Query 032410
Match_columns 141
No_of_seqs 106 out of 1039
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 3.7E-33 8.1E-38 234.5 15.9 139 3-141 275-423 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 1.2E-32 2.5E-37 226.9 14.4 132 3-141 246-389 (390)
3 PTZ00290 galactokinase; Provis 100.0 2.5E-29 5.4E-34 213.5 14.3 124 11-141 315-456 (468)
4 PRK05101 galactokinase; Provis 100.0 6.1E-29 1.3E-33 206.7 15.5 132 3-141 240-382 (382)
5 PRK05322 galactokinase; Provis 100.0 3.6E-28 7.8E-33 202.4 16.0 132 3-141 245-387 (387)
6 PRK00555 galactokinase; Provis 100.0 2.6E-27 5.6E-32 195.9 16.2 131 3-141 222-362 (363)
7 TIGR00131 gal_kin galactokinas 100.0 1.2E-27 2.6E-32 198.8 14.2 132 3-141 242-386 (386)
8 PLN02521 galactokinase 99.9 4.6E-27 1E-31 201.1 12.0 118 22-141 359-494 (497)
9 PRK03817 galactokinase; Provis 99.9 2E-24 4.3E-29 177.4 16.0 125 5-141 216-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.8 1.5E-18 3.2E-23 146.2 10.1 117 22-140 353-486 (489)
11 PF08544 GHMP_kinases_C: GHMP 99.6 1.3E-15 2.8E-20 100.7 8.0 72 41-113 1-84 (85)
12 PTZ00298 mevalonate kinase; Pr 99.6 9.5E-14 2.1E-18 113.5 13.4 78 37-115 226-313 (328)
13 COG1577 ERG12 Mevalonate kinas 99.5 6.7E-14 1.4E-18 113.8 11.2 83 28-114 202-294 (307)
14 PRK03926 mevalonate kinase; Pr 99.5 1.3E-13 2.7E-18 110.9 12.6 87 39-140 202-298 (302)
15 PLN02677 mevalonate kinase 99.5 9.8E-13 2.1E-17 110.1 12.6 91 38-140 272-381 (387)
16 TIGR00549 mevalon_kin mevalona 99.5 3.3E-13 7.2E-18 106.8 9.0 59 36-95 206-273 (273)
17 TIGR01220 Pmev_kin_Gr_pos phos 99.4 8.2E-12 1.8E-16 103.4 11.4 88 31-131 250-353 (358)
18 COG2605 Predicted kinase relat 99.3 8.7E-12 1.9E-16 100.3 10.5 82 27-111 221-313 (333)
19 PRK13412 fkp bifunctional fuco 99.3 1.1E-11 2.5E-16 112.9 12.5 78 31-110 860-950 (974)
20 PLN02451 homoserine kinase 99.3 2.3E-11 5.1E-16 101.2 12.3 100 31-140 254-364 (370)
21 PRK01212 homoserine kinase; Pr 99.3 2.5E-11 5.4E-16 97.7 12.0 100 30-141 193-301 (301)
22 COG0083 ThrB Homoserine kinase 99.3 4.3E-11 9.3E-16 97.0 12.8 102 28-141 187-297 (299)
23 PTZ00299 homoserine kinase; Pr 99.3 5.3E-11 1.2E-15 98.0 10.7 100 29-140 200-321 (336)
24 TIGR00191 thrB homoserine kina 99.1 7.8E-10 1.7E-14 89.4 11.5 100 30-140 193-301 (302)
25 KOG1511 Mevalonate kinase MVK/ 99.1 1.3E-09 2.9E-14 89.6 11.5 101 26-140 262-379 (397)
26 PRK03188 4-diphosphocytidyl-2- 99.0 6.3E-09 1.4E-13 83.9 11.0 92 35-141 195-295 (300)
27 PRK02534 4-diphosphocytidyl-2- 98.8 3.1E-08 6.7E-13 80.4 9.4 96 32-140 205-310 (312)
28 TIGR00144 beta_RFAP_syn beta-R 98.8 1.4E-07 3.1E-12 77.3 12.0 96 32-141 214-324 (324)
29 PRK00128 ipk 4-diphosphocytidy 98.7 5.4E-08 1.2E-12 77.8 8.0 70 38-110 194-271 (286)
30 KOG1537 Homoserine kinase [Ami 98.6 3.3E-07 7.1E-12 73.4 9.2 100 30-140 240-352 (355)
31 PRK14613 4-diphosphocytidyl-2- 98.6 1.8E-07 3.8E-12 75.9 7.4 75 37-114 207-289 (297)
32 COG1907 Predicted archaeal sug 98.5 2.2E-06 4.8E-11 69.3 12.2 114 10-140 181-310 (312)
33 PRK01123 shikimate kinase; Pro 98.5 2E-06 4.4E-11 69.0 10.4 80 39-140 194-281 (282)
34 PRK14616 4-diphosphocytidyl-2- 98.4 5.8E-07 1.3E-11 72.2 6.9 78 35-115 192-277 (287)
35 TIGR01920 Shik_kin_archae shik 98.3 1.7E-06 3.7E-11 68.9 7.4 67 36-110 181-253 (261)
36 PRK14614 4-diphosphocytidyl-2- 98.3 4.2E-06 9.1E-11 67.1 8.3 61 43-110 207-268 (280)
37 PRK14612 4-diphosphocytidyl-2- 98.2 2.4E-06 5.1E-11 68.3 5.4 72 36-110 188-263 (276)
38 TIGR00154 ispE 4-diphosphocyti 98.2 1.1E-05 2.3E-10 65.3 8.8 70 41-113 199-276 (293)
39 TIGR01219 Pmev_kin_ERG8 phosph 98.0 0.00021 4.6E-09 61.3 13.2 51 62-114 381-431 (454)
40 PRK14615 4-diphosphocytidyl-2- 97.9 3.2E-05 7E-10 62.6 7.2 46 62-110 240-286 (296)
41 PRK14608 4-diphosphocytidyl-2- 97.8 9.8E-05 2.1E-09 59.6 7.1 46 62-110 230-277 (290)
42 PRK14611 4-diphosphocytidyl-2- 97.4 0.0013 2.7E-08 52.7 8.6 73 22-98 174-254 (275)
43 PRK14610 4-diphosphocytidyl-2- 97.3 0.0007 1.5E-08 54.5 6.2 47 62-110 222-269 (283)
44 PRK14609 4-diphosphocytidyl-2- 97.2 0.00028 6.1E-09 56.4 3.3 34 62-98 219-252 (269)
45 PRK00343 ipk 4-diphosphocytidy 95.9 0.016 3.4E-07 46.4 5.2 56 47-111 206-262 (271)
46 TIGR01240 mevDPdecarb diphosph 95.6 0.16 3.5E-06 41.5 10.0 80 30-112 204-304 (305)
47 COG1947 IspE 4-diphosphocytidy 95.3 0.036 7.7E-07 45.2 5.0 46 62-110 225-271 (289)
48 PRK00650 4-diphosphocytidyl-2- 94.5 0.085 1.8E-06 42.9 5.4 49 62-113 206-259 (288)
49 KOG4644 L-fucose kinase [Carbo 92.7 0.91 2E-05 40.2 8.8 81 26-107 821-917 (948)
50 PLN02407 diphosphomevalonate d 92.6 1.5 3.3E-05 36.6 9.7 77 35-113 234-332 (343)
51 KOG2833 Mevalonate pyrophospha 92.5 2.4 5.2E-05 35.3 10.6 88 23-114 223-331 (395)
52 COG1685 Archaeal shikimate kin 90.4 0.81 1.7E-05 37.0 5.7 53 68-140 222-275 (278)
53 PRK05905 hypothetical protein; 90.2 0.33 7.2E-06 38.8 3.4 31 62-96 223-253 (258)
54 COG3407 MVD1 Mevalonate pyroph 84.4 19 0.00042 29.9 10.5 82 26-113 208-309 (329)
55 PF03460 NIR_SIR_ferr: Nitrite 74.3 16 0.00035 22.5 5.7 45 63-110 24-68 (69)
56 TIGR01743 purR_Bsub pur operon 60.1 72 0.0016 25.7 8.0 78 35-114 4-91 (268)
57 PF06153 DUF970: Protein of un 57.7 35 0.00077 23.9 5.1 48 65-115 13-67 (109)
58 COG4542 PduX Protein involved 56.3 73 0.0016 26.0 7.3 71 40-114 201-283 (293)
59 PF09182 PuR_N: Bacterial puri 53.4 49 0.0011 21.4 4.9 53 35-89 3-65 (70)
60 PRK09213 pur operon repressor; 52.0 1.1E+02 0.0023 24.7 7.8 79 34-114 5-93 (271)
61 PRK04181 4-diphosphocytidyl-2- 51.3 13 0.00029 29.5 2.4 26 62-97 230-255 (257)
62 COG3890 ERG8 Phosphomevalonate 45.3 1.8E+02 0.0038 24.2 8.6 25 75-99 283-307 (337)
63 PF06698 DUF1192: Protein of u 41.3 78 0.0017 19.7 4.3 17 5-21 18-34 (59)
64 PRK09636 RNA polymerase sigma 41.0 1.4E+02 0.003 23.6 6.9 23 38-60 177-199 (293)
65 KOG1659 Class 2 transcription 39.2 1.1E+02 0.0025 24.0 5.8 69 13-81 7-98 (224)
66 PRK05377 fructose-1,6-bisphosp 37.9 42 0.00092 27.5 3.4 44 62-113 121-164 (296)
67 TIGR02957 SigX4 RNA polymerase 37.8 1E+02 0.0023 24.3 5.7 23 38-60 170-192 (281)
68 PF06757 Ins_allergen_rp: Inse 33.4 2E+02 0.0043 21.3 7.5 49 11-59 6-55 (179)
69 COG3064 TolA Membrane protein 33.3 45 0.00097 27.9 2.9 20 82-101 39-60 (387)
70 COG3139 Uncharacterized protei 32.8 50 0.0011 22.1 2.5 21 13-33 3-23 (90)
71 PF07023 DUF1315: Protein of u 31.7 44 0.00096 22.8 2.2 20 14-33 2-21 (93)
72 COG1448 TyrB Aspartate/tyrosin 31.6 83 0.0018 26.9 4.2 66 40-110 324-394 (396)
73 cd08780 Death_TRADD Death Doma 31.6 1.1E+02 0.0024 20.7 4.1 38 20-57 47-87 (90)
74 PRK09635 sigI RNA polymerase s 29.3 1.7E+02 0.0036 23.5 5.6 23 38-60 180-202 (290)
75 PF13686 DrsE_2: DsrE/DsrF/Drs 29.1 55 0.0012 23.8 2.6 30 53-83 81-112 (148)
76 COG2221 DsrA Dissimilatory sul 27.8 1.2E+02 0.0027 25.1 4.6 44 63-109 45-88 (317)
77 PF08060 NOSIC: NOSIC (NUC001) 26.9 49 0.0011 19.8 1.6 22 100-121 15-36 (53)
78 PF15136 UPF0449: Uncharacteri 26.6 1.9E+02 0.0041 19.8 4.6 37 22-58 53-91 (97)
79 PF12870 Lumazine_bd: Lumazine 26.3 43 0.00094 21.7 1.5 24 38-61 13-36 (111)
80 KOG3939 Selenophosphate synthe 26.3 3.6E+02 0.0079 22.0 7.2 87 22-110 165-276 (312)
81 PF00732 GMC_oxred_N: GMC oxid 26.2 9.2 0.0002 30.0 -2.2 12 83-94 5-16 (296)
82 PRK05325 hypothetical protein; 25.5 58 0.0013 27.9 2.4 34 90-137 288-321 (401)
83 cd07922 CarBa CarBa is the A s 23.6 1.8E+02 0.0039 19.2 4.0 27 30-56 29-55 (81)
84 PF03197 FRD2: Bacteriophage F 23.1 95 0.0021 21.4 2.6 23 91-113 79-101 (102)
85 cd06831 PLPDE_III_ODC_like_AZI 22.8 1.6E+02 0.0035 24.7 4.6 43 67-116 192-235 (394)
86 PF04316 FlgM: Anti-sigma-28 f 22.6 1.8E+02 0.004 17.3 3.9 25 35-59 27-55 (57)
87 cd00949 FBP_aldolase_I_bact Fr 22.6 1.5E+02 0.0032 24.4 4.0 39 62-107 118-156 (292)
88 PF08250 Sperm_act_pep: Sperm- 22.6 40 0.00087 13.7 0.4 6 82-87 3-8 (10)
89 KOG3304 Surfeit family protein 22.6 88 0.0019 22.8 2.5 9 84-92 2-10 (148)
90 TIGR02877 spore_yhbH sporulati 21.6 1.2E+02 0.0027 25.7 3.6 34 90-137 268-301 (371)
91 PHA01735 hypothetical protein 21.3 88 0.0019 20.3 2.0 42 9-50 6-47 (76)
92 PF15573 Imm27: Immunity prote 21.1 1.8E+02 0.0039 23.3 4.1 40 22-61 17-59 (259)
93 PF08434 CLCA_N: Calcium-activ 20.9 2.7E+02 0.0059 22.4 5.3 41 81-121 24-65 (262)
94 PF08429 PLU-1: PLU-1-like pro 20.1 4.7E+02 0.01 21.0 8.0 65 7-71 82-160 (335)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=3.7e-33 Score=234.48 Aligned_cols=139 Identities=73% Similarity=1.202 Sum_probs=133.3
Q ss_pred CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEIL 72 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a 72 (141)
++|||++.+++...+..+++.+++|++|+++|+.||.+++++|+++|++.||++|++|| ||++|.|++.+
T Consensus 275 ~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a 354 (423)
T PLN02865 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEIL 354 (423)
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHH
Confidence 57999999999999988999999999999999999999999999999999999999999 89999999999
Q ss_pred hhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 73 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 73 ~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
++..|++|+||||||||||+++|++++.++.+++++.+.|++++|++.++++.++.+|+++|++|++++
T Consensus 355 ~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 355 LKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 975699999999999999999999999999999999999999999888888999999999999999875
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=226.94 Aligned_cols=132 Identities=37% Similarity=0.585 Sum_probs=126.0
Q ss_pred CCcCCCCHHHHHHHhccc--CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNE 70 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l--~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~ 70 (141)
++|||++.++|.++.+.+ +|..+||++|+++|+.|+.++++||+++|+..||++|++|| |||+|+|++
T Consensus 246 ~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve 325 (390)
T COG0153 246 KSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVE 325 (390)
T ss_pred hhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 689999999999999998 58899999999999999999999999999999999999999 999999999
Q ss_pred HHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 71 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 71 ~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
++....|++|+||||||||||+|+|++++.++.+.+.+.+.|.+. +|.++.+|+++|++|++++
T Consensus 326 ~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~-------~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 326 IALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV-------TGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhh-------cCccccEEEEeccCCcccc
Confidence 998768889999999999999999999999999999999999985 5999999999999999864
No 3
>PTZ00290 galactokinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=213.49 Aligned_cols=124 Identities=22% Similarity=0.366 Sum_probs=112.7
