred CccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 47 MEISKPIIACISDLA------------FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 47 ~~vs~~~v~aL~Elv------------~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..++++++..+.+.+ -+++.+++..+..+|...|+.+|+.+||.-+...
T Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 213 GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 479999999999999 3556788888888888889999999999876543
No 70
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=63.15 E-value=9 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 60 LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 60 lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
++-.-+..++.++..+|-..++..|+.+|+.-++++
T Consensus 37 ~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 333446789999999999999999999999888765
No 71
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=62.61 E-value=12 Score=29.11 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHHHHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRSFRN 108 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~~~ 108 (141)
+.++.+.++ |+.|.+.-+..++++|.+.+.++..=++.=|+--||.+|.+-|+=+ ..+|++.|+.|.+
T Consensus 32 ferlFR~aa---gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI----TKGlqEsi~~Fr~ 99 (171)
T 1r4v_A 32 LDHYFRTEL---DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI----TKALEEHIKNFQK 99 (171)
T ss_dssp HHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC----CHHHHHHHHHHHT
T ss_pred HHHHHHHHh---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc----cHHHHHHHHHHHh
Confidence 355666664 7799999999999999999999999999999999999999999754 4578888877743
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.05 E-value=19 Score=28.40 Aligned_cols=61 Identities=5% Similarity=-0.036 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCccchhhHHHHHhhc
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAG---RKSVRMEDVILSAHRN 96 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAg---RkTI~~eDV~Ll~Rrn 96 (141)
.++...+...++.++++++..+.++.......+..-|+..+..++ +..|+.++|.-++...
T Consensus 176 ~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~ 239 (340)
T 1sxj_C 176 RRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP 239 (340)
T ss_dssp HHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCC
Confidence 344444444578899999999988876655555555555555554 3579999998777654
No 73
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=59.51 E-value=28 Score=26.95 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAF---KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~---~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
..|+.......++.++++++..|...+. +++.++..-+..+|...++..|+.+|+.-+...
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 4555555556678899999999988532 345567777777888888899999999877654
No 74
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.36 E-value=16 Score=27.63 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
..++...+...|+.++++++..|.+.+......+..-|+.++.. ...|+.+||.-++...
T Consensus 167 ~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 167 KKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATA 226 (319)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCC
Confidence 34445555566889999999999877665555555555555543 3479999998777653
No 75
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=58.32 E-value=9.7 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh-cHHHH
Q 032408 61 AFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR-NERLA 100 (141)
Q Consensus 61 v~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr-n~~L~ 100 (141)
+-.-+..+++++...|-..++..|+.+|+.-+.++ .|++.
T Consensus 36 SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 36 SGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 33445679999999998888999999999988766 46555
No 76
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=58.07 E-value=42 Score=23.02 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCccchhhHHHHHhhc
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAG-RKSVRMEDVILSAHRN 96 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAg-RkTI~~eDV~Ll~Rrn 96 (141)
.|.|++.... |..+++.++.+|.-+..-++.+|-..+-.....-+ +.-|.+.-|.-+.||-
T Consensus 21 ~vKrl~~~~~---~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 21 AIKRLIQSIT---GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 4566776664 56899999999999999999887777777665554 5578888888887764
No 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=57.87 E-value=12 Score=24.23 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 60 LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 60 lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
++-.-+..++.++..+|-+.++..|+.+|+.-++++-
T Consensus 32 ~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 32 LSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3344456788999999999999999999999888773
No 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.78 E-value=19 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.++...+...|+.++++++..|.+.+..-...+..-++..+..++ .|+.+||.-+...
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~--~i~~~~v~~~~~~ 233 (327)
T 1iqp_A 176 KRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK--KITDENVFMVASR 233 (327)
T ss_dssp HHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--EECHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHCC
Confidence 444445455688899999999988775544444445555444333 7888888776654
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=56.97 E-value=19 Score=28.01 Aligned_cols=56 Identities=11% Similarity=-0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAFKYT---EQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~---~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
..++.......|+.++++++..|.+.+.... .++...+..| + ..+|+.+||.-++.
