Query 032409
Match_columns 141
No_of_seqs 120 out of 128
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 13:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12165 DUF3594: Domain of un 100.0 1.3E-38 2.9E-43 246.0 2.1 61 1-61 76-137 (137)
2 KOG1632 Uncharacterized PHD Zn 99.3 5.8E-13 1.2E-17 113.3 0.8 77 1-77 117-201 (345)
3 COG1993 PII-like signaling pro 54.0 7.9 0.00017 29.7 1.5 28 29-56 47-77 (109)
4 PF13111 DUF3962: Protein of u 42.0 13 0.00028 31.6 1.1 33 4-45 24-56 (216)
5 PRK03598 putative efflux pump 36.6 10 0.00023 30.9 -0.3 26 1-26 1-26 (331)
6 cd05036 PTKc_ALK_LTK Catalytic 34.2 47 0.001 25.0 2.9 33 12-44 200-235 (277)
7 cd05112 PTKc_Itk Catalytic dom 33.1 49 0.0011 24.2 2.8 32 12-43 180-214 (256)
8 cd01182 INT_REC_C DNA breaking 31.6 38 0.00083 22.2 1.9 17 13-29 15-31 (162)
9 smart00464 LON Found in ATP-de 30.7 29 0.00062 23.4 1.2 24 20-43 57-80 (92)
10 PTZ00211 ribonucleoside-diphos 29.6 34 0.00075 28.9 1.7 37 9-50 110-146 (330)
11 cd05060 PTKc_Syk_like Catalyti 28.6 70 0.0015 23.6 3.0 33 12-44 177-212 (257)
12 KOG1256 Long-chain acyl-CoA sy 26.9 39 0.00084 32.8 1.7 40 11-54 316-356 (691)
13 PF04651 Pox_A12: Poxvirus A12 26.4 1.4E+02 0.0031 25.0 4.7 22 116-137 106-128 (189)
14 COG1824 Permease, similar to c 23.2 54 0.0012 27.4 1.7 17 16-35 160-176 (203)
15 PF08040 NADH_oxidored: MNLL s 22.2 70 0.0015 22.4 1.9 36 8-46 3-41 (59)
16 KOG1567 Ribonucleotide reducta 21.5 63 0.0014 29.2 1.9 35 11-50 125-159 (344)
17 PF12738 PTCB-BRCT: twin BRCT 21.2 51 0.0011 20.6 1.0 21 30-50 7-27 (63)
18 cd05116 PTKc_Syk Catalytic dom 21.0 1.2E+02 0.0025 22.5 2.9 32 13-44 178-212 (257)
19 PF03241 HpaB: 4-hydroxyphenyl 20.6 45 0.00098 26.6 0.8 23 24-46 137-159 (205)
No 1
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=100.00 E-value=1.3e-38 Score=245.96 Aligned_cols=61 Identities=87% Similarity=1.388 Sum_probs=58.3
Q ss_pred CcccchhhhhhhhcchHHHHHHHHhhccccCCccchhHHHHHhhcccceeeeeccCCC-CCC
Q 032409 1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-QPK 61 (141)
Q Consensus 1 M~rkDWLSLVAVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~Evvtg~~K-q~K 61 (141)
|+|+||||||||||||||||||||||||||||+++|+|||+|||+||||||+|+|..| |+|
T Consensus 76 M~r~dWLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~~~~q~k 137 (137)
T PF12165_consen 76 MQRKDWLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGRAKKQSK 137 (137)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhccccccCC
Confidence 8999999999999999999999999999999999999999999999999999999865 654
No 2
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=99.29 E-value=5.8e-13 Score=113.30 Aligned_cols=77 Identities=48% Similarity=0.584 Sum_probs=66.7
Q ss_pred CcccchhhhhhhhcchHHHHHHHHhhccc-----cCCccchhHHHHHhhcccceeeeeccCCC---CCCCCCCCCCCCCC
Q 032409 1 MQEKDWLSLVAVHSDSWLLAVAFYFGARF-----GFGKNERKKLFQMINDLPTIFEVVTGNAK---QPKDQSANHNSSKS 72 (141)
Q Consensus 1 M~rkDWLSLVAVHSDsWLlsVAFyfgAr~-----GFd~~~RkrLF~mIN~lPTv~Evvtg~~K---q~Keks~~~n~sKs 72 (141)
|+++|||+++++|+|+|+++++||||+++ ++.+.+|+|+|.++|++||++|+++|.++ +.|.++.+++++++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~~~ 196 (345)
T KOG1632|consen 117 MSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGSKS 196 (345)
T ss_pred hhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhccccccccccccccccccccccee
Confidence 67899999999999999999999999998 89999999999999999999999999765 45555655556666
Q ss_pred CCCCC
Q 032409 73 KSSGK 77 (141)
Q Consensus 73 ksssK 77 (141)
+++.+
T Consensus 197 ~~~~~ 201 (345)
T KOG1632|consen 197 KTRKK 201 (345)
T ss_pred cccCc
Confidence 66555
No 3
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=54.00 E-value=7.9 Score=29.72 Aligned_cols=28 Identities=43% Similarity=0.805 Sum_probs=22.6
Q ss_pred ccCCccc---hhHHHHHhhcccceeeeeccC
Q 032409 29 FGFGKNE---RKKLFQMINDLPTIFEVVTGN 56 (141)
Q Consensus 29 ~GFd~~~---RkrLF~mIN~lPTv~Evvtg~ 56 (141)
.||.+.. .-++|.+-+|||.|.|+|-..