Q ss_pred HHH-HHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410 11 EVY-EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWK-------SGNSQDFGKLISASG----------SEPLIQLNEIL 72 (141)
Q Consensus 11 ~~~-~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~-------~~d~~~lg~lm~~sh----------~pe~d~l~~~a 72 (141)
.++ ..++..+++.+++|++|+++|+.||.+++++|. ++|++.||++|++|| ||++|.|++.+
T Consensus 315 ~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~ 394 (468)
T PTZ00290 315 VAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELI 394 (468)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344 366778899999999999999999999999995 566999999999999 99999999987
Q ss_pred hhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 73 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 73 ~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
.+..|++|+||||||||||+|+|++++..+++++++.+.|.++ ||.++.+|+++|++||+++
T Consensus 395 ~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 395 NEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred HHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 5547999999999999999999999999999999999999884 6899999999999999874
No 4
>PRK05101 galactokinase; Provisional
Probab=99.96 E-value=6.1e-29 Score=206.72 Aligned_cols=132 Identities=31% Similarity=0.462 Sum_probs=124.0
Q ss_pred CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEIL 72 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a 72 (141)
++||+++.+++...++.|++..++|++|++.|+.||.+++++|+++|++.||++|+++| ||++|.|++.+
T Consensus 240 ~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a 319 (382)
T PRK05101 240 KALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIV 319 (382)
T ss_pred HhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHH
Confidence 36899999999988899999999999999999999999999999999999999999999 99999999999
Q ss_pred hhCCCc-eeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 73 QRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 73 ~~~~Ga-~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
++..|+ +|+||||||||||+|+|++++..+++.+++.+.|+++ ++.++.+|+++|++||+++
T Consensus 320 ~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 382 (382)
T PRK05101 320 KAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAK-------TGLKETFYVCKASQGAGQC 382 (382)
T ss_pred HhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCeEEEEecCCCcccC
Confidence 984497 5889999999999999999999999999999999985 5899999999999999975
No 5
>PRK05322 galactokinase; Provisional
Probab=99.96 E-value=3.6e-28 Score=202.44 Aligned_cols=132 Identities=36% Similarity=0.549 Sum_probs=124.0
Q ss_pred CCcCCCCHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEI 71 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l-~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~ 71 (141)
++|||++.+++..+.+.+ ++.+++|++|++.|+.|+..++.+|.++|++.||++|+++| +|++|.|++.
T Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~ 324 (387)
T PRK05322 245 KSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEA 324 (387)
T ss_pred cchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHH
Confidence 578999999999988888 59999999999999999999999999999999999999988 8999999999
Q ss_pred HhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 72 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 72 a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
+++..|++|+||||||||||+|+|++.+..+++.+.+.+.|+++ +|.++.+|+++|++||+++
T Consensus 325 a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 325 AWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred HHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 97547999999999999999999999999999999999999985 6999999999999999974
No 6
>PRK00555 galactokinase; Provisional
Probab=99.95 E-value=2.6e-27 Score=195.86 Aligned_cols=131 Identities=33% Similarity=0.407 Sum_probs=122.9
Q ss_pred CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEIL 72 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a 72 (141)
++|||+..+++.......++..++|++|++.|+.|+..++.+|.++|++.||++|+++| +|++|.|++.+
T Consensus 222 ~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a 301 (363)
T PRK00555 222 SSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSA 301 (363)
T ss_pred cchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHH
Confidence 47899988888887777789999999999999999999999999999999999999999 89999999999
Q ss_pred hhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 73 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 73 ~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
++ .|++|+||||||||||+|+|++++..+++.+.+++.|.++ ++.++.+|+++|++|++++
T Consensus 302 ~~-~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 302 VR-AGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred Hh-cCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 98 8999999999999999999999988999999999999985 5889999999999999875
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.95 E-value=1.2e-27 Score=198.79 Aligned_cols=132 Identities=25% Similarity=0.367 Sum_probs=120.8
Q ss_pred CCcCCCCHHHHH---HHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHH
Q 032410 3 PRLCNVEEEVYE---AHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLN 69 (141)
Q Consensus 3 ~~Lr~v~~~~~~---~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~ 69 (141)
+.||+++.+++. ..+..+++..++|++|++.|+.||.+++.+|.++|++.||++|+++| ||++|.++
T Consensus 242 ~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv 321 (386)
T TIGR00131 242 GALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELV 321 (386)
T ss_pred cchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHH
Confidence 378999988887 45677889999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 70 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 70 ~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
+.+...+|++|+||||||||||+|+|++++.++++.+++++.|.++ +|.++.+|+++|++|++.+
T Consensus 322 ~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 322 CSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred HHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 8865448999999999999999999999999999999999999764 5999999999999999864
No 8
>PLN02521 galactokinase
Probab=99.94 E-value=4.6e-27 Score=201.11 Aligned_cols=118 Identities=25% Similarity=0.426 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHhhC----------ChhHHHHHHHHhhCCCceeEEEeCC
Q 032410 22 PTLAKRAEHYFTENRRVAKGLEAWKSG-----NSQDFGKLISASG----------SEPLIQLNEILQRAPGVFGARFSGA 86 (141)
Q Consensus 22 ~~~~~r~~~~v~e~~Rv~~~~~aL~~~-----d~~~lg~lm~~sh----------~pe~d~l~~~a~~~~Ga~GarisGa 86 (141)
+.+++|++|+++|+.||.+++++|+++ +++.||++|+++| ||++|.|++.+++ .|++|+|||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGa 437 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGA 437 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCC
Confidence 488999999999999999999999987 3999999999999 9999999999998 79999999999
Q ss_pred CCCceeEEEeccccHHHHHHHHHHHHHhhch---hhhhhcCCCceEEEeecCCCeeeC
Q 032410 87 GFRGCCLALVDADRAEEAASYVRSEYFELQP---ELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 87 G~GG~vial~~~~~~~~~~~~l~~~y~~~~~---~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
|||||+|+|++++..+.+++.+.+.|.+++| ++ +.++.++.+|+++|++||+++
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~-~~~~~~~~~~~~~p~~Ga~~~ 494 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVI-KEEDLGLYVFASKPSSGAAIL 494 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccc-cccCCCCcEEEEecCCCceEe
Confidence 9999999999999999999999999998642 22 336889999999999999873
No 9
>PRK03817 galactokinase; Provisional
Probab=99.92 E-value=2e-24 Score=177.37 Aligned_cols=125 Identities=34% Similarity=0.482 Sum_probs=113.0
Q ss_pred cCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHHhh
Q 032410 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEILQR 74 (141)
Q Consensus 5 Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a~~ 74 (141)
+++++.+++ ..+++.+++|+.|++.|+.|+..++.+|.++|++.||++|+++| +|++|+|++.+++
T Consensus 216 ~~~~~~~~~----~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~ 291 (351)
T PRK03817 216 SKEVTEEDL----SKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE 291 (351)
T ss_pred hhcCCHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 455554443 35778899999999999999999999999999999999999987 9999999999998
Q ss_pred CCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 75 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 75 ~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
.|++|+||||||||||+++|+++++.+++++.+++.|.+. ++..+.+++++|++|++++
T Consensus 292 -~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 292 -LGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKR-------FGIDPKYFVVESSDGVRKI 350 (351)
T ss_pred -cCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCceeC
Confidence 7999999999999999999999999999999999999874 5889999999999999985
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.5e-18 Score=146.22 Aligned_cols=117 Identities=32% Similarity=0.497 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHhhC----------ChhHHHHHHHHhhCCCceeEEEeC
Q 032410 22 PTLAKRAEHYFTENRRVAKGLEAWKSGN------SQDFGKLISASG----------SEPLIQLNEILQRAPGVFGARFSG 85 (141)
Q Consensus 22 ~~~~~r~~~~v~e~~Rv~~~~~aL~~~d------~~~lg~lm~~sh----------~pe~d~l~~~a~~~~Ga~GarisG 85 (141)
.++++|++|++.|+.|+.++.....+++ +..||+|||+|| |||+|+|++++++ +|.+|+|+||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTG 431 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeec
Confidence 4577999999999999999999888763 566899999999 9999999999998 8889999999
Q ss_pred CCCCceeEEEeccccHHHHHHHHHHHHH-hhchhhhhhcCCCceEEEeecCCCeee
Q 032410 86 AGFRGCCLALVDADRAEEAASYVRSEYF-ELQPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 86 aG~GG~vial~~~~~~~~~~~~l~~~y~-~~~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
+|||||++++++.+..+.+.+.+++.|+ +.+|++++.. .+..++.++|..|+-+
T Consensus 432 aGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~-~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 432 AGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDE-LKKALIVSKPAAGVLL 486 (489)
T ss_pred cccccceeeeccccchHHHHHhhhhhhhccccchhhhch-hhceEEEecCchhhhh
Confidence 9999999999999999999999877776 4557777653 6777888899888744
No 11
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.63 E-value=1.3e-15 Score=100.69 Aligned_cols=72 Identities=29% Similarity=0.457 Sum_probs=64.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEe-ccccHHHHHHHH
Q 032410 41 GLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYV 108 (141)
Q Consensus 41 ~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~-~~~~~~~~~~~l 108 (141)
|++||.++|++.|+++|+++| +|+++.+++.+.+ .|++|++|||+|||||+++|+ +++.++++.+++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 578999999999999999553 8899999999987 899999999999999999999 567899999999
Q ss_pred HHHHH
Q 032410 109 RSEYF 113 (141)
Q Consensus 109 ~~~y~ 113 (141)
++.|.
