Query 032412
Match_columns 141
No_of_seqs 135 out of 528
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msp_A MSP, major sperm protei 99.9 1.8E-23 6.1E-28 155.0 9.1 66 75-140 7-72 (126)
2 1z9l_A Vesicle-associated memb 99.9 2.3E-23 7.9E-28 153.4 9.3 68 73-140 7-74 (128)
3 2cri_A Vesicle-associated memb 99.9 2.3E-23 8E-28 157.4 8.4 68 73-140 11-78 (147)
4 1wic_A Hypothetical protein ri 99.9 2E-23 6.8E-28 159.4 7.3 68 73-140 15-82 (152)
5 1row_A SSP-19, MSP-domain prot 99.8 2.5E-21 8.6E-26 141.4 7.5 60 77-140 3-62 (109)
6 1m1s_A WR4; structural genomic 99.8 2.4E-20 8.1E-25 138.4 8.4 61 76-140 10-70 (116)
7 2ys4_A Hydrocephalus-inducing 98.3 2.3E-06 7.9E-11 61.3 7.1 61 76-140 25-86 (122)
8 3qbt_B Inositol polyphosphate 97.9 3.8E-05 1.3E-09 57.1 8.4 65 75-140 25-96 (140)
9 2e6j_A Hydin protein; PAPD, st 97.9 2.7E-05 9.2E-10 54.0 6.4 65 75-140 8-76 (112)
10 3qis_A Inositol polyphosphate 97.4 0.00051 1.7E-08 57.9 8.6 67 73-140 26-99 (366)
11 2qsv_A Uncharacterized protein 96.5 0.01 3.5E-07 46.2 7.9 63 76-140 2-65 (220)
12 2qsv_A Uncharacterized protein 95.7 0.041 1.4E-06 42.7 7.9 64 74-140 117-181 (220)
13 3q48_A Chaperone CUPB2; IG fol 83.2 3 0.0001 33.6 6.6 61 76-140 29-99 (257)
14 1yew_A Particulate methane mon 81.2 9.3 0.00032 33.2 9.2 67 72-140 245-332 (382)
15 2xg5_A PAPD, chaperone protein 78.4 11 0.00038 29.3 8.2 60 77-140 2-69 (218)
16 3rfr_A PMOB; membrane, oxidore 77.3 6.8 0.00023 34.3 7.2 62 75-140 282-364 (419)
17 2r39_A FIXG-related protein; s 77.1 7.1 0.00024 27.2 6.2 57 84-140 21-79 (118)
18 2co7_B SAFB chaperone, putativ 77.0 7.9 0.00027 30.3 7.0 60 77-140 14-78 (221)
19 1klf_A FIMC chaperone, chapero 72.4 13 0.00045 28.6 7.1 60 77-140 2-67 (205)
20 4djm_A DRAB; chaperone, PILI; 70.3 12 0.00042 29.7 6.7 61 76-140 23-88 (239)
21 1l4i_A SFAE protein; periplasm 68.6 17 0.00058 28.0 7.0 60 77-140 2-67 (206)
22 4ay0_A Chaperone protein CAF1M 65.4 32 0.0011 26.8 8.1 61 76-140 13-80 (218)
23 2g30_A AP-2 complex subunit be 64.8 5.1 0.00018 32.3 3.5 61 74-140 41-107 (258)
24 3jt0_A Lamin-B1; structural ge 62.5 27 0.00094 25.9 6.9 41 98-138 39-84 (144)
25 3idu_A Uncharacterized protein 58.3 20 0.00067 25.9 5.3 50 90-140 30-80 (127)
26 3gfu_C Chaperone protein FAEE; 53.4 57 0.002 25.7 7.7 60 77-140 2-68 (224)
27 3hs8_A Adaptor protein complex 52.8 24 0.00083 28.5 5.5 49 92-140 67-122 (273)
28 3hn9_A Lamin-B1; structural ge 48.0 30 0.001 24.9 4.8 40 98-138 26-71 (123)
29 3zy7_A AP-1 complex subunit ga 47.5 24 0.00082 25.1 4.2 45 71-115 54-98 (122)
30 3e38_A Two-domain protein cont 46.0 23 0.00078 29.5 4.4 42 97-140 270-311 (343)
31 2xzz_A Protein-glutamine gamma 46.0 63 0.0022 22.3 6.2 45 92-140 19-69 (102)
32 1gyu_A Adapter-related protein 37.0 42 0.0014 24.5 4.2 45 71-115 72-116 (140)
33 1ifr_A Lamin A/C; immunoglobul 35.5 74 0.0025 22.7 5.3 41 98-138 20-66 (121)
34 2e9g_A AP-1 complex subunit ga 34.1 38 0.0013 24.3 3.5 45 71-115 63-107 (131)
35 1wm3_A Ubiquitin-like protein 32.6 45 0.0015 21.0 3.3 21 98-118 3-23 (72)
36 4gio_A Putative lipoprotein; u 32.4 92 0.0031 21.7 5.2 48 92-139 35-88 (107)
37 3o0l_A Uncharacterized protein 31.5 1.1E+02 0.0037 21.4 5.5 49 91-139 36-91 (112)
38 3vta_A Cucumisin; subtilisin-l 30.8 1.5E+02 0.005 26.1 7.4 47 94-140 538-587 (621)
39 3mnm_A ADP-ribosylation factor 30.4 1.1E+02 0.0037 21.7 5.4 45 71-115 56-103 (123)
40 1so9_A Cytochrome C oxidase as 28.9 1.9E+02 0.0066 22.0 7.2 44 91-140 60-118 (164)
41 1iu1_A Gamma1-adaptin; coated 28.6 55 0.0019 23.9 3.7 44 71-114 78-121 (146)
42 2d9y_A Pleckstrin homology dom 28.4 40 0.0014 21.8 2.6 51 73-124 29-90 (117)
43 2io0_B Small ubiquitin-related 28.1 59 0.002 21.8 3.5 22 97-118 6-27 (91)
44 2lll_A Lamin-B2; immunoglobuli 28.0 93 0.0032 22.9 4.8 41 98-138 35-81 (139)
45 1klf_A FIMC chaperone, chapero 27.9 1.4E+02 0.0048 22.7 6.1 48 83-140 129-177 (205)
46 3nrf_A APAG protein; structura 25.5 1.8E+02 0.0062 20.8 5.8 43 95-137 29-81 (106)
47 2yry_A Pleckstrin homology dom 25.2 65 0.0022 20.9 3.3 51 73-124 40-101 (122)
48 1kyf_A Alpha-adaptin C; protei 24.2 1.8E+02 0.0063 22.7 6.2 49 92-140 41-96 (247)
49 2io1_B Small ubiquitin-related 23.2 82 0.0028 21.1 3.5 23 96-118 7-29 (94)
50 3ndz_E Endoglucanase D; cellot 23.1 1.5E+02 0.005 20.6 4.9 45 95-139 17-82 (107)
51 1p4u_A ADP-ribosylation factor 23.1 1.3E+02 0.0043 22.2 4.8 45 71-115 78-126 (153)
52 4ay0_A Chaperone protein CAF1M 23.0 98 0.0034 24.0 4.4 47 84-140 140-187 (218)
53 1pls_A Pleckstrin homology dom 22.4 66 0.0022 20.8 2.8 52 73-124 22-82 (113)
54 1ufg_A Lamin A, nuclear lamin; 22.2 1.6E+02 0.0056 21.8 5.3 41 98-138 51-97 (151)
55 2d07_B Ubiquitin-like protein 22.0 90 0.0031 20.8 3.5 24 95-118 16-39 (93)
56 3k67_A Putative dehydratase AF 21.9 1E+02 0.0035 22.4 4.1 37 83-119 108-146 (159)
57 3kyd_D Small ubiquitin-related 21.7 86 0.0029 22.4 3.5 23 96-118 40-62 (115)
58 2dkp_A Pleckstrin homology dom 21.7 61 0.0021 21.3 2.6 51 73-124 39-100 (128)
59 3vta_A Cucumisin; subtilisin-l 21.6 1.2E+02 0.0042 26.6 5.1 52 71-124 561-612 (621)
60 4djm_A DRAB; chaperone, PILI; 20.9 65 0.0022 25.4 3.0 49 83-140 161-210 (239)
61 1u5d_A SKAP55, SRC kinase-asso 20.7 57 0.0019 20.5 2.2 52 73-124 24-86 (108)
62 2pi2_E Replication protein A 1 20.3 2.5E+02 0.0087 20.5 5.9 49 74-125 28-76 (142)
63 2huh_A Putative DNA mismatch r 20.3 1.4E+02 0.0048 22.4 4.5 43 96-139 29-71 (147)
No 1
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.89 E-value=1.8e-23 Score=154.99 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=63.9
Q ss_pred CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 75 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..|.++|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V 72 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAV 72 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEE
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEE
Confidence 369999999999999999999999999999999999999999999999999999999999999987
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.89 E-value=2.3e-23 Score=153.43 Aligned_cols=68 Identities=32% Similarity=0.530 Sum_probs=65.4
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V 74 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV 74 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEE
