BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032412
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Query: 1 MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
M I D + S KK LF CPFWQ +T + SS+ + QN + N + + S+P
Sbjct: 1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60
Query: 60 TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119
Query: 120 SCYMRPPGGVLAPGDSIIAT 139
SCYMRPPGGVLAPG+S+ AT
Sbjct: 120 SCYMRPPGGVLAPGESVFAT 139
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 71/78 (91%)
Query: 62 TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
+VS VA+S LP +RRL+LDPS LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93 SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152
Query: 122 YMRPPGGVLAPGDSIIAT 139
+MRPPG +LAPG++IIAT
Sbjct: 153 FMRPPGAILAPGETIIAT 170
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 62 TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
++S VARSLLP +RRL+LDPS LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85 SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144
Query: 122 YMRPPGGVLAPGDSIIAT 139
+MRP G +LAPG+ IIAT
Sbjct: 145 FMRPAGAILAPGEEIIAT 162
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 83 NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSII 137
+ L F +E KQ+ +++ N ++++VAFK +TT+PK ++RP GV+ P DS I
Sbjct: 15 DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCI 69
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 84 NLYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
L FP+E KQ+ +++L N T+ VAFK +TT P+ +RP GV+ PGDS
Sbjct: 13 ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDS 65
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 85 LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
L F + KQT V+L NT+ +VAFK +TT+PK +RP GV+AP
Sbjct: 13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 29 ATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFP 88
++PS+S S N + P VG+ + R + + L +DP + + FP
Sbjct: 143 SSPSASVSDKGNASEVFVGPSVGIVDLIRMSDEL--------------LIIDPVD-VQFP 187
Query: 89 YEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
E K+ ++ L N ++++VAFK +TT K Y+RP GV+ P S
Sbjct: 188 IELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS 234
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
++ FP E KQ ++ L N + ++VAFK QTT PK ++P GV+ P S
Sbjct: 13 DIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS 64
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
L +DP + L FP+E KQ ++ L N + ++VAFK +TT PK +RP GV+ P
Sbjct: 6 LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
+L FP+E KQ ++ L N + ++VAFK +TT PK +RP GV+ P
Sbjct: 29 DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLP 77
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 26 STTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNL 85
S P+ S S + S + + V + ++ K +S LL + P+ L
Sbjct: 283 SNEEPPALSEKSNPTESVSKKDENEKVDSKTKTFKKPLSVFKGPLL------HISPAEEL 336
Query: 86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
YF + ++ + L N +K+ VAFK +TTAP+ ++P PG SI
Sbjct: 337 YFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L + P+ LYF + ++ + L N +K+ VAFK +TTAP+ ++P PG S+
Sbjct: 328 LHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPG 133
L LDP ++L F + ++L+N S V FK +TTAP+ +RP GV+ PG
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPG 71
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L LDP +L F + ++L+N S V FK +TTAP+ +RP G++ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTV 74
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2 SV=2
Length = 126
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2 SV=2
Length = 126
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2 SV=2
Length = 126
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
VR+ N + + F F+TT PK M PP GVL P +S+
Sbjct: 31 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPG 133
L LDP ++L F + ++L+N S V FK +TTAP+ +RP G++ PG
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPG 71
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 93 KQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+Q+ + N S +AFK +TTAPK +RP V+APG++I
Sbjct: 19 EQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETI 62
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPG 133
+ L L+P+ L F + ++L N + + FK +TTAPK +RP G+L P
Sbjct: 5 EQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPK 64
Query: 134 DSI 136
SI
Sbjct: 65 TSI 67
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
L ++P L FP+E KQ ++ L N + ++VAFK +TT + +RP G++ P
Sbjct: 7 LEIEPMY-LQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILP 61
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+ L+ + + FP + + + L+NT+ + FK +TTAPK +RP GG + ++