T Consensus 80 ~~~~~ 84 (85)
T PF08544_consen 80 REHYK 84 (85)
T ss_dssp HHHTH
T ss_pred HHhCC
Confidence 88775
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.55 E-value=9.5e-14 Score=113.45 Aligned_cols=78 Identities=29% Similarity=0.402 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHH
Q 032410 37 RVAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 106 (141)
Q Consensus 37 Rv~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~ 106 (141)
++.+++.+|.++|++.++++|+++| +|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+
T Consensus 226 ~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~ 304 (328)
T PTZ00298 226 CVSEAKEALQKGNLFRVGELMNANHDLCQKLTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIAK 304 (328)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHHH
Confidence 4678889999999999999999876 8999999999997 89999999999999999999976 66888888
Q ss_pred HHHHHHHhh
Q 032410 107 YVRSEYFEL 115 (141)
Q Consensus 107 ~l~~~y~~~ 115 (141)
.+++.|...
T Consensus 305 ~l~~~~~~~ 313 (328)
T PTZ00298 305 AVRARCPEA 313 (328)
T ss_pred HHHHHhhhc
Confidence 988887753
No 13
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.54 E-value=6.7e-14 Score=113.82 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=67.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEec
Q 032410 28 AEHYFTENRR-VAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 97 (141)
Q Consensus 28 ~~~~v~e~~R-v~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~ 97 (141)
...++..... +.++..+|.++|.+.||++|+.+| +|++|+|++.+++ .|++|+|+||||+|||+|+|.+
T Consensus 202 ~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~~ 280 (307)
T COG1577 202 IDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIALAK 280 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEEec
Confidence 3444444444 668889999999999999999998 9999999999998 9999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHh
Q 032410 98 ADRAEEAASYVRSEYFE 114 (141)
Q Consensus 98 ~~~~~~~~~~l~~~y~~ 114 (141)
..+ . .+.+.....+
T Consensus 281 ~~~--~-~~~l~~~~~~ 294 (307)
T COG1577 281 NEE--I-AETLSNRLEK 294 (307)
T ss_pred cch--H-HHHHHHHHHh
Confidence 622 1 3444444443
No 14
>PRK03926 mevalonate kinase; Provisional
Probab=99.54 E-value=1.3e-13 Score=110.91 Aligned_cols=87 Identities=28% Similarity=0.458 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHH
Q 032410 39 AKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 109 (141)
Q Consensus 39 ~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~ 109 (141)
..+..+|.++|++.|+++|+++| +|+++++++.+.+ .|++|++|||+|+|||++++++++..+++.+.++
T Consensus 202 ~~~~~al~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~ 280 (302)
T PRK03926 202 EKGEELILSGDYVSLGELMNINQGLLDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAIK 280 (302)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHHH
Confidence 35568899999999999999876 8999999999987 8999999999999999999998888887777766
Q ss_pred HHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 110 SEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 110 ~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
+. .+.++++++ .+|+++
T Consensus 281 ~~--------------~~~~~~~~~~~~G~~i 298 (302)
T PRK03926 281 IA--------------GGKPIITKITDEGLRI 298 (302)
T ss_pred hc--------------CCeEEEEecCCCeeEE
Confidence 42 246788888 679876
No 15
>PLN02677 mevalonate kinase
Probab=99.46 E-value=9.8e-13 Score=110.06 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHHHHHHHhc---------CCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc
Q 032410 38 VAKGLEAWKS---------GNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 99 (141)
Q Consensus 38 v~~~~~aL~~---------~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~ 99 (141)
+.++..+|.+ +|++.|+++|+.+| +|++|.+++++.+ .| +|+|+||||+|||+|+|++++
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~~ 349 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPTL 349 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEcccc
Confidence 4677788887 56999999999998 9999999999987 65 799999999999999999865
Q ss_pred cHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 100 RAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 100 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
..++.++.+.+.+.+. |+ ++|.+++ +.|+.+
T Consensus 350 ~~~~~~~~l~~~l~~~--------G~--~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 350 LSGTVVDKVIAELESS--------GF--QCFTAGIGGNGVQI 381 (387)
T ss_pred cchhHHHHHHHHHHHC--------CC--eEEEEEeCCCceEE
Confidence 4455555666666653 33 6788887 888876
No 16
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.46 E-value=3.3e-13 Score=106.75 Aligned_cols=59 Identities=31% Similarity=0.543 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEE
Q 032410 36 RRVAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 95 (141)
Q Consensus 36 ~Rv~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial 95 (141)
.++.+++.+|.++|++.||++|+++| +|++|+|++.+++ .|++|+||||||+|||+|+|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKALGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 46788899999999999999999987 9999999999997 89999999999999999986
No 17
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.36 E-value=8.2e-12 Score=103.37 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=68.3
Q ss_pred HHHHHHH-HHHHHHHHhcCCHHHHHHHHHhhC---------------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEE
Q 032410 31 YFTENRR-VAKGLEAWKSGNSQDFGKLISASG---------------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 94 (141)
Q Consensus 31 ~v~e~~R-v~~~~~aL~~~d~~~lg~lm~~sh---------------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~via 94 (141)
++.++.. +.++..+|.++|++.|+++|+++| +|+++.|++.+++ .|+ |+|+||||+|||+|+
T Consensus 250 ~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ia 327 (358)
T TIGR01220 250 FLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIA 327 (358)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEE
Confidence 3444444 567889999999999999999997 7899999999987 897 999999999999999
Q ss_pred EeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEE
Q 032410 95 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLI 131 (141)
Q Consensus 95 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 131 (141)
|++++. ..+.+.+.+.+. |+.+.-..
T Consensus 328 l~~~~~---~~~~~~~~~~~~--------G~~~l~~~ 353 (358)
T TIGR01220 328 ILDAEA---DITHVRQRWETA--------GILPLPLT 353 (358)
T ss_pred EeCCch---hHHHHHHHHHHC--------CCeEeeee
Confidence 997643 234455555543 66655443
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.35 E-value=8.7e-12 Score=100.33 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEE
Q 032410 27 RAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 95 (141)
Q Consensus 27 r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial 95 (141)
+..|-+.+. +.++.++|..+|+..||++|+.+| +|.+|.+.+.|++ +|++|+|++|||.||+++.+
T Consensus 221 e~~~~mk~~--A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~ 297 (333)
T COG2605 221 EALHEMKAL--AYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFF 297 (333)
T ss_pred HHHHHHHHH--HHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEE
Confidence 344444443 368889999999999999999998 9999999999998 99999999999999999999
Q ss_pred eccccHHHHHHHHHHH
Q 032410 96 VDADRAEEAASYVRSE 111 (141)
Q Consensus 96 ~~~~~~~~~~~~l~~~ 111 (141)
|++.....+++++.++
T Consensus 298 ~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 298 CDPSKRNELARALEKE 313 (333)
T ss_pred eCccchHHHHHHHHHh
Confidence 9999999998888763
No 19
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=112.88 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=64.8
Q ss_pred HHHHHHH-HHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc
Q 032410 31 YFTENRR-VAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 98 (141)
Q Consensus 31 ~v~e~~R-v~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~ 98 (141)
.+.+... +.++.++|.+||++.||++|+.+| +|++|.|++.++ .|++|+|+||||+|||+|+++++
T Consensus 860 ~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~--~gAlGaKLTGAGGGGcvI~Lak~ 937 (974)
T PRK13412 860 LLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIK--DYTLGYKLPGAGGGGYLYMVAKD 937 (974)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH--cCCcEEEecccCcccEEEEEECC
Confidence 3444444 567889999999999999999987 799999999995 47999999999999999999954
Q ss_pred -ccHHHHHHHHHH
Q 032410 99 -DRAEEAASYVRS 110 (141)
Q Consensus 99 -~~~~~~~~~l~~ 110 (141)
...+++.+++++
T Consensus 938 ~~~a~~I~~~L~~ 950 (974)
T PRK13412 938 PGAAERIRKILTE 950 (974)
T ss_pred hhhHHHHHHHHHh
Confidence 556677777664
No 20
>PLN02451 homoserine kinase
Probab=99.32 E-value=2.3e-11 Score=101.24 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--C-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-cc
Q 032410 31 YFTENRRVAKGLEAWKSGNSQDFGKLISAS--G-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DR 100 (141)
Q Consensus 31 ~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s--h-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~ 100 (141)
.+.+..|+..++.+|.++|++.+++.|+.. | +|+++++++.+++ .|++|++|||+| +|+++|++. +.
T Consensus 254 ~v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--ptvfal~~~~~~ 330 (370)
T PLN02451 254 HVWNCSQAAALVAAILQGDAVLLGEALSSDKIVEPTRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PTAVAVIDDEEK 330 (370)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hheEEEEcCHHH
Confidence 344567778889999999999999998743 3 9999999999987 899999999999 899999985 46
Q ss_pred HHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 101 AEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 101 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
++++.+++++.|.+. .+..+.++++++ ..|+++
T Consensus 331 a~~i~~~l~~~~~~~-------~~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 331 GEEVGERMVEAFRKA-------GNLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHHHHHHHHHHHh-------cCCCceEEEeccCCCCeEE
Confidence 888889998888653 257899999999 569986
No 21
>PRK01212 homoserine kinase; Provisional
Probab=99.32 E-value=2.5e-11 Score=97.67 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-C-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccH
Q 032410 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISAS-G-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRA 101 (141)
Q Consensus 30 ~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s-h-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~ 101 (141)
+.+.+..|+..++.+|.++|++.+++.|++. | +|+++++.+.+.+ .|++|++|||+| +|+++|+++...
T Consensus 193 ~~~~~~~~~~~l~~al~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~~~~ 269 (301)
T PRK01212 193 DAVFNSSRAALLVAALYTGDYELAGRAMKDVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDKEDA 269 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhchhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEeccccH
Confidence 4566778888899999999999999998653 3 8999999999987 899999999998 999999987655
Q ss_pred HHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeeeC
Q 032410 102 EEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARVI 141 (141)
Q Consensus 102 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~ 141 (141)
+++.+.+++.| .. +..+.+++++| .+|+++.
T Consensus 270 ~~~~~~l~~~~-~~--------~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 270 EKVADALQKAF-LQ--------GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred HHHHHHHHHhh-cc--------CCCeEEEEeccCCCceEeC
Confidence 78888888766 21 77899999999 5698863
No 22
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.31 E-value=4.3e-11 Score=97.01 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-C-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc
Q 032410 28 AEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-G-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 99 (141)
Q Consensus 28 ~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s-h-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~ 99 (141)
..+++.+.+|+.-++.||.++|.+.+..+|+|. | .|.++++.+.+.+ .|+||+.+|||| +++++++++.
T Consensus 187 ~~daV~n~s~~a~lv~al~~~~~~l~~~~~~D~ihepyR~~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~~~~ 263 (299)
T COG0083 187 RKDAVFNLSRAALLVAALLEGDPELLRAMMKDVIHEPYRAKLVPGYAEVREAALE-AGALGATLSGAG--PTVFALADES 263 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHhccccchhhhhhhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEeccc
Confidence 468999999999999999999988888888887 5 9999999999997 999999999999 9999999887
Q ss_pred cHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeeeC
Q 032410 100 RAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARVI 141 (141)
Q Consensus 100 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~ 141 (141)
..+...+.+++.|.+ +..+.++++.. ++|++++
T Consensus 264 ~~e~~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 264 DAEKAAALLEELYEQ---------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred hhhHHHHHHHHHHHh---------CCcceEEEEeecCCcceEe
Confidence 445555555554444 67788888887 9997753
No 23
>PTZ00299 homoserine kinase; Provisional
Probab=99.25 E-value=5.3e-11 Score=98.02 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-C--------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-
Q 032410 29 EHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-G--------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA- 98 (141)
Q Consensus 29 ~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s-h--------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~- 98 (141)
.+++.+..|+..++.+|.++|++.+.. |.+. | +|+++++.+.+.+ .|++|+.|||+| +++++|++.