T Consensus 184 ~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~---~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS---G-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH---T-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh---c-CCcccHHHHHHHhC
Confidence 3444444445578899999988888754433 3444444433 3 35799999876643
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.78 E-value=8.4 Score=33.96 Aligned_cols=49 Identities=22% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCccCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 46 GMEISKPIIACISDLA------------------FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 46 ~~~vs~~~v~aL~Elv------------------~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
...+++++...|.++. -+++..+.+-++++|+-.+|.+|+.+||.-+++
T Consensus 519 ~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 519 TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 3467777777777663 234668888899999999999999999999885
No 81
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=51.62 E-value=20 Score=24.55 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=40.1
Q ss_pred HHhhcCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCccchhhH
Q 032408 41 EANQIGMEISKPIIACISDLAFKYT---EQLAKDLELFAQHAGRKSVRMEDV 89 (141)
Q Consensus 41 ~~~~~~~~vs~~~v~aL~Elv~~~~---~~ia~DLe~FAkHAgRkTI~~eDV 89 (141)
+....|+.++.+++..|.|+.-.|- +.+..++.+|+---|...++.+=+
T Consensus 11 el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L 62 (78)
T 4e2i_2 11 ELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEIL 62 (78)
T ss_dssp HHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTT
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 3367899999999999999988775 679999999985558888877644
No 82
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=50.97 E-value=19 Score=23.70 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 54 IACISDLAFKY----TEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 54 v~aL~Elv~~~----~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+..|.+.+..| +..++.++..+|-+.++..|+.+|+.-++++
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45555555544 5689999999999999999999999988865
No 83
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.90 E-value=41 Score=25.31 Aligned_cols=59 Identities=10% Similarity=-0.069 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
.++...+...|+.++++++..|.+.+......+..-|+..+... ..|+.+||.-++...
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVDSP 231 (323)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHCCC
Confidence 34444444457889999999988887544444444444444222 469999998877654
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=48.71 E-value=44 Score=27.92 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhc
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAF---KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRN 96 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~---~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn 96 (141)
..|+...+...++.++++++..|...+. +.+..+..-+..||...|+ .|+.+++.-+++..
T Consensus 269 ~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 269 KSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4566666556688999999988887753 4556677778888877776 69999999888764
No 85
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.46 E-value=86 Score=27.60 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHHhhcCCccCHHHHHHHHHHHHHHH---------HHHHHHHHHHHhh----cCCCccchhhHHHHHhh
Q 032408 38 AEAEANQIGMEISKPIIACISDLAFKYT---------EQLAKDLELFAQH----AGRKSVRMEDVILSAHR 95 (141)
Q Consensus 38 ~ee~~~~~~~~vs~~~v~aL~Elv~~~~---------~~ia~DLe~FAkH----AgRkTI~~eDV~Ll~Rr 95 (141)
++......++.++++++..+..+...|+ .++...+...+.. .++.+|+.+||.-++.+
T Consensus 362 ~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~ 432 (758)
T 1r6b_X 362 KPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH
Confidence 3333345688999999999999999874 3444444444444 35778999999877654
No 86
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.52 E-value=20 Score=30.47 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 41 EANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 41 ~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.+...|+.++++++..|.+....-+..+..-|+..+. ++++|+.+||.-++.
