Query 032410
Match_columns 141
No_of_seqs 106 out of 1039
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 22:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 99.9 3.8E-27 1.3E-31 201.5 12.8 116 23-140 381-517 (520)
2 1pie_A Galactokinase; galactos 99.9 1.3E-23 4.5E-28 174.2 16.5 132 3-141 274-416 (419)
3 2a2c_A N-acetylgalactosamine k 99.9 1.6E-23 5.5E-28 176.9 12.8 115 23-141 347-475 (478)
4 2cz9_A Probable galactokinase; 99.9 9.7E-23 3.3E-27 163.9 15.4 124 5-140 217-350 (350)
5 1wuu_A Galactokinase; galactos 99.9 2.5E-22 8.6E-27 165.4 16.6 128 3-141 260-397 (399)
6 1kvk_A MK, mevalonate kinase; 99.7 3.1E-17 1E-21 134.7 10.2 106 23-140 263-379 (395)
7 3k85_A D-glycero-D-manno-hepto 99.7 1.5E-17 5E-22 135.7 5.2 98 26-140 229-338 (357)
8 3gon_A Phosphomevalonate kinas 99.7 8.4E-17 2.9E-21 127.8 9.2 80 30-114 228-318 (335)
9 4hac_A Mevalonate kinase; GHMP 99.6 4.8E-15 1.6E-19 119.1 13.1 88 38-140 223-320 (321)
10 2hfs_A Mevalonate kinase, puta 99.5 3.2E-14 1.1E-18 113.7 10.9 94 37-140 229-332 (332)
11 3k17_A LIN0012 protein; protei 99.5 1E-13 3.5E-18 113.4 11.0 81 27-109 243-340 (365)
12 2x7i_A Mevalonate kinase; tran 99.5 1.4E-13 4.7E-18 108.9 10.0 76 36-112 212-297 (308)
13 1h72_C HK, homoserine kinase; 99.5 4.4E-13 1.5E-17 105.3 11.2 96 28-141 192-296 (296)
14 2oi2_A Mevalonate kinase; enzy 99.5 5.2E-13 1.8E-17 104.4 11.2 75 38-113 200-284 (292)
15 2pg9_A Phosphomevalonate kinas 99.4 1.1E-12 3.6E-17 106.1 12.6 77 31-109 230-319 (337)
16 3hul_A HSK, HK, homoserine kin 99.4 9.3E-12 3.2E-16 99.2 12.3 95 31-140 184-288 (298)
17 1kkh_A Mevalonate kinase; mixe 99.3 1.9E-11 6.6E-16 96.8 11.6 67 41-109 229-304 (317)
18 3qt5_A Mevalonate diphosphate 99.3 2.1E-11 7.1E-16 98.6 10.6 97 30-141 213-331 (332)
19 2gs8_A Mevalonate pyrophosphat 99.1 6.2E-10 2.1E-14 88.6 12.1 89 34-140 209-317 (317)
20 3pyf_A 4-diphosphocytidyl-2-C- 99.1 3.2E-10 1.1E-14 90.6 9.1 90 37-141 202-300 (306)
21 2hke_A Diphosphomevalonate dec 98.7 2.2E-07 7.6E-12 76.0 11.4 79 34-114 221-320 (380)
22 1uek_A 4-(cytidine 5'-diphosph 98.5 9.2E-08 3.2E-12 74.5 4.1 58 62-137 210-268 (275)
23 1fi4_A Mevalonate 5-diphosphat 98.5 1.2E-06 3.9E-11 72.7 10.7 77 35-113 251-348 (416)
24 3lto_A Mevalonate diphosphate 98.4 8.1E-07 2.8E-11 71.8 8.9 79 34-114 212-310 (323)
25 3f0n_A Mevalonate pyrophosphat 98.4 2.4E-06 8.4E-11 71.1 11.5 84 29-114 240-346 (414)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.8 2.4E-06 8.4E-11 66.4 -0.0 57 37-99 188-252 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 97.1 0.00025 8.7E-09 55.5 3.1 33 62-99 219-251 (283)
28 3m05_A Uncharacterized protein 75.5 6.1 0.00021 26.8 5.3 51 64-115 17-72 (114)
29 2cz4_A Hypothetical protein TT 63.2 20 0.0007 24.1 5.8 52 62-114 34-99 (119)
30 1o51_A Hypothetical protein TM 61.0 13 0.00043 25.1 4.4 49 62-111 29-97 (114)
31 2j9c_A GLNK1, hypothetical nit 54.8 33 0.0011 22.8 5.7 50 64-114 14-85 (119)
32 1vfj_A Nitrogen regulatory pro 51.0 49 0.0017 21.7 6.1 50 64-114 12-83 (116)
33 2eg2_A Nitrogen regulatory pro 46.6 57 0.002 21.2 6.3 50 64-114 12-83 (112)
34 3dfe_A Putative PII-like signa 41.6 62 0.0021 21.4 5.3 51 63-114 16-86 (111)
35 3bzq_A Nitrogen regulatory pro 39.1 78 0.0027 20.5 6.0 50 64-114 14-85 (114)
36 2o66_A PII protein; regulation 37.1 98 0.0033 21.1 6.8 50 64-114 24-96 (135)
37 2i9o_A MHB8A peptide; beta-hai 33.8 35 0.0012 17.9 2.4 13 100-112 22-34 (37)
38 3e8o_A Uncharacterized protein 32.5 1E+02 0.0035 19.9 7.4 75 66-140 41-117 (119)
39 3t9z_A GLNK3, nitrogen regulat 32.4 1.1E+02 0.0038 20.3 6.1 50 64-114 12-83 (118)
40 2ns1_B Nitrogen regulatory pro 31.7 1.1E+02 0.0037 20.0 7.5 50 64-114 16-87 (116)
41 3ncq_A Nitrogen regulatory pro 30.7 1.2E+02 0.0041 20.2 5.8 50 64-114 12-83 (119)
42 2a0b_A HPT domain; sensory tra 29.9 1.2E+02 0.0039 19.7 7.6 50 8-57 12-63 (125)
43 2gw8_A PII signal transduction 29.8 1.2E+02 0.004 19.7 6.4 50 64-114 14-85 (114)
44 2gff_A LSRG protein; dimeric a 28.3 1.1E+02 0.0038 19.0 6.1 73 66-138 23-97 (106)
45 2r25_A Phosphorelay intermedia 27.3 1.7E+02 0.0058 20.9 7.2 51 9-59 10-65 (167)
46 1y0h_A Hypothetical protein RV 27.1 1.1E+02 0.0038 18.6 5.8 67 67-134 28-96 (102)
47 1hwu_A PII protein; herbaspiri 26.9 1.3E+02 0.0044 19.3 7.0 50 64-114 12-83 (112)
48 1tuv_A Protein YGIN; menadione 24.6 1.4E+02 0.0049 19.0 6.3 73 67-140 26-108 (114)
49 2oux_A Magnesium transporter; 23.6 1.5E+02 0.0052 22.1 5.5 88 5-96 93-189 (286)
50 3t37_A Probable dehydrogenase; 22.8 8.1 0.00028 31.5 -2.1 16 79-94 18-33 (526)
51 2i7u_A Four-alpha-helix bundle 21.5 9.9 0.00034 22.2 -1.3 14 85-98 30-43 (62)
52 2iqt_A Fructose-bisphosphate a 21.4 1.1E+02 0.0037 24.1 4.2 44 62-113 123-166 (296)
53 4hhu_A OR280; engineered prote 21.3 2.1E+02 0.007 19.7 5.8 66 66-140 21-86 (170)
54 3kxr_A Magnesium transporter, 20.7 1.9E+02 0.0066 20.3 5.4 89 3-96 8-104 (205)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.94 E-value=3.8e-27 Score=201.45 Aligned_cols=116 Identities=29% Similarity=0.534 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHhhC----------ChhHHHHHHHHhhCCCceeEEEeC
Q 032410 23 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASG----------SEPLIQLNEILQRAPGVFGARFSG 85 (141)
Q Consensus 23 ~~~~r~~~~v~e~~Rv~~~~~aL~~~-------d~~~lg~lm~~sh----------~pe~d~l~~~a~~~~Ga~GarisG 85 (141)
.+++|++|+++|+.||.+++++|.++ |++.||++|+++| ||++|.|++++++ .|++|+||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG 459 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG 459 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence 48999999999999999999999997 5999999999999 8999999999998 8999999999
Q ss_pred CCCCceeEEEe---ccccHHHHHHHHHHHHHhh-chhhhhhcCCCceEEEeecCCCeee
Q 032410 86 AGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 86 aG~GG~vial~---~~~~~~~~~~~l~~~y~~~-~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
||||||+|+|+ +++.++++++++++.|+++ ||++++. +.++.+|+++|++||.+
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~~~~~~p~~GA~i 517 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDAIIVSKPALGTCL 517 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHHEEECCCCCCSEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEecCCCceEE
Confidence 99999999999 8889999999999998865 3433321 34689999999999987
No 2
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.91 E-value=1.3e-23 Score=174.18 Aligned_cols=132 Identities=33% Similarity=0.510 Sum_probs=119.5