T Consensus 200 ~dav~n~~~~~~lv~al~~~d~~ll~~-~~D~lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG--PTv~al~~~~ 275 (336)
T PTZ00299 200 EDAVFNISRTSILVLALSTGDLRMLKS-CSDKLHEQQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG--PSVCALVGGR 275 (336)
T ss_pred HHHHHhhhHHHHHHHHHHhCCHHHHHh-chhcccCcccccccCccHHHHHHHHHH-CCCeEEEEEchh--hhheEEeccc
Confidence 478899999999999999999999965 4442 3 8999999999987 899999999999 999999973
Q ss_pred -----------ccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 99 -----------DRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 99 -----------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
+..+++.+++.+.|.+. +.++.++++++ .+|+++
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 276 HGDPLTQPREERKAESVAEAMIKAAEAV--------GVAGRVIITQPSDQGVHL 321 (336)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHc--------CCceEEEEccCCCCCcEE
Confidence 23678888999888763 89999999999 459987
No 24
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.13 E-value=7.8e-10 Score=89.36 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-C-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccH
Q 032410 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISAS-G-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRA 101 (141)
Q Consensus 30 ~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s-h-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~ 101 (141)
+.+.+..|+..++.+|.+++++.+...+++. | +|+++++.+.+++ .|++|++|||+| +|+++|++++..
T Consensus 193 ~~v~~~~~~~~l~~al~~~~~~l~~~~~~d~l~e~~~~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~~~~ 269 (302)
T TIGR00191 193 DLVFNLSHLAGLVHAIYQKKPDLGAIMMKDRIHQPYRESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADEEFA 269 (302)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHcccccchhhHhhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecchhh
Confidence 4566677788888999999876544444442 3 8999999999987 899999999999 999999987654
Q ss_pred HHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 102 EEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 102 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
.+.+..+.+.+.. .+.+++++++++ .+|+++
T Consensus 270 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 270 EQKEQDLLEVLHK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHHHHHHHHHHHh--------cCCCeEEEEcccCCCCeEe
Confidence 4433333333332 267899999999 559976
No 25
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.10 E-value=1.3e-09 Score=89.60 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CHH---HHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCC
Q 032410 26 KRAEHYFTENRRVAKGLEAWKSG----NSQ---DFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFR 89 (141)
Q Consensus 26 ~r~~~~v~e~~Rv~~~~~aL~~~----d~~---~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~G 89 (141)
+-+...+.+.. .+++..|.++ +.. .|.++|.-+| +|++|.++..+.+ .| +++|+||||+|
T Consensus 262 ~~i~~aid~is--~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH~~le~v~~~t~k-~g-i~sKLTGAGgG 337 (397)
T KOG1511|consen 262 KAIFDAIDEIS--LEAVWILQRENDEFSSPKEQKLEELIRINQDLLDALGVSHPSLELVCTTTRK-LG-IHSKLTGAGGG 337 (397)
T ss_pred HHHHHHHHHHH--HHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCCcHHHHHHHHHHHH-hC-cceecccCCCC
Confidence 34444444443 4566666632 222 5888866554 8999999999998 88 78899999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 90 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 90 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
||+|+|++++..++.+..++++.... ...+|.+.- +.|+++
T Consensus 338 Gc~itlL~~~~~qe~i~~~ke~L~s~----------gf~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 338 GCVITLLKPGTEQEQIDKWKEELESH----------GFEVFETELGGPGVSV 379 (397)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHhc----------CcceeeccCCCCceEE
Confidence 99999999998888888888887763 347788777 778776
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.98 E-value=6.3e-09 Score=83.90 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhC-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHH
Q 032410 35 NRRVAKGLEAWKSGNSQDFGKLISASG-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 106 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d~~~lg~lm~~sh-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~ 106 (141)
..++..++.++.++|++.+++.|+... +|+++++++.+++ .|++|++|||+| +++++|+++ +.++++.+
T Consensus 195 ~~~~~~~~~al~~~d~~~l~~~~~n~le~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG--~tv~~l~~~~~~~~~~~~ 271 (300)
T PRK03188 195 LGEPDPLLAALRAGDPAQLAPLLGNDLQAAALSLRPSLRRTLRAGEE-AGALAGIVSGSG--PTCAFLCADADSAVDVAA 271 (300)
T ss_pred cccHHHHHHHHHcCCHHHHHHHhhCcCHHHHHHhCchHHHHHHHHHH-CCCCEEEEEccc--cceEEEeCCHHHHHHHHH
Confidence 345678899999999999999886331 8999999999997 899999999999 889999976 33555554
Q ss_pred HHHHHHHhhchhhhhhcCCCceEEEeec-CCCeeeC
Q 032410 107 YVRSEYFELQPELASQLNADSAVLICKP-GDCARVI 141 (141)
Q Consensus 107 ~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~ 141 (141)
.+++ + |....++++++ ..|++|+
T Consensus 272 ~l~~----~--------g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 272 ALSG----A--------GVCRTVRVATGPVPGARVV 295 (300)
T ss_pred HHHh----c--------CcceeEEEeeccccceEec
Confidence 4443 2 56678888776 8898874
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.81 E-value=3.1e-08 Score=80.42 Aligned_cols=96 Identities=23% Similarity=0.397 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-------ChhHHHHHHHHh-hCCCceeEEEeCCCCCceeEEEeccc-cHH
Q 032410 32 FTENRRVAKGLEAWKSGNSQDFGKLISASG-------SEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD-RAE 102 (141)
Q Consensus 32 v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-------~pe~d~l~~~a~-~~~Ga~GarisGaG~GG~vial~~~~-~~~ 102 (141)
+.+..|...++.+|.++|++.++..|++.- .|++.++.+.+. + .|++|+.|||+| +|+++|++.. .++
T Consensus 205 ~~~~~~~~~l~~al~~~d~~~~~~~~~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a~ 281 (312)
T PRK02534 205 RRQALRSGPLLQAISAKDPPPIAQLLHNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQAE 281 (312)
T ss_pred cccccchhHHHHhhhccCHHHHHHhhhCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHHH
Confidence 444556667889999999999998876441 677777777676 6 899999999999 9999999863 567
Q ss_pred HHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 103 EAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 103 ~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
.+.+.+++.+.. ....++++++ ..|++|
T Consensus 282 ~~~~~l~~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 282 QALEQVREAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHHHHHHHHhcc----------CceEEEEEEecCCCcee
Confidence 777777654432 2347999998 669875
No 28
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.76 E-value=1.4e-07 Score=77.29 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHHHHHH--HHHHHhcCCHHHHHHHHHh--------hC----ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEec
Q 032410 32 FTENRRVAK--GLEAWKSGNSQDFGKLISA--------SG----SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 97 (141)
Q Consensus 32 v~e~~Rv~~--~~~aL~~~d~~~lg~lm~~--------sh----~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~ 97 (141)
+.+..|+.. ++.+|.++|++.|+..|++ -| .|.+..+++.+.. ++|+-|||+| +++++|++
T Consensus 214 v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~---a~g~~iSGsG--PTv~al~~ 288 (324)
T TIGR00144 214 VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS---APGAGMSSFG--PTVYAVTD 288 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh---ccCceecCCC--CeEEEEec
Confidence 466677644 5999999999999999997 23 6677776666653 4899999998 99999997
Q ss_pred cccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeeeC
Q 032410 98 ADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARVI 141 (141)
Q Consensus 98 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~ 141 (141)
++ .+++.+.+.+.|.. .+..+.++++++ ..|+++.
T Consensus 289 ~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 289 EK-PGNIAGAVADIFGP--------YGVYGRIIVTKARNRGAFII 324 (324)
T ss_pred Cc-hHHHHHHHHHHhhh--------CCCceEEEEEccCCCCCEeC
Confidence 64 77788888876654 278899999999 4699873
No 29
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.72 E-value=5.4e-08 Score=77.85 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh---C----ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHHHHH
Q 032410 38 VAKGLEAWKSGNSQDFGKLISAS---G----SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVR 109 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~s---h----~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l~ 109 (141)
+..++.+|.++|++.++.+|++. . +|+++++++.+++ .|++|++|||+| ||+++|++.. .++++.+.++
T Consensus 194 ~~~~~~~l~~~d~~~~~~~~~n~l~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~ 270 (286)
T PRK00128 194 TEKLIEAIEEGDYQGICANMGNVLENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIYNGLK 270 (286)
T ss_pred hHHHHHHHhcCCHHHHHHhccCcHHHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhH
Confidence 56788999999999999987632 2 8999999999987 899999999999 9999999763 4666666665
Q ss_pred H
Q 032410 110 S 110 (141)
Q Consensus 110 ~ 110 (141)
+
T Consensus 271 ~ 271 (286)
T PRK00128 271 G 271 (286)
T ss_pred h
Confidence 4
No 30
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.60 E-value=3.3e-07 Score=73.39 Aligned_cols=100 Identities=25% Similarity=0.246 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHhcC-C-HHHHHHHHHhh-C-------ChhHHHHHHHHhh--CCCceeEEEeCCCCCceeEEEec
Q 032410 30 HYFTENRRVAKGLEAWKSG-N-SQDFGKLISAS-G-------SEPLIQLNEILQR--APGVFGARFSGAGFRGCCLALVD 97 (141)
Q Consensus 30 ~~v~e~~Rv~~~~~aL~~~-d-~~~lg~lm~~s-h-------~pe~d~l~~~a~~--~~Ga~GarisGaG~GG~vial~~ 97 (141)
|.|.+..|...+..||..+ | ......+|.+. | +|.+..+...+.. .+|.+|..+|||| ++++|+..
T Consensus 240 d~V~NlqrlA~LttAl~~~p~n~~L~y~~m~DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAlat 317 (355)
T KOG1537|consen 240 DHVWNLQRLAALTTALLEGPDNVMLGYALMSDKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAG--PTALALAT 317 (355)
T ss_pred eeeecHHHHHHHHHHHhcCCCchhhhhhhhhccccCccccccCccHHHHHHhhCcccCCceeeEEecCCC--CeeEEEec
Confidence 7788999999999999988 4 44555678877 5 9999999998864 1499999999999 99999986
Q ss_pred cccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 98 ADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 98 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
++-+++.+++-+.|.+. |.++.+..++| -+||.+
T Consensus 318 -enf~eI~~~mv~~F~K~--------G~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 318 -ENFQEIGEKMVEAFWKV--------GHKCSVASLKPALDGAGV 352 (355)
T ss_pred -CcHHHHHHHHHHHHHhh--------CceeeeEeeccccCCcce
Confidence 67888999999999875 99999999998 666543
No 31
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.58 E-value=1.8e-07 Score=75.86 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhhC------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHH
Q 032410 37 RVAKGLEAWKSGNSQDFGKL-ISASG------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYV 108 (141)
Q Consensus 37 Rv~~~~~aL~~~d~~~lg~l-m~~sh------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l 108 (141)
+...++.+|.++|++.+... +|+-+ +|+++++.+.+.+ .|++|++|||+| +|++++++. ..++++.+.+
T Consensus 207 ~~~~~~~al~~~~~~~l~~~l~ndle~~~~~l~P~~~~i~~~~~~-~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l 283 (297)
T PRK14613 207 LSEDLISSLKVGDWVSLQGRLENDFEPVAFQLHPELGVLKDKFLE-FGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRL 283 (297)
T ss_pred cHHHHHHHHHcCCHHHHHHHhcccchHHHHHhCcHHHHHHHHHHH-cCCCEEEEEccc--cceEEEeCCHHHHHHHHHHH
Confidence 34567889999999988554 45543 9999999999987 899999999998 999999987 5677777777
Q ss_pred HHHHHh
Q 032410 109 RSEYFE 114 (141)
Q Consensus 109 ~~~y~~ 114 (141)
++.|..
T Consensus 284 ~~~~~~ 289 (297)
T PRK14613 284 RQEFSN 289 (297)
T ss_pred HHhhcc
Confidence 765553
No 32
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.53 E-value=2.2e-06 Score=69.25 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC---------------ChhHHHHHHHHhh
Q 032410 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG---------------SEPLIQLNEILQR 74 (141)
Q Consensus 10 ~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh---------------~pe~d~l~~~a~~ 74 (141)
++++.....-+|.+..+++.|.+. -.++.|+..+|++.||+.|++-| ++.+..+++.+.+
T Consensus 181 E~~if~~~~p~p~~~~~~ls~~vL-----m~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~ 255 (312)
T COG1907 181 EVDIFKKYCPVPLEEVGELSHRVL-----MKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE 255 (312)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-----HHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH
Confidence 455655556688888788888776 68889999999999999988764 8888999999987
Q ss_pred CCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 75 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 75 ~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
+ +||+-+| .||+++.+++++....+++..+.+.+.++ +....+++++| ..||.+
T Consensus 256 -~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 256 -A-AYGAGQS--SWGPTVYGIVDSREAGSVVRKLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred -h-ccccccc--ccCCEEEEeccccccchHHHHHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 5 6877775 46699999999988888888888777764 89999999999 889876
No 33
>PRK01123 shikimate kinase; Provisional
Probab=98.46 E-value=2e-06 Score=68.95 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhC-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHH
Q 032410 39 AKGLEAWKSGNSQDFGKLISASG-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 111 (141)
Q Consensus 39 ~~~~~aL~~~d~~~lg~lm~~sh-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~ 111 (141)
.++.+++.++|+. .+|+.++ .|.. +++..+++ .|++|+++||+| ||+++|++++..+++.+++++.