T Consensus 221 i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 221 IAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIST--TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHH--HSSCCCTTHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 3334477899999999988775444455555555543 667899999976654
No 87
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=44.52 E-value=25 Score=24.66 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc------CCCccchhhHHHH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLAFKYTEQ-LAKDLELFAQHA------GRKSVRMEDVILS 92 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~-ia~DLe~FAkHA------gRkTI~~eDV~Ll 92 (141)
.+.||+...-...+.++|++++..+.+.+.-|+.. +++-.+.=..-. +..+++.+|+.=+
T Consensus 6 llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 6 ALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72 (88)
T ss_dssp HHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHH
T ss_pred HHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHH
Confidence 46677775555667999999999998888877753 554433221111 1246777777543
No 88
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=44.30 E-value=90 Score=27.82 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 68 LAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 68 ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
+.+=++++|+-.||..|+++||+.+++
T Consensus 455 LiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 455 VERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 344456889999999999999999985
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.41 E-value=19 Score=28.05 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCcc-chhhHHHHH
Q 032408 34 TISIAEAEANQIGMEISKPIIACISDLAFKYTEQLAKDLELFAQH-------AGRKSV-RMEDVILSA 93 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~~ia~DLe~FAkH-------AgRkTI-~~eDV~Ll~ 93 (141)
...|++......++.++++++..|...+ ..+..+-.-++.++.+ .+...| +.++|.-++
T Consensus 171 ~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~ 237 (324)
T 1l8q_A 171 RFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFV 237 (324)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHH
Confidence 3456666666678899999999988877 4444444444444444 223345 555555443
No 90
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=43.34 E-value=27 Score=23.07 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 62 FKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 62 ~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
-.-+..+++++..+|-..++..|+.+|+.-+.++
T Consensus 47 GADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 47 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344679999999998888999999999887765
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=43.28 E-value=30 Score=25.77 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 61 AFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 61 v~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
.-+.+..+...+..+|...++.+|+.+|+.-+.++
T Consensus 217 ~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34466788889999999999999999999887754
No 92
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=41.64 E-value=28 Score=22.77 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 48 EISKPIIACISDLAFKYT-EQLAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 48 ~vs~~~v~aL~Elv~~~~-~~ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
.-|+++-..|..+=+ ++ ..+=+-.+.||+..|...|+.+.+.-+-
T Consensus 4 ~Wt~EAe~~LkkIP~-FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK 49 (62)
T 2l09_A 4 RWTSEAKTKLKNIPF-FARSQAKARIEQLARQAEQDIVTPELVEQAR 49 (62)
T ss_dssp EECHHHHHHHHTSCG-GGHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 345555555544321 12 2455677889999999999988776553
No 93
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=41.41 E-value=40 Score=24.76 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 37 IAEAEANQIGMEISKPI-IACISDLAF----KYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 37 I~ee~~~~~~~~vs~~~-v~aL~Elv~----~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
|++......+...+.++ ...|...+. ..+..+...+..+|...++.+|+.+|+.-+.++
T Consensus 185 il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 185 IFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44444444445555543 344544332 345567777777777788899999999877654
No 94
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=39.80 E-value=30 Score=22.66 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCccchhhHHHH
Q 032408 48 EISKPIIACISDLAFKYT-EQLAKDLELFAQHAGRKSVRMEDVILS 92 (141)
Q Consensus 48 ~vs~~~v~aL~Elv~~~~-~~ia~DLe~FAkHAgRkTI~~eDV~Ll 92 (141)
.-|+++-..|..+=+ ++ ..+=+-.+.||+..|...|+.+.+.-+
T Consensus 5 ~Wt~EAe~~LkkIP~-FVR~kvrr~tE~~Are~G~~~IT~ev~~~A 49 (63)
T 2kru_A 5 SWTAEAEKMLGKVPF-FVRKKVRKNTDNYAREIGEPVVTADVFRKA 49 (63)
T ss_dssp EECHHHHHHHTTSCH-HHHHHHHHHHHHHHHHHTCSEECHHHHHHH
T ss_pred CCCHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 345555555544322 22 345567788999999999998877654
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=37.81 E-value=1.4e+02 Score=23.23 Aligned_cols=47 Identities=19% Similarity=0.030 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcCCCccchhhHHHHHh
Q 032408 48 EISKPIIACISDLAF---------KYTEQLAKDLELFAQHAGRKSVRMEDVILSAH 94 (141)
Q Consensus 48 ~vs~~~v~aL~Elv~---------~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~R 94 (141)
.++++++..+.+.+. .++..++..+..+|...++..|+.++|..+..
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 588999988888887 36678888888888888889999999876554
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=36.03 E-value=52 Score=24.39 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHh-hcCCCccchhhHHHHHhhcHHHHHHHHHHHHHhhccC
Q 032408 66 EQLAKDLELFAQ-HAGRKSVRMEDVILSAHRNERLAATLRSFRNDLKAKE 114 (141)
Q Consensus 66 ~~ia~DLe~FAk-HAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~~~el~~~~ 114 (141)
..+...+...|+ -.|...|+++.+.|++=+.+ +...+..+..++..-+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~-~~~~~~~~~~~l~~i~ 152 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA-DRYLSFKLISLFEGIN 152 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH-HHHSCHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh-hhhHHHHhhHHHHcCC
Confidence 456677788889 89999999999999998887 6656666666665433
No 97
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=35.90 E-value=1e+02 Score=22.86 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHH----hhcCCCccchhhHHHHHhhcHHHHHHHHHHHHHhh
Q 032408 62 FKYTEQLAKDLELFA----QHAGRKSVRMEDVILSAHRNERLAATLRSFRNDLK 111 (141)
Q Consensus 62 ~~~~~~ia~DLe~FA----kHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~~~el~ 111 (141)
.++..++--|+..|. .-.|+..-+.+|+..++..+..+++.|-....+|.
