BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032413
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0DWQ7|CCB12_ORYSJ Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1
Length = 391
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 1 MAAQNKISHQVGEFQNDVFRFDIH-GVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTY 59
MA+ + ++G +DV RF ++ VK D+ HPL+ + + KR Y
Sbjct: 1 MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIY 59
Query: 60 GTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESE 114
G+AF ++ D D QILS+FQRP GA+PSSMLG EA+TGSL+DFGFE YLN SE
Sbjct: 60 GSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114
>sp|Q55G18|POMP_DICDI Proteasome maturation protein homolog OS=Dictyostelium discoideum
GN=pomp PE=3 SV=1
Length = 128
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 28 SDIVG-SHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIP 85
S++ G SHP+E++ + E ++K + N +GT M + ++QI S+F+R PT +
Sbjct: 19 SNVKGLSHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQ 76
Query: 86 SSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGLS 132
SSM+GLE + G EDF F YL DP SE+ P LH ME R+G++
Sbjct: 77 SSMVGLETILGLDEDFDFGDYLCDPATSEAPLPQ-LHTSMEHRLGMT 122
>sp|Q3SZV5|POMP_BOVIN Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1
Length = 141
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
G F++ D+ R VK++++ SHPLE ++ + ++++ L N G P+K+ +
Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82
Query: 71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
+ + + QR +PSS L L+ + G+ E GFE LNDP +SE + H +E ++G
Sbjct: 83 FKAVQQVQR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHLMVEYKLG 139
Query: 131 L 131
L
Sbjct: 140 L 140
>sp|Q5R9L9|POMP_PONAB Proteasome maturation protein OS=Pongo abelii GN=POMP PE=2 SV=1
Length = 141
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 17 DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSR 76
D+ R VK++++ SHPLE ++ + ++++ L N G P+K+ + + + +
Sbjct: 29 DLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQ 88
Query: 77 FQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 131
QR + SS L L+ + G+ E GFE LNDP +SE + H +E ++GL
Sbjct: 89 VQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140
>sp|Q9Y244|POMP_HUMAN Proteasome maturation protein OS=Homo sapiens GN=POMP PE=1 SV=1
Length = 141
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 17 DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSR 76
D+ R VK++++ SHPLE ++ + ++++ L N G P+K+ + + + +
Sbjct: 29 DLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQ 88
Query: 77 FQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIGL 131
QR + SS L L+ + G+ E GFE LNDP +SE + H +E ++GL
Sbjct: 89 VQR-LPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVM--GEPHLMVEYKLGL 140
>sp|Q9CQT5|POMP_MOUSE Proteasome maturation protein OS=Mus musculus GN=Pomp PE=2 SV=1
Length = 141
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 12 GEFQN-DVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFD 70
G F++ D+ R VK++++ SHPLE ++ + ++++ L N G P+K+ +
Sbjct: 23 GPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQME 82
Query: 71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRIG 130
+ + + R +PSS L L+ + G+ E GFE LNDP +SE + H +E ++G
Sbjct: 83 FKAVQQVHR-LPFLPSSNLSLDILRGNDETIGFEDILNDPSQSELM--GEPHVMVEHKLG 139
Query: 131 L 131
L
Sbjct: 140 L 140
>sp|P36306|VP4_ROTB6 Outer capsid protein VP4 OS=Rotavirus A (isolate