Q ss_pred CCcCCCCHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEI 71 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l-~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~ 71 (141)
..||+++++++..+++.| ++..++|+.|++.|+.|+..++.+|.++|++.||++|+++| +|++|++++.
T Consensus 274 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~ 353 (419)
T 1pie_A 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET 353 (419)
T ss_dssp SSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 467888888888888777 46688999999999999999999999999999999999887 9999999999
Q ss_pred HhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 72 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 72 a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
+++.+|++|+||||||||||+++|++++.++++.+++++.|.+. ++.++.+|+++|++||+++
T Consensus 354 a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 354 AQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred HHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 99723999999999999999999999988999999999999874 4888999999999999875
No 3
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.90 E-value=1.6e-23 Score=176.90 Aligned_cols=115 Identities=30% Similarity=0.472 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHhhC----------ChhHHHHHHHHhhCCCceeEEEeCCCCC
Q 032410 23 TLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASG----------SEPLIQLNEILQRAPGVFGARFSGAGFR 89 (141)
Q Consensus 23 ~~~~r~~~~v~e~~Rv~~~~~aL~~---~d~~~lg~lm~~sh----------~pe~d~l~~~a~~~~Ga~GarisGaG~G 89 (141)
++++|++|++.|+.|+..++++|.+ +|++.||++|+++| +|++|+|++.+++ .|++|+||||||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~G 425 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWG 425 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCc
Confidence 5678999999999999999999999 99999999999998 9999999999998 89999999999999
Q ss_pred ceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcC-CCceEEEeecCCCeeeC
Q 032410 90 GCCLALVDADRAEEAASYVRSEYFELQPELASQLN-ADSAVLICKPGDCARVI 141 (141)
Q Consensus 90 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~-~~~~~~~~~p~~Ga~v~ 141 (141)
||+++|++++.+++++++|++.|.++++.. |+ ..+.+|+++|++||+++
T Consensus 426 G~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 426 GCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCBCCCEEE
T ss_pred cEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCCCCeEee
Confidence 999999999889999999999999853210 01 24689999999999874
No 4
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.90 E-value=9.7e-23 Score=163.92 Aligned_cols=124 Identities=30% Similarity=0.429 Sum_probs=110.1
Q ss_pred cCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHHhh
Q 032410 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEILQR 74 (141)
Q Consensus 5 Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a~~ 74 (141)
||+++.++| ..+++..++|..|.+.|+.|+..++.+|.++|++.||++|+++| +|+++++++.+++
T Consensus 217 lr~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~ 292 (350)
T 2cz9_A 217 SKEVREGEL----SKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK 292 (350)
T ss_dssp GGGCCGGGG----GGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hhhCCHHHH----hhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 444444443 35788888899999999999999999999999999999998876 9999999999998
Q ss_pred CCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeee
Q 032410 75 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 75 ~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
.|++|+||||+|||||+++|++++.++++.+++++.|.+. |+..+.+++++|++||++
T Consensus 293 -~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 293 -LGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKR-------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp -TTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------CCSCCEEEEECEECCSBC
T ss_pred -cCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHh-------hCCCCcEEEecCCCCCCC
Confidence 7999999999999999999999888999999999999874 588999999999999975
No 5
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.89 E-value=2.5e-22 Score=165.39 Aligned_cols=128 Identities=31% Similarity=0.518 Sum_probs=115.9
Q ss_pred CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEIL 72 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a 72 (141)
..||+++.+++...++.+++..++|+.|++.|+.|+..++.+|.++|++.||++|+++| +|++|++++.+
T Consensus 260 ~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a 339 (399)
T 1wuu_A 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAA 339 (399)
T ss_dssp SSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35788888889888889999999999999999999999999999999999999999977 99999999999
Q ss_pred hhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 73 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 73 ~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
++..|++|+||||||||||+++|++++.++++.+.+++.| +..+.+++++|++|++++
T Consensus 340 ~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 340 LAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp HTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC-----------SSCCEEEEECCCCCSEEC
T ss_pred HhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh-----------CCCCcEEEEcCCCCeeec
Confidence 8525999999999999999999999888888888888755 446899999999999875
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.71 E-value=3.1e-17 Score=134.69 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCcee
Q 032410 23 TLAKRAEHYFTENRRVAKG-LEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCC 92 (141)
Q Consensus 23 ~~~~r~~~~v~e~~Rv~~~-~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~v 92 (141)
..++|+.|++.|+.|+... +.+|.++|++.||++|+++| +|++|++++.+++ .|+ |+||||||||||+
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v 340 (395)
T 1kvk_A 263 PLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCG 340 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEE
Confidence 4678999999999998776 68899999999999999887 8999999999998 799 9999999999999
Q ss_pred EEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEee-cCCCeee
Q 032410 93 LALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 140 (141)
Q Consensus 93 ial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v 140 (141)
++|++++..+++++.+.+.|.+. + +.+|+++ ++.|+++
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~--------g--~~~~~~~~~~~G~~v 379 (395)
