RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032410
(141 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 90.5 bits (224), Expect = 2e-24
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 5 LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--- 60
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS
Sbjct: 43 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 102
Query: 61 -------GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113
L L E Q+ GV GAR +GAGF GC +ALV D V Y
Sbjct: 103 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 162
Query: 114 ELQPELASQLNADSAVLICKPGDCARVI 141
E + ++ + + G + +
Sbjct: 163 E-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 85.5 bits (211), Expect = 2e-22
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG--- 61
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S
Sbjct: 39 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSL 98
Query: 62 -------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114
L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 99 RDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-- 156
Query: 115 LQPELASQLNADSAVLICKPGDCARVI 141
+ + + D A+V+
Sbjct: 157 ---------GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 75.2 bits (184), Expect = 1e-18
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS---------- 60
EV E +L P K + EN RV + +A K G+ + GK+++ +
Sbjct: 41 EVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRV 100
Query: 61 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELA 120
E L + G +GAR +GAGF G +ALVD D+A+ + EY
Sbjct: 101 SCEELDFFVKKA-MELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA------ 153
Query: 121 SQLNADSAVLICKPGDCA 138
+ + + + KP D
Sbjct: 154 -KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 51.9 bits (124), Expect = 5e-10
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG--------SEPLIQLNEILQRAPG 77
+ + F E +V EA K N +DFGKL++ + S P + +
Sbjct: 36 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNR-F 92
Query: 78 VFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 114
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 93 GFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 41.5 bits (97), Expect = 6e-06
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISAS--------- 60
+ P L + E RV + A +L+ +
Sbjct: 27 SRLIKFPEIMAPLL-TSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGV 85
Query: 61 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
G L QL ++ ++ +GAG GC + L+ +
Sbjct: 86 GHASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.8 bits (62), Expect = 0.22
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 68 LNEILQRAPGVFGARFSGAGFRG 90
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA
{Escherichia coli [TaxId: 562]}
Length = 714
Score = 28.5 bits (61), Expect = 0.29
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 68 LNEILQRAPGVFGARFSGAGFRG 90
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 28.0 bits (61), Expect = 0.41
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 79 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 118
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter
BtuB {Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.9 bits (60), Expect = 0.52
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 68 LNEILQRAPGVFGARFSGAG------FRG 90
+N++L+R PGV + G+G RG
Sbjct: 39 VNDVLRRLPGVDITQNGGSGQLSSIFIRG 67
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 23.9 bits (51), Expect = 10.0
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKS 47
VY A K L P L AE+Y + + +
Sbjct: 55 GFVYIAGKCGLVPVL---AENYNKSDNCEDTPEAGYFA 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,533
Number of extensions: 19877
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 15
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)