T Consensus 63 ek~~rn~rA~~vlf~~vL~DE~g~rvFsd~D~~~v~~~ygpvh~RLl~~Al~L~ 116 (130)
T 2ob9_A 63 EKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLI 116 (130)
T ss_dssp HHHHHHHHHHHHHHHHHEECTTSCBSSCGGGHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHhccccHHHHHHHHhcCCCcccCCHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 445557888888888 56799999999999999999999999988888883
No 98
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.69 E-value=52 Score=25.43 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhH
Q 032408 34 TISIAEAEANQIGMEIS-KPIIACISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDV 89 (141)
Q Consensus 34 V~rI~ee~~~~~~~~vs-~~~v~aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV 89 (141)
+..+++..+...|+.++ ++++..|.+.+..-...+..-|+..+..++ ..|+.+++
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~~-~~i~~~~~ 253 (354)
T 1sxj_E 198 ISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNE-LALKSSSP 253 (354)
T ss_dssp HHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTT-TEECSSCC
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-CCcCcCcC
Confidence 33444444445578899 999999988876555555555555554443 35666554
No 99
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=33.66 E-value=53 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 61 AFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 61 v~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+-..+..+...+..+|-..++.+|+.+|+.-++++
T Consensus 223 ~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 223 VGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 34456778889999998999999999999887754
No 100
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=32.61 E-value=1.1e+02 Score=20.23 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhhcH-HHHHHHHHHH
Q 032408 56 CISDLAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHRNE-RLAATLRSFR 107 (141)
Q Consensus 56 aL~Elv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~-~L~~~l~~~~ 107 (141)
-+....+..+..++.|-..||+|=| ++..||...-..|| ++.+...+.+
T Consensus 12 ~l~~~~~~ia~~lg~~Wk~Lar~Lg---~~~~~I~~I~~~~~~d~~eq~~~mL 61 (99)
T 1fad_A 12 YLQVAFDIVCDNVGRDWKRLARELK---VSEAKMDGIEEKYPRSLSERVRESL 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3555666666788899999999987 77778877776665 4444444443
No 101
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=31.28 E-value=47 Score=22.69 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCccCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 032408 46 GMEISKPIIACISDLAFKYTEQL-AKDLELFA 76 (141)
Q Consensus 46 ~~~vs~~~v~aL~Elv~~~~~~i-a~DLe~FA 76 (141)
||.++.....+|.+|+++|+.-+ ..|.+.|+
T Consensus 1 ~m~~~~~d~~~I~~l~~rya~~lD~~d~~~~~ 32 (144)
T 2rgq_A 1 GMELTALDKLEIMELAARFEMSLDKEDVENYL 32 (144)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 68899999999999999999754 34555554
No 102
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.22 E-value=65 Score=28.19 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 52 PIIACISD-LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 52 ~~v~aL~E-lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+.++.+++ ++-..+..++.++..+|-..+|+.|+.+|+.-++.+
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 33444332 444566789999999999999999999999877654
No 103
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.76 E-value=44 Score=28.63 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 60 LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 60 lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
++-..+..++.++..+|-..+|..|+.+|+..++++
T Consensus 353 ~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 353 CSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 344556789999999998889999999999988765
No 104
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=29.28 E-value=99 Score=21.49 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHhhcHH--HHHHHHHH
Q 032408 66 EQLAKDLELFAQHAGRKSVRMEDVILSAHRNER--LAATLRSF 106 (141)
Q Consensus 66 ~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~--L~~~l~~~ 106 (141)
..+...+..+|+-.|...|+++.+.|++=..+. ....|..+
T Consensus 87 ~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~ 129 (145)
T 3fes_A 87 KQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYA 129 (145)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHc
Confidence 456677778888899999999999999866542 44555544
No 105
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.81 E-value=46 Score=28.93 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 60 LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 60 lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
++-..+..++.++..+|-..+|..|+.+|+.-+.++
T Consensus 387 fSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 387 LSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 344556789999999999999999999999888754
No 106
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=28.26 E-value=1.3e+02 Score=20.77 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCccchhhHHHHHhhcH--HHHHHHHHH
Q 032408 66 EQLAKDLELFAQHAGRKSVRMEDVILSAHRNE--RLAATLRSF 106 (141)
Q Consensus 66 ~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~--~L~~~l~~~ 106 (141)
..+...+..+|+..|...|+++.+.|++=+.+ .....|+.+
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~ 129 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKL 129 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHc
Confidence 44556677788889999999999999986544 455555544
No 107
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.16 E-value=69 Score=23.70 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=33.1
Q ss_pred CccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 47 MEISKPI-IACISDLAF----KYTEQLAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 47 ~~vs~~~-v~aL~Elv~----~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
..+++++ +..|.+.+. ..+..+...+..+|...++.+|+.+|+.-+.