T Consensus 47 ~GfG~~~~~h~~~if~Ls~~LPVviEvVD~e 77 (109)
T COG1993 47 AGFGKDGKIHGSKIFRLSTDLPVVVEVVDEE 77 (109)
T ss_pred eccCCCCcccccchhhccCCCCEEEEEeCCH
Confidence 4666655 568999999999999999753
No 4
>PF13111 DUF3962: Protein of unknown function (DUF3962)
Probab=42.00 E-value=13 Score=31.60 Aligned_cols=33 Identities=30% Similarity=0.793 Sum_probs=25.7
Q ss_pred cchhhhhhhhcchHHHHHHHHhhccccCCccchhHHHHHhhc
Q 032409 4 KDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMIND 45 (141)
Q Consensus 4 kDWLSLVAVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~ 45 (141)
.||+.||-.|-|-|++-+-+ .+| +.||+.|.-|
T Consensus 24 ~~W~~ll~~~~~~~~l~~Kl---~~l------~erL~~mFsd 56 (216)
T PF13111_consen 24 IEWLDLLEIHYKTFLLTSKL---KRL------NERLYDMFSD 56 (216)
T ss_pred HHHHHHHHHhccccccHHHH---HHH------HHHHHHHHHH
Confidence 58999999999999998765 233 6778877544
No 5
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=36.59 E-value=10 Score=30.90 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=17.2
Q ss_pred CcccchhhhhhhhcchHHHHHHHHhh
Q 032409 1 MQEKDWLSLVAVHSDSWLLAVAFYFG 26 (141)
Q Consensus 1 M~rkDWLSLVAVHSDsWLlsVAFyfg 26 (141)
|.+++||.|.++-+=.-+..+.+.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (331)
T PRK03598 1 MKKKVVIGLAVVVLAAAVAGGWWWYQ 26 (331)
T ss_pred CCceEEEEhHHHHHHHHHHHheeEee
Confidence 88999999999866443333333444
No 6
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=34.16 E-value=47 Score=24.99 Aligned_cols=33 Identities=9% Similarity=0.345 Sum_probs=23.5
Q ss_pred hhcchHHHHHHHHh---hccccCCccchhHHHHHhh
Q 032409 12 VHSDSWLLAVAFYF---GARFGFGKNERKKLFQMIN 44 (141)
Q Consensus 12 VHSDsWLlsVAFyf---gAr~GFd~~~RkrLF~mIN 44 (141)
-.+|.|-++|.+|. +.++-|+......+..++.
T Consensus 200 ~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~ 235 (277)
T cd05036 200 SKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVT 235 (277)
T ss_pred chhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 46999999999885 3555577666666666554
No 7
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=33.12 E-value=49 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=22.6
Q ss_pred hhcchHHHHHHHHh---hccccCCccchhHHHHHh
Q 032409 12 VHSDSWLLAVAFYF---GARFGFGKNERKKLFQMI 43 (141)
Q Consensus 12 VHSDsWLlsVAFyf---gAr~GFd~~~RkrLF~mI 43 (141)
-.+|.|-+++.+|+ ..+.-|+.....+++..+
T Consensus 180 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~ 214 (256)
T cd05112 180 SKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETI 214 (256)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHH
Confidence 36999999999986 245557766666666555
No 8
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many intergrase/recombinases also have N-terminal domains, which show little sequence or structure similarity.
