RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032410
(141 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 128 bits (324), Expect = 9e-37
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 21/149 (14%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG- 61
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S
Sbjct: 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHR 319
Query: 62 ---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 320 SLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379
Query: 113 FELQPELASQLNADSAVLICKPGDCARVI 141
+ + + D A+V+
Sbjct: 380 -----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 126 bits (319), Expect = 5e-36
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG 61
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS
Sbjct: 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASH 333
Query: 62 ----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 111
L L E Q+ GV GAR +GAGF GC +ALV D V
Sbjct: 334 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQV 393
Query: 112 YFELQPELASQLNADSAVLICKPGDCARVI 141
Y E + ++ + + G + +
Sbjct: 394 YEE-------VVGYPASFYVAQIGSGSTKL 416
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 119 bits (300), Expect = 1e-33
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG-------- 61
+EV E ++L P K + EN RV + +A K GN ++ GK+++ +
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 62 --SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 119
+ L E G +GAR +GAGF G +ALVD + AE + EY + P
Sbjct: 278 VSCKELDFFVERA-LKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336
Query: 120 ASQLNADSAVLICKPGDCARV 140
A I +P D +
Sbjct: 337 AR-------HFIVEPSDGVGI 350
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 83.0 bits (205), Expect = 1e-19
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGSEPL 65
+ + ++ L L +RA+H ++E RV K E Q G+L++ S
Sbjct: 333 TQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSH-MSC 391
Query: 66 IQLNEI----------LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 115
+ E + R G G+R +GAG+ GC +++V AD+ + V Y++
Sbjct: 392 RDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451
Query: 116 QPELASQLNADSAVLICKPGDCARVI 141
+ ++ KPG A V+
Sbjct: 452 SDGSLAPEKQ--SLFATKPGGGALVL 475
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 73.1 bits (180), Expect = 2e-16
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS---------GSEPLIQLNEILQRAP 76
+ + F E +V EA K N +DFGKL++ + + L ++ +I
Sbjct: 216 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGN--R 271
Query: 77 GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 272 FGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 71.3 bits (174), Expect = 1e-15
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 14 EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISAS------ 60
L +RA+H ++E+ RV K L+ S DFG+L++ S
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431
Query: 61 ----GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA---DRAEEAASYVRSEYF 113
Q+ I A G FG+R +GAG+ GC + LV + E+ + +++
Sbjct: 432 LYECSCIETNQICSIA-LANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFY 490
Query: 114 ELQPELASQLNADSAVLICKPGDCARVI 141
++ + A+++ KP +
Sbjct: 491 NVRYPDLTDEELKDAIIVSKPALGTCLY 518
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 59.1 bits (143), Expect = 2e-11
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 18/123 (14%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISA--------- 59
+ K E + A G+ +F +++
Sbjct: 210 SAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA 269
Query: 60 ---SGSEPLIQLNEILQRA--PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114
+ + E A G + SGAG G + +V+ R EE + +
Sbjct: 270 GAITNPM----IQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGF 325
Query: 115 LQP 117
+ P
Sbjct: 326 VMP 328
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 57.8 bits (140), Expect = 6e-11
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--------- 60
+ V + HK + + + Y V++ EA + G+ Q G+L++A+
Sbjct: 203 KVVNDVHKMKQQ-QPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQIDV 261
Query: 61 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQPEL 119
L + + R G GA+ SG G G +AL + D+ + ++++ E
Sbjct: 262 SCRELESIVQTC-RTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE----- 315
Query: 120 ASQLNADSAVLICKPGDCARV 140
+P + +
Sbjct: 316 ----AKFIWRYTVQPSAASNL 332
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 57.4 bits (139), Expect = 6e-11
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 37 RVAKGLEAWKSGNSQDFGKLISAS---------GSEPLIQLNEILQRAPGVFGARFSGAG 87
+ A +++ G+++S + S L E + G GA+ SG G
Sbjct: 199 LTQQAEIAISQKDAEGLGQILSQAHLHLKEIGVSSLEADSLVETA-LSHGALGAKMSGGG 257