T Consensus 194 d~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~-~~i~~a~~-~Ga~ga~lSGaG--ptv~al~~~~~~~~v~~~l~~~ 266 (282)
T PRK01123 194 DMAFELALDGEYF---KAMTLNGLLYSSALGFPT-EPALEALE-AGAVGVGLSGTG--PSYVAIVDEEDPEEVKEAWEKY 266 (282)
T ss_pred HHHHHHHhhccHH---HHHHhCCchhhhhhCCCh-HHHHHHHH-CCCeEEEEecCC--CeEEEEeCCCCHHHHHHHHHhC
Confidence 3444555566764 4444444 5664 44555776 899999999987 9999999888888877777752
Q ss_pred HHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 112 YFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 112 y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
++++++++ ..|+++
T Consensus 267 ---------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 267 ---------------GKVIVTKINNEGARI 281 (282)
T ss_pred ---------------CEEEEeeecCCCcee
Confidence 46888998 788876
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.44 E-value=5.8e-07 Score=72.23 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHhhC------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHH
Q 032410 35 NRRVAKGLEAWKS-GNSQDFGKLISASG------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 106 (141)
Q Consensus 35 ~~Rv~~~~~aL~~-~d~~~lg~lm~~sh------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~ 106 (141)
..++..++.++.. ++++.++.++|+-+ .|+++++.+.+.+ .|++|+.|||+| +|+++|+++ ..++++.+
T Consensus 192 ~~~~~~l~~~l~~~~~~~l~~~~~nD~e~~~~~l~p~l~~v~~~~~~-~Galg~~lSGSG--ptv~al~~~~~~a~~i~~ 268 (287)
T PRK14616 192 RPDLKTLVRRLCLDGDTSVLPAFENDFESAVFDHYPAVRKVKDDLLE-AGSFFASLSGSG--SAVFGLFENEADAEAAAE 268 (287)
T ss_pred CchHHHHHHHHhcCCHHHHHHHhcCccHHHHHHhChHHHHHHHHHHh-CCCCeEEEeccc--ccceEEeCCHHHHHHHHH
Confidence 4455566666655 56677776666332 8999999999987 899999999999 999999987 56788888
Q ss_pred HHHHHHHhh
Q 032410 107 YVRSEYFEL 115 (141)
Q Consensus 107 ~l~~~y~~~ 115 (141)
.+++.|..+
T Consensus 269 ~l~~~~~~~ 277 (287)
T PRK14616 269 MMRARYRTN 277 (287)
T ss_pred HhHHhCccc
Confidence 888777763
No 35
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.35 E-value=1.7e-06 Score=68.89 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhC-----ChhH-HHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHH
Q 032410 36 RRVAKGLEAWKSGNSQDFGKLISASG-----SEPL-IQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 109 (141)
Q Consensus 36 ~Rv~~~~~aL~~~d~~~lg~lm~~sh-----~pe~-d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~ 109 (141)
..+.++.++++.+|+. .+|+.+| .+.+ +.+++.+++ .|++|++|||+| ||+++|+++. +++.++|+
T Consensus 181 ~~~~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~~i~~a~~-~Galga~lSGaG--~sv~aL~~~~--~~v~~~~~ 252 (261)
T TIGR01920 181 PVVEEAFNLALRGEYL---KAMVLNGVAYATALGYPLEPASKALE-AGAAAAGLSGKG--PSYFALTEDP--EEAAEALM 252 (261)
T ss_pred hHHHHHHHHHhhCCHH---HHHhhChHHhHHhhCCChHHHHHHHH-cCCcEEeecCCC--CeEEEEeCCH--HHHHHHHH
Confidence 4456667888888876 7777776 2222 456677887 899999999986 9999998755 56666665
Q ss_pred H
Q 032410 110 S 110 (141)
Q Consensus 110 ~ 110 (141)
+
T Consensus 253 ~ 253 (261)
T TIGR01920 253 E 253 (261)
T ss_pred h
Confidence 4
No 36
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.28 E-value=4.2e-06 Score=67.14 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=47.2
Q ss_pred HHHhcCCHHHHHHHHHhhCChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecccc-HHHHHHHHHH
Q 032410 43 EAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 110 (141)
Q Consensus 43 ~aL~~~d~~~lg~lm~~sh~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~-~~~~~~~l~~ 110 (141)
.++..+|++.+. .+.+|+++++++.+++ .|++|++|||+| ||+++|++++. ++.+.+.+++
T Consensus 207 ~~~~~ndle~~~----~~~~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 207 CALLSNDLESVT----IGRFPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred hhhcccCcHHHH----HhcChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 456678888664 2225999999999997 899999999998 99999998754 5555555554
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.21 E-value=2.4e-06 Score=68.34 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--C-ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHHHHHH
Q 032410 36 RRVAKGLEAWKSGNSQDFGKLISAS--G-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 110 (141)
Q Consensus 36 ~Rv~~~~~aL~~~d~~~lg~lm~~s--h-~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l~~ 110 (141)
.++..++.+|.++|...+...|... + +|+++++.+.+.+ .|++|++|||+| +|+++|+++. .++.+.+.+++
T Consensus 188 ~~~~~l~~~l~~~d~~~~~n~l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~~~l~~ 263 (276)
T PRK14612 188 LDVEAILAALARGEEPPYWNSLEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAAAALRA 263 (276)
T ss_pred ccHHHHHHHHHhcccccccCCcHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHHHHhHh
Confidence 3577788888888744333222222 1 8999999999987 899999999999 9999999764 36666666655
No 38
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=98.19 E-value=1.1e-05 Score=65.28 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHH-HHhhC------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecccc-HHHHHHHHHHHH
Q 032410 41 GLEAWKSGNSQDFGKL-ISASG------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSEY 112 (141)
Q Consensus 41 ~~~aL~~~d~~~lg~l-m~~sh------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~-~~~~~~~l~~~y 112 (141)
++.++..++++.+... .|+-. +|+++++.+.+.+ .|++|++|||+| +|+++|++... +..+.+.+++.+
T Consensus 199 l~~~~~~~~~~~~~~~~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~~~~ 275 (293)
T TIGR00154 199 WLKKISLECLQLLDSNGLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSGSG--ACVFALFDMESEAEQVLEQAPEWL 275 (293)
T ss_pred HHHHHhhccHHHHhhhhcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhHHHh
Confidence 4455555555544332 22211 6999999999987 899999999998 99999998643 566666555444
Q ss_pred H
Q 032410 113 F 113 (141)
Q Consensus 113 ~ 113 (141)
.
T Consensus 276 ~ 276 (293)
T TIGR00154 276 N 276 (293)
T ss_pred h
Confidence 3
No 39
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=97.98 E-value=0.00021 Score=61.32 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHh
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.|++-+|++.+.+..|++|++.+|||+|-|+++|+..+. ++++.+.+.|..
T Consensus 381 p~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~~ 431 (454)
T TIGR01219 381 PESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWSS 431 (454)
T ss_pred CHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHhh
Confidence 889999999998888999999999999999999986643 245556666653
No 40
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.94 E-value=3.2e-05 Score=62.62 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=39.0
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 110 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l~~ 110 (141)
+|+++++.+.+.+ .|++|++|||+| +|+++|+++ ..++++.+++++
T Consensus 240 ~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 240 HPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred ChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 7999999999987 899999999999 999999875 346666666654
No 41
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.75 E-value=9.8e-05 Score=59.60 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=38.6
Q ss_pred ChhHHHHHHHHhhCC-CceeEEEeCCCCCceeEEEeccc-cHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 110 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~-Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l~~ 110 (141)
+|+++++.+.+.+ . |++|+.|||+| +|+++|+++. .++++.+.+++
T Consensus 230 ~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 230 APVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred CcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 6999999999987 8 99999999999 9999999763 36666666654
No 42
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.38 E-value=0.0013 Score=52.66 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=53.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHhh-C------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeE
Q 032410 22 PTLAKRAEHY-FTENRRVAKGLEAWKSGNSQDFGKLISAS-G------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 93 (141)
Q Consensus 22 ~~~~~r~~~~-v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s-h------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vi 93 (141)
.+.++++..- +.+..+...++.++.++|++.++..+.+. | .|++.++.+.... .| +|+.|||+| ++++
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf 249 (275)
T PRK14611 174 GRVYSKVTKQILTNKEDLNIIISLLREGEEKKIEEVIENTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVY 249 (275)
T ss_pred HHHHHhcchhhccCcchHHHHHHHHHcCCHHHHHHhcCCcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccce
Confidence 4455444322 33456677788999999999887764433 4 8999999887654 45 599999999 9999
Q ss_pred EEecc
Q 032410 94 ALVDA 98 (141)
Q Consensus 94 al~~~ 98 (141)
+++++
T Consensus 250 ~l~~~ 254 (275)
T PRK14611 250 VFGKP 254 (275)
T ss_pred eEeCC
Confidence 99944
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.29 E-value=0.0007 Score=54.52 Aligned_cols=47 Identities=30% Similarity=0.540 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 110 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l~~ 110 (141)
+|++.++.+...+..|++++.|||+| +|+++++++ ..++++.+.+++
T Consensus 222 ~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 222 VPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred ChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhh
Confidence 79999999977653588999999999 999999876 445666555554
No 44
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.22 E-value=0.00028 Score=56.45 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 98 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~ 98 (141)
+|+++++.+.+++ .|++|++|||+| +|+++++++
T Consensus 219 ~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 219 YPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred ChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECC
Confidence 5999999998887 899999999998 999999975
No 45
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.92 E-value=0.016 Score=46.43 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHhhCChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHHHHHHH
Q 032410 47 SGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSE 111 (141)
Q Consensus 47 ~~d~~~lg~lm~~sh~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l~~~ 111 (141)
.+|++.... . ..|+++++.+.+.+ .|+ +.|||+| +|+++|+++. .++.+.+.+++.
T Consensus 206 ~Ndle~~~~---~-~~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~ 262 (271)
T PRK00343 206 RNDCEPVVR---K-RYPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEW 262 (271)
T ss_pred cCCHHHHHH---H-hChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhh
Confidence 456666553 2 25999999998876 787 8899999 9999999764 355555555543
No 46
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=95.63 E-value=0.16 Score=41.50 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=58.4
Q ss_pred HHHHHHH-HHHHHHHHHhcCCHHHHHHHHH-hh---C-------------ChhHHHHHHH---HhhCCCceeEEEeCCCC
Q 032410 30 HYFTENR-RVAKGLEAWKSGNSQDFGKLIS-AS---G-------------SEPLIQLNEI---LQRAPGVFGARFSGAGF 88 (141)
Q Consensus 30 ~~v~e~~-Rv~~~~~aL~~~d~~~lg~lm~-~s---h-------------~pe~d~l~~~---a~~~~Ga~GarisGaG~ 88 (141)
..+.+.. ++..++.++.++|++.||++.- ++ | .|+.-.+++. .++ .|.-.....=||
T Consensus 204 ~~v~~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG- 281 (305)
T TIGR01240 204 EWIEHVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG- 281 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC-
Confidence 4444444 5889999999999999999843 33 5 4444444333 454 576666777888
Q ss_pred CceeEEEeccccHHHHHHHHHHHH
Q 032410 89 RGCCLALVDADRAEEAASYVRSEY 112 (141)
Q Consensus 89 GG~vial~~~~~~~~~~~~l~~~y 112 (141)
+.+..|+.+++.+.+.+.+.+.|
T Consensus 282 -pNv~vl~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 282 -PNVKVLYLAENLSKLFEFIYKLF 304 (305)
T ss_pred -CCEEEEEccccHHHHHHHHHHhc
Confidence 99999999999999988877654
No 47
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=95.27 E-value=0.036 Score=45.16 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecccc-HHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 110 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~-~~~~~~~l~~ 110 (141)
.|++........+ .|+.+++|||+| +|++++++... ++.+.+.+.+
T Consensus 225 ~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 225 YPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred ChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 4999887666665 688999999999 99999998854 5555555544
No 48
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.54 E-value=0.085 Score=42.89 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHhhCCCc-ee--EEEeCCCCCceeEEEeccc-cHHHHH-HHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGV-FG--ARFSGAGFRGCCLALVDAD-RAEEAA-SYVRSEYF 113 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga-~G--arisGaG~GG~vial~~~~-~~~~~~-~~l~~~y~ 113 (141)
.|++.++.+...+ .|+ +| ++|||+| +|++++.+.. .++.+. ..+++.|.