T 1kvk_A 341 ITLLKPGLERAKVEAAKQALTGC--------G--FDCWETSIGAPGVSM 379 (395)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHT--------T--CEEEEEEESCCCSEE
T ss_pred EEEecCCCCHHHHHHHHHHHHHc--------C--CEEEEEecCCCcEEE
Confidence 99999887888888888888763 3 3588888 5899876
No 7
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.5e-17 Score=135.75 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEE
Q 032410 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 94 (141)
Q Consensus 26 ~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~via 94 (141)
+|+.|.+.+ ++.+++++|.++|++.||++|+++| +|++|+|++.+++ .|++|+||||||+|||+++
T Consensus 229 ~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~via 305 (357)
T 3k85_A 229 IEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMF 305 (357)
T ss_dssp THHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEEE
Confidence 456777765 7889999999999999999999997 5999999999987 7999999999999999999
Q ss_pred EeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 95 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 95 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
|++++.++++.++|++. + +.++.+++ ..|+++
T Consensus 306 l~~~~~~~~~~~~l~~~------------g--~~~~~~~~~~~G~~v 338 (357)
T 3k85_A 306 VVEPTRKEEVVRALNNL------------N--GFVMPFQFIDDGAHG 338 (357)
T ss_dssp ECCHHHHHHHHHHHHTS------------S--SCBCCCCBCCCCCEE
T ss_pred EecHHHHHHHHHHHHHC------------C--CeEEEeEEcCCceEE
Confidence 99887777777776532 2 45666666 577765
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.68 E-value=8.4e-17 Score=127.81 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc
Q 032410 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 98 (141)
Q Consensus 30 ~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~ 98 (141)
++.....++.+++.+|.++|++.||++|+++| +|++|.|++.+.+ .|+ |+||||||||||+|||+++
T Consensus 228 ~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~ 305 (335)
T 3gon_A 228 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFD 305 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECC
Confidence 34455677889999999999999999999998 8999999999987 785 8999999999999999975
Q ss_pred ccHHHHHHHHHHHHHh
Q 032410 99 DRAEEAASYVRSEYFE 114 (141)
Q Consensus 99 ~~~~~~~~~l~~~y~~ 114 (141)
+. ..+.+.+.|.+
T Consensus 306 ~~---~~~~i~~~~~~ 318 (335)
T 3gon_A 306 AQ---STKTLKNRWAD 318 (335)
T ss_dssp HH---HHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHH
Confidence 32 23444445554
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.62 E-value=4.8e-15 Score=119.10 Aligned_cols=88 Identities=30% Similarity=0.434 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHH
Q 032410 38 VAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 108 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l 108 (141)
+..++.+|.++|++.|+++|+++| +|+++++++.+++ .|++|+||||+|+|||+++|++++.++++.+.|
T Consensus 223 ~~~~~~al~~~d~~~lg~~~~~~~~~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l 301 (321)
T 4hac_A 223 SRIGEQLVLSGDYASIGRLMNVNQGLLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEAV 301 (321)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHHH
Confidence 557889999999999999999876 8999999999998 799999999999999999999777787777766
Q ss_pred HHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 109 RSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 109 ~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
++. + +.++++++ ..|++|
T Consensus 302 ~~~------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 302 AGA------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHT------------T--CEEEEECBCSCSSEE
T ss_pred HhC------------C--CeEEEEEECCCceec
Confidence 532 2 47899998 789886
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.54 E-value=3.2e-14 Score=113.66 Aligned_cols=94 Identities=21% Similarity=0.336 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHH
Q 032410 37 RVAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAAS 106 (141)
Q Consensus 37 Rv~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~ 106 (141)
++..++.+|.++|++.|+++|+++| +|+++++++.+++ .|++|++|||+|+|||+++|++++ .++++.+
T Consensus 229 ~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~ 307 (332)
T 2hfs_A 229 IVSQAREALQKGDLQRLGQLMNANHDLCRQIDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIVK 307 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHHH
Confidence 4567889999999999999999775 8999999999997 899999999999999999999875 4678888
Q ss_pred HHHHHHHhhchhhhhhcCCCceEEEeecCCCeee
Q 032410 107 YVRSEYFELQPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 107 ~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
.+++.|... ++ .-.+.+.|++||++
T Consensus 308 ~l~~~~~~~--------~~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 308 GLKAKCPEA--------KF-IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHCTTC--------CE-EEEEEECCSCC---
T ss_pred HHHHHHhcC--------Cc-eEEEEeccCCCCCC
Confidence 888766542 22 22355778999974
No 11
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.50 E-value=1e-13 Score=113.39 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=68.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHhhC---------------ChhHHHHHHHHhhCCCceeEEEeCCCCCc
Q 032410 27 RAEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASG---------------SEPLIQLNEILQRAPGVFGARFSGAGFRG 90 (141)
Q Consensus 27 r~~~~v~e~~-Rv~~~~~aL~~~d~~~lg~lm~~sh---------------~pe~d~l~~~a~~~~Ga~GarisGaG~GG 90 (141)
+..+++.++. ++.+++++|.++|++.||++|+++| +|++|+|++.+++ .|++ +|||||||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg 320 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGD 320 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCC
Confidence 3568888865 5799999999999999999999887 6999999999997 8988 9999999999
Q ss_pred eeEEEeccc-cHHHHHHHHH
Q 032410 91 CCLALVDAD-RAEEAASYVR 109 (141)
Q Consensus 91 ~vial~~~~-~~~~~~~~l~ 109 (141)
|+|+|++++ .++++.++++
T Consensus 321 ~vial~~~~~~~~~l~~~l~ 340 (365)
T 3k17_A 321 CGIAFSKTKELAEKLVNEWE 340 (365)
T ss_dssp EEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHH
Confidence 999999874 3455544444
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.48 E-value=1.4e-13 Score=108.91 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHH
Q 032410 36 RRVAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 105 (141)
Q Consensus 36 ~Rv~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~ 105 (141)
.++.+++.+|.++|++.|+++|+++| +|+++++++.+++ .|++|++|||+|+|||+++|+++ +.++++.
