RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032410
(141 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 224 bits (573), Expect = 2e-73
Identities = 102/149 (68%), Positives = 117/149 (78%), Gaps = 10/149 (6%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG- 61
P LCNVE EVYEAHK +LE LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASG
Sbjct: 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGL 334
Query: 62 ---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY
Sbjct: 335 SSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEY 394
Query: 113 FELQPELASQLNADSAVLICKPGDCARVI 141
+ QPELAS +N D VLIC+ GDCARV+
Sbjct: 395 EKAQPELASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 92.0 bits (229), Expect = 6e-23
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 19/146 (13%)
Query: 8 VEEEVYEAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS----- 60
V +E + A + E+E P +A+RA H TEN+RV + +A +SG+ +FG+L++ S
Sbjct: 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLR 310
Query: 61 -----GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 115
L L EI A G +GAR +GAGF GC +ALV D E A V EY ++
Sbjct: 311 DDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV 370
Query: 116 QPELASQLNADSAVLICKPGDCARVI 141
A A + + A V
Sbjct: 371 TGLKA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 81.8 bits (203), Expect = 3e-19
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 5 LCNVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--- 60
L + EE ++ + ++ TL KRA H TEN+R K ++A K+G+ + FG+L++AS
Sbjct: 247 LGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVS 306
Query: 61 --------GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
G E L L E + GV GAR +GAGF GC +A+V D+ E V Y
Sbjct: 307 LRDDYEVTGLE-LDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAY 365
Query: 113 FE 114
E
Sbjct: 366 EE 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 72.6 bits (178), Expect = 6e-16
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 7 NVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----- 61
N Y A ++ P + +RA+H +EN RV K ++A K + + FG L++ S
Sbjct: 249 NEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDD 308
Query: 62 ----SEPLI-QLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 116
+ P I +L G G+R +GAGF GC + LV + ++ V +Y +
Sbjct: 309 DYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK- 367
Query: 117 PELASQLNADSAVLICKPG 135
+ L V++ KPG
Sbjct: 368 ----TGLELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 68.5 bits (168), Expect = 1e-14
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNE 70
EV E ++L P L KRA + EN RV K +A K G+ + G+L++ S L E
Sbjct: 218 EVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTES-HWDLADNYE 276
Query: 71 --------ILQRAP--GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
++ A G +GAR +GAGF G +ALVD + E + EY
Sbjct: 277 VSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 64.2 bits (157), Expect = 6e-13
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSE- 63
L +V E + A EL+P +AKRA H TEN R + A +G+ + G+L++ S +
Sbjct: 242 LRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASM 301
Query: 64 --------PLIQ-LNEILQRAPGVF-GARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113
P I L EI++ G G R +G GF GC +ALV + E V +Y
Sbjct: 302 RDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361
Query: 114 ELQPELASQLNADSAVLICKPGDCARVI 141
+ L V CK A
Sbjct: 362 A-----KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 59.9 bits (145), Expect = 2e-11
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSE---------PLIQLNEI 71
+P A+RA H TEN+RV A + G+L++AS + I L
Sbjct: 240 DPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIAD 299
Query: 72 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 111
G GAR +G GF GC +ALV ADRAE+ A VR
Sbjct: 300 SAVRAGALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 43.9 bits (104), Expect = 7e-06
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNS-----QDFGKLISAS-GSEPLI------QLNEI 71
L +RA H ++E +RV + S S + G L++ S S ++ +L E+
Sbjct: 361 LHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEEL 420
Query: 72 LQ--RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113
++ R G GAR +GAG+ GC +ALV + ++ +++
Sbjct: 421 VKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 34.4 bits (79), Expect = 0.003
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 70 EILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVRSEY 112
E L+ G GA+ SG+G AL D + AEE A +R Y
Sbjct: 42 EELREL-GALGAKLSGSGGGPTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 74 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 105
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.1 bits (73), Expect = 0.077
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 62 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 31.1 bits (71), Expect = 0.16
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 29 EHYFTENRRVAKGLE-AWKSGNSQDFGKLISA----------SGSEPLIQLNEILQRAPG 77
+ + + E A ++G+ ++ G+L++ S E L +L E + G
Sbjct: 203 DPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPE-LDELVEAARSL-G 260
Query: 78 VFGARFSGAGFRGCCLALV-DADRAEE 103
GA+ +GAG GC +AL + + AE
Sbjct: 261 ALGAKLTGAGGGGCIIALAKNEEIAET 287
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 29.3 bits (66), Expect = 0.77
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 80 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 128
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 27.9 bits (62), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 38 VAKGLEAWKSGNSQDFGKLISASGSEPLIQ--------LNEILQ--RAPGVFGARFSGAG 87
V++ EA + GN G+L++A+ L Q L+ I+Q R G GA+ SG G
Sbjct: 227 VSEAKEALQKGNLFRVGELMNAN--HDLCQKLTVSCRELDSIVQTCRTYGALGAKMSGTG 284
Query: 88 FRGCCLALVDADRAEEAA 105
G +AL A + A
Sbjct: 285 RGGLVVALA-ASEDQRDA 301
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 27.2 bits (61), Expect = 3.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 16 HKNELEPTLAKRAEHYF 32
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 27.3 bits (61), Expect = 3.2
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 38 VAKGLEAWKSGNSQDFGKL----------ISASGSEPLIQLNEILQRAPGVFGARFSGAG 87
+ A + G+ + G+L + S + L QL EI ++A G GA+ +GAG
Sbjct: 209 TLEAKAALEDGDVESLGELMNINQGLLKALGVSHPK-LDQLVEIARKA-GALGAKLTGAG 266
Query: 88 FRGCCLAL 95
GC +AL
Sbjct: 267 GGGCMIAL 274
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 26.4 bits (59), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 88 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 116
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|227940 COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD)
[Cell envelope biogenesis, outer membrane].
Length = 406
Score = 26.3 bits (58), Expect = 6.0
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 42 LEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR 100
L AW + + A+G EPL L ++R G+ AR GA LV
Sbjct: 66 LAAWAVTPGAELLVVRIAAGGEPLFLLPLEIRRRGGIRVARPLGAPHSDYNHGLVAPAG 124
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 26.4 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 70 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 105
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 25.8 bits (57), Expect = 8.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 62 SEPLIQLNEILQRAPGVFGARFSGAGFRG 90
SE +Q LQRA + AGFR
Sbjct: 42 SEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 25.8 bits (57), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 70 EILQRAPGVFGARFSG 85
E L APGV+ AR++G
Sbjct: 74 EALNGAPGVYSARYAG 89
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 312
Score = 26.0 bits (58), Expect = 8.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 67 QLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVR 109
+L E+L PG G SG+G C AL ++AE+A VR
Sbjct: 247 KLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 25.4 bits (56), Expect = 10.0
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 54 GKLISASGSEPLIQLNEILQRAPGVFGARFSGAG 87
G+L+ S + LN+++ R + G+ +G+G
Sbjct: 4 GRLLDGSEVPVYLDLNKLVSRHFAILGS--TGSG 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,094,911
Number of extensions: 620751
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 40
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)