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEE
Confidence 46789999988999999999999999999999999999999999999999999999999999999987
No 3
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.3e-23 Score=157.45 Aligned_cols=68 Identities=31% Similarity=0.528 Sum_probs=65.5
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V 78 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSV 78 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEE
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEE
Confidence 46789999988999999999999999999999999999999999999999999999999999999987
No 4
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.89 E-value=2e-23 Score=159.40 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=65.5
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V 82 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIV 82 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEE
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEE
Confidence 56789999988999999999999999999999999999999999999999999999999999999987
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.84 E-value=2.5e-21 Score=141.44 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=56.4
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|+|. +|.|.++.+ .+.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I 62 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVI 62 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEE
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEE
Confidence 789997 699998843 699999999999999999999999999999999999999999987
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.82 E-value=2.4e-20 Score=138.38 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=57.3
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
++.++|. +|.|+++.| .+.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I 70 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDI 70 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEE
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEE
Confidence 6889996 999998753 799999999999999999999999999999999999999999987
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.3e-06 Score=61.30 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=51.6
Q ss_pred cEEecCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~e-~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.|.+ | +.|.|..- -+...+..+.|+|.++.++.|++++. .-|.|.|..|.|+||+++.|+|
T Consensus 25 ~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 25 ILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEV 86 (122)
T ss_dssp CCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEE
T ss_pred EECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEE
Confidence 3444 5 58888753 46678899999999999999999984 4699999999999999999987
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.95 E-value=3.8e-05 Score=57.08 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=55.2
Q ss_pred CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeC------CCceeEecCCcceeCCCCEEEEEc
Q 032412 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 75 ~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..|.+++. +|.|-. .+++..+..|+|+|++.-+..|++.-. .+..+.|.|..|.|.||+++.|.|
T Consensus 25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v 96 (140)
T 3qbt_B 25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISL 96 (140)
T ss_dssp CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEE
Confidence 46888885 999973 567778999999999999999999752 345799999999999999999886
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=2.7e-05 Score=53.95 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCCC---ceeEecCCcceeCCCCEEEEEc
Q 032412 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 75 ~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTaP---k~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..+.+++. .|.|-. ..+...+..++|+|+++-++.|++..... ..|.+.|..|.|+||++..|.|
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V 76 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQI 76 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEE
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEE
Confidence 45889985 788864 34667889999999999999999964221 5699999999999999999887
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.43 E-value=0.00051 Score=57.89 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=54.9
Q ss_pred CCCcEEecCCCceEee-CCCCCeeEEEEEEECCCCCeEEEEEeeC------CCceeEecCCcceeCCCCEEEEEc
Q 032412 73 PRRRLRLDPSNNLYFP-YEPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~-~e~~k~v~s~L~LtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
....|.|++. +|.|. -.++...+..|+|+|++.-++.|++... .+..+.|.|..|.|.||+++.|.|
T Consensus 26 ~~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l 99 (366)
T 3qis_A 26 FLPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISL 99 (366)
T ss_dssp --CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred cCCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEE
Confidence 3456889985 99996 3677889999999999999999999753 233478999999999999999876
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.49 E-value=0.01 Score=46.16 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=53.2
Q ss_pred cEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.|++++. .+.|.. +.|+.....+.++|+++.++-++.-.. |..+.+++..+.|+||++..|.|
T Consensus 2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~v 65 (220)
T 2qsv_A 2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNL 65 (220)
T ss_dssp CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEE
T ss_pred ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEE
Confidence 3899995 999985 446667779999999999999987543 88889999999999999988876
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.72 E-value=0.041 Score=42.68 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=53.8
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEE-EEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 74 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAF-KVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