T Consensus 212 ~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~ 290 (308)
T 2x7i_A 212 KLVLRASDVIEHHKFEALADIFNECHADLKALTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIV 290 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHHH
Confidence 46788899999999999999999987 7999999999998 89999999999999999999987 5677777
Q ss_pred HHHHHHH
Q 032410 106 SYVRSEY 112 (141)
Q Consensus 106 ~~l~~~y 112 (141)
+.+++.|
T Consensus 291 ~~l~~~~ 297 (308)
T 2x7i_A 291 KAVEKAG 297 (308)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 7766543
No 13
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.46 E-value=4.4e-13 Score=105.29 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HhhC-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc
Q 032410 28 AEHYFTENRRVAKGLEAWKSGNSQDFGKLI--SASG-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 98 (141)
Q Consensus 28 ~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm--~~sh-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~ 98 (141)
..+.+.+..|+..++.+|.++|++.|+++| |+.| +|+++++++.+++ . ++|++|||+| +|+++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~~~~p~l~~~~~~~~~-~-a~ga~~sGsG--~~v~~l~~~ 267 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRGKLIPNYFKIKEEVKD-K-VYGITISGSG--PSIIAFPKE 267 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHHTTSTTHHHHHHHHTT-T-EEEEEECTTS--SCEEEEECG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhhccCccHHHHHHHHHh-h-cceEEEecCC--hheEEEecH
Confidence 347888888999999999999999999999 5556 9999999999987 6 8999999999 699999977
Q ss_pred ccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410 99 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 141 (141)
Q Consensus 99 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 141 (141)
+.++++.+.+++.|.. +. +++|++|++++
T Consensus 268 ~~~~~~~~~l~~~~~~------------~~--~~~~~~Ga~v~ 296 (296)
T 1h72_C 268 EFIDEVENILRDYYEN------------TI--RTEVGKGVEVV 296 (296)
T ss_dssp GGHHHHHHHHHHHCSC------------EE--EECBCCCCEEC
T ss_pred HHHHHHHHHHHHhccC------------ce--eccCCCCeEeC
Confidence 7788888777765432 22 77889999875
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.45 E-value=5.2e-13 Score=104.43 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHH
Q 032410 38 VAKGLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASY 107 (141)
Q Consensus 38 v~~~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~ 107 (141)
+..++.+|.++|++.|+++|+++| +|+++++++.+++ .|++|++|||+|+|||+++|+++ +.++++.+.
T Consensus 200 ~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~ 278 (292)
T 2oi2_A 200 TQQAEIAISQKDAEGLGQILSQAHLHLKEIGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAER 278 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHHH
Confidence 567889999999999999999876 8999999999997 89999999999999999999987 567777777
Q ss_pred HHHHHH
Q 032410 108 VRSEYF 113 (141)
Q Consensus 108 l~~~y~ 113 (141)
+++.+.
T Consensus 279 l~~~~~ 284 (292)
T 2oi2_A 279 LEEKGA 284 (292)
T ss_dssp HHHHTC
T ss_pred HHhcCc
Confidence 765443
No 15
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.44 E-value=1.1e-12 Score=106.14 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHHH-HHHHHHHHHHHhcCCHHHHHHHHHhhC-----------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEecc
Q 032410 31 YFTE-NRRVAKGLEAWKSGNSQDFGKLISASG-----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 98 (141)
Q Consensus 31 ~v~e-~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~ 98 (141)
.+.+ ..++.+++.+|.++|++.|+++|+++| +|++|+|++.+++ .|++ +||||||||||+++|+++
T Consensus 230 ~~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~ 307 (337)
T 2pg9_A 230 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFD 307 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECC
Confidence 3444 446778999999999999999999986 8999999999987 7999 999999999999999976
Q ss_pred c-cHHHHHHHHH
Q 032410 99 D-RAEEAASYVR 109 (141)
Q Consensus 99 ~-~~~~~~~~l~ 109 (141)
. .++++.++|+
T Consensus 308 ~~~~~~~~~~l~ 319 (337)
T 2pg9_A 308 AQSTKTLKNRWA 319 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 3444444443
No 16
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.35 E-value=9.3e-12 Score=99.17 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH-hh-C-------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccH
Q 032410 31 YFTENRRVAKGLEAWKSGNSQDFGKLIS-AS-G-------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRA 101 (141)
Q Consensus 31 ~v~e~~Rv~~~~~aL~~~d~~~lg~lm~-~s-h-------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~ 101 (141)
.+.+..++..++.+|.++|++.|+++|+ +. | +|+++++++.+++ .|++|++|||+| +|+++|++++.+
T Consensus 184 ~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~~a 260 (298)
T 3hul_A 184 AVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRNLA 260 (298)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CTTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHhhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHHHH
Confidence 4566678889999999999999999997 32 3 8999999999987 899999999999 899999986666
Q ss_pred HHHHHHHHHHHHhhchhhhhhcCCCceEEEeec-CCCeee
Q 032410 102 EEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 140 (141)
Q Consensus 102 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 140 (141)
+++.+.++ +. +..+.++++++ ..|++|
T Consensus 261 ~~v~~~l~----~~--------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 261 NKLQTSLQ----TL--------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp HHHHHHHH----TT--------CCSSEEEEEEBCCCCCEE
T ss_pred HHHHHHHH----hc--------CCCcEEEEcccCCCceEE
Confidence 66655544 32 56789999999 789987
No 17
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.31 E-value=1.9e-11 Score=96.85 Aligned_cols=67 Identities=36% Similarity=0.563 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHhhC---------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHH
Q 032410 41 GLEAWKSGNSQDFGKLISASG---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 109 (141)
Q Consensus 41 ~~~aL~~~d~~~lg~lm~~sh---------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~ 109 (141)
+.+++..+|++.|+++|+++| +|+++++++.+++ .| +|++|||+|+|||+++|++++.++++.++++
T Consensus 229 ~~~a~~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 557888899999999999886 7999999999987 79 9999999999999999998877776666555
No 18
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.28 E-value=2.1e-11 Score=98.62 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=78.9
Q ss_pred HHHHHHH-HHHHHHHHHhcCCHHHHHHHHH-hh---C-------------ChhHHHHHHHHh---hCCCceeEEEeCCCC
Q 032410 30 HYFTENR-RVAKGLEAWKSGNSQDFGKLIS-AS---G-------------SEPLIQLNEILQ---RAPGVFGARFSGAGF 88 (141)
Q Consensus 30 ~~v~e~~-Rv~~~~~aL~~~d~~~lg~lm~-~s---h-------------~pe~d~l~~~a~---~~~Ga~GarisGaG~ 88 (141)
+.+.+.. ++..++.||.++|++.|+++|. ++ | +|+++++.+.+. + .|++|+.+||+|
T Consensus 213 ~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~a~~SGaG- 290 (332)
T 3qt5_A 213 YWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPCYFTMDAG- 290 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcEEEEeCCC-
Confidence 4455555 8899999999999999999987 42 2 589999988884 5 899999999998
Q ss_pred CceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEe-ecCCCeeeC
Q 032410 89 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 141 (141)
Q Consensus 89 GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~ 141 (141)
+|+++|+++++++++.+.+++.|. +.+++++ +|+.|++++
T Consensus 291 -Ptv~~l~~~~~a~~v~~~l~~~~~------------~~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 291 -PNVKVLVEKKNKQAVMEQFLKVFD------------ESKIIASDIISSGVEII 331 (332)
T ss_dssp -SCEEEEEEHHHHHHHHHHHHTTSC------------GGGEEEEEBCSSCCEEC
T ss_pred -CcEEEEECHHHHHHHHHHHHHhCC------------CceEEEeccccCCcEec
Confidence 999999987777777777765433 3578898 899999875
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.13 E-value=6.2e-10 Score=88.55 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhC-----------------ChhHHHHHH---HHhhCCCceeEEEeCCCCCceeE
Q 032410 34 ENRRVAKGLEAWKSGNSQDFGKLISASG-----------------SEPLIQLNE---ILQRAPGVFGARFSGAGFRGCCL 93 (141)
Q Consensus 34 e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------------~pe~d~l~~---~a~~~~Ga~GarisGaG~GG~vi 93 (141)
...|+..++.+|.++|++.||++|+++| .|.+.++.+ .++. .|+.++.+||+| ||++
T Consensus 209 ~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~ 285 (317)
T 2gs8_A 209 SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVK 285 (317)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEE
Confidence 4778899999999999999999998654 344566654 3344 799999999999 9999
Q ss_pred EEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeee
Q 032410 94 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 94 al~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
+|++++..+++.+.+++ ...++++++++|++|
T Consensus 286 ~l~~~~~~~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 286 VLCLEKDLAQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EEEEGGGHHHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred EEEcHHHHHHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 99988777776666654 257999999999985
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.09 E-value=3.2e-10 Score=90.62 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-C------ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHHHH
Q 032410 37 RVAKGLEAWKSGNSQDFGKLISAS-G------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYV 108 (141)
Q Consensus 37 Rv~~~~~aL~~~d~~~lg~lm~~s-h------~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l 108 (141)
++..++.+|.++|++.|++.|.+. + +|+++++++.+.+ .|++|++|||+| +|+++|++.. .++++.+.+
T Consensus 202 ~~~~~~~al~~~d~~~l~~~l~n~le~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l 278 (306)
T 3pyf_A 202 EPGPVLAALAAGDPDQLAPLLGNEMQAAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDVGAQL 278 (306)
T ss_dssp CHHHHHHHHHHTCHHHHGGGCEETTHHHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHhccchHHHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHHHHHH
Confidence 567889999999999999988533 2 8999999999987 899999999999 9999999763 344444444
Q ss_pred HHHHHhhchhhhhhcCCCceEEEeec-CCCeeeC
Q 032410 109 RSEYFELQPELASQLNADSAVLICKP-GDCARVI 141 (141)
Q Consensus 109 ~~~y~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~ 141 (141)
.+. +..+.++++++ ..||++.
