BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032410
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
           Complexed With Galactose
          Length = 419

 Score = 34.3 bits (77), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 5   LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60
           L  +  E ++A+ + + + TL KRA H   EN R     +A+ +GN   FG+L++AS
Sbjct: 276 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNAS 332


>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
 pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
           Mgamppnp And Galactose
          Length = 399

 Score = 32.7 bits (73), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 5   LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSE- 63
           L  V+ E  EA ++ +     +RA H   E RR A+   A + G+ + FG+L   S    
Sbjct: 262 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLXVESHRSL 321

Query: 64  ---------PLIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFE 114
                     L QL E     P              C + L++A  A  A  +++  Y  
Sbjct: 322 RDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTVTLLEASAAPHAXRHIQEHYGG 381

Query: 115 LQPELASQLNADSAVLIC 132
                 SQ  AD A ++C
Sbjct: 382 TATFYLSQ-AADGAKVLC 398


>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
           Horikoshi
 pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
           Horikoshii With Amp-Pnp And Galactose
 pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
           Horikoshii With Amp-Pn And Galactose
          Length = 350

 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 10  EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60
           +EV E   ++L P   K   +   EN RV +  +A K GN ++ GK+++ +
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTA 268


>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
 pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
           Galactose, Adp And Magnesium
          Length = 352

 Score = 25.8 bits (55), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 10  EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSE------ 63
           +EV E    +L P   K   +   EN RV +  +A K G+ +  GK+++ +  +      
Sbjct: 220 KEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYR 279

Query: 64  -PLIQLNEILQRAP--XXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFELQPELA 120
               +L+  +++A                   +ALVD D+A+     +  EY        
Sbjct: 280 VSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYL------- 332

Query: 121 SQLNADSAVLICKPGDCARV 140
           ++ +  +   + KP D   V
Sbjct: 333 AKFSWKAKYFVVKPSDGVGV 352


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,655,359
Number of Sequences: 62578
Number of extensions: 112022
Number of successful extensions: 396
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)