...|.++ . .+.|-.=.|+..+..++|+|..+.++.+ +|++++ +...+.+..+.|+||++..|.|
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v 181 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRI 181 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEE
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEE
Confidence 4468888 4 8888732278888999999999999888 888765 7889999999999999999887
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=83.20 E-value=3 Score=33.61 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=43.4
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C----ceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P----k~Y~VRP~~GiI~Pgesv~ItV 140 (141)
-|.|+|. .+.|+.. +....|+|+|.++.++.-.+-..+ | .-|.|-|+.-.|+||+.-.|.|
T Consensus 29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI 99 (257)
T 3q48_A 29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRI 99 (257)
T ss_dssp --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEE
T ss_pred eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEE
Confidence 4778885 7777643 234799999999987665543221 1 1399999999999999888765
No 14
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=81.23 E-value=9.3 Score=33.15 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=48.7
Q ss_pred CCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEe---------cCC------------ccee
Q 032412 72 PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------RPP------------GGVL 130 (141)
Q Consensus 72 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~V---------RP~------------~GiI 130 (141)
+....+.++-. .-.|.. +|+..+-.++++|.++++|-.+==+|+.-+|.- -|. ..=|
T Consensus 245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI 322 (382)
T 1yew_A 245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 322 (382)
T ss_dssp CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence 34556777774 666664 588999999999999999988866667766643 221 1228
Q ss_pred CCCCEEEEEc
Q 032412 131 APGDSIIATG 140 (141)
Q Consensus 131 ~Pgesv~ItV 140 (141)
+|||+..|.|
T Consensus 323 ~PGETr~~~v 332 (382)
T 1yew_A 323 APGETRTVDV 332 (382)
T ss_dssp CTTCEEEEEE
T ss_pred CCCceeEEEE
Confidence 9999999876
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=78.36 E-value=11 Score=29.33 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=44.3
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeCC-------CceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKTTa-------Pk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|++. .+.|+... -...|+|+|.++. ++.--+..-+ ..-|.|-|+.--|+||+.-.|.|
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI 69 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRL 69 (218)
T ss_dssp EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEE
T ss_pred cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEE
Confidence 567785 77886442 3569999999988 7665543322 22499999999999999988875
No 16
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=77.33 E-value=6.8 Score=34.34 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=46.1
Q ss_pred CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEe---------------------cCCcceeCCC
Q 032412 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------------------RPPGGVLAPG 133 (141)
Q Consensus 75 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~V---------------------RP~~GiI~Pg 133 (141)
..+.++-. .-.|.. +|+..+-.++++|.++++|-..==+|+.-+|.= .|+ -|+||
T Consensus 282 ~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34666664 556664 578999999999999999988865666666651 122 59999
Q ss_pred CEEEEEc
Q 032412 134 DSIIATG 140 (141)
Q Consensus 134 esv~ItV 140 (141)
|+..|+|
T Consensus 358 ETrt~~V 364 (419)
T 3rfr_A 358 ESKEIVV 364 (419)
T ss_dssp CEEEEEE
T ss_pred cceEEEE
Confidence 9999877
No 17
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=77.15 E-value=7.1 Score=27.22 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=38.6
Q ss_pred ceEeeCCCCC-eeEEEEEEECCCCCeEEEEEeeCCCceeEe-cCCcceeCCCCEEEEEc
Q 032412 84 NLYFPYEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGVLAPGDSIIATG 140 (141)
Q Consensus 84 eL~F~~e~~k-~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~V-RP~~GiI~Pgesv~ItV 140 (141)
.|+-....|. +=...|+|.|++.+...|.++....+-+.+ .|..=.|+||+...+.|
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v 79 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPM 79 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEE
Confidence 4555444443 344899999999999999998876444654 35545688999766554
No 18
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=76.97 E-value=7.9 Score=30.27 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=44.2
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC-----CceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA-----PKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa-----Pk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|++. .+.|+... -...|+|+|.++.++.--+..-+ ..-|.|-|+.-.|+||+.-.|.|
T Consensus 14 v~i~~T-RvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI 78 (221)
T 2co7_B 14 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRI 78 (221)
T ss_dssp CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEE
T ss_pred EEEcce-EEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEE
Confidence 678885 77887432 34699999999887655543211 12499999999999999988875
No 19
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=72.39 E-value=13 Score=28.65 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=43.9
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEeeC-----CCceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKTT-----aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|++. .+.|+.. +-...|+|+|.++. ++.--+-.- ...-|.|-|+.--|+||+.-.|.|
T Consensus 2 v~l~~T-RvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI 67 (205)
T 1klf_A 2 VALGAT-RVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRI 67 (205)
T ss_dssp EEESCS-EEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEE
T ss_pred eEecce-EEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 567785 7788644 24579999999987 665554221 123499999999999999988775
No 20