Sbjct: 1 MALECDSTIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAV 60
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP G++ G SI
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TTAP+ +RP GV+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASL 67
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
L L+P + L F + ++L N + +V FK +TT P+ +RP GV+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASL 67
>sp|Q8CBY1|SMAG1_MOUSE Protein Smaug homolog 1 OS=Mus musculus GN=Samd4a PE=1 SV=2
Length = 711
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGV-PNSSRPAT-KTV 63
+H R NSD KL G WQ S + SAS+ Q+ + N HV + +SS PAT T+
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICISASNWQDKSLGCENGHVPLYSSSSVPATINTI 232
Query: 64 SYVARSLL-------PPRRRLRLDPSNNL 85
A ++L P +R + L P N+
Sbjct: 233 GTGASTILSGQAHHSPLKRSVSLTPPMNV 261
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+R+ P L F KQ+ ++L+N + V FK +T+AP +RP ++ +S+
Sbjct: 1 MRIVPEK-LVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESV 59
>sp|Q9UTD0|FOLD_SCHPO Probable folylpolyglutamate synthase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=fol3 PE=3 SV=1
Length = 417
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 23/133 (17%)
Query: 21 PFWQTSTTATPSSSASSTQNLTTSSSN------------PHV--GVPNSSRPATKTVSYV 66
P W T+T +TP QNL + + PHV GV N+S P + V
Sbjct: 221 PNWGTNTFSTPLKGDYQGQNLACAVTALDILSSSFSIMLPHVQNGVKNTSWPGRLDIRSV 280
Query: 67 ARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP 126
P + D ++N E K S R N S S V F T + M+
Sbjct: 281 -----PSLGDILFDGAHNKEAAIELAKFVNSQRREHNKSVSWVV-AFTNTKDVTGIMKI- 333
Query: 127 GGVLAPGDSIIAT 139
+L GD++IAT
Sbjct: 334 --LLRKGDTVIAT 344
>sp|Q0P5G1|TONSL_BOVIN Tonsoku-like protein OS=Bos taurus GN=TONSL PE=2 SV=1
Length = 1374
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 21 PFWQTSTTATPSSSASSTQNLTTSSSN-PHVGVPNSSRPATKTVSYVARSLLPPRRRLRL 79
P+ ++ +T + A+S S + P V P P T ++ +LPP R+R+
Sbjct: 878 PYLESWSTPVRADRANSQATEPARSPDVPRVVAPTGENPTT---GHLPGQVLPPPIRVRV 934
Query: 80 DPSNNLYFPYEPGKQTRSAVRL-KNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
+NL+ P ++ S L + ++ H ++ P+ ++ G +LAP D I
Sbjct: 935 RVQDNLFLIPVPHREAHSVAWLAEQAAQRH--YQASGLLPR-LSLQKEGALLAPQDPI 989
>sp|Q95LV5|SMAG1_MACFA Protein Smaug homolog 1 OS=Macaca fascicularis GN=SAMD4A PE=2 SV=2
Length = 718
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSS 56
+H R NSD KL G WQ S + +AS+ Q+ + N HV + +SS
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICINASNWQDKSMGCENGHVPLYSSS 223
>sp|Q9UPU9|SMAG1_HUMAN Protein Smaug homolog 1 OS=Homo sapiens GN=SAMD4A PE=1 SV=3
Length = 718
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSS 56
+H R NSD KL G WQ S + +AS+ Q+ + N HV + +SS
Sbjct: 177 YHQRQNSDDKLNG----WQNSRDSGICINASNWQDKSMGCENGHVPLYSSS 223
>sp|B5DF21|SMAG1_RAT Protein Smaug homolog 1 OS=Rattus norvegicus GN=Samd4a PE=1 SV=1
Length = 610
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 6 WHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGV-PNSSRPAT 60
+H R NS+ KL G WQ S + SAS+ Q+ + N HV + +SS PAT
Sbjct: 76 YHQRQNSEDKLNG----WQNSRDSGICISASNWQDKSLGCENGHVPLYSSSSVPAT 127
>sp|O83464|EFG2_TREPA Elongation factor G 2 OS=Treponema pallidum (strain Nichols)
GN=fusB PE=3 SV=1
Length = 683
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 57 RPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF----- 111
R A + YV R L + P + Y P Q R AV + K F
Sbjct: 242 RKAVRERRYVPFLCGSSRHNLGVQPLLDAVVEYLPAPQERKAVEGFHVQKKEPVFIAPTA 301
Query: 112 -----------KFQTTAPKSCYMRPPGGVLAPGDSIIATG 140
+++ A CY+R G L GDSI+ G
Sbjct: 302 EGPLLALVFKIQYEREAGLLCYVRMYSGKLRTGDSIVNIG 341
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 77 LRLDPSNNLYFPYEP-GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
+ ++ S L+F Y P ++ + + N + V FK +TTAPK +RP G + P +
Sbjct: 1 MSVECSGELFF-YPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKST 59
Query: 136 I 136
+
Sbjct: 60 V 60
>sp|Q9VTE0|BL1S2_DROME Biogenesis of lysosome-related organelles complex 1 subunit 2
OS=Drosophila melanogaster GN=blos2 PE=1 SV=2
Length = 159
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 33 SSASSTQNLTTSSSNPHVGVPNSSRPATK----TVSYVARSLLPPRRRLRLDPSNNLYFP 88
SSASS + LT PN SR ATK T Y+ L P +L N
Sbjct: 30 SSASSFEALTRHD-------PNLSRLATKMFNKTEEYITHELNAPLEDYKLLEEMN-KAT 81
Query: 89 YEPGKQTRSAVRLKNTSKSHVAFKFQTTAP 118
K R NTS S ++ KFQ AP
Sbjct: 82 IAKYKDMRQIAENLNTSTSELSLKFQQLAP 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,755,982
Number of Sequences: 539616
Number of extensions: 1886113
Number of successful extensions: 9925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 8803
Number of HSP's gapped (non-prelim): 1046
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)