Query 032413
Match_columns 141
No_of_seqs 111 out of 207
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3syn_E ATP-binding protein YLX 29.6 9.7 0.00033 19.4 -0.2 17 56-72 3-19 (23)
2 2gpv_G Nuclear receptor corepr 18.7 30 0.001 18.2 0.3 11 93-105 12-22 (26)
3 2i6h_A AGR_C_189P, hypothetica 14.4 35 0.0012 26.5 -0.1 33 69-109 168-200 (207)
4 3hn2_A 2-dehydropantoate 2-red 12.0 1.6E+02 0.0055 22.7 3.2 47 53-103 225-273 (312)
5 1bgf_A STAT-4; transcription f 11.7 74 0.0025 22.5 1.0 16 51-66 15-30 (124)
6 3i83_A 2-dehydropantoate 2-red 10.0 1.2E+02 0.0041 23.5 1.8 46 54-103 227-272 (320)
7 3hwr_A 2-dehydropantoate 2-red 8.2 2.7E+02 0.0093 21.5 3.2 46 54-103 237-282 (318)
8 1jei_A Emerin; membrane protei 7.7 1.2E+02 0.0042 18.5 0.7 12 128-139 17-28 (53)
9 4emc_C Monopolin complex subun 6.9 86 0.0029 20.0 -0.3 16 93-108 10-25 (70)
10 1dd4_C 50S ribosomal protein L 6.2 2.5E+02 0.0085 15.9 1.5 14 120-133 20-33 (40)
No 1
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=29.56 E-value=9.7 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=13.4
Q ss_pred HHhhcCcchhHHHHHHH
Q 032413 56 VNTYGTAFPMKMDFDRQ 72 (141)
Q Consensus 56 r~~yG~~~PlR~~MEr~ 72 (141)
-|.|-.++.+|-.||+.
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35677789999999874
No 2
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=18.69 E-value=30 Score=18.24 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=7.1
Q ss_pred hhcCCCCcccccc
Q 032413 93 AVTGSLEDFGFEH 105 (141)
Q Consensus 93 iL~Grd~~i~feD 105 (141)
.|||+-|+ |||
T Consensus 12 almg~yd~--~e~ 22 (26)
T 2gpv_G 12 ALMGKYDQ--WEE 22 (26)
T ss_pred HHccchhh--Hhh
Confidence 46787776 554
No 3
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=14.38 E-value=35 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHHhhCCCCCCCCCCChhhHHhhcCCCCccccccccCC
Q 032413 69 FDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLND 109 (141)
Q Consensus 69 MEr~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~feD~ln~ 109 (141)
--+.|+.+++|.| |...++||..|=+..+||..
T Consensus 168 ~Hr~II~rFGRfP--------HRN~iLGR~ST~eE~~fL~~ 200 (207)
T 2i6h_A 168 EHRDIVERFGRFP--------HRNGILLRETTPEERQYLEE 200 (207)
T ss_dssp HHHHHHHHHSSCG--------GGHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHhCCCc--------cccchhCCCCCHHHHHHHHc
Confidence 3478999999999 67788999999999999974
No 4
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=11.99 E-value=1.6e+02 Score=22.67 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=27.7
Q ss_pred HHHHHhhc--CcchhHHHHHHHHHhhCCCCCCCCCCChhhHHhhcCCCCcccc
Q 032413 53 RILVNTYG--TAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGF 103 (141)
Q Consensus 53 ~~lr~~yG--~~~PlR~~MEr~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~f 103 (141)
..+.+..| ...| ..+-..++.-....+. ..|||+ .|+..||-.+||+
T Consensus 225 ~~va~a~G~~~~~~--~~~~~~~~~~~~~~~~-~~sSM~-qD~~~gr~tEid~ 273 (312)
T 3hn2_A 225 IAGANAQGLATFIA--DGYVDDMLEFTDAMGE-YKPSME-IDREEGRPLEIAA 273 (312)
T ss_dssp HHHHHTSCCSSCCC--TTHHHHHHHHHTTSCS-CCCHHH-HHHHTTCCCCHHH
T ss_pred HHHHHHcCCccCCC--HHHHHHHHHHHhcCCC-CCchHH-HHHHhCCCccHHH
Confidence 34445567 5554 2233344444455553 556665 8999999888764
No 5