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=70.26 E-value=12 Score=29.70 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=43.4
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeC-----CCceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
-|.|++. .+.|+... -...|+|+|.++.++.--+..- ...-|.|-|+.--|+||+.-.|.|
T Consensus 23 ~v~l~~T-RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRI 88 (239)
T 4djm_A 23 SLHLGAT-RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRI 88 (239)
T ss_dssp CCEESCS-EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEE
T ss_pred eEEEcce-EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 3778885 77776432 3469999999988754433211 122499999999999999888765
No 21
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=68.60 E-value=17 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=43.3
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCC-CeEEEEEeeC-----CCceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~-~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|++. .+.|+.. +-...|+|+|.++ .++.--+..- ...-|.|-|+.--|+||+.-.|.|
T Consensus 2 v~l~~T-RvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI 67 (206)
T 1l4i_A 2 VALGAT-RVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRI 67 (206)
T ss_dssp EEESCS-EEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEE
T ss_pred eEeCce-EEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 567785 7788643 2457999999986 6655544321 112499999999999999888775
No 22
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=65.41 E-value=32 Score=26.84 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeC-------CCceeEecCCcceeCCCCEEEEEc
Q 032412 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-------APKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-------aPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
-|.|+-. .+.|+.. +....|+|+|.++.++.--...- ...-|.|-|+.--|+||+.-.|.|
T Consensus 13 gv~l~~T-RvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI 80 (218)
T 4ay0_A 13 GVTIGES-RIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRI 80 (218)
T ss_dssp CEEESCC-EEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEE
T ss_pred eEEECce-EEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEE
Confidence 3777775 7777643 23568999999988765543321 112399999999999999988875
No 23
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=64.81 E-value=5.1 Score=32.31 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeE-EEEEeeCCCceeEecCCc-----ceeCCCCEEEEEc
Q 032412 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPG-----GVLAPGDSIIATG 140 (141)
Q Consensus 74 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~V-AFKVKTTaPk~Y~VRP~~-----GiI~Pgesv~ItV 140 (141)
++-|.|+= .|.+. +.++.-.|+++|.+..++ -|.|+- +...|-+-|.. .-|+||+++++.|
T Consensus 41 g~GLeI~g----~f~r~-~g~i~l~l~~~N~s~~~is~faIQf-NkNsFGL~p~~~~~~~~~L~pgqs~~v~l 107 (258)
T 2g30_A 41 AKGLEISG----TFTHR-QGHIYMEMNFTNKALQHMTDFAIQF-NKNSFGVIPSTPLAIHTPLMPNQSIDVSL 107 (258)
T ss_dssp TTTEEEEE----EEEEE-TTEEEEEEEEEECSSSCBCCCEEEE-CCBTTCCEESSCCCCCSCBCTTCEEEEEE
T ss_pred CCcEEEEE----EEEEe-CCEEEEEEEEecCCccceeeeEEEE-cccccCcccCccccCCCccCCCCcEEEEE
Confidence 45566655 45555 456778999999999853 244443 33344444432 3499999988765
No 24
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=62.50 E-value=27 Score=25.94 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=25.6
Q ss_pred EEEEECCCCCeEE---EEEeeCCCc--eeEecCCcceeCCCCEEEE
Q 032412 98 AVRLKNTSKSHVA---FKFQTTAPK--SCYMRPPGGVLAPGDSIIA 138 (141)
Q Consensus 98 ~L~LtN~S~~~VA---FKVKTTaPk--~Y~VRP~~GiI~Pgesv~I 138 (141)
.++|.|.+++.+. |+|+=...+ ..+.=|+.=+|+||+++.|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 5778888877553 555422221 1234466668999999887
No 25
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=58.30 E-value=20 Score=25.92 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCCCeeEEEEEEECCCCC-eEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 90 EPGKQTRSAVRLKNTSKS-HVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 90 e~~k~v~s~L~LtN~S~~-~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..|+.++..++++|.... -=+|+|+-...+...-.-..+ |+||++..|++
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f 80 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTF 80 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEE
Confidence 358889999999999987 467888866666654333333 99999988765
No 26
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=53.36 E-value=57 Score=25.66 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEE--EeeCC----CceeEecCCcceeCCCCEEEEEc
Q 032412 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFK--FQTTA----PKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFK--VKTTa----Pk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
|.|+.. .+.|+.. +-...|.|+|..+. ++.-. |..-. ..-|.|-|+.--|+||+.-.|.|
T Consensus 2 ~~l~~T-RvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRI 68 (224)
T 3gfu_C 2 LAVDQT-RYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRI 68 (224)
T ss_dssp EECSCS-EEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEE
T ss_pred ccccce-EEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEE
Confidence 456774 7777643 23469999999876 43222 22211 12399999999999999888765
No 27
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=52.82 E-value=24 Score=28.53 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCeeEEEEEEECCCCCeEE-EEEeeCCCc----ee--EecCCcceeCCCCEEEEEc
Q 032412 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPK----SC--YMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 92 ~k~v~s~L~LtN~S~~~VA-FKVKTTaPk----~Y--~VRP~~GiI~Pgesv~ItV 140 (141)
+...+-.|.+.|++..++. |++.-..++ .+ .++|.-..|+|++.+...|
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i 122 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVV 122 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEE
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEE
Confidence 3467788999999988765 666544444 33 4567678999999876544
No 28
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=47.99 E-value=30 Score=24.86 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=27.1
Q ss_pred EEEEECCCCCeEE---EEEeeCCCc---eeEecCCcceeCCCCEEEE
