Query 032409
Match_columns 141
No_of_seqs 120 out of 128
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 22:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vfga1 a.173.1.1 (A:137-351) 30.0 7.9 0.00057 25.9 1.0 24 22-45 20-45 (215)
2 d1f44a2 d.163.1.1 (A:130-343) 27.9 9.4 0.00068 23.6 1.0 16 14-29 30-45 (214)
3 d1ojta3 d.87.1.1 (A:471-598) D 14.3 20 0.0015 23.4 0.4 38 10-54 71-110 (128)
4 d1u8va1 a.29.3.1 (A:276-490) 4 14.0 24 0.0017 25.8 0.7 23 24-46 146-168 (215)
5 d1sg6a_ e.22.1.1 (A:) Dehydroq 12.7 52 0.0038 25.1 2.4 38 16-53 289-329 (389)
6 d1prtb1 b.40.2.1 (B:90-199) Pe 12.7 33 0.0024 23.6 1.1 25 115-139 17-41 (110)
7 d1a0pa2 d.163.1.1 (A:111-292) 12.3 34 0.0025 21.2 1.0 15 15-29 25-39 (182)
8 d1lvla3 d.87.1.1 (A:336-458) D 12.2 24 0.0017 22.9 0.2 38 11-55 72-111 (123)
9 d1miwa1 a.173.1.1 (A:140-404) 10.1 36 0.0026 22.7 0.5 14 22-35 22-35 (265)
10 d1jk0a_ a.25.1.2 (A:) Ribonucl 9.6 51 0.0037 24.8 1.4 38 10-52 151-188 (334)
No 1
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
Probab=30.05 E-value=7.9 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=15.6
Q ss_pred HHHhhccccCC--ccchhHHHHHhhc
Q 032409 22 AFYFGARFGFG--KNERKKLFQMIND 45 (141)
Q Consensus 22 AFyfgAr~GFd--~~~RkrLF~mIN~ 45 (141)
||-|+|||||. .+..+.+-.++|.
T Consensus 20 a~RF~ar~gf~i~~~T~~~i~~~~~~ 45 (215)
T d1vfga1 20 ALRFAGRLNFKLSRSTEKLLKQAVNL 45 (215)
T ss_dssp HHHHHHHHTCEECHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHc
Confidence 67889999886 4444445555554
No 2
>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=27.88 E-value=9.4 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=14.4
Q ss_pred cchHHHHHHHHhhccc
Q 032409 14 SDSWLLAVAFYFGARF 29 (141)
Q Consensus 14 SDsWLlsVAFyfgAr~ 29 (141)
-|.|++.++|+.|.|.
T Consensus 30 R~~ali~l~~~tGlR~ 45 (214)
T d1f44a2 30 RNLAFLGIAYNTLLRI 45 (214)
T ss_dssp HHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHccCH
Confidence 3689999999999997
No 3
>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=14.29 E-value=20 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred hhhhcchH--HHHHHHHhhccccCCccchhHHHHHhhcccceeeeec
Q 032409 10 VAVHSDSW--LLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVT 54 (141)
Q Consensus 10 VAVHSDsW--LlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~Evvt 54 (141)
|+-|++-+ .+++|...|..+ ..|..||--+||+-|.+.