T Consensus 279 ----~~~--------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 279 ----SGA--------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp ----HHT--------TSSSEEEEEEECCBCSEEC
T ss_pred ----Hhc--------CCcceEEEeecCCCCCEEe
Confidence 332 66788999887 9999874
No 21
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.65 E-value=2.2e-07 Score=76.04 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh----C-------------ChhHHHHHHHHhh--CC-C-ceeEEEeCCCCCcee
Q 032410 34 ENRRVAKGLEAWKSGNSQDFGKLISAS----G-------------SEPLIQLNEILQR--AP-G-VFGARFSGAGFRGCC 92 (141)
Q Consensus 34 e~~Rv~~~~~aL~~~d~~~lg~lm~~s----h-------------~pe~d~l~~~a~~--~~-G-a~GarisGaG~GG~v 92 (141)
...++..++.||.++|++.|+++|.++ | .|...++.+.+.+ .. | ++++.+||+| +++
T Consensus 221 ~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv 298 (380)
T 2hke_A 221 VPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANC 298 (380)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcE
Confidence 467888999999999999999988532 2 6777788777643 13 8 7889999988 999
Q ss_pred EEEeccccHHHHHHHHHHHHHh
Q 032410 93 LALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 93 ial~~~~~~~~~~~~l~~~y~~ 114 (141)
++|++++.++++.+.+++.|..
T Consensus 299 ~~l~~~~~~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 299 FLFVLKEDLPEAVAMLMEHFPT 320 (380)
T ss_dssp EEEEEGGGHHHHHHHHHHHSCC
T ss_pred EEEECHHHHHHHHHHHHHhccc
Confidence 9999887788888888877653
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.47 E-value=9.2e-08 Score=74.49 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc-cHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCC
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 137 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 137 (141)
+|+++++++.+++ .|++|++|||+| ||+++|++++ .++++.+.++ + .. .+|++++++|
T Consensus 210 ~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~----~----------~~-~~~~~~~~~g 268 (275)
T 1uek_A 210 FPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALR----A----------WG-RAWAGTLGGG 268 (275)
T ss_dssp CTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHT----T----------TS-EEEEEEECCC
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhh----h----------cc-EEEEEEecCC
Confidence 5999999999987 899999999999 8999999764 3444433333 2 12 6888888655
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.46 E-value=1.2e-06 Score=72.73 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhC-----------------ChhHHHHHHHHhh--C-CC-ceeEEEeCCCCCceeE
Q 032410 35 NRRVAKGLEAWKSGNSQDFGKLISASG-----------------SEPLIQLNEILQR--A-PG-VFGARFSGAGFRGCCL 93 (141)
Q Consensus 35 ~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----------------~pe~d~l~~~a~~--~-~G-a~GarisGaG~GG~vi 93 (141)
..|+..++.||.++|++.||++|.++| +|....+.+.+.+ . .| +.++.+||+| ++++
T Consensus 251 ~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 251 PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 578889999999999999999986542 4566777766533 1 27 7888999999 9999
Q ss_pred EEeccccHHHHHHHHHHHHH
Q 032410 94 ALVDADRAEEAASYVRSEYF 113 (141)
Q Consensus 94 al~~~~~~~~~~~~l~~~y~ 113 (141)
+|++++..+++.+.+++.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99998788889999988876
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.43 E-value=8.1e-07 Score=71.77 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-hh---C-------------ChhHHHHHHHHhh---CCCceeEEEeCCCCCceeE
Q 032410 34 ENRRVAKGLEAWKSGNSQDFGKLIS-AS---G-------------SEPLIQLNEILQR---APGVFGARFSGAGFRGCCL 93 (141)
Q Consensus 34 e~~Rv~~~~~aL~~~d~~~lg~lm~-~s---h-------------~pe~d~l~~~a~~---~~Ga~GarisGaG~GG~vi 93 (141)
...++..++.+|.++|++.|++++. ++ | +|+..++.+.+.+ ..|++|+.++||| ++++
T Consensus 212 ~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~ 289 (323)
T 3lto_A 212 AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVH 289 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeE
Confidence 4578999999999999999999754 32 2 6887777777643 2689999999999 9999
Q ss_pred EEeccccHHHHHHHHHHHHHh
Q 032410 94 ALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 94 al~~~~~~~~~~~~l~~~y~~ 114 (141)
+|+++++.+.+.+.+++.+..
T Consensus 290 ~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 290 LLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp EEECGGGHHHHHHHHHHHTTT
T ss_pred EEEecccHHHHHHHHHHHhHh
Confidence 999999999999988866554
No 25
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.41 E-value=2.4e-06 Score=71.12 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHH-hh---C-------------ChhHHHHHHHHhhC----CCceeEEEeC
Q 032410 29 EHYFTE--NRRVAKGLEAWKSGNSQDFGKLIS-AS---G-------------SEPLIQLNEILQRA----PGVFGARFSG 85 (141)
Q Consensus 29 ~~~v~e--~~Rv~~~~~aL~~~d~~~lg~lm~-~s---h-------------~pe~d~l~~~a~~~----~Ga~GarisG 85 (141)
.+.+.+ ..|+..++.||.++|++.||+++. ++ | +|+...+++.+.+. .|++++.++|
T Consensus 240 ~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsd 319 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 455664 688999999999999999999744 43 3 68877777777542 2889999999
Q ss_pred CCCCceeEEEeccccHHHHHHHHHHHHHh
Q 032410 86 AGFRGCCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 86 aG~GG~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
|| +++++|+++++.+.+.+.+++.|..