Q 032412 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (141)
Q Consensus 98 ~L~LtN~S~~~VA---FKVKTTaPk---~Y~VRP~~GiI~Pgesv~I 138 (141)
.++|.|.+++.+. |+++-...+ .|+. |+.=+|+||+++.|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 5788888877654 677543332 3444 66668999999887
No 29
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=47.49 E-value=24 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT 115 (141)
.|+.-.|.+.|..-=..+.-.+..++..|+|.|....++--|+|-
T Consensus 54 VPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kl 98 (122)
T 3zy7_A 54 VPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 98 (122)
T ss_dssp CCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEE
T ss_pred cCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEE
Confidence 466778999998533444323567999999999987766555553
No 30
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=46.02 E-value=23 Score=29.46 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=36.5
Q ss_pred EEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 97 s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
-.+.|+|.++- -|.++-+.+..|.+.++.--|+|+++..+.|
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRI 311 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEE
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEE
Confidence 47888888876 5777788999999999999999999998876
No 31
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=46.01 E-value=63 Score=22.28 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=33.5
Q ss_pred CCeeEEEEEEECCCCC---eEEEEEeeCCC---ceeEecCCcceeCCCCEEEEEc
Q 032412 92 GKQTRSAVRLKNTSKS---HVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 92 ~k~v~s~L~LtN~S~~---~VAFKVKTTaP---k~Y~VRP~~GiI~Pgesv~ItV 140 (141)
++...+.+.++|+-.. .+.|-|--..- +.+.+ |-|.||+++.+++
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~~----~~v~pg~~~~~~~ 69 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILNV----GDIGGNETVTLRQ 69 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEEE----CCBCTTCEEEEEE
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEEc----CcCCCCCEEEEEE
Confidence 6789999999999887 55777764333 33433 6699999998775
No 32
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=37.03 E-value=42 Score=24.49 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT 115 (141)
.|+.-.|.+.|..--..+.-.+..++..|+|.|....++.-|+|-
T Consensus 72 VPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~~l~LR~kl 116 (140)
T 1gyu_A 72 VPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 116 (140)
T ss_dssp CCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCEEEEE
T ss_pred cCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 356667888886433333222345899999999977665555553
No 33
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=35.53 E-value=74 Score=22.73 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=26.7
Q ss_pred EEEEECCCCCeEE---EEEeeC-C--CceeEecCCcceeCCCCEEEE
Q 032412 98 AVRLKNTSKSHVA---FKFQTT-A--PKSCYMRPPGGVLAPGDSIIA 138 (141)
Q Consensus 98 ~L~LtN~S~~~VA---FKVKTT-a--Pk~Y~VRP~~GiI~Pgesv~I 138 (141)
.++|.|.+++.+. |+++-. . ...-+.=|+.=+|+||+++.|
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 5778888777554 566543 2 112333466778999999886
No 34
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.09 E-value=38 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT 115 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT 115 (141)
.|+.-.|.+.|..--....-.+..++..|+|.|....++.-|+|-
T Consensus 63 VPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~~~~~l~lR~kl 107 (131)
T 2e9g_A 63 VPKSLQLQLQAPSGNTVPARGGLPITQLFRILNPNKAPLRLKLRL 107 (131)
T ss_dssp CCTTSCCEECCCSCSEECTTTCCCBCCCEEEECTTCCCCCEEEEE
T ss_pred cCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 456778999996544444323345788999999987666555553
No 35
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=32.58 E-value=45 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.4
Q ss_pred EEEEECCCCCeEEEEEeeCCC
Q 032412 98 AVRLKNTSKSHVAFKFQTTAP 118 (141)
Q Consensus 98 ~L~LtN~S~~~VAFKVKTTaP 118 (141)
.|+++......|.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999987766
No 36
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=32.35 E-value=92 Score=21.74 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=37.2
Q ss_pred CCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCC------cceeCCCCEEEEE
Q 032412 92 GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP------GGVLAPGDSIIAT 139 (141)
Q Consensus 92 ~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~------~GiI~Pgesv~It 139 (141)
+......++++|..+..+.||+.==+.+-+.|.+. .-+|.+++++.|.
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~ 88 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILR 88 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEE
Confidence 34567889999999999999998778888888663 2347788887764
No 37
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=31.48 E-value=1.1e+02 Score=21.44 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred CCCeeEEEEEEECCCCCe--EEEEEeeCCCceeEecCC-cc----eeCCCCEEEEE
Q 032412 91 PGKQTRSAVRLKNTSKSH--VAFKFQTTAPKSCYMRPP-GG----VLAPGDSIIAT 139 (141)
Q Consensus 91 ~~k~v~s~L~LtN~S~~~--VAFKVKTTaPk~Y~VRP~-~G----iI~Pgesv~It 139 (141)
.+...+..+.|+|.++.+ +.||+-==+.+-+-|.|. .. +|.+++++.|.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~ 91 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVT 91 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEE
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEE
Confidence 455678899999999996 899988777888888875 22 37888887764
No 38
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=30.81 E-value=1.5e+02 Score=26.09 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=35.3
Q ss_pred eeEEEEEEECCCCCeEEEEEeeCCCcee--EecCCccee-CCCCEEEEEc
Q 032412 94 QTRSAVRLKNTSKSHVAFKFQTTAPKSC--YMRPPGGVL-APGDSIIATG 140 (141)
Q Consensus 94 ~v~s~L~LtN~S~~~VAFKVKTTaPk~Y--~VRP~~GiI-~Pgesv~ItV 140 (141)
.++..-+++|.....-.||++.+.|.-. .|.|..=.+ +.||+..++|
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~v 587 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTL 587 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEE
Confidence 4455668999999999999998888754 566887766 4688766554
No 39
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=30.43 E-value=1.1e+02 Score=21.66 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCC---CCeEEEEEee
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTS---KSHVAFKFQT 115 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S---~~~VAFKVKT 115 (141)
.|+.-.|.+.|..-=..+.-....++..|+|.|+. ..++--|+|-
T Consensus 56 VPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~~~~~~~~lklR~kl 103 (123)
T 3mnm_A 56 VPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPSKALXVKWKV 103 (123)
T ss_dssp CCTTSEEEECCCSCSCBCTTCTTCEEEEEEEESCCCC---CCEEEEEE
T ss_pred cCcccEEEeECCCcCccCCCCCCCEEEEEEEecCCCCCCCCEEEEEEE
Confidence 46677899999754333332236799999999876 4555555553
No 40
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=28.88 E-value=1.9e+02 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcc---------------eeCCCCEEEEEc
Q 032412 91 PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGG---------------VLAPGDSIIATG 140 (141)
Q Consensus 91 ~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~G---------------iI~Pgesv~ItV 140 (141)
+|......-+.+|.++++|. .--.|.|.|... .|.|||+++.-|
T Consensus 60 pGE~~~~~y~a~N~sd~~i~------G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV 118 (164)
T 1so9_A 60 IGETVQIMYRAKNLASTPTT------GQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPV 118 (164)
T ss_dssp TTCCCCEEEEEEECSSSCEE------CCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEE
T ss_pred CCCeEEEEEEEECCCCCcEE------EEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeE
Confidence 45666678889999999763 444555555432 589999998765
No 41
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=28.59 E-value=55 Score=23.95 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=29.1
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEe
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQ 114 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVK 114 (141)
.|+.-.|.+.|..-=..+.-.+..++..|+|.|....++.-|+|
T Consensus 78 VPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~~~lklR~k 121 (146)
T 1iu1_A 78 VPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQQLRMRIK 121 (146)
T ss_dssp CCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCCEEE
T ss_pred cCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEE
Confidence 46777899999644334322234589999999987765554444
No 42
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.43 E-value=40 Score=21.77 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCCcEEecCCCceEee-CCCCCeeEEEEEEECC----------CCCeEEEEEeeCCCceeEec
Q 032412 73 PRRRLRLDPSNNLYFP-YEPGKQTRSAVRLKNT----------SKSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~-~e~~k~v~s~L~LtN~----------S~~~VAFKVKTTaPk~Y~VR 124 (141)
.+++..|... .|.+- .+.+......|.|.+. ...+-+|.|.++..+.|.+.
T Consensus 29 k~R~fvL~~~-~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~ 90 (117)
T 2d9y_A 29 NKRWFVLVDR-CLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFS 90 (117)
T ss_dssp EEEEEEEETT-EEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEEE
T ss_pred eEEEEEECCC-EEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEEE
Confidence 5667888875 55443 3433444455555442 23356888877666666654
No 43
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=28.07 E-value=59 Score=21.80 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEEECCCCCeEEEEEeeCCC
Q 032412 97 SAVRLKNTSKSHVAFKFQTTAP 118 (141)
Q Consensus 97 s~L~LtN~S~~~VAFKVKTTaP 118 (141)
-.|+++......|.||||.+.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4788888888899999997766
No 44
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.96 E-value=93 Score=22.87 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=26.1
Q ss_pred EEEEECCCCCeEE---EEEeeCCCc---eeEecCCcceeCCCCEEEE
Q 032412 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (141)
Q Consensus 98 ~L~LtN~S~~~VA---FKVKTTaPk---~Y~VRP~~GiI~Pgesv~I 138 (141)
.|+|.|.+++.+. |+|+=...+ .-+.=|+.=+|+||+++.|
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 5778887776553 566543221 2233466778999999886
No 45
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=27.88 E-value=1.4e+02 Score=22.70 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=32.7
Q ss_pred CceEeeCCCCCeeEEEEEEECCCCCeEEEE-EeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 83 NNLYFPYEPGKQTRSAVRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 83 ~eL~F~~e~~k~v~s~L~LtN~S~~~VAFK-VKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..|.|....+ .|+++|++.-+|.|- ++. +.+.+ . .+.|.|+++..+.+
T Consensus 129 ~~L~~~~~~~-----~l~v~Nptpy~vtl~~l~~-~g~~~--~--~~mv~P~s~~~~~l 177 (205)
T 1klf_A 129 EKLRFRRSAN-----SLTLINPTPYYLTVTELNA-GTRVL--E--NALVPPMGESTVKL 177 (205)
T ss_dssp GGCEECCCSS-----EEEEEECSSSCEEEEEEES-SSSBC--C--CEEECTTEEEEEEC
T ss_pred heeEEEEcCC-----EEEEECCCCCEEEEEEEEe-CCccc--c--cceEcCCCcceeec
Confidence 3677765332 599999999999885 333 33332 2 36999999887654
No 46
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=25.50 E-value=1.8e+02 Score=20.81 Aligned_cols=43 Identities=30% Similarity=0.360 Sum_probs=33.9
Q ss_pred eEEEEEEECCCCC-----eEEEEEeeCCCceeEecC-----CcceeCCCCEEE
Q 032412 95 TRSAVRLKNTSKS-----HVAFKFQTTAPKSCYMRP-----PGGVLAPGDSII 137 (141)
Q Consensus 95 v~s~L~LtN~S~~-----~VAFKVKTTaPk~Y~VRP-----~~GiI~Pgesv~ 137 (141)
.+..+.|-|.+++ .++||.-.-..+.|..+- ..|.|.||+++.
T Consensus 29 ktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~~vk 81 (106)
T 3nrf_A 29 QAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVE 81 (106)
T ss_dssp EEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTCEEE
T ss_pred EEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCCcee
Confidence 4567888899887 568888887788887765 359999999876
No 47
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=65 Score=20.95 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCcEEecCCCceEee-CCCCCeeEEEEEEECCC----------CCeEEEEEeeCCCceeEec
Q 032412 73 PRRRLRLDPSNNLYFP-YEPGKQTRSAVRLKNTS----------KSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~-~e~~k~v~s~L~LtN~S----------~~~VAFKVKTTaPk~Y~VR 124 (141)
.+++..|... .|.+- .+.+......|.|.+.. ..+-+|.|.++..+.|.+.