Probab=31.62 E-value=38 Score=22.17 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.8
Q ss_pred hcchHHHHHHHHhhccc
Q 032409 13 HSDSWLLAVAFYFGARF 29 (141)
Q Consensus 13 HSDsWLlsVAFyfgAr~ 29 (141)
..+.|.+.+++|+|.|.
T Consensus 15 ~~~~~~~~l~~~~G~R~ 31 (162)
T cd01182 15 PRDRALILLLLYTGLRV 31 (162)
T ss_pred HHHHHHHHHHHHhCCCH
Confidence 45788999999999998
No 9
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=30.67 E-value=29 Score=23.44 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHhhccccCCccchhHHHHHh
Q 032409 20 AVAFYFGARFGFGKNERKKLFQMI 43 (141)
Q Consensus 20 sVAFyfgAr~GFd~~~RkrLF~mI 43 (141)
-+||.+++++++|..+|++|..|-
T Consensus 57 ~~~~~~a~~~~~~~~~~q~lL~~~ 80 (92)
T smart00464 57 PLSDTIAALMPLELHEKQELLELE 80 (92)
T ss_pred hhhHHHhhcccccHHHHHHHHhcc
Confidence 478889999999999999998863
No 10
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=29.57 E-value=34 Score=28.87 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=27.6
Q ss_pred hhhhhcchHHHHHHHHhhccccCCccchhHHHHHhhccccee
Q 032409 9 LVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIF 50 (141)
Q Consensus 9 LVAVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~ 50 (141)
.=++|+++.-.-+-- ++-|..+|.++|..+.++|.|.
T Consensus 110 ~E~iHs~sYs~il~t-----l~~~~~~~~~~f~~~~~~p~i~ 146 (330)
T PTZ00211 110 MENIHSETYSLLIDT-----YITDEEEKDRLFHAIETIPAIK 146 (330)
T ss_pred HHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHhCHHHH
Confidence 347899988655443 3347888999999999999753
No 11
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=28.65 E-value=70 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=21.7
Q ss_pred hhcchHHHHHHHHhhc---cccCCccchhHHHHHhh
Q 032409 12 VHSDSWLLAVAFYFGA---RFGFGKNERKKLFQMIN 44 (141)
Q Consensus 12 VHSDsWLlsVAFyfgA---r~GFd~~~RkrLF~mIN 44 (141)
.++|.|-+.+.+|.-. +.-|+..+...+...|+
T Consensus 177 ~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~ 212 (257)
T cd05060 177 SKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLE 212 (257)
T ss_pred ccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH
Confidence 4699999999998644 33355555555555544
No 12
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=26.91 E-value=39 Score=32.75 Aligned_cols=40 Identities=30% Similarity=0.587 Sum_probs=30.1
Q ss_pred hhhcchHHHHHHHHhhccccCCccchhHHHHHhhcc-cceeeeec
Q 032409 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDL-PTIFEVVT 54 (141)
Q Consensus 11 AVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~l-PTv~Evvt 54 (141)
+-++|.|.+ |+|+++||-+-+=+.|-.-|-.| ||+|=.|=
T Consensus 316 er~~~~~~~----~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VP 356 (691)
T KOG1256|consen 316 ERVVELYTF----YIGAKIGFARGDILKLTDDLKELKPTVFPGVP 356 (691)
T ss_pred HHHHHHhHh----hcccEEEEecCChHHHHHHHHHhCCcEEeccH
Confidence 456788876 99999999887777776555554 88887663
No 13
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=26.42 E-value=1.4e+02 Score=25.01 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=17.1
Q ss_pred hheehhhhcCCCceEE-EeecCc
Q 032409 116 HAGITMALTNSGSAAI-SVRNGS 137 (141)
Q Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~ 137 (141)
..-|+-|.+|+|-+|. .||||.