Cow/Thailand/61A/1988
G10-P7[5]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx) PE=3 SV=1
Length = 776
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 35 PLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAV 94
P+ +S KQREE+ I+V+ T+ +M ++R I+ RF+ I S LG +
Sbjct: 235 PVAISSRSIKQREEQANEDIIVSK--TSLWKEMQYNRDIIIRFKFDNSIIKSGGLGYKWA 292
Query: 95 TGSLEDFGFEH-YLNDPRE 112
S + +++ Y+ D E
Sbjct: 293 EISFKAANYQYNYIRDGEE 311
>sp|P35160|RESA_BACSU Thiol-disulfide oxidoreductase ResA OS=Bacillus subtilis (strain
168) GN=resA PE=1 SV=2
Length = 179
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 47 EEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSML------GLEAVTGSLED 100
E +I + +YG FP+ +D DRQ+L + +P++ L ++ VTG++ +
Sbjct: 105 ESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD--VSPLPTTFLINPEGKVVKVVTGTMTE 162
Query: 101 FGFEHYLNDPRESES 115
Y+N + E+
Sbjct: 163 SMIHDYMNLIKPGET 177
>sp|P86832|CBCL2_ARTSP 4-chlorobenzoate--CoA ligase OS=Arthrobacter sp. GN=fcbA2 PE=1 SV=1
Length = 522
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 39 LCQSAKQREEEIKRRILVNTYGTAFPMKMDFD----------------RQILSRFQRPTG 82
+ QS +R E+ + +V+ YGT M F+ Q S + P+
Sbjct: 282 INQSILKRLEKCLQVPIVDIYGTTETMNSLFNPDATQERGLRPGYHSRVQFASVSESPSV 341
Query: 83 AIPSSMLGLEAVTGSLEDFGFEHYLNDPRESES 115
A+P+ + G E V + D F HYLN+P + +
Sbjct: 342 ALPAGVEG-ELVVDASADATFTHYLNNPEATAA 373
>sp|P86831|CBCL1_ARTSP 4-chlorobenzoate--CoA ligase OS=Arthrobacter sp. GN=fcbA1 PE=1 SV=1
Length = 522
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 39 LCQSAKQREEEIKRRILVNTYGTAFPMKMDFD----------------RQILSRFQRPTG 82
+ QS +R E+ + +V+ YGT M F+ Q S + P+
Sbjct: 282 INQSILKRLEKCLQVPIVDIYGTTETMNSLFNPDATQERGLRPGYHSRVQFASVSESPSV 341
Query: 83 AIPSSMLGLEAVTGSLEDFGFEHYLNDPRESES 115
A+P+ + G E V + D F HYLN+P + +
Sbjct: 342 ALPAGVEG-ELVVDASADATFTHYLNNPEATAA 373
>sp|O74416|UMP1_SCHPO Probable proteasome maturation factor ump1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ump1 PE=3 SV=1
Length = 129
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 12 GEFQNDVFRFDIHGVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDR 71
G F+ V I V + HPLE+ ++ + ++++I+ + YG P++ + ++
Sbjct: 15 GNFKVSVLEPSIPAVHR-VENKHPLESRLKNWEAQQQQIRLDSMRRIYGLHEPVRREMEQ 73
Query: 72 QILSRFQRPTG 82
++ S+ RP
Sbjct: 74 KLASQSSRPLA 84
>sp|Q7UP26|THIC_RHOBA Phosphomethylpyrimidine synthase OS=Rhodopirellula baltica (strain
SH1) GN=thiC PE=3 SV=1
Length = 441
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 71 RQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLN 108
RQI+ + P G +P + LE + G++ED +H+L+
Sbjct: 110 RQIIDKSPVPIGTVPIYQM-LEELGGNIEDMNAQHFLD 146
>sp|Q8BLS7|SWAHA_MOUSE Ankyrin repeat domain-containing protein SOWAHA OS=Mus musculus
GN=Sowaha PE=2 SV=2
Length = 548
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 70 DRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLNDPRESESFRPADLHHGMEVRI 129
D S Q +PS + +EA +GS G PR SE RPA + G+ +
Sbjct: 134 DSSAPSELQHTPETLPSEVTQVEAPSGSAPQPGGPEDPALPRSSELARPASVPSGLALTS 193
Query: 130 GLSKGP 135
S GP
Sbjct: 194 TESPGP 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,456,779
Number of Sequences: 539616
Number of extensions: 2086183
Number of successful extensions: 5033
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5021
Number of HSP's gapped (non-prelim): 13
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)