T Consensus 40 k~R~fvL~~~-~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~ 101 (122)
T 2yry_A 40 NKRWFVLVDR-CLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFS 101 (122)
T ss_dssp EEEEEEEETT-EEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEEE
T ss_pred EEEEEEEeCC-EEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEEE
Confidence 4677888875 55543 44444455566665432 2355888877666666654
No 48
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=24.19 E-value=1.8e+02 Score=22.65 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=36.7
Q ss_pred CCeeEEEEEEECCCCCeEE-EEEeeCCCc------eeEecCCcceeCCCCEEEEEc
Q 032412 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPK------SCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 92 ~k~v~s~L~LtN~S~~~VA-FKVKTTaPk------~Y~VRP~~GiI~Pgesv~ItV 140 (141)
+...+-.|.+.|++..++. |++..-.+. ....+|.-..|+||+.+...|
T Consensus 41 ~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i 96 (247)
T 1kyf_A 41 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVV 96 (247)
T ss_dssp TTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEE
T ss_pred CCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEE
Confidence 3466778999999988665 888665544 344468888999999888765
No 49
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.20 E-value=82 Score=21.10 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.4
Q ss_pred EEEEEEECCCCCeEEEEEeeCCC
Q 032412 96 RSAVRLKNTSKSHVAFKFQTTAP 118 (141)
Q Consensus 96 ~s~L~LtN~S~~~VAFKVKTTaP 118 (141)
.-.|+++......|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 35788888888899999987765
No 50
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=23.11 E-value=1.5e+02 Score=20.59 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=29.4
Q ss_pred eEEEEEEECCCCCe-----EEEEEe-------------eCCCceeEecCC--cceeCC-CCEEEEE
Q 032412 95 TRSAVRLKNTSKSH-----VAFKFQ-------------TTAPKSCYMRPP--GGVLAP-GDSIIAT 139 (141)
Q Consensus 95 v~s~L~LtN~S~~~-----VAFKVK-------------TTaPk~Y~VRP~--~GiI~P-gesv~It 139 (141)
....++|+|..+.. |.|.+- +..-..|.|+|. .|-|+| |+++.+-
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fG 82 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFG 82 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEE
Confidence 45678888887654 344321 123467889864 488999 9988753
No 51
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=23.06 E-value=1.3e+02 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=29.2
Q ss_pred CCCCCcEEecCCCceEeeC-C---CCCeeEEEEEEECCCCCeEEEEEee
Q 032412 71 LPPRRRLRLDPSNNLYFPY-E---PGKQTRSAVRLKNTSKSHVAFKFQT 115 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~-e---~~k~v~s~L~LtN~S~~~VAFKVKT 115 (141)
.|+.-.|.+.|..--.... . +...++..|+|.|....++..|+|-
T Consensus 78 VPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~~~l~LR~kl 126 (153)
T 1p4u_A 78 APKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLKEKVRLRYKL 126 (153)
T ss_dssp CBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTCCCCCEEEEE
T ss_pred cCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 4567789999953322321 1 1235899999999987766666553
No 52
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=23.05 E-value=98 Score=23.97 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=32.2
Q ss_pred ceEeeCCCCCeeEEEEEEECCCCCeEEEE-EeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 84 eL~F~~e~~k~v~s~L~LtN~S~~~VAFK-VKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
.|.|....+ .|+++|++.-+|.|- ++. +.+. +. .+.|.|+++..+.+
T Consensus 140 ~L~~~~~g~-----~l~v~NptPyyvtl~~l~~-~g~~--i~--~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 140 NLSWKVDGG-----KLIAENPSPFYMNIGELTF-GGKS--IP--SHYIPPKSTWAFDL 187 (218)
T ss_dssp GCEEEEETT-----EEEEEECSSSCEEEEEEEE-TTEE--CC--CCEECTTEEEEEEC
T ss_pred ceEEEEeCC-----EEEEECCCCCEEEEEEEEE-CCEE--cc--CcEECCCCeeEEEC
Confidence 577766543 489999999999985 332 3332 32 47899998877654
No 53
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.40 E-value=66 Score=20.76 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEECCC---------CCeEEEEEeeCCCceeEec
Q 032412 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTS---------KSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S---------~~~VAFKVKTTaPk~Y~VR 124 (141)
.+++..|....-.+|..+.+......|.|.+.. +.+-+|+|.|...+.|.+.