T Consensus 206 ~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 206 RLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred ChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 5999999998876 443 24 8899999 9999999773 355554 56655543
No 49
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=92.75 E-value=0.91 Score=40.25 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhh-CCCceeEEEeCCCCC
Q 032410 26 KRAEHYFTENRR----VAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQR-APGVFGARFSGAGFR 89 (141)
Q Consensus 26 ~r~~~~v~e~~R----v~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~-~~Ga~GarisGaG~G 89 (141)
.|+.....+... +.+..+.+.+|.++.+|+++...| -+...++.+.... .+| --+-..|||+|
T Consensus 821 ar~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGG 899 (948)
T KOG4644|consen 821 ARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGG 899 (948)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCC
Confidence 555555555444 446667888999999999999886 3455677776532 123 22347899999
Q ss_pred ceeEEEeccccHHHHHHH
Q 032410 90 GCCLALVDADRAEEAASY 107 (141)
Q Consensus 90 G~vial~~~~~~~~~~~~ 107 (141)
|++.-+.++...++.+++
T Consensus 900 GFiYLl~kEpqqkeaiEa 917 (948)
T KOG4644|consen 900 GFIYLLIKEPQQKEAIEA 917 (948)
T ss_pred cEEEEEecCCCCHHHHHH
Confidence 999999988765554443
No 50
>PLN02407 diphosphomevalonate decarboxylase
Probab=92.61 E-value=1.5 Score=36.56 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH-HHhh---C-------------ChhHHHHHH---HHhhCCCc-eeEEEeCCCCCceeE
Q 032410 35 NRRVAKGLEAWKSGNSQDFGKL-ISAS---G-------------SEPLIQLNE---ILQRAPGV-FGARFSGAGFRGCCL 93 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d~~~lg~l-m~~s---h-------------~pe~d~l~~---~a~~~~Ga-~GarisGaG~GG~vi 93 (141)
..++.++.+|++++|++.||++ |.++ | .|+.-.+++ ..++..|. -.....=|| +.+.
T Consensus 234 ~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAG--PNv~ 311 (343)
T PLN02407 234 PKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAG--PNAV 311 (343)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCC--CCEE
Confidence 3567899999999999999998 4444 5 444433433 34432364 345667888 9999
Q ss_pred EEeccccHHH-HHHHHHHHHH
Q 032410 94 ALVDADRAEE-AASYVRSEYF 113 (141)
Q Consensus 94 al~~~~~~~~-~~~~l~~~y~ 113 (141)
.|+.+.+.++ +++.+.+.|.
T Consensus 312 vl~~~~~~~~~v~~~~~~~~~ 332 (343)
T PLN02407 312 LIALNRKVAAQLLQRLLYYFP 332 (343)
T ss_pred EEEChhhhHHHHHHHHHHhcC
Confidence 9998888886 8877776554
No 51
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=92.54 E-value=2.4 Score=35.35 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHhh---C------Ch----------hHHHHHHHHhhCCC-ceeE
Q 032410 23 TLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKL-ISAS---G------SE----------PLIQLNEILQRAPG-VFGA 81 (141)
Q Consensus 23 ~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~l-m~~s---h------~p----------e~d~l~~~a~~~~G-a~Ga 81 (141)
-+..|+.++|- .|..+|.+++.+.|++.|.++ |.+| | .| .+-.+++......| ...+
T Consensus 223 L~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vA 300 (395)
T KOG2833|consen 223 LLQHRIESVVP--QRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVA 300 (395)
T ss_pred HHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEE
Confidence 35578888876 688999999999999999997 8888 4 22 23344444332233 4566
Q ss_pred EEeCCCCCceeEEEeccccHHHHHHHHHHHHHh
Q 032410 82 RFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 82 risGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
...-||=..|+|++ ++++..+.+.+.+.|..
T Consensus 301 YTFDAGPNAvl~~l--~e~~~~~l~~~~~~f~~ 331 (395)
T KOG2833|consen 301 YTFDAGPNAVLIVL--EENVSQLLAAVLKVFPP 331 (395)
T ss_pred EEecCCCceEEEEh--hhhHHHHHHHHHHhcCC
Confidence 77889955566554 55666777777665543
No 52
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.43 E-value=0.81 Score=37.03 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=38.7
Q ss_pred HHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 68 LNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 68 l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
+...+.+ .|+.++-+||-| ++.++|++++ +++.+.|.+. -.++++++ +.+++.
T Consensus 222 ~~~~ale-~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~~---------------G~V~~t~~~~~~~~~ 275 (278)
T COG1685 222 PALKALE-AGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSKI---------------GDVIETRNVGERARD 275 (278)
T ss_pred HHHHHHh-cccceeccCCCC--CceEEEecCc--HHHHHHHHhC---------------CeEEEEecCCCCcee
Confidence 3455666 899999999999 9999999776 5565555532 35788877 666653
No 53
>PRK05905 hypothetical protein; Provisional
Probab=90.21 E-value=0.33 Score=38.84 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEe
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 96 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~ 96 (141)
+|++.++.+...+ .|+ .++|||+| +|++++-
T Consensus 223 ~P~i~~~~~~l~~-~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 223 YPNLLYKYNELLN-DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred ChHHHHHHHHHHh-CCC-CEEEeCcc--hhheEEe
Confidence 5999999998876 686 89999999 9998864
No 54
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=84.42 E-value=19 Score=29.95 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-hh---C-------------ChhHHHHHHHH---hhCCCceeEEEeC
Q 032410 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLIS-AS---G-------------SEPLIQLNEIL---QRAPGVFGARFSG 85 (141)
Q Consensus 26 ~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~-~s---h-------------~pe~d~l~~~a---~~~~Ga~GarisG 85 (141)
.|+.|..... ..+..++.++|++.|+++.. ++ | .|+.-++.+.+ ++. |-...-.+=
T Consensus 208 ~w~~~~~~~~---~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~~~fT~D 283 (329)
T COG3407 208 AWLEHSEEDL---EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNAVYFTMD 283 (329)
T ss_pred HHHHHHHHhH---HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCceEEEEc
Confidence 5556655543 58889999999999999844 33 5 44444444444 332 323345555
Q ss_pred CCCCceeEEEeccccHHHHHHHHHHHHH
Q 032410 86 AGFRGCCLALVDADRAEEAASYVRSEYF 113 (141)
Q Consensus 86 aG~GG~vial~~~~~~~~~~~~l~~~y~ 113 (141)
|| +.+..++.+.+..++.+.+.+.+.
T Consensus 284 aG--PnV~v~~~~~~l~~~~~~~~~~~~ 309 (329)
T COG3407 284 AG--PNVKVITLEENLIDLLEILKTLEC 309 (329)
T ss_pred CC--CceEEEEecccHHHHHHHHhhccc
Confidence 66 999999999999988877775444
No 55
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=74.30 E-value=16 Score=22.47 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHH
Q 032410 63 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 110 (141)
Q Consensus 63 pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~ 110 (141)
..+..|.+++.+ .|.--.|+|... +..|--++.++++.+.+.+.+
T Consensus 24 ~~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 356788888887 776667999988 888888999999999888874
No 56
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=60.11 E-value=72 Score=25.73 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCC-----HHHHHHHHHhhC---ChhHHHHHHHHhhCCCceeE--EEeCCCCCceeEEEeccccHHHH
Q 032410 35 NRRVAKGLEAWKSGN-----SQDFGKLISASG---SEPLIQLNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEA 104 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d-----~~~lg~lm~~sh---~pe~d~l~~~a~~~~Ga~Ga--risGaG~GG~vial~~~~~~~~~ 104 (141)
++|+..+.+-|.++- +..|....+... +..+.-+.+...+ .| +|- .+.||.+|=-.+-...++.+.++
T Consensus 4 ~~r~~~~t~~l~~~p~~~~~l~~f~~~~~~aks~ised~~i~~~~~~~-~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~ 81 (268)
T TIGR01743 4 SGRLVDLTNYLITNPNKLIPLNFFSERYESAKSSISEDIVIIKETFEK-FG-IGKLLTVPGAAGGVKYIPKMSQAEAEEF 81 (268)
T ss_pred hHHHHHHHHHHHhCCCceEcHHHHHHHhccccchhhhhHHHHHHHHHh-cC-CceEEEeCCCCCCeEEEeCCCHHHHHHH
Confidence 567777777777663 555555555444 5566666666654 66 555 67777766444555555568888
Q ss_pred HHHHHHHHHh
Q 032410 105 ASYVRSEYFE 114 (141)
Q Consensus 105 ~~~l~~~y~~ 114 (141)
.+.+.+.+.+
T Consensus 82 ~~~l~~~l~~ 91 (268)
T TIGR01743 82 VEELCQSLSE 91 (268)
T ss_pred HHHHHHHHHH
Confidence 8888887775
No 57
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=57.74 E-value=35 Score=23.86 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCceeEEEeCCCCCc-------eeEEEeccccHHHHHHHHHHHHHhh
Q 032410 65 LIQLNEILQRAPGVFGARFSGAGFRG-------CCLALVDADRAEEAASYVRSEYFEL 115 (141)
Q Consensus 65 ~d~l~~~a~~~~Ga~GarisGaG~GG-------~vial~~~~~~~~~~~~l~~~y~~~ 115 (141)
.+.+.+...+ +|....|++-.| | +++.=+++++.+++++.+++.++++
T Consensus 13 a~~l~~~L~~-~g~~~TkLsstG--GFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 13 ADDLSDALNE-NGFRVTKLSSTG--GFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHH-TT--EEEEEEEE--TTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred HHHHHHHHHH-CCceEEEEeccc--ceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 3567777776 898888998877 4 4555577788999999999988865
No 58
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.27 E-value=73 Score=25.96 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhh------C--ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecccc----HHHHHHH
Q 032410 40 KGLEAWKSGNSQDFGKLISAS------G--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR----AEEAASY 107 (141)
Q Consensus 40 ~~~~aL~~~d~~~lg~lm~~s------h--~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~----~~~~~~~ 107 (141)
.+-.|+..+|...+|+.-+-| | -|.+++|.+++.+ .+++|--..-+| +++.|.=+.. -.+..-.
T Consensus 201 ~v~~A~~~~~~~~lG~AAT~SAv~~Q~~LPK~~~~~lL~l~e~-~~~~Gv~VAHSG---tmlGli~D~~~~~d~~k~~~~ 276 (293)
T COG4542 201 LVEKALKVGDPKLLGEAATLSAVKNQDRLPKPGLNELLRLVEE-TCAIGVIVAHSG---TMLGLIYDRKYALDPRKLRVV 276 (293)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHhhccccCchhHHHHHHHHHH-hcccceEEeccC---ceEEeeeccccccchHHHHHH
Confidence 444788889999999876555 3 6778999998876 788888887775 7777765433 2233334
Q ss_pred HHHHHHh
Q 032410 108 VRSEYFE 114 (141)
Q Consensus 108 l~~~y~~ 114 (141)
+++.|..