T Consensus 320 AG--Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 320 AG--PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SS--SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred CC--CCEEEEEecccHHHHHHHHHHhcCC
Confidence 99 9999999998999999999876664
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.82 E-value=2.4e-06 Score=66.37 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-C------ChhHHHHHHHHhhCCCceeEE-EeCCCCCceeEEEeccc
Q 032410 37 RVAKGLEAWKSGNSQDFGKLISAS-G------SEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDAD 99 (141)
Q Consensus 37 Rv~~~~~aL~~~d~~~lg~lm~~s-h------~pe~d~l~~~a~~~~Ga~Gar-isGaG~GG~vial~~~~ 99 (141)
++..+ .+|.++|++.|+++|++. | +|+++++++.+++ .|+ ++ |||+| ||+++|+++.
T Consensus 188 ~~~~~-~al~~~d~~~~~~~~~n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~ 252 (271)
T 2v8p_A 188 TPEYA-EEKIQRIISGEVEEIENVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGAS 252 (271)
T ss_dssp CHHHH-HHHHHHHHTTCGGGCCBHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCC
T ss_pred chhHH-HHhhcCCHHHHHHHHhCChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCH
Confidence 44455 888888888888776322 2 7999999999987 787 89 99999 9999999775
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=97.11 E-value=0.00025 Score=55.49 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccc
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 99 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~ 99 (141)
+|+++++++.+++ .| |++|||+| +|+++|+++.
T Consensus 219 ~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~ 251 (283)
T 2ww4_A 219 FREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTE 251 (283)
T ss_dssp CHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSH
T ss_pred ChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCH
Confidence 6999999999987 78 89999998 9999999753
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=75.50 E-value=6.1 Score=26.85 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhCCCceeEEEeCCCCCc-----eeEEEeccccHHHHHHHHHHHHHhh
Q 032410 64 PLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 115 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~GarisGaG~GG-----~vial~~~~~~~~~~~~l~~~y~~~ 115 (141)
.+|.+.+...+ .|..|.+++-.|++| .+...++++.++++++.+.+..+.+
T Consensus 17 kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 17 DANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 46788777776 899888877554323 4566677889999999999877654
No 29
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=63.22 E-value=20 Score=24.12 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHhhCCCceeEEEe---CCCCCc-----------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 62 SEPLIQLNEILQRAPGVFGARFS---GAGFRG-----------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~Garis---GaG~GG-----------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
-+.++++.+.+.+ .|+-|..++ |-|-.+ -+..+++++.++++++.+.+....
T Consensus 34 ~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 34 SLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp GGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 4668899998887 788776554 333211 466777778899999999965543
No 30
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=60.96 E-value=13 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHhhCCCceeEEE----eCCCCCc----------------eeEEEeccccHHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARF----SGAGFRG----------------CCLALVDADRAEEAASYVRSE 111 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~Gari----sGaG~GG----------------~vial~~~~~~~~~~~~l~~~ 111 (141)
-|-+++|++.+++ .|+-|+.+ .|-|..| .+..+.+++.++.+...+.+.
T Consensus 29 ~pL~~~Iv~~~~~-~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 29 KPLFEYLVKRAYE-LGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EEHHHHHHHHHHH-TTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred eEHHHHHHHHHHH-CCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 6789999999998 89988876 3444333 233333445677777766643
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=54.81 E-value=33 Score=22.78 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhCCCceeEEEe---CCCC-Cce------------------eEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARFS---GAGF-RGC------------------CLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Garis---GaG~-GG~------------------vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+.+.+ .|+-|..++ |-|- +|. +..+++++.++.+++.+.+....
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 14 KLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46788887776 788766443 3332 121 67788888999999999987765
No 32
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=50.99 E-value=49 Score=21.66 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhCCCceeEEE---eCCCCC--c-----------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARF---SGAGFR--G-----------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Gari---sGaG~G--G-----------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+.+.+ .|+-|..+ .|-|-. . -+..+++++.++.+++.+.+....
T Consensus 12 ~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 12 KLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46778777776 78766543 344421 1 588888999999999999987765
No 33
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=46.64 E-value=57 Score=21.17 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhCCCceeEEEe---CCCC--Cc-----------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARFS---GAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Garis---GaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+-|..++ |-|- |. -+..+++++.++.+++.+.+....
T Consensus 12 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 12 KLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46778777776 787665443 3332 11 377778888999999999987765
No 34
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=41.58 E-value=62 Score=21.40 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhCCCceeEEE---eCCCC-----Cc-----------eeEEEe-ccccHHHHHHHHHHHHHh
Q 032410 63 EPLIQLNEILQRAPGVFGARF---SGAGF-----RG-----------CCLALV-DADRAEEAASYVRSEYFE 114 (141)
Q Consensus 63 pe~d~l~~~a~~~~Ga~Gari---sGaG~-----GG-----------~vial~-~~~~~~~~~~~l~~~y~~ 114 (141)
..+|++.+...+ .|+-|-.+ .|-|- |+ -+..++ +++.++.+++.+.+.+..
T Consensus 16 ~kl~~V~~aL~~-~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t 86 (111)
T 3dfe_A 16 VLLKKVAKIIEE-AGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFT 86 (111)
T ss_dssp GGHHHHHHHHHH-HTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-CCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhC
Confidence 356777777665 67666433 34441 11 235567 477899999998777666
No 35
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=39.08 E-value=78 Score=20.53 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhCCCceeEEE---eCCCC-Cc------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Gari---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+-|..+ .|-|- .| -+..+++++.++.+++.+.+....
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 14 TLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 46777777766 77766543 33332 12 377778888999999999987765
No 36
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=37.13 E-value=98 Score=21.11 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhCCCceeEEE---eCCCCC-c-------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARF---SGAGFR-G-------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Gari---sGaG~G-G-------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+.+.+ .|+.|..+ .|-|-. | -+..+++++.++.+++.+.+....
T Consensus 24 k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 24 RIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 46788887776 78877654 444432 1 367778888999999999987775
No 37
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=33.83 E-value=35 Score=17.92 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHH
Q 032410 100 RAEEAASYVRSEY 112 (141)
Q Consensus 100 ~~~~~~~~l~~~y 112 (141)
.++.+.+.+.+..