T Consensus 106 ~~q~~QAVTN~GKIVYGtvkdGk 128 (189)
T PF04651_consen 106 DPQIMQAVTNCGKIVYGTVKDGK 128 (189)
T ss_pred chhhhhhhhcCCcEEEEEeecCe
Confidence 4557889999999876 568875
No 14
>COG1824 Permease, similar to cation transporters [Inorganic ion transport and metabolism]
Probab=23.15 E-value=54 Score=27.44 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhccccCCccc
Q 032409 16 SWLLAVAFYFGARFGFGKNE 35 (141)
Q Consensus 16 sWLlsVAFyfgAr~GFd~~~ 35 (141)
+|+++++ +.|+|||+++
T Consensus 160 a~~la~~---s~R~glDPDn 176 (203)
T COG1824 160 AVLLAIA---SYRLGLDPDN 176 (203)
T ss_pred HHHHHHH---HHHhCCCCcc
Confidence 4555544 4599999986
No 15
>PF08040 NADH_oxidored: MNLL subunit; InterPro: IPR012575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the MNLL subunits of NADH:ubiquinone oxidoreductase complex []. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear [].; GO: 0003954 NADH dehydrogenase activity, 0005739 mitochondrion
Probab=22.22 E-value=70 Score=22.41 Aligned_cols=36 Identities=19% Similarity=0.554 Sum_probs=25.9
Q ss_pred hhhhhhcchHHHH---HHHHhhccccCCccchhHHHHHhhcc
Q 032409 8 SLVAVHSDSWLLA---VAFYFGARFGFGKNERKKLFQMINDL 46 (141)
Q Consensus 8 SLVAVHSDsWLls---VAFyfgAr~GFd~~~RkrLF~mIN~l 46 (141)
-++.+|-|-|+.. +.|.+|..| |+.+-.|| ++.-+-
T Consensus 3 n~~~~vr~~~~~~~vPlgf~iG~yL--Dr~~~erl-T~FR~K 41 (59)
T PF08040_consen 3 NLIQIVRDHWVWILVPLGFVIGCYL--DRKETERL-TAFRNK 41 (59)
T ss_pred cHHHHHHHHHHHHHHhhHhhheeee--cccchHHH-Hhhcch
Confidence 3567788888754 578889999 99888887 444443
No 16
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=21.50 E-value=63 Score=29.17 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=28.3
Q ss_pred hhhcchHHHHHHHHhhccccCCccchhHHHHHhhccccee
Q 032409 11 AVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIF 50 (141)
Q Consensus 11 AVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~ 50 (141)
-+||.-.-+-+--|.- |+.+|..||+-|-.+|.|=
T Consensus 125 NIHSEmYSlLidtyIr-----D~ker~~LFnAI~t~p~vk 159 (344)
T KOG1567|consen 125 NIHSEMYSLLIDTYIR-----DPKEREFLFNAIETIPEVK 159 (344)
T ss_pred HHHHHHHHHHHHHHhc-----ChhhhhHHHHHHHhhHHHH
Confidence 4788887776666653 8999999999999999873
No 17
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=21.15 E-value=51 Score=20.58 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=15.7
Q ss_pred cCCccchhHHHHHhhccccee
Q 032409 30 GFGKNERKKLFQMINDLPTIF 50 (141)
Q Consensus 30 GFd~~~RkrLF~mIN~lPTv~ 50 (141)
||..++|.+|-.||..+=-.|
T Consensus 7 g~~~~~~~~l~~~i~~~Gg~~ 27 (63)
T PF12738_consen 7 GFSGKERSQLRKLIEALGGKY 27 (63)
T ss_dssp EB-TTTCCHHHHHHHCTT-EE
T ss_pred CCCHHHHHHHHHHHHHCCCEE
Confidence 789999999999998775443
No 18
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=20.99 E-value=1.2e+02 Score=22.53 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=21.4
Q ss_pred hcchHHHHHHHHhhc---cccCCccchhHHHHHhh
Q 032409 13 HSDSWLLAVAFYFGA---RFGFGKNERKKLFQMIN 44 (141)
Q Consensus 13 HSDsWLlsVAFyfgA---r~GFd~~~RkrLF~mIN 44 (141)
.+|.|-+++.+|.-. ++-|+...+..++.+|.
T Consensus 178 ~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~ 212 (257)
T cd05116 178 KSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIE 212 (257)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 699999999988532 33355555566666654
No 19
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=20.56 E-value=45 Score=26.60 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=16.3
Q ss_pred HhhccccCCccchhHHHHHhhcc
Q 032409 24 YFGARFGFGKNERKKLFQMINDL 46 (141)
Q Consensus 24 yfgAr~GFd~~~RkrLF~mIN~l 46 (141)
|+...=|++.++|.|||.++-||
T Consensus 137 Yl~g~~~~~aeeR~rl~rLawDl 159 (205)
T PF03241_consen 137 YLQGANGVSAEERVRLFRLAWDL 159 (205)
T ss_dssp HT-BTTTC-HHHHHHHHHHHHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHHH
Confidence 44444345999999999999887
Done!