T Consensus 277 l~r~~~~ 283 (293)
T COG4542 277 LARNYKT 283 (293)
T ss_pred HHHhhhc
Confidence 4455554
No 59
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=53.36 E-value=49 Score=21.36 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCC-----HHHHHHHHHhhC---ChhHHHHHHHHhhCCCceeE--EEeCCCCC
Q 032410 35 NRRVAKGLEAWKSGN-----SQDFGKLISASG---SEPLIQLNEILQRAPGVFGA--RFSGAGFR 89 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d-----~~~lg~lm~~sh---~pe~d~l~~~a~~~~Ga~Ga--risGaG~G 89 (141)
++|+..+.+-|..+- +..|...++... +..++-+.+...+ .| +|- .++|+++|
T Consensus 3 seRlv~it~~L~~~P~~lisL~~Fae~f~~AKSsISEDl~iik~~~~~-~g-~G~ieT~~GaaGG 65 (70)
T PF09182_consen 3 SERLVAITKYLLENPNKLISLTYFAERFGAAKSSISEDLSIIKETFEK-EG-LGRIETVPGAAGG 65 (70)
T ss_dssp HHHHHHHHHHHHTSTT--EEHHHHHHHHT--HHHHHHHHHHHHHHHHH-TT-SEEEEEE-STT-E
T ss_pred hhHHHHHHHHHHcCCcceEcHHHHHHHhcccccchHHHHHHHHHHHHH-cC-CceEEEecCCCCC
Confidence 567777887777763 556666665554 5666666666655 67 565 66777744
No 60
>PRK09213 pur operon repressor; Provisional
Probab=52.00 E-value=1.1e+02 Score=24.74 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCC-----HHHHHHHHHhhC---ChhHHHHHHHHhhCCCceeE--EEeCCCCCceeEEEeccccHHH
Q 032410 34 ENRRVAKGLEAWKSGN-----SQDFGKLISASG---SEPLIQLNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEE 103 (141)
Q Consensus 34 e~~Rv~~~~~aL~~~d-----~~~lg~lm~~sh---~pe~d~l~~~a~~~~Ga~Ga--risGaG~GG~vial~~~~~~~~ 103 (141)
-++|+..+.+-|.++- +..|....+... +..+.-+.+...+ .| +|- .+.||.+|=-.+-....+++.+
T Consensus 5 r~~r~~~~~~~l~~~p~~~~~l~~f~~~~~~aks~ised~~i~~~~~~~-~~-~g~~~t~~ga~ggv~~~p~~~~~~a~~ 82 (271)
T PRK09213 5 RSERLVDMTKYLLENPNKLISLTFFAERYGAAKSSISEDLVIIKETFEK-QG-IGTLETVPGAAGGVKYIPSISEEEARE 82 (271)
T ss_pred hhhHHHHHHHHHHhCCCceEcHHHHHHHhccccchhhhhHHHHHHHHHh-cC-CceEEEeCCCCCCeEEEcCCCHHHHHH
Confidence 3567777777777663 555555555444 5566666666654 56 555 6777775544444444456777
Q ss_pred HHHHHHHHHHh
Q 032410 104 AASYVRSEYFE 114 (141)
Q Consensus 104 ~~~~l~~~y~~ 114 (141)
+...|.+...+
T Consensus 83 ~~~~L~~~L~~ 93 (271)
T PRK09213 83 FVEELCERLSE 93 (271)
T ss_pred HHHHHHHHHHh
Confidence 87777776654
No 61
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=51.31 E-value=13 Score=29.55 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEec
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 97 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~ 97 (141)
+|++.++.+ .++.|||+| +|++++-+
T Consensus 230 ~P~i~~~~~--------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 230 YPALKDYLG--------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred CHHHHHHhc--------CCcEEeCcC--cceEEEee
Confidence 588887733 346799999 99998743
No 62
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=45.34 E-value=1.8e+02 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCCceeEEEeCCCCCceeEEEeccc
Q 032410 75 APGVFGARFSGAGFRGCCLALVDAD 99 (141)
Q Consensus 75 ~~Ga~GarisGaG~GG~vial~~~~ 99 (141)
..|++++-+-|+|+|-.+.+|..+.
T Consensus 283 l~gvl~~lipgaGggdaif~l~~~~ 307 (337)
T COG3890 283 LLGVLCDLIPGAGGGDAIFLLYRPN 307 (337)
T ss_pred ccCceEeecccCCCCceEEEEeccc
Confidence 4899999999999999998887653
No 63
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.35 E-value=78 Score=19.69 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=9.5
Q ss_pred cCCCCHHHHHHHhcccC
Q 032410 5 LCNVEEEVYEAHKNELE 21 (141)
Q Consensus 5 Lr~v~~~~~~~~~~~l~ 21 (141)
|..++.++|..++..|.
T Consensus 18 Ls~lSv~EL~~RIa~L~ 34 (59)
T PF06698_consen 18 LSLLSVEELEERIALLE 34 (59)
T ss_pred chhcCHHHHHHHHHHHH
Confidence 45555666665555444
No 64
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=40.96 E-value=1.4e+02 Score=23.63 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 032410 38 VAKGLEAWKSGNSQDFGKLISAS 60 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~s 60 (141)
+.++..|+.+||++.+..++.+.
T Consensus 177 v~~f~~A~~~gD~~~l~~Lla~D 199 (293)
T PRK09636 177 VEAFFAALASGDLDALVALLAPD 199 (293)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhC
Confidence 55677777777777777777665
No 65
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=39.20 E-value=1.1e+02 Score=24.00 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=52.9
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh----------------C-------ChhHHHHH
Q 032410 13 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS----------------G-------SEPLIQLN 69 (141)
Q Consensus 13 ~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~s----------------h-------~pe~d~l~ 69 (141)
+..++..+++.-.+++++.=.+..++.+++..+...-++.|-+.+.+. | .|.+|+|.
T Consensus 7 ~~~~~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk 86 (224)
T KOG1659|consen 7 FKKYKTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK 86 (224)
T ss_pred hhhhhccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence 455667788888899999999999999999999998888886654332 2 77889999
Q ss_pred HHHhhCCCceeE
Q 032410 70 EILQRAPGVFGA 81 (141)
Q Consensus 70 ~~a~~~~Ga~Ga 81 (141)
+....+++.-++
T Consensus 87 ~~v~~vpd~~~~ 98 (224)
T KOG1659|consen 87 EVVEKVPDRQQA 98 (224)
T ss_pred HHHHhcCCCccc
Confidence 977666664444
No 66
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.88 E-value=42 Score=27.50 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~ 113 (141)
+|.+|.|.+.+.+ .|+.|+|+ -|+|-+..+..+.+.+..+. .|.
T Consensus 121 ~~GLD~Ll~R~~~-y~~~GaKw------RsViki~~~~~I~~na~qla-ryA 164 (296)
T PRK05377 121 IPNLDDLLDRAVE-KGIFGTKM------RSVIKEANEQGIAAVVAQQF-EVA 164 (296)
T ss_pred CCCHHHHHHHHHH-hCCCccce------eeeecCCCHHHHHHHHHHHH-HHH
Confidence 7899999999997 89999887 68888765445566655554 444
No 67
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=37.79 E-value=1e+02 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 032410 38 VAKGLEAWKSGNSQDFGKLISAS 60 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~s 60 (141)
+..+++|+.+||++.|..+|.+.
T Consensus 170 ~~~f~~a~~~gD~~~l~~lL~~d 192 (281)
T TIGR02957 170 LERFVEAAQTGDLDGLLELLAED 192 (281)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhc
Confidence 66778888888888888887766
No 68
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=33.36 E-value=2e+02 Score=21.27 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHhcccCHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 032410 11 EVYEAHKNELEPT-LAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISA 59 (141)
Q Consensus 11 ~~~~~~~~~l~~~-~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~ 59 (141)
+||....+.+|-+ +..-+.+++.+-.-+.++++-+.+.++..+..-+..
T Consensus 6 ~d~~dfl~lIp~~~i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~ 55 (179)
T PF06757_consen 6 EDFQDFLDLIPMEEIQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEA 55 (179)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHc
Confidence 5666777777744 555556677777788888888888776655554443
No 69
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=33.26 E-value=45 Score=27.94 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=13.9
Q ss_pred EEeCCCCCceeE--EEeccccH
Q 032410 82 RFSGAGFRGCCL--ALVDADRA 101 (141)
Q Consensus 82 risGaG~GG~vi--al~~~~~~ 101 (141)
-++|+|.||.+| .+|++..+
T Consensus 39 e~~~gG~gg~vi~AVmVDpgav 60 (387)
T COG3064 39 EASGGGGGGSVIDAVMVDPGAV 60 (387)
T ss_pred cccCCCCCcceeeeeEeCcHHH
Confidence 457788888888 56666543
No 70
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.82 E-value=50 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHhcccCHHHHHHHHHHHH
Q 032410 13 YEAHKNELEPTLAKRAEHYFT 33 (141)
Q Consensus 13 ~~~~~~~l~~~~~~r~~~~v~ 33 (141)
|...++.|+|++|.|+..+|+
T Consensus 3 ~~q~In~mtPEiYQrL~~AvE 23 (90)
T COG3139 3 LDQIINSMTPEIYQRLSTAVE 23 (90)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 566788999999999988876
No 71
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=31.73 E-value=44 Score=22.77 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.0
Q ss_pred HHHhcccCHHHHHHHHHHHH
Q 032410 14 EAHKNELEPTLAKRAEHYFT 33 (141)
Q Consensus 14 ~~~~~~l~~~~~~r~~~~v~ 33 (141)
...++.|+|++|.|++..|.
T Consensus 2 ~~li~~mtPevY~rL~~AVE 21 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVE 21 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHH
Confidence 34568899999999888775
No 72
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=31.61 E-value=83 Score=26.94 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=32.4
Q ss_pred HHHHHHhc-CCHHHHHHHHHhhC----ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHH
Q 032410 40 KGLEAWKS-GNSQDFGKLISASG----SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 110 (141)
Q Consensus 40 ~~~~aL~~-~d~~~lg~lm~~sh----~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~ 110 (141)
.+++.|+. +.-..|.-+.+++. +..-.+-++..+++.|+|. +++| -.-+|=+.+.+++.+++++.+
T Consensus 324 ~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~---v~sG--Ri~vaGl~~~ni~~va~ai~~ 394 (396)
T COG1448 324 ALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYL---VASG--RINVAGLNTSNIDYVAKAIAA 394 (396)
T ss_pred HHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEE---ecCC--eeeeccCChhhHHHHHHHHHh
Confidence 44555555 22223344444543 1111222334444467653 4445 333344667788888877764
No 73
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=31.57 E-value=1.1e+02 Score=20.69 Aligned_cols=38 Identities=5% Similarity=0.107 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHH---HHHHHHHHHHHHhcCCHHHHHHHH
Q 032410 20 LEPTLAKRAEHYFT---ENRRVAKGLEAWKSGNSQDFGKLI 57 (141)
Q Consensus 20 l~~~~~~r~~~~v~---e~~Rv~~~~~aL~~~d~~~lg~lm 57 (141)
|.|.+|.-.+.... +...+..++.||....+..+++-|
T Consensus 47 L~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 47 LYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHH
Confidence 55666644443333 345578899999998888877654
No 74
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=29.32 E-value=1.7e+02 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 032410 38 VAKGLEAWKSGNSQDFGKLISAS 60 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~s 60 (141)
+..++.|+.+||++.|-.+|.+.
T Consensus 180 ~~~f~~a~~~gd~~~l~~ll~~d 202 (290)
T PRK09635 180 TRAFIEACSNGDLDTLLEVLDPG 202 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHhhhh
Confidence 67888889999999888888654
No 75
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=29.08 E-value=55 Score=23.82 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHhhCChhHHHHHHHHhhCCCc--eeEEE
Q 032410 53 FGKLISASGSEPLIQLNEILQRAPGV--FGARF 83 (141)
Q Consensus 53 lg~lm~~sh~pe~d~l~~~a~~~~Ga--~Gari 83 (141)
+.+.|.+.+.|.++++.+.+++ .|+ |+|.+
T Consensus 81 ~k~~mk~~~v~sl~eLl~~a~e-~GVk~~AC~m 112 (148)
T PF13686_consen 81 MKKMMKKKGVPSLEELLEMAKE-LGVKFYACSM 112 (148)
T ss_dssp HHHHHHHCT---HHHHHHHHHH-CCEEEEEEHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH-CCCEEEEehh
Confidence 3445555569999999999997 564 44443
No 76
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=27.81 E-value=1.2e+02 Score=25.14 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHH
Q 032410 63 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 109 (141)
Q Consensus 63 pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~ 109 (141)
+.+..+.++|.+ .|.-..++|+-+ |-.|-..+.+.++++.+.|+
T Consensus 45 e~Lr~i~diAek-yG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 45 ETLRKIADIAEK-YGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred HHHHHHHHHHHH-hCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 345677777766 676567787777 77766676777777777776
No 77
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=26.88 E-value=49 Score=19.79 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHhhchhhhh
Q 032410 100 RAEEAASYVRSEYFELQPELAS 121 (141)
Q Consensus 100 ~~~~~~~~l~~~y~~~~~~~~~ 121 (141)
....+...+++-|..+||++.+
T Consensus 15 ei~~~~~~lre~Y~~~FPEL~~ 36 (53)
T PF08060_consen 15 EINLLHMRLREWYSWHFPELES 36 (53)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHHHHHHHHHHHHHccchhHHH
Confidence 3556778899999999998865
No 78
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=26.62 E-value=1.9e+02 Score=19.84 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Q 032410 22 PTLAKRAEHYFTENRRVAKGLEAWKSG--NSQDFGKLIS 58 (141)
Q Consensus 22 ~~~~~r~~~~v~e~~Rv~~~~~aL~~~--d~~~lg~lm~ 58 (141)
+..|..+++++.-+.|..++..-|++. ++...|+-+.