T Consensus 22 aaeayakriaeam 34 (37)
T 2i9o_A 22 AAEAYAKRIAEAM 34 (37)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666543
No 38
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=32.45 E-value=1e+02 Score=19.91 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHHHHHHHhhc-hhhhhhcCCCceEEEeecCCCeee
Q 032410 66 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 66 d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
..+.+.+++.+|+++..+.=.--.+..+.+... .+.+.+..+++..+.+.+ ..+...+--.+.+....+.+|.-|
T Consensus 41 ~~~~~~~r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ll~~~~~i~~~~~~~~~~~ 117 (119)
T 3e8o_A 41 VHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINI 117 (119)
T ss_dssp HHHHHHHTTSTTEEEEEEEEETTSTTEEEEEEEESSHHHHHHHHTCHHHHHHHHHHHHTTCCCCEEEEEEBCSCEEE
T ss_pred HHHHHHHhcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHhcCCCEEEEEeccccccc
Confidence 344555666799988877543333556666666 456777776665444443 233333345678888888777644
No 39
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=32.43 E-value=1.1e+02 Score=20.32 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhCCCceeEEEe---CCCCC-c------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARFS---GAGFR-G------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Garis---GaG~G-G------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+.|..++ |-|-. | -+..+++++.++++++.+.+....
T Consensus 12 kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~T 83 (118)
T 3t9z_A 12 KLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSART 83 (118)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcC
Confidence 46788887776 788776543 55531 2 256677888999999999986554
No 40
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=31.71 E-value=1.1e+02 Score=19.98 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhCCCceeEE---EeCCCCCc-------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGAR---FSGAGFRG-------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Gar---isGaG~GG-------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+-|.. ..|-|-.. -+..+++++.++.+++.+.+....
T Consensus 16 ~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 16 KLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46777777766 7775553 34555311 455667788899999999987775
No 41
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=30.67 E-value=1.2e+02 Score=20.17 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=35.1
Q ss_pred hHHHHHHHHhhCCCceeEEE---eCCCCC-c------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARF---SGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Gari---sGaG~G-G------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+.|..+ .|-|-. | -+..+++++.++.+++.+.+....
T Consensus 12 kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~T 83 (119)
T 3ncq_A 12 KFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT 83 (119)
T ss_dssp THHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46788887776 78877644 355531 2 256777888999999999986554
No 42
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=29.94 E-value=1.2e+02 Score=19.75 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=31.2
Q ss_pred CCHHHHHHHhcccCHHHHHHHHHH-HHHHHH-HHHHHHHHhcCCHHHHHHHH
Q 032410 8 VEEEVYEAHKNELEPTLAKRAEHY-FTENRR-VAKGLEAWKSGNSQDFGKLI 57 (141)
Q Consensus 8 v~~~~~~~~~~~l~~~~~~r~~~~-v~e~~R-v~~~~~aL~~~d~~~lg~lm 57 (141)
++.+.|......+.+.....+... +.++.. +..+..++..+|++.+....
T Consensus 12 lD~~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~d~~~~~~~a 63 (125)
T 2a0b_A 12 LDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEG 63 (125)
T ss_dssp SCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345556555666777666555544 444433 66777889999998765543
No 43
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=29.75 E-value=1.2e+02 Score=19.72 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhCCCceeEEEe---CCCC--Cc-----------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARFS---GAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Garis---GaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+-|..++ |-|- |. -+..+++++.++.+++.+.+....
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 14 KLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 46778777776 787665443 3332 11 455667778899999999987765
No 44
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=28.34 E-value=1.1e+02 Score=19.00 Aligned_cols=73 Identities=8% Similarity=-0.108 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHHHHHHHhhc-hhhhhhcCCCceEEEeecCCCe
Q 032410 66 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGDCA 138 (141)
Q Consensus 66 d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~p~~Ga 138 (141)
..+.+.+++.+|+++..+.=.--.+..+.+... .+.+.+...++..+.+.+ ..+...+...+.+.++.+.+|.
T Consensus 23 ~~~~~~~r~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 97 (106)
T 2gff_A 23 RANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPLMTGPRKKTVFIGLMPG 97 (106)
T ss_dssp HHHHHHHHTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSSCCEEEEEEEEECC
T ss_pred HHHHHHHhCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcCCcEEEEEeecCCC
Confidence 344455566689988866543323445555555 345666655543333222 2333333445777777774443
No 45
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=27.31 E-value=1.7e+02 Score=20.86 Aligned_cols=51 Identities=6% Similarity=-0.037 Sum_probs=32.1
Q ss_pred CHHHHHHHhcccCH---HHHHHHHHHHHHHHH-HHHHHHHHh-cCCHHHHHHHHHh
Q 032410 9 EEEVYEAHKNELEP---TLAKRAEHYFTENRR-VAKGLEAWK-SGNSQDFGKLISA 59 (141)
Q Consensus 9 ~~~~~~~~~~~l~~---~~~~r~~~~v~e~~R-v~~~~~aL~-~~d~~~lg~lm~~ 59 (141)
+.+.|...+...++ -+..-+..++.++.+ +..+..||. .+|++.+..+.+.
T Consensus 10 D~~~f~qL~el~dd~p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~ 65 (167)
T 2r25_A 10 NWTILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHF 65 (167)
T ss_dssp CHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCchHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHh
Confidence 44556655554442 233455555555555 667779999 9999988876543
No 46
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=27.06 E-value=1.1e+02 Score=18.60 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCceeEEEeCCCCCceeEEEecc-ccHHHHHHHHHHHHHhhc-hhhhhhcCCCceEEEeec
Q 032410 67 QLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKP 134 (141)
Q Consensus 67 ~l~~~a~~~~Ga~GarisGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~p 134 (141)
.+.+.+++.+|+++..+.=. -.+..+.++.. .+.+.+..+++..+.+.+ ..+...+...+.+..+.+
T Consensus 28 ~~~~~~~~epG~l~~~~~~~-~~~~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~~ 96 (102)
T 1y0h_A 28 AMITPTRAEDGCRSYDLYES-ADGGELVLFERYRSRIALDEHRGSPHYLNYRAQVGELLTRPVAVTVLAP 96 (102)
T ss_dssp HHHHHHHHSTTEEEEEEEEE-TTSSCEEEEEEESSHHHHHHHHTSHHHHHHHTTSGGGBSSCCEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEEEe-CCCCEEEEEEEECCHHHHHHHhcChHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 34444556699988866554 34555666655 456666666544333332 222222333466776666
No 47
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=26.91 E-value=1.3e+02 Score=19.34 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhCCCceeEEEe---CCCC-Cc------------------eeEEEeccccHHHHHHHHHHHHHh
Q 032410 64 PLIQLNEILQRAPGVFGARFS---GAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 114 (141)
Q Consensus 64 e~d~l~~~a~~~~Ga~Garis---GaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 114 (141)
.++.+.+...+ .|+-|..++ |-|- +| -+..+++++.++.+++.+.+....
T Consensus 12 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 12 KLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46778777776 787666543 4442 12 455667778899999999987765
No 48
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=24.55 E-value=1.4e+02 Score=19.01 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCceeEEEeCC--------CCCceeEEEecc-ccHHHHHHHHHHHHHhhc-hhhhhhcCCCceEEEeecCC
Q 032410 67 QLNEILQRAPGVFGARFSGA--------GFRGCCLALVDA-DRAEEAASYVRSEYFELQ-PELASQLNADSAVLICKPGD 136 (141)
Q Consensus 67 ~l~~~a~~~~Ga~GarisGa--------G~GG~vial~~~-~~~~~~~~~l~~~y~~~~-~~~~~~~~~~~~~~~~~p~~ 136 (141)
.+.+.+++.+|+++..+.=. --.+..+.+... .+.+.+...++..+.+.+ ..+...+. .+.+.++.+-.