T Consensus 202 ~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 202 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3455444 445554443 4566788888888888889999999997654
No 108
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.08 E-value=77 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 60 LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 60 lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
++-..+..++.++..+|-..+|..|+.+|+.-++++
T Consensus 386 ~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 386 FNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344556789999999999999999999999888764
No 109
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=24.71 E-value=2.7e+02 Score=22.22 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc------------CCCccchhhHHHHHhh
Q 032408 35 ISIAEAEANQIGMEISKPIIACISDLAFKYTE----QLAKDLELFAQHA------------GRKSVRMEDVILSAHR 95 (141)
Q Consensus 35 ~rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~~----~ia~DLe~FAkHA------------gRkTI~~eDV~Ll~Rr 95 (141)
..|++......+..++++.+..|...+..|.. .++..+...+-.. +...|+.+|+.-++++
T Consensus 288 ~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 288 LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 34555555556778999888888877655432 3333333332221 3457999999888765
No 110
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.39 E-value=60 Score=27.83 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 49 ISKPIIACISD-LAFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 49 vs~~~v~aL~E-lv~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+.-+.++..++ ++-..+..++.++..+|-..||..|+.+|+.-++.+
T Consensus 374 vdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 374 INWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp CCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 33333433332 444566789999999998889999999998777654
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=24.32 E-value=2.3e+02 Score=21.25 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHH
Q 032408 33 STISIAEAEANQIGMEISKPIIACISDLA 61 (141)
Q Consensus 33 ~V~rI~ee~~~~~~~~vs~~~v~aL~Elv 61 (141)
.+..|++......++.++++++..|.+.+
T Consensus 208 ~~~~il~~~l~~~~~~~~~~~~~~l~~~~ 236 (309)
T 3syl_A 208 ELFEIAGHMLDDQNYQMTPEAETALRAYI 236 (309)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 55677777777778899999999988874
No 112
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=24.05 E-value=1.4e+02 Score=22.16 Aligned_cols=42 Identities=7% Similarity=0.232 Sum_probs=25.2
Q ss_pred ccCHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCccchhhHHHH
Q 032408 48 EISKPIIACISDLAF----KYTEQLAKDLELFAQHAGRKSVRMEDVILS 92 (141)
Q Consensus 48 ~vs~~~v~aL~Elv~----~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll 92 (141)
.++++++..|....| +.+.++...+.. .++...|+.+|+..-
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~---~~~~~~i~~~~l~~~ 253 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVY---RHGTSDYPLDDIIID 253 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH---HHCCSSSCBCCCCSC
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH---hCCCCcCcHHHcchh
Confidence 688888888876543 233344444333 344567888887443
No 113
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=23.32 E-value=1.3e+02 Score=21.89 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHHHH
Q 032408 70 KDLELFAQHAGRKSVRMEDVILSAHRNERLAATLRSF 106 (141)
Q Consensus 70 ~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~ 106 (141)
..+-..+.-.|-..|+.++..-+++++|.+...++.|
T Consensus 189 ~~~f~~~D~d~dG~Is~~EF~~~~~~~~~~~~~~~~~ 225 (229)
T 3dd4_A 189 ETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQLF 225 (229)
