BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032413
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 66 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 123
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 124 SMIHDYMNLIKPGET 138
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 69 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 126
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 127 SMIHDYMNLIKPGET 141
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML 89
E +I +YG FP+ +D DRQ+L + +P++ L
Sbjct: 69 ESKIAVHNFXKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFL 109
>pdb|2P22|D Chain D, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 79
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 48 EEIKRRI-LVNTYGTAFPMKMDFDRQILSRFQRPTGAIPS 86
EE+ RRI L N YG FP ++ ++RFQ P +P+
Sbjct: 4 EELLRRIPLYNKYGKDFP------QETVTRFQMPEFKLPA 37
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 21 FDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVN-----TYGTAFPMKMDFD 70
FD+ G + D+ G PL+ Q A++ + +KR I ++ AF + D+D
Sbjct: 161 FDVDGFRCDVAGLVPLDFWLQ-ARKNLDPVKRLIWISETHDPYMYQAFDITYDYD 214
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|B Chain B, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|C Chain C, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|D Chain D, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
Length = 648
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 36 LETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEA 93
+ ++C + Q EE + N Y +P+K++ R+++ + + LGLEA
Sbjct: 78 VHSICDAFNQAIEEYQYP---NKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEA 132
>pdb|3CAX|A Chain A, Crystal Structure Of Uncharacterized Protein Pf0695
Length = 369
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 29 DIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSM 88
D+ HPL+TL Q K E +K ++N Y D R + +
Sbjct: 4 DLPEGHPLKTLYQENK---EIMKDAEMLNLYAKTLATTKD------ERMR-------EEI 47
Query: 89 LG-LEAVTGSLEDFGFEHY 106
LG LE + SL GF HY
Sbjct: 48 LGVLEEIVSSLRMVGFTHY 66
>pdb|1M4U|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7)
In Complex With The Secreted Antagonist Noggin
Length = 206
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 78 QRPTGAIPSSMLGLEAVTG 96
QRP+GA+PS + GLE G
Sbjct: 84 QRPSGAMPSEIKGLEFSEG 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,289,559
Number of Sequences: 62578
Number of extensions: 158946
Number of successful extensions: 261
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 14
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)