T Consensus 71 vG~~A~ElI~~~~lai~~~~t~-------~~l~~~i~~hPT~sE~l~ 110 (128)
T d1ojta3 71 VGPNGGDMIGEVCLAIEMGCDA-------ADIGKTIHPHPTLGESIG 110 (128)
T ss_dssp ESTTHHHHHHHHHHHHHTTCBH-------HHHHTSCCCSSSSTTHHH
T ss_pred EhhhHHHHHHHHHHHHHcCCCH-------HHHhhCcCcCCCHHHHHH
Confidence 34444443 467777888877 899999999999999874
No 4
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]}
Probab=14.00 E-value=24 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=17.8
Q ss_pred HhhccccCCccchhHHHHHhhcc
Q 032409 24 YFGARFGFGKNERKKLFQMINDL 46 (141)
Q Consensus 24 yfgAr~GFd~~~RkrLF~mIN~l 46 (141)
|+-+.=|++.++|.+||.++-|+
T Consensus 146 Yl~g~~~~~aeeRvkl~rLawDl 168 (215)
T d1u8va1 146 FFAAAPTCTTEERMRVLRFLENI 168 (215)
T ss_dssp HTCCSTTSCHHHHHHHHHHHHHH
T ss_pred HHccCCCCCHHHHHHHHHHHHHH
Confidence 44444456999999999999885
No 5
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}
Probab=12.68 E-value=52 Score=25.06 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhcccc-CCccchhHHHHHhhc--ccceeeee
Q 032409 16 SWLLAVAFYFGARFG-FGKNERKKLFQMIND--LPTIFEVV 53 (141)
Q Consensus 16 sWLlsVAFyfgAr~G-Fd~~~RkrLF~mIN~--lPTv~Evv 53 (141)
++=|.++.+++.++| ++.+++.|++.++.. |||-+.-+
T Consensus 289 aiGml~~~~ls~~~g~l~~~~~~~i~~~l~~lgLPt~l~dl 329 (389)
T d1sg6a_ 289 AIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDA 329 (389)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCCCSTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccchhh
Confidence 455777778887776 588999999999985 78866543
No 6
>d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits, C-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=12.67 E-value=33 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=20.8
Q ss_pred hhheehhhhcCCCceEEEeecCccc
Q 032409 115 EHAGITMALTNSGSAAISVRNGSTA 139 (141)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
+.|.-..+++||+--++-+|||..+
T Consensus 17 VtatRLl~stns~LCAVF~RdG~pv 41 (110)
T d1prtb1 17 VTATRLLSSTNSRLCAVFVRSGQPV 41 (110)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEE
T ss_pred hhHHHHhccCCCCeEEEEecCCCee
Confidence 4566678999999999999999764
No 7
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=12.27 E-value=34 Score=21.19 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.8
Q ss_pred chHHHHHHHHhhccc
Q 032409 15 DSWLLAVAFYFGARF 29 (141)
Q Consensus 15 DsWLlsVAFyfgAr~ 29 (141)
|..|+.+++|.|.|.
T Consensus 25 d~~l~~l~~~tG~R~ 39 (182)
T d1a0pa2 25 DKAMLEVLYATGLRV 39 (182)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhCCcc
Confidence 566788999999997
No 8
>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=12.16 E-value=24 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.7
Q ss_pred hhhcchH--HHHHHHHhhccccCCccchhHHHHHhhcccceeeeecc
Q 032409 11 AVHSDSW--LLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTG 55 (141)
Q Consensus 11 AVHSDsW--LlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~Evvtg 55 (141)
.-|.+-+ .+++|...|..+ ..|-.+|--.||+-|++.-
T Consensus 72 G~~A~elI~~~~lai~~~~t~-------~~l~~~i~~hPT~sE~~~~ 111 (123)
T d1lvla3 72 GVAVSELSTAFAQSLEMGACL-------EDVAGTIHAHPTLGEAVQE 111 (123)
T ss_dssp ETTGGGHHHHHHHHHHHTCBH-------HHHHTSCCCTTCTTHHHHH
T ss_pred eCchhhHHHHHHHHHHcCCCH-------HHHhcCCCCCCCHHHHHHH
Confidence 3344444 467788888888 8888999999999998753
No 9
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.06 E-value=36 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=10.9
Q ss_pred HHHhhccccCCccc
Q 032409 22 AFYFGARFGFGKNE 35 (141)
Q Consensus 22 AFyfgAr~GFd~~~ 35 (141)
||-|++||||.-++
T Consensus 22 a~RFa~rl~f~i~~ 35 (265)
T d1miwa1 22 AVRFVSELGFALAP 35 (265)
T ss_dssp HHHHHHHHCCEECH
T ss_pred HHHHHHHhCCCccH
Confidence 78899999986543
No 10
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=9.63 E-value=51 Score=24.77 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=29.1
Q ss_pred hhhhcchHHHHHHHHhhccccCCccchhHHHHHhhcccceeee
Q 032409 10 VAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEV 52 (141)
Q Consensus 10 VAVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~Ev 52 (141)
=++|+++.-.-+--|+ -|..++..||+.|...|.+.+=
T Consensus 151 E~IHsesYS~ii~tl~-----~d~~e~~~lf~~~~~~~~i~~k 188 (334)
T d1jk0a_ 151 ENIHSETYSLLIDTYI-----KDPKESEFLFNAIHTIPEIGEK 188 (334)
T ss_dssp HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHCHHHHHH
Confidence 3689988766665543 3888899999999999988653
Done!