T Consensus 53 e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le 91 (97)
T PF15136_consen 53 EQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELE 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999888764 4555555443
No 79
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=26.31 E-value=43 Score=21.66 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC
Q 032410 38 VAKGLEAWKSGNSQDFGKLISASG 61 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~sh 61 (141)
+..+..++.+||++.+..++...-
T Consensus 13 v~~f~~al~~gd~~~a~~~~~~~~ 36 (111)
T PF12870_consen 13 VKNFFDALKNGDYEKAYAYLSPES 36 (111)
T ss_dssp HHHHHHHHCTT-HHHHHHTB--TT
T ss_pred HHHHHHHHHcCCHHHHHHhhCccc
Confidence 568889999999999999887664
No 80
>KOG3939 consensus Selenophosphate synthetase [Signal transduction mechanisms]
Probab=26.25 E-value=3.6e+02 Score=22.01 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHH-----HHhhC----------ChhHHHHHHHHhhCCCce
Q 032410 22 PTLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKL-----ISASG----------SEPLIQLNEILQRAPGVF 79 (141)
Q Consensus 22 ~~~~~r~~~~v~e~~Rv~~~~~aL~~~-------d~~~lg~l-----m~~sh----------~pe~d~l~~~a~~~~Ga~ 79 (141)
++..+-...++....|.++..+.|... |..-||.+ +...| .|-+..+.+.+.. -|-.
T Consensus 165 ~die~ay~~a~~~M~~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~~LPiI~km~~vska-~G~~ 243 (312)
T KOG3939|consen 165 EDIEKAYEEAMKSMARLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIHKLPIIAKMAEVSKA-CGNM 243 (312)
T ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhccccccccccccchhhhHHHHHHHhhccceeeeccChhhhhHHHHHHh-cccc
Confidence 344444555666666776666555432 44433332 11112 6777777777654 3433
Q ss_pred eEEEeCCC---CCceeEEEeccccHHHHHHHHHH
Q 032410 80 GARFSGAG---FRGCCLALVDADRAEEAASYVRS 110 (141)
Q Consensus 80 GarisGaG---~GG~vial~~~~~~~~~~~~l~~ 110 (141)
..-++|.. -||-+|+| |.+++.+|...++.
T Consensus 244 f~l~qGts~ETsGGlLIcl-P~eqaakfcaei~s 276 (312)
T KOG3939|consen 244 FKLRQGTSAETSGGLLICL-PREQAAKFCAEIKS 276 (312)
T ss_pred ceeccCCCccCCCceEEEc-cHHHHHHHHHHhcC
Confidence 33335533 44778775 46677777766653
No 81
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=26.15 E-value=9.2 Score=29.95 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=8.4
Q ss_pred EeCCCCCceeEE
Q 032410 83 FSGAGFRGCCLA 94 (141)
Q Consensus 83 isGaG~GG~via 94 (141)
|.|+|.|||++|
T Consensus 5 IVGsG~~G~v~A 16 (296)
T PF00732_consen 5 IVGSGAGGSVVA 16 (296)
T ss_dssp EES-SHHHHHHH
T ss_pred EECcCHHHHHHH
Confidence 678888887755
No 82
>PRK05325 hypothetical protein; Provisional
Probab=25.53 E-value=58 Score=27.90 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=22.0
Q ss_pred ceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCC
Q 032410 90 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 137 (141)
Q Consensus 90 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 137 (141)
|+++.- ..+...+.+++.|.. -.|++|..+.|+|
T Consensus 288 GT~vSS----A~~l~~eIi~~rYpp----------~~wNIY~f~aSDG 321 (401)
T PRK05325 288 GTIVSS----AYKLALEIIEERYPP----------AEWNIYAFQASDG 321 (401)
T ss_pred CeEehH----HHHHHHHHHHhhCCH----------hHCeeEEEEcccC
Confidence 566442 344444555556664 3699999999988
No 83
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.60 E-value=1.8e+02 Score=19.18 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 032410 30 HYFTENRRVAKGLEAWKSGNSQDFGKL 56 (141)
Q Consensus 30 ~~v~e~~Rv~~~~~aL~~~d~~~lg~l 56 (141)
.++.+..-+.+-.++|.++|+..|..+
T Consensus 29 a~~~~~gLt~eE~~aL~~~D~~~L~~l 55 (81)
T cd07922 29 AVFEEYGLTPAERAALREGTFGALTSI 55 (81)
T ss_pred HHHHHcCCCHHHHHHHHccCHHHHHHc
Confidence 677888888899999999999888765
No 84
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=23.08 E-value=95 Score=21.43 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.6
Q ss_pred eeEEEeccccHHHHHHHHHHHHH
Q 032410 91 CCLALVDADRAEEAASYVRSEYF 113 (141)
Q Consensus 91 ~vial~~~~~~~~~~~~l~~~y~ 113 (141)
.+=+++...+++++++.|++.|+
T Consensus 79 ~IHciVde~NvdeIIeLl~kTFk 101 (102)
T PF03197_consen 79 KIHCIVDENNVDEIIELLQKTFK 101 (102)
T ss_pred EEEEEEccCCHHHHHHHHHHHhc
Confidence 45678889999999999998876
No 85
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=22.78 E-value=1.6e+02 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCc-eeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhc
Q 032410 67 QLNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 116 (141)
Q Consensus 67 ~l~~~a~~~~Ga-~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~ 116 (141)
.+.+.+.+ .|. +-.==.|||||+ .....+++.+.+.+...+.+
T Consensus 192 ~~~~~~~~-~g~~l~~ldiGGGf~~------~~~~~~~~~~~i~~~l~~~~ 235 (394)
T cd06831 192 CVFDMAEE-FGFKMNMLDIGGGFTG------SEIQLEEVNHVIRPLLDVYF 235 (394)
T ss_pred HHHHHHHH-CCCCCCEEEeCCCcCC------CCCCHHHHHHHHHHHHHHhc
Confidence 34555554 442 233347999986 22356777777777776644
No 86
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=22.63 E-value=1.8e+02 Score=17.33 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCHH----HHHHHHHh
Q 032410 35 NRRVAKGLEAWKSGNSQ----DFGKLISA 59 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d~~----~lg~lm~~ 59 (141)
..||..+.+++.+|.|. .+..-|-+
T Consensus 27 ~~kV~~ik~~I~~G~Y~vd~~~iA~~ml~ 55 (57)
T PF04316_consen 27 AEKVAEIKAAIASGTYKVDAEKIAEKMLD 55 (57)
T ss_dssp HHHHHHHHHHHHTT-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 46888999999999654 55554443
No 87
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=22.63 E-value=1.5e+02 Score=24.41 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 107 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~ 107 (141)
+|.+|.+.+.+.+ .|+.|+|+ -|+|-+........+++.
T Consensus 118 ~~GLD~Ll~R~~~-~~~~GaKw------RsVIki~~~~~i~aiv~q 156 (292)
T cd00949 118 IPNLDELLMRAKE-KGVFGTKM------RSVIKEANPKGIAAVVDQ 156 (292)
T ss_pred CccHHHHHHHHHH-hCCCCcce------eeEeecCCcchHHHHHHH
Confidence 8899999999987 89999887 678887765444444443
No 88
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=22.61 E-value=40 Score=13.65 Aligned_cols=6 Identities=33% Similarity=0.883 Sum_probs=3.2
Q ss_pred EEeCCC
Q 032410 82 RFSGAG 87 (141)
Q Consensus 82 risGaG 87 (141)
.++|+|
T Consensus 3 ~l~GgG 8 (10)
T PF08250_consen 3 SLGGGG 8 (10)
T ss_pred ccccCc
Confidence 455555
No 89
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=22.55 E-value=88 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.206 Sum_probs=4.3
Q ss_pred eCCCCCcee
Q 032410 84 SGAGFRGCC 92 (141)
Q Consensus 84 sGaG~GG~v 92 (141)
+|+|+||+=
T Consensus 2 ~~g~GG~s~ 10 (148)
T KOG3304|consen 2 AQGGGGGSR 10 (148)
T ss_pred CCCCCCCCc
Confidence 344445554
No 90
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=21.59 E-value=1.2e+02 Score=25.68 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=21.4
Q ss_pred ceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCC
Q 032410 90 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 137 (141)
Q Consensus 90 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 137 (141)
|+++.- ..+...+.+++.|.. -.|++|..+.|+|
T Consensus 268 GT~vSS----A~~l~~eII~~rYpp----------~~wNIY~f~aSDG 301 (371)
T TIGR02877 268 GTYCSS----GYKKALEIIDERYNP----------ARYNIYAFHFSDG 301 (371)
T ss_pred CeEehH----HHHHHHHHHHhhCCh----------hhCeeEEEEcccC
Confidence 566442 233444445555554 3699999999988
No 91
>PHA01735 hypothetical protein
Probab=21.26 E-value=88 Score=20.29 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=26.2
Q ss_pred CHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 032410 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS 50 (141)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~ 50 (141)
+++.|+..-..+..++.+|++.--....-...+++-|+++|.
T Consensus 6 ~ee~fs~LH~~lt~El~~RiksgeATtaDL~AA~d~Lk~NdI 47 (76)
T PHA01735 6 TEEQFDELHQLLTNELLSRIKSGEATTADLRAACDWLKSNDI 47 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHCCC
Confidence 455565555566777777776655555555666666666664
No 92
>PF15573 Imm27: Immunity protein 27
Probab=21.14 E-value=1.8e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHhhC
Q 032410 22 PTLAKRAEHYFTENRRVAKGLEAWKSGNSQ---DFGKLISASG 61 (141)
Q Consensus 22 ~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~---~lg~lm~~sh 61 (141)
+++..-++.+.+|.+.....++.++.||+. .|-++||+..
T Consensus 17 ~~lK~~ll~~~tE~E~~lli~El~K~GDFsvK~LLiqLMN~Tk 59 (259)
T PF15573_consen 17 SELKENLLSVQTEKECLLLIIELLKKGDFSVKNLLIQLMNQTK 59 (259)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhCCchhhHHHHHHHhcch
Confidence 456667788889999999999999999986 6778899885
No 93
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=20.85 E-value=2.7e+02 Score=22.43 Aligned_cols=41 Identities=12% Similarity=0.286 Sum_probs=31.8
Q ss_pred EEEeCCCCCceeEEEecc-ccHHHHHHHHHHHHHhhchhhhh
Q 032410 81 ARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQPELAS 121 (141)
Q Consensus 81 arisGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~ 121 (141)
.++.++|.-|-+|||-+. ..-++++..|++.+.+..+-+..
T Consensus 24 v~L~nnGYe~vvIAI~p~VpEd~~lI~~Ik~m~t~AS~~Lf~ 65 (262)
T PF08434_consen 24 VKLNNNGYEDVVIAINPSVPEDEKLIDNIKDMFTEASQYLFN 65 (262)
T ss_pred EEecCCCcccEEEEECCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999877 23457888888888776554444
No 94
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=20.10 E-value=4.7e+02 Score=21.03 Aligned_cols=65 Identities=20% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCCHHHHHHHhccc-------CH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----ChhHHHHHHH
Q 032410 7 NVEEEVYEAHKNEL-------EP--TLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----SEPLIQLNEI 71 (141)
Q Consensus 7 ~v~~~~~~~~~~~l-------~~--~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----~pe~d~l~~~ 71 (141)
.++.+++.....++ |+ .+..++..+-.-..++..++..-...+.+.+-.++.+.. .|+++.|.+.
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~ 160 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRR 160 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHH
Confidence 46677777766543 22 133333333333333333333224577889999988885 7777665554
Done!