Query: 88 FRGCCLALV-DADRAEEAASYVRSEYFE 114
GC +ALV + A+E A + +
Sbjct: 258 LGGCIIALVTNLTHAQELAERLEEKGAV 285
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 57.4 bits (139), Expect = 7e-11
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--------- 60
+ V++ HK +P +H + V + + + + + +
Sbjct: 189 QAVHDVHKLCEDPQYMSHVKH---IGKLVLRASDVIEHHKFEALADIFNECHADLKALTV 245
Query: 61 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVRSEYFE 114
+ + QL +I + G + +GAG G L L D A+ V
Sbjct: 246 SHDKIEQLMKIG-KENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAA 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 3e-07
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 39/146 (26%)
Query: 8 VEE--EVYEAHKNELEP-------TLAKRAEHYFTENRRVAKGL--EAWKSGNS----QD 52
EE ++Y+ + + TL++ + +GL W S +D
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 53 FGKLISASGSEPLIQLN---------EILQRAPGVFGARFSGAGFRGCCLALVDADRAEE 103
+ L+S S PLI + ++L PG + GA G LV A
Sbjct: 230 Y--LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGLVTA--VAI 283
Query: 104 AASYVRSEYFELQPELASQLNADSAV 129
A + +F + A+
Sbjct: 284 AETDSWESFFV---------SVRKAI 300
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 41.4 bits (96), Expect = 3e-05
Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 11/109 (10%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG--------SEP 64
+ P L R + + A +L+ +
Sbjct: 254 LIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHA 313
Query: 65 LIQLNEILQRA-PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
L+++ Q ++ +GAG GC + L+ +
Sbjct: 314 --SLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 38.8 bits (90), Expect = 3e-04
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 26 KRAEHYFTE-NRRVAKGLEAWKSGNSQDFGKLIS---------ASGSEPLI---QLNEIL 72
K +H+ T N + + ++A+ + + + I + + I L E+
Sbjct: 242 KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301
Query: 73 QRAPGV-FGARFSGAGFRGCCLALVDADRAEEA 104
A + + SG+G C +A E
Sbjct: 302 DSAENMGGAGKSSGSGGGDCGIAFSKTKELAEK 334
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 36.5 bits (84), Expect = 0.001
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 38 VAKGLEAWKSGNSQDFGKLI-----------SASGSEPLIQLNEILQRAPGVFGARFSGA 86
V +EA + G S+ + + + + L QL E Q V A+ SGA
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV--AKSSGA 295
Query: 87 GFRGCCLALVDADRAEEA 104
G C +AL ++ +
Sbjct: 296 GGGDCGIALSFDAQSTKT 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.7
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 51 QDFGKLIS-----ASGSEPLIQLNEILQ 73
Q KL + A S P + + ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 25.9 bits (57), Expect = 6.2
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 79 FGARFSGAGFRGCCLALVDADRA-EEAASYVRSEYFELQPE 118
F S G + R + AA +R Y+++ E
Sbjct: 572 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 612
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 25.7 bits (57), Expect = 6.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENR 36
H EL+ +RA E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 25.8 bits (56), Expect = 6.8
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 38 VAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 97
V G++ + D+ KLI G++P+ E L+R V G +G + D
Sbjct: 32 VEGGVDEQGRAQNIDYDKLIKQFGTKPV--NEETLKRFKQVTGREPHHFLRKGLFFSERD 89
Query: 98 ADRAEEA 104
+ +
Sbjct: 90 FTKILDL 96
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
{Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
2gsk_A* 1nqf_A*
Length = 594
Score = 25.5 bits (56), Expect = 6.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 68 LNEILQRAPGVFGARFSGAG 87
+N++L+R PGV + G+G
Sbjct: 42 VNDVLRRLPGVDITQNGGSG 61
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 25.7 bits (57), Expect = 6.9
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 81 ARFSGAGFRGCCLALVDADRAEEAAS 106
+ G G A+ D D + A
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 25.6 bits (55), Expect = 7.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 76 PGVFGARFSGAG---FRGCCLALVDADRAEEAASYVRS-EYFEL 115
P + +FS G +G AL+ E R Y EL
Sbjct: 560 PDIDINKFSYVGNSSLKGARKALLSRKACAEVKEIARKMTYLEL 603
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
structural genomics, joint center for structural
genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 25.2 bits (56), Expect = 8.4
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 70 EILQRAPGVFGARFSG 85
L PGV ARF
Sbjct: 86 YSLGGFPGVMSARFME 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,124,328
Number of extensions: 115422
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 43
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)