T Consensus 26 ~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h~~~~~~~~~~l~~-~~~i~~~~~~~ 104 (114)
T 1tuv_A 26 KIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVL-EMNIRILQPGI 104 (114)
T ss_dssp HHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHHHHHHHHHHTTTEE-EEEEEEECCC-
T ss_pred HHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHhcc-CCEEEEEEEcc
Confidence 34455556699988877543 223556666666 456666666654443333 22221111 25677777766
Q ss_pred Ceee
Q 032410 137 CARV 140 (141)
Q Consensus 137 Ga~v 140 (141)
+.||
T Consensus 105 ~~~~ 108 (114)
T 1tuv_A 105 SGRV 108 (114)
T ss_dssp ----
T ss_pred cccc
Confidence 6654
No 49
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=23.64 E-value=1.5e+02 Score=22.06 Aligned_cols=88 Identities=7% Similarity=0.084 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----ChhHHHHHHHHhhC----
Q 032410 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----SEPLIQLNEILQRA---- 75 (141)
Q Consensus 5 Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----~pe~d~l~~~a~~~---- 75 (141)
|.+++.++....+..||+..++++...+.... ...+..+.+-.-..++.+|+..- ...+....+...+.
T Consensus 93 l~~l~~d~~~~ll~~l~~~~~~~i~~~l~~~e--~~~i~~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~ 170 (286)
T 2oux_A 93 LAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEE--AGEIKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMA 170 (286)
T ss_dssp HTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHH--HHHHHHHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSC
T ss_pred HHhCCHHHHHHHHHhCCHHHHHHHHHcCCHHH--HHHHHHHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCc
Confidence 45566666666666677766666665554433 22233333444456677776542 23445555555431
Q ss_pred CCceeEEEeCCCCCceeEEEe
Q 032410 76 PGVFGARFSGAGFRGCCLALV 96 (141)
Q Consensus 76 ~Ga~GarisGaG~GG~vial~ 96 (141)
.+....-++... |-++.++
T Consensus 171 ~~~~~~pVvd~~--~~lvGiv 189 (286)
T 2oux_A 171 ETIYYVYVVDQE--NHLVGVI 189 (286)
T ss_dssp SCCSEEEEECTT--CBEEEEE
T ss_pred cceeEEEEEcCC--CeEEEEE
Confidence 144445555443 4455554
No 50
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=22.85 E-value=8.1 Score=31.51 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.2
Q ss_pred eeEEEeCCCCCceeEE
Q 032410 79 FGARFSGAGFRGCCLA 94 (141)
Q Consensus 79 ~GarisGaG~GG~via 94 (141)
|=.=|.|+|.+||++|
T Consensus 18 yD~IIVGsG~aG~v~A 33 (526)
T 3t37_A 18 CDIVIVGGGSAGSLLA 33 (526)
T ss_dssp EEEEEECCSHHHHHHH
T ss_pred eeEEEECccHHHHHHH
Confidence 5567899999999876
No 51
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.52 E-value=9.9 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=9.6
Q ss_pred CCCCCceeEEEecc
Q 032410 85 GAGFRGCCLALVDA 98 (141)
Q Consensus 85 GaG~GG~vial~~~ 98 (141)
|+|+||-++-||..
T Consensus 30 ggggggelmklcee 43 (62)
T 2i7u_A 30 GGGGGGELMKLCEE 43 (62)
T ss_dssp SCSSSCHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 55667778777744
No 52
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=21.43 E-value=1.1e+02 Score=24.07 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHH
Q 032410 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113 (141)
Q Consensus 62 ~pe~d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~ 113 (141)
++.+|.|.+.+.+ .+..|+|+ -|+|-+.......+.+..+. .|.
T Consensus 123 tqGLDgL~eR~~~-y~~~GAKW------R~Vlki~~~~aI~~na~~la-ryA 166 (296)
T 2iqt_A 123 FPELGKLCEEAVG-YHVFGTKM------RSVIKQANEQGIRDIVEQQF-QWG 166 (296)
T ss_dssp CTTHHHHHHHHHH-TTCCEEEE------EEEECSCCHHHHHHHHHHHH-HHH
T ss_pred CCChhHHHHHHHH-hccCCCee------eeeeecCchhHHHHHHHHHH-HHH
Confidence 6899999999987 89999987 57777654333444444433 443
No 53
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.32 E-value=2.1e+02 Score=19.69 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeee
Q 032410 66 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 140 (141)
Q Consensus 66 d~l~~~a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 140 (141)
.++.+.+++.+|..--.++|.- -.|.+.- --+.+-+.+.++-. .+...|+++.+.-+.-.+.|+-+
T Consensus 21 kemirqarkfagtvtytl~gn~---l~i~itg--vpeqvrkelakeae----rl~~efni~v~y~imgsgsgvm~ 86 (170)
T 4hhu_A 21 KEMIRQARKFAGTVTYTLSGNR---LVIVITG--VPEQVRKELAKEAE----RLKAEFNINVQYQIMGSGSGVMV 86 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEETTE---EEEEEES--CCHHHHHHHHHHHH----HHHHHHTCEEEEEEECTTCCEEE
T ss_pred HHHHHHHHhhcceEEEEEeCCE---EEEEEeC--CcHHHHHHHHHHHH----HHHHhcceEEEEEEEeCCceEEE
Confidence 4455667777888777888774 4444432 22233333333222 23335788877777777777643
No 54
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=20.72 E-value=1.9e+02 Score=20.31 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC-----ChhHHHHHHHHhhCC-
Q 032410 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-----SEPLIQLNEILQRAP- 76 (141)
Q Consensus 3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh-----~pe~d~l~~~a~~~~- 76 (141)
..|.+++.++....+..||+...+++...+.+..| +.+..+.+-+-...|.+|+..- ...+.+..+..++ .
T Consensus 8 ~~~~~m~~dd~~dll~~l~~~~~~~~l~~l~~~e~--~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~-~~ 84 (205)
T 3kxr_A 8 LLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQR--QRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRR-IE 84 (205)
T ss_dssp CSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHH--HHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHH-CC
T ss_pred HHHHcCCHHHHHHHHHhCCHHHHHHHHHcCCHHHH--HHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHh-hC
Confidence 45778888999999999999988888776665543 2333233223334566676542 3345555555544 3
Q ss_pred --CceeEEEeCCCCCceeEEEe
Q 032410 77 --GVFGARFSGAGFRGCCLALV 96 (141)
Q Consensus 77 --Ga~GarisGaG~GG~vial~ 96 (141)
+....-++... |-++.++
T Consensus 85 ~~~~~~~~Vvd~~--~~lvGiv 104 (205)
T 3kxr_A 85 LDCNDNLFIVDEA--DKYLGTV 104 (205)
T ss_dssp CTTCCEEEEECTT--CBEEEEE
T ss_pred ccCeeEEEEEcCC--CeEEEEE
Confidence 44444555543 5555555
Done!