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=11.67 E-value=74 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCcchhH
Q 032413 51 KRRILVNTYGTAFPMK 66 (141)
Q Consensus 51 k~~~lr~~yG~~~PlR 66 (141)
-++.+.++||.++|+-
T Consensus 15 ~l~qv~~LY~~~FPiE 30 (124)
T 1bgf_A 15 FLEQVDQFYDDNFPME 30 (124)
T ss_dssp GHHHHGGGCBTTBCHH
T ss_pred HHHHHHHHhcccCCHH
Confidence 3568899999999974
No 6
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=9.99 E-value=1.2e+02 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHhhcCcchhHHHHHHHHHhhCCCCCCCCCCChhhHHhhcCCCCcccc
Q 032413 54 ILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGF 103 (141)
Q Consensus 54 ~lr~~yG~~~PlR~~MEr~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~f 103 (141)
.+.+..|...|- .+-..++.-....+. ..|||+ .|+..||-.+||+
T Consensus 227 ~va~a~G~~l~~--~~~~~~~~~~~~~~~-~~sSM~-qD~~~gr~tEid~ 272 (320)
T 3i83_A 227 AVAAANGHPLPE--DIVEKNVASTYKMPP-YKTSML-VDFEAGQPMETEV 272 (320)
T ss_dssp HHHHHTTCCCCT--THHHHHHHHHHHSCC-CCCHHH-HHHHHTCCCCHHH
T ss_pred HHHHHcCCCCCh--HHHHHHHHHHhcCCC-CCCcHH-HHHHhCCCchHHH
Confidence 334445665552 222233333333443 455555 8999999888765
No 7
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=8.20 E-value=2.7e+02 Score=21.50 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHhhcCcchhHHHHHHHHHhhCCCCCCCCCCChhhHHhhcCCCCcccc
Q 032413 54 ILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGF 103 (141)
Q Consensus 54 ~lr~~yG~~~PlR~~MEr~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~f 103 (141)
.+.+..|...+-. ....++.-....|. ..||| ..|+..||-.+||+
T Consensus 237 ~va~a~G~~l~~~--~~~~~~~~~~~~~~-~~sSM-~qD~~~gr~tEid~ 282 (318)
T 3hwr_A 237 AVARAEGVKLPDD--VALAIRRIAETMPR-QSSST-AQDLARGKRSEIDH 282 (318)
T ss_dssp HHHHHTTCCCCTT--HHHHHHHHHHHSTT-CCCHH-HHHHHTTCCCSGGG
T ss_pred HHHHHcCCCCChH--HHHHHHHHHHhcCC-CCcHH-HHHHHcCChhHHHH
Confidence 3445567665543 33333333333453 55555 67999999988875
No 8
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=7.68 E-value=1.2e+02 Score=18.51 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=9.3
Q ss_pred HhCCCCCCCCCC
Q 032413 128 RIGLSKGPAYPS 139 (141)
Q Consensus 128 rlgi~~~~~~~~ 139 (141)
++|+..||+.++
T Consensus 17 ~~G~~~GPIt~s 28 (53)
T 1jei_A 17 RYNIPHGPVVGS 28 (53)
T ss_dssp SSCCSCCCCCSG
T ss_pred HhCCCCCCCCcc
Confidence 569999997764
No 9
>4emc_C Monopolin complex subunit MAM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae}
Probab=6.92 E-value=86 Score=19.97 Aligned_cols=16 Identities=6% Similarity=0.302 Sum_probs=12.9
Q ss_pred hhcCCCCccccccccC
Q 032413 93 AVTGSLEDFGFEHYLN 108 (141)
Q Consensus 93 iL~Grd~~i~feD~ln 108 (141)
||--|.++|.|.||--
T Consensus 10 ilikre~~iafddf~l 25 (70)
T 4emc_C 10 VLIKREDEIAFDDFHL 25 (70)
T ss_dssp CSSGGGGSSCSTTCCC
T ss_pred heeecccccccccccc
Confidence 5667899999999853
No 10
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=6.22 E-value=2.5e+02 Score=15.95 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=11.0
Q ss_pred CcHHHHHHHhCCCC
Q 032413 120 DLHHGMEVRIGLSK 133 (141)
Q Consensus 120 d~H~~mE~rlgi~~ 133 (141)
++=..+|.+||++.
T Consensus 20 eLvk~leekfGVsa 33 (40)
T 1dd4_C 20 ELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHCCCc
Confidence 34578999999975
Done!