T ss_dssp HHHHHHHCSSCSSBCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEeHHHHHHHHHhCHHHHHHHHhc
Confidence 3333333334556899999999999999999998866
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.26 E-value=1.9e+02 Score=21.65 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc------------CCCccchhhHHHHHhh
Q 032408 36 SIAEAEANQIGMEISKPIIACISDLAFKYT----EQLAKDLELFAQHA------------GRKSVRMEDVILSAHR 95 (141)
Q Consensus 36 rI~ee~~~~~~~~vs~~~v~aL~Elv~~~~----~~ia~DLe~FAkHA------------gRkTI~~eDV~Ll~Rr 95 (141)
.|++......+..++++++..|...+..+. ..+++.+...|-.. ....|+.+|+.-++++
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 344555455566788888888877665432 23444443333322 2357999999988765
No 115
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.14 E-value=92 Score=23.55 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=32.1
Q ss_pred CccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHhhcCCCccchhhHHHHH
Q 032408 47 MEISKPI-IACISDLAF----KYTEQLAKDLELFAQHAGRKSVRMEDVILSA 93 (141)
Q Consensus 47 ~~vs~~~-v~aL~Elv~----~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~ 93 (141)
..+++++ +..|...+. ..+..+...+..+|...++.+|+.+|+.-+.
T Consensus 226 ~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 226 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 3455544 444444333 4556788888888888889999999997654
No 116
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=21.78 E-value=2.1e+02 Score=19.90 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=22.2
Q ss_pred HHHHHHHH-hhcCCCccchhhHHHHHhhcHHHHHHHHHH
Q 032408 69 AKDLELFA-QHAGRKSVRMEDVILSAHRNERLAATLRSF 106 (141)
Q Consensus 69 a~DLe~FA-kHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~ 106 (141)
..-|..++ +|++| -|+++...++. ..|...|.+.
T Consensus 86 ~~~l~~L~~~H~~~-gV~p~~f~~~~---~~Ll~~l~~~ 120 (153)
T 2bk9_A 86 DEIWTKIAVSHIPR-TVSKESYNQLK---GVILDVLTAA 120 (153)
T ss_dssp HHHHHHHHHHHGGG-TCCHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHH---HHHHHHHHHH
Confidence 33344444 89998 89999988775 3455555544
No 117
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=21.34 E-value=2.5e+02 Score=22.29 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCccchhhHHHHHhhcHHHHHHHHHHHHHh
Q 032408 50 SKPIIACISDLAFKYTEQLAKDLELFA-QHAGRKSVRMEDVILSAHRNERLAATLRSFRNDL 110 (141)
Q Consensus 50 s~~~v~aL~Elv~~~~~~ia~DLe~FA-kHAgRkTI~~eDV~Ll~Rrn~~L~~~l~~~~~el 110 (141)
+......=.+-+..|+..+=.-|+.|| +|.+- +|+||......++++..+
T Consensus 21 g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~e-----------I~~dp~fR~~F~~mc~si 71 (233)
T 1u5t_A 21 NKTILEKQSVELRDQLMVFQERLVEFAKKHNSE-----------LQASPEFRSKFMHMCSSI 71 (233)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-----------TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------cccCHHHHHHHHHHHHHc
Confidence 333334444556667778888899999 66542 468888888888887765
No 118
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=20.53 E-value=1.7e+02 Score=19.81 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhHHHHHhhcHHHHHHHH
Q 032408 65 TEQLAKDLELFAQHAGRKSVRMEDVILSAHRNERLAATLR 104 (141)
Q Consensus 65 ~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rrn~~L~~~l~ 104 (141)
+..+...+..+|...|...|+++-+.+++=.++.....|+
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4455567778888889999999999999877776544444
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1e+02 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhh
Q 032408 61 AFKYTEQLAKDLELFAQHAGRKSVRMEDVILSAHR 95 (141)
Q Consensus 61 v~~~~~~ia~DLe~FAkHAgRkTI~~eDV~Ll~Rr 95 (141)
+-..+..+++++..+|-..+|..|+.+|+.-+..+
T Consensus 379 sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 34456789999999998889999999999877643
Done!