T Consensus 22 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~ 82 (113)
T 1pls_A 22 KPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ 82 (113)
T ss_dssp EEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEE
T ss_pred eEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEE
Confidence 456777777533334433334445556554433 3456899988766667654
No 54
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=22.19 E-value=1.6e+02 Score=21.83 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=26.4
Q ss_pred EEEEECCCCCeEE---EEEeeC-CC--ceeEecCCcceeCCCCEEEE
Q 032412 98 AVRLKNTSKSHVA---FKFQTT-AP--KSCYMRPPGGVLAPGDSIIA 138 (141)
Q Consensus 98 ~L~LtN~S~~~VA---FKVKTT-aP--k~Y~VRP~~GiI~Pgesv~I 138 (141)
.|+|.|.+++.+. |+|+=. +. ..-+.=|..=+|+||+++.|
T Consensus 51 fV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVtI 97 (151)
T 1ufg_A 51 FVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTI 97 (151)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 5778888776553 566532 21 23333567778999999876
No 55
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.03 E-value=90 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.0
Q ss_pred eEEEEEEECCCCCeEEEEEeeCCC
Q 032412 95 TRSAVRLKNTSKSHVAFKFQTTAP 118 (141)
Q Consensus 95 v~s~L~LtN~S~~~VAFKVKTTaP 118 (141)
..-.|+++......|.|||+.+.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 345788888888899999987765
No 56
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=21.87 E-value=1e+02 Score=22.39 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=30.3
Q ss_pred CceEeeCC--CCCeeEEEEEEECCCCCeEEEEEeeCCCc
Q 032412 83 NNLYFPYE--PGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119 (141)
Q Consensus 83 ~eL~F~~e--~~k~v~s~L~LtN~S~~~VAFKVKTTaPk 119 (141)
..+.|..| +|+.+++.++++...+.++.+.+++++.+
T Consensus 108 ~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~d 146 (159)
T 3k67_A 108 QSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKCYTGD 146 (159)
T ss_dssp EEEEECSCCCTTCEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred eeeEEcCCcCCCCEEEEEEEEEEEECCEEEEEEEEEECC
Confidence 47888876 68899999999988888888888876654
No 57
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=21.74 E-value=86 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.2
Q ss_pred EEEEEEECCCCCeEEEEEeeCCC
Q 032412 96 RSAVRLKNTSKSHVAFKFQTTAP 118 (141)
Q Consensus 96 ~s~L~LtN~S~~~VAFKVKTTaP 118 (141)
.-.|++.......|.||||.+.|
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEEcCCCCEEEEEEccCCh
Confidence 45788888888899999997776
No 58
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=21.67 E-value=61 Score=21.28 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCCcEEecCCCceEe-eCCCCCeeEEEEEEECC----------CCCeEEEEEeeCCCceeEec
Q 032412 73 PRRRLRLDPSNNLYF-PYEPGKQTRSAVRLKNT----------SKSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F-~~e~~k~v~s~L~LtN~----------S~~~VAFKVKTTaPk~Y~VR 124 (141)
.+++..|... .|.+ ..+.+......|.|.+. ...+-+|.|.+...+.|.+.
T Consensus 39 k~R~fvL~~~-~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~ 100 (128)
T 2dkp_A 39 KKRWFVLSDL-CLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFC 100 (128)
T ss_dssp EEEEEEEETT-EEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEE
T ss_pred eeEEEEEeCC-EEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEE
Confidence 5677888875 5544 43434444444444221 23456888888665666643
No 59
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=21.64 E-value=1.2e+02 Score=26.60 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEec
Q 032412 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VR 124 (141)
.|.+-.+.++|. .|.|... ++..+..++++........|=.-+=..+++.||
T Consensus 561 ~p~gv~v~V~P~-~l~f~~~-~~~~~~~vt~~~~~~~~~~~g~l~w~d~~h~Vr 612 (621)
T 3vta_A 561 APQGLTISVNPN-VLSFNGL-GDRKSFTLTVRGSIKGFVVSASLVWSDGVHYVR 612 (621)
T ss_dssp CCSSEEEEEESS-EEEECST-TCEEEEEEEEEECCCSSEEEEEEEEECSSCCCE
T ss_pred CCCCcEEEEecC-EEEEcCC-CcEEEEEEEEEecCCCceEEEEEEEEcCCEEEE
Confidence 356777899996 9999854 445567777776655554443222223556666
No 60
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=20.87 E-value=65 Score=25.40 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=32.3
Q ss_pred CceEeeCCCCCeeEEEEEEECCCCCeEEEE-EeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412 83 NNLYFPYEPGKQTRSAVRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATG 140 (141)
Q Consensus 83 ~eL~F~~e~~k~v~s~L~LtN~S~~~VAFK-VKTTaPk~Y~VRP~~GiI~Pgesv~ItV 140 (141)
..|.|....+ .|+++|++.-+|.|- |+- +.+. +. ..+.|.|+++..+.+
T Consensus 161 ~~L~~~~~g~-----~l~v~NptPyyvtl~~l~~-~g~~--~~-~~~mV~P~s~~~~~l 210 (239)
T 4djm_A 161 GKVEWQRAGN-----RLKGVNPTPFYINLSTLTV-GGKE--VK-EREYIAPFSSREYPL 210 (239)
T ss_dssp GGCEEEEETT-----EEEEECCSSSCBCEEEEEE-TTEE--CS-SCCCBCTTCEEEEEC
T ss_pred heeEEEEeCC-----EEEEECCCceEEEEEEEEE-CCEe--cc-CceeEcCCcceEEEc
Confidence 3566765432 489999999988874 332 2222 22 567899999887654
No 61
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=20.71 E-value=57 Score=20.48 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEECCC-----------CCeEEEEEeeCCCceeEec
Q 032412 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTS-----------KSHVAFKFQTTAPKSCYMR 124 (141)
Q Consensus 73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S-----------~~~VAFKVKTTaPk~Y~VR 124 (141)
.+++..|....-.+|..+.+......|.|.+.+ ..+-+|.|.+...+.|...
T Consensus 24 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~ 86 (108)
T 1u5d_A 24 QKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFT 86 (108)
T ss_dssp EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEE
T ss_pred eeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEE
Confidence 456677776533344433333334455443333 2356888887654555543
No 62
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.33 E-value=2.5e+02 Score=20.49 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=33.5
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecC
Q 032412 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125 (141)
Q Consensus 74 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP 125 (141)
...-+|+.+ .|.-. -|+.++-.-++.-...+-=.|.++|+..+.-.|+-
T Consensus 28 ~~~pRVN~s-~L~~f--vGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l 76 (142)
T 2pi2_E 28 LPRSRINAG-MLAQF--IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIEL 76 (142)
T ss_dssp SCCEEECGG-GGGGS--TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEEC
T ss_pred CCcceECHH-HHHhh--CCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEe
Confidence 335677776 44221 37788888888877555556788888888877763
No 63
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=20.27 E-value=1.4e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=36.0
Q ss_pred EEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEE
Q 032412 96 RSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIAT 139 (141)
Q Consensus 96 ~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~It 139 (141)
...+-|.|.|+-.+.|-.-+...+.+.+| ..|+|+|+..+.|+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ie 71 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLE 71 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEE
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEE
Confidence 35677899999999999988788